BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027622
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 128/198 (64%), Gaps = 3/198 (1%)
Query: 25 DPSPLQDICVAIDEPKNAVFVNGKFCKDPKLAKAQDF-FLSGLDKPGNTANRLGFSVTNA 83
DP PLQD CVA D AV VNG CK P DF F S L K GNT+ G +VT
Sbjct: 2 DPDPLQDFCVA-DLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 84 NVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLI 143
+V + PG NTLG+S R+D+AP G NPPH HPRATEI +V++G L VG + S N L
Sbjct: 60 DVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 144 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVITIANTVFGANPPINPDFL 203
++V+ G+ FV P G++HFQFN+GKT A + + +SQ PG++ + T+FG++PPI L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 204 AKAFQLDVNVVKELEAKF 221
KA +++ VV+ L++KF
Sbjct: 180 TKALRVEAGVVELLKSKF 197
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 128/198 (64%), Gaps = 3/198 (1%)
Query: 25 DPSPLQDICVAIDEPKNAVFVNGKFCKDPKLAKAQDF-FLSGLDKPGNTANRLGFSVTNA 83
DP PLQD CVA D AV VNG CK P DF F S L K GNT+ G +VT
Sbjct: 2 DPDPLQDFCVA-DLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 84 NVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLI 143
+V + PG NTLG+S R+D+AP G NPPH HPRATEI +V++G L VG + S N L
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 144 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVITIANTVFGANPPINPDFL 203
++V+ G+ FV P G++HFQFN+GKT A + + +SQ PG++ + T+FG++PPI L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 204 AKAFQLDVNVVKELEAKF 221
KA +++ VV+ L++KF
Sbjct: 180 TKALRVEAGVVELLKSKF 197
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 128/198 (64%), Gaps = 3/198 (1%)
Query: 25 DPSPLQDICVAIDEPKNAVFVNGKFCKDPKLAKAQDF-FLSGLDKPGNTANRLGFSVTNA 83
DP PLQD CVA D AV VNG CK P DF F S L K GNT+ G +VT
Sbjct: 2 DPDPLQDFCVA-DLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 84 NVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLI 143
+V + PG NTLG+S R+D+AP G NPPH HPRATEI +V++G L VG + S N L
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 144 AKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVITIANTVFGANPPINPDFL 203
++V+ G+ FV P G++HFQFN+GKT A + + +SQ PG++ + T+FG++PPI L
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 204 AKAFQLDVNVVKELEAKF 221
KA +++ VV+ L++KF
Sbjct: 180 TKALRVEAGVVELLKSKF 197
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 107 GQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIH 161
G+ H H E+ +V EGTL + F N L G+ +V P G+ H
Sbjct: 40 GEFVWHEHADTDEVFIVXEGTLQIAFRDQN--------ITLQAGEXYVIPKGVEH 86
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 131 GFVTSNQLNNTLIA-KVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSS 179
G + QL ++ + N+GDV V P G+ ++ +N G VAI+ L +
Sbjct: 99 GSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDT 148
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 131 GFVTSNQLNNTLIA-KVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSS 179
G + QL ++ + N+GDV V P G+ ++ +N G VAI+ L +
Sbjct: 100 GSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDT 149
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 7/139 (5%)
Query: 80 VTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLN 139
++ N +P L G+SA + G PH + A ++ V G V V N
Sbjct: 351 ISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV--NXQG 408
Query: 140 NTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVITIANTVFGANPPIN 199
N + L +G + V P + + G + + V + VF A P
Sbjct: 409 NAVFDGELRRGQLLVVPQNFVVAE--QGGEQGLEYVVFKTHHNAVSSYIKDVFRAIP--- 463
Query: 200 PDFLAKAFQLDVNVVKELE 218
+ L+ ++ L + V++L+
Sbjct: 464 SEVLSNSYNLGQSQVRQLK 482
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 148 NKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVITIANTVFGANPPINPDFLA 204
+GD+ V P G+ H+ +N G+++ V I F +AN + +P + +LA
Sbjct: 132 REGDLLVVPAGVSHWMYNRGQSDLVLIV-----FADTRNVANQI---DPYLRKFYLA 180
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 145 KVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174
+ L +GD+F P G+ H+ +N G VA+
Sbjct: 132 RHLREGDIFAMPAGVSHWAYNNGDQPLVAV 161
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 111 PHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKV----LNKGDVFVFP 156
PH + +A ILVV EG +V V TL + L+K DVFV P
Sbjct: 254 PHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIP 303
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 112 HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGD---VFVFPIGMIHFQFNIGK 168
H H E +V+ G G + +N+ I + GD V P+G H N+G
Sbjct: 288 HWHHTKNEKFLVVSGK---GVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGD 344
Query: 169 TNAVAIAALSSQF 181
T+ V I ++ F
Sbjct: 345 TDMVTIMWVNEMF 357
>pdb|1MI2|A Chain A, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|1MI2|B Chain B, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|3N52|A Chain A, Crystal Structure Analysis Of Mip2
pdb|3N52|B Chain B, Crystal Structure Analysis Of Mip2
pdb|3N52|C Chain C, Crystal Structure Analysis Of Mip2
pdb|3N52|D Chain D, Crystal Structure Analysis Of Mip2
Length = 73
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 109 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG 150
PP H TE++ L+G V L +I K+LNKG
Sbjct: 29 TPPGPHCAQTEVIATLKGGQKVCLDPEAPLVQKIIQKILNKG 70
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 111 PHTHPRATEILVVLEGTLYVGFV----------TSNQLNNTLIAKVLNKGDVFVFP 156
PH + RAT ILV EG V V S QL A L++GD+ V P
Sbjct: 56 PHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRR--YAATLSEGDIIVIP 109
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 111 PHTHPRATEILVVLEGTLYVGFV----------TSNQLNNTLIAKVLNKGDVFVFP 156
PH + RAT ILV EG V V S QL A L++GD+ V P
Sbjct: 296 PHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRR--YAATLSEGDIIVIP 349
>pdb|3PFN|A Chain A, Crystal Structure Of Human Nad Kinase
pdb|3PFN|B Chain B, Crystal Structure Of Human Nad Kinase
pdb|3PFN|C Chain C, Crystal Structure Of Human Nad Kinase
pdb|3PFN|D Chain D, Crystal Structure Of Human Nad Kinase
Length = 365
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 28 PLQDICVAIDEPKNAVFVNGKFCKDPKLAKAQDF 61
P +++C + E V+V K +DP +A + F
Sbjct: 55 PFKELCTHLXEENXIVYVEKKVLEDPAIASDESF 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,082,951
Number of Sequences: 62578
Number of extensions: 230511
Number of successful extensions: 503
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 18
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)