Query 027622
Match_columns 221
No_of_seqs 298 out of 1672
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:42:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 100.0 1.2E-27 2.5E-32 217.8 19.5 160 49-219 202-361 (367)
2 PLN00212 glutelin; Provisional 99.9 1.4E-24 3.1E-29 202.8 18.4 144 71-220 323-468 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 1.4E-23 3E-28 191.1 18.3 151 55-220 32-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 5.1E-23 1.1E-27 164.2 12.0 131 72-215 9-144 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 4.9E-20 1.1E-24 147.3 17.6 136 74-215 8-146 (146)
6 PLN00212 glutelin; Provisional 99.8 4.7E-18 1E-22 159.2 20.2 140 75-219 60-248 (493)
7 COG2140 Thermophilic glucose-6 99.8 9.1E-19 2E-23 146.6 13.0 149 57-220 49-199 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 8.4E-14 1.8E-18 96.9 7.6 70 100-177 2-71 (71)
9 COG0662 {ManC} Mannose-6-phosp 99.4 2.3E-12 5E-17 101.0 11.9 82 94-183 34-115 (127)
10 COG1917 Uncharacterized conser 99.4 2.4E-12 5.2E-17 100.8 11.7 86 86-179 33-118 (131)
11 PRK13290 ectC L-ectoine syntha 99.4 3.6E-12 7.9E-17 99.9 11.6 81 94-184 33-114 (125)
12 PRK04190 glucose-6-phosphate i 99.3 4E-11 8.7E-16 100.4 13.6 88 90-180 62-157 (191)
13 PRK11171 hypothetical protein; 99.2 2.9E-10 6.3E-15 99.7 14.9 110 51-178 26-136 (266)
14 COG3837 Uncharacterized conser 99.2 7.1E-11 1.5E-15 94.8 9.9 84 86-179 34-120 (161)
15 TIGR01479 GMP_PMI mannose-1-ph 99.2 1.5E-10 3.3E-15 108.8 12.3 78 95-180 375-452 (468)
16 PRK09943 DNA-binding transcrip 99.2 2.1E-10 4.6E-15 95.0 11.7 76 94-178 105-181 (185)
17 PRK15460 cpsB mannose-1-phosph 99.2 2.6E-10 5.6E-15 107.5 12.0 78 94-179 383-460 (478)
18 COG4101 Predicted mannose-6-ph 99.1 6.2E-10 1.3E-14 85.7 9.7 84 95-183 45-128 (142)
19 PF01050 MannoseP_isomer: Mann 99.1 1.2E-09 2.7E-14 88.3 10.6 78 94-179 61-138 (151)
20 TIGR03214 ura-cupin putative a 99.0 5.7E-09 1.2E-13 91.3 12.4 76 95-178 57-133 (260)
21 TIGR03214 ura-cupin putative a 99.0 3.4E-09 7.4E-14 92.7 10.7 73 95-175 178-250 (260)
22 PRK11171 hypothetical protein; 99.0 5.5E-09 1.2E-13 91.6 10.5 73 95-176 183-256 (266)
23 PF02041 Auxin_BP: Auxin bindi 98.8 1.1E-07 2.5E-12 75.9 11.1 99 89-190 39-139 (167)
24 PRK13264 3-hydroxyanthranilate 98.7 6.4E-08 1.4E-12 79.8 9.4 70 100-176 38-107 (177)
25 TIGR03037 anthran_nbaC 3-hydro 98.7 1.3E-07 2.9E-12 76.7 9.8 60 104-168 36-95 (159)
26 PF06560 GPI: Glucose-6-phosph 98.6 6.7E-07 1.5E-11 74.3 11.7 86 91-179 45-146 (182)
27 PF11699 CENP-C_C: Mif2/CENP-C 98.6 4.9E-07 1.1E-11 66.3 9.2 73 95-176 11-84 (85)
28 PF02311 AraC_binding: AraC-li 98.5 5.3E-07 1.2E-11 68.5 8.3 64 105-177 12-75 (136)
29 PF12973 Cupin_7: ChrR Cupin-l 98.5 6.7E-07 1.4E-11 65.9 7.4 67 95-176 23-89 (91)
30 TIGR02451 anti_sig_ChrR anti-s 98.4 8.1E-07 1.8E-11 75.7 8.2 72 96-180 127-198 (215)
31 PRK15457 ethanolamine utilizat 98.4 3.7E-06 8E-11 72.0 11.2 70 95-177 156-225 (233)
32 PRK10371 DNA-binding transcrip 98.4 1.7E-06 3.7E-11 76.9 8.8 62 98-168 28-89 (302)
33 PF03079 ARD: ARD/ARD' family; 98.3 7.1E-06 1.5E-10 66.8 10.2 72 108-184 84-155 (157)
34 PRK10296 DNA-binding transcrip 98.2 1.5E-05 3.4E-10 69.2 10.0 52 106-166 33-84 (278)
35 COG1791 Uncharacterized conser 98.1 3E-05 6.5E-10 63.4 10.1 73 110-187 89-161 (181)
36 PRK13501 transcriptional activ 98.1 1.3E-05 2.9E-10 70.2 8.1 63 95-168 19-81 (290)
37 PRK13500 transcriptional activ 98.1 1.9E-05 4E-10 70.4 8.8 55 105-168 57-111 (312)
38 TIGR02297 HpaA 4-hydroxyphenyl 98.0 1.5E-05 3.2E-10 69.4 7.5 60 106-173 33-92 (287)
39 TIGR02272 gentisate_1_2 gentis 98.0 2.8E-05 6.1E-10 70.4 9.3 76 95-178 80-155 (335)
40 PF05523 FdtA: WxcM-like, C-te 98.0 4.2E-05 9.1E-10 60.3 8.5 96 77-180 15-112 (131)
41 PF06339 Ectoine_synth: Ectoin 97.9 0.00015 3.2E-09 56.6 10.5 83 92-183 31-113 (126)
42 COG3435 Gentisate 1,2-dioxygen 97.9 2.2E-05 4.7E-10 69.6 6.2 116 54-178 42-166 (351)
43 COG4297 Uncharacterized protei 97.9 3.9E-05 8.4E-10 60.8 6.9 64 109-178 56-119 (163)
44 PRK13502 transcriptional activ 97.9 5.9E-05 1.3E-09 65.6 8.5 56 104-168 26-81 (282)
45 PF06052 3-HAO: 3-hydroxyanthr 97.9 0.00019 4.1E-09 57.7 10.1 79 99-184 36-114 (151)
46 PRK13503 transcriptional activ 97.9 3.6E-05 7.8E-10 66.6 6.6 53 105-166 24-76 (278)
47 PF14499 DUF4437: Domain of un 97.8 4.2E-05 9E-10 66.7 6.8 73 94-174 34-106 (251)
48 PF05899 Cupin_3: Protein of u 97.8 5.3E-05 1.2E-09 53.9 5.7 58 96-163 7-64 (74)
49 KOG2107 Uncharacterized conser 97.7 5.7E-05 1.2E-09 61.5 5.5 56 108-167 85-140 (179)
50 COG3257 GlxB Uncharacterized p 97.7 0.00041 8.8E-09 59.1 9.8 75 96-178 61-136 (264)
51 TIGR02272 gentisate_1_2 gentis 97.5 0.0004 8.6E-09 63.0 8.6 86 77-175 232-318 (335)
52 PF06249 EutQ: Ethanolamine ut 97.4 0.00041 8.9E-09 56.1 5.6 68 96-176 77-144 (152)
53 COG1898 RfbC dTDP-4-dehydrorha 97.2 0.004 8.7E-08 51.4 9.8 71 105-175 54-130 (173)
54 COG4766 EutQ Ethanolamine util 97.1 0.0051 1.1E-07 49.7 9.4 68 95-175 99-166 (176)
55 COG3450 Predicted enzyme of th 96.9 0.0018 3.8E-08 50.2 5.0 60 96-165 45-104 (116)
56 PF05995 CDO_I: Cysteine dioxy 96.9 0.02 4.4E-07 47.2 11.7 86 95-180 74-165 (175)
57 TIGR01221 rmlC dTDP-4-dehydror 96.7 0.013 2.7E-07 48.7 8.9 80 104-184 52-139 (176)
58 PF00908 dTDP_sugar_isom: dTDP 96.6 0.0099 2.1E-07 49.2 7.9 81 104-184 51-139 (176)
59 COG3435 Gentisate 1,2-dioxygen 96.2 0.016 3.5E-07 51.7 7.0 64 102-175 267-330 (351)
60 PF13621 Cupin_8: Cupin-like d 96.0 0.035 7.6E-07 46.7 8.1 72 98-170 132-236 (251)
61 PF04209 HgmA: homogentisate 1 96.0 0.073 1.6E-06 49.8 10.6 61 110-178 139-199 (424)
62 PRK05341 homogentisate 1,2-dio 95.5 0.13 2.7E-06 48.3 10.0 57 109-174 146-202 (438)
63 PF13759 2OG-FeII_Oxy_5: Putat 95.5 0.054 1.2E-06 40.2 6.4 75 100-174 4-98 (101)
64 PF14499 DUF4437: Domain of un 95.5 0.01 2.3E-07 51.8 2.7 75 96-178 171-245 (251)
65 PF12852 Cupin_6: Cupin 95.4 0.11 2.3E-06 42.6 8.3 44 118-167 36-79 (186)
66 PRK10572 DNA-binding transcrip 95.3 0.068 1.5E-06 46.6 7.5 44 117-168 49-92 (290)
67 PF08007 Cupin_4: Cupin superf 95.3 0.21 4.6E-06 44.8 10.8 69 98-167 115-200 (319)
68 PLN02658 homogentisate 1,2-dio 95.3 0.18 3.9E-06 47.2 10.2 54 112-174 142-195 (435)
69 PF02678 Pirin: Pirin; InterP 95.2 0.082 1.8E-06 40.3 6.6 62 106-174 39-103 (107)
70 TIGR01015 hmgA homogentisate 1 95.2 0.19 4E-06 47.0 10.1 62 109-178 140-201 (429)
71 TIGR02466 conserved hypothetic 95.1 0.12 2.7E-06 43.6 8.0 71 97-172 97-192 (201)
72 COG1741 Pirin-related protein 94.9 0.1 2.3E-06 46.2 7.3 60 100-166 48-109 (276)
73 PF07385 DUF1498: Protein of u 94.8 0.26 5.7E-06 42.2 9.2 80 97-178 87-187 (225)
74 COG3806 ChrR Transcriptional a 94.8 0.095 2.1E-06 44.2 6.4 90 73-180 110-199 (216)
75 KOG3995 3-hydroxyanthranilate 94.7 0.061 1.3E-06 45.8 5.0 59 103-166 40-98 (279)
76 PRK00924 5-keto-4-deoxyuronate 94.2 0.34 7.4E-06 42.9 8.9 82 95-181 174-261 (276)
77 PF02373 JmjC: JmjC domain, hy 94.2 0.098 2.1E-06 38.9 4.8 31 140-170 78-108 (114)
78 PRK09685 DNA-binding transcrip 93.9 0.43 9.4E-06 41.7 9.1 67 95-169 44-115 (302)
79 PF07847 DUF1637: Protein of u 93.6 0.5 1.1E-05 40.0 8.5 89 91-180 39-144 (200)
80 PF05118 Asp_Arg_Hydrox: Aspar 93.4 0.44 9.6E-06 38.7 7.6 82 86-175 68-156 (163)
81 COG3822 ABC-type sugar transpo 93.3 0.51 1.1E-05 39.7 7.9 79 99-179 89-187 (225)
82 PRK12335 tellurite resistance 93.3 0.47 1E-05 41.7 8.3 62 104-167 19-82 (287)
83 COG3508 HmgA Homogentisate 1,2 93.2 1.2 2.6E-05 40.9 10.6 71 95-174 124-194 (427)
84 KOG3706 Uncharacterized conser 93.1 0.067 1.5E-06 50.6 2.6 63 104-167 325-405 (629)
85 COG3257 GlxB Uncharacterized p 92.8 0.85 1.8E-05 39.2 8.6 72 94-174 180-252 (264)
86 PF06865 DUF1255: Protein of u 92.0 2.2 4.8E-05 31.8 9.0 64 102-176 29-92 (94)
87 PRK15131 mannose-6-phosphate i 91.3 1.4 3E-05 41.0 9.0 58 96-164 321-378 (389)
88 PF14525 AraC_binding_2: AraC- 90.2 3.6 7.8E-05 32.1 9.5 67 96-170 34-100 (172)
89 PRK10579 hypothetical protein; 90.2 2.8 6E-05 31.3 8.0 55 103-166 30-84 (94)
90 KOG2757 Mannose-6-phosphate is 90.2 1.5 3.4E-05 40.3 8.0 75 95-178 332-406 (411)
91 TIGR00218 manA mannose-6-phosp 90.1 2.2 4.7E-05 38.0 8.9 60 94-164 233-292 (302)
92 PF09313 DUF1971: Domain of un 89.7 4.1 8.8E-05 29.6 8.5 61 107-168 14-75 (82)
93 PLN02288 mannose-6-phosphate i 89.5 1.2 2.5E-05 41.6 6.8 58 95-159 333-390 (394)
94 PF05726 Pirin_C: Pirin C-term 89.5 2.4 5.1E-05 31.7 7.4 67 99-176 2-68 (104)
95 PRK09391 fixK transcriptional 89.2 4.1 9E-05 34.3 9.6 64 95-161 35-98 (230)
96 PF11142 DUF2917: Protein of u 88.9 2.9 6.3E-05 28.7 6.9 57 101-165 2-58 (63)
97 PRK11753 DNA-binding transcrip 88.7 4.7 0.0001 33.0 9.4 54 99-155 21-74 (211)
98 COG5553 Predicted metal-depend 87.9 3.1 6.7E-05 34.2 7.4 69 96-169 73-147 (191)
99 PF00027 cNMP_binding: Cyclic 86.9 2.1 4.6E-05 29.4 5.5 49 102-153 3-51 (91)
100 PF04962 KduI: KduI/IolB famil 86.1 12 0.00027 32.8 10.9 97 78-181 135-247 (261)
101 COG2850 Uncharacterized conser 85.5 2.1 4.6E-05 39.4 5.9 64 102-166 125-202 (383)
102 PRK13918 CRP/FNR family transc 82.8 5.6 0.00012 32.3 7.0 54 100-155 8-62 (202)
103 COG1482 ManA Phosphomannose is 82.6 9.8 0.00021 34.4 8.9 58 95-163 241-298 (312)
104 PHA02984 hypothetical protein; 82.2 9.8 0.00021 33.6 8.4 52 118-174 92-145 (286)
105 smart00100 cNMP Cyclic nucleot 81.9 8 0.00017 27.2 6.8 54 100-156 19-72 (120)
106 cd00038 CAP_ED effector domain 80.5 7.8 0.00017 27.2 6.3 54 99-155 18-71 (115)
107 PHA02890 hypothetical protein; 79.1 18 0.00039 31.8 8.9 44 118-165 91-136 (278)
108 COG3123 Uncharacterized protei 78.2 8.5 0.00018 28.2 5.6 41 117-163 41-81 (94)
109 PRK10402 DNA-binding transcrip 77.1 8.9 0.00019 32.1 6.5 53 100-155 33-85 (226)
110 PF06172 Cupin_5: Cupin superf 75.3 39 0.00085 26.8 10.9 77 96-176 41-124 (139)
111 PRK00924 5-keto-4-deoxyuronate 74.1 25 0.00054 31.3 8.7 52 116-175 72-126 (276)
112 PF04962 KduI: KduI/IolB famil 73.7 21 0.00045 31.3 8.1 82 80-174 14-103 (261)
113 PLN02868 acyl-CoA thioesterase 72.4 14 0.00031 34.2 7.1 53 99-155 32-84 (413)
114 PRK15186 AraC family transcrip 71.4 15 0.00033 32.6 6.8 46 118-170 39-84 (291)
115 TIGR00218 manA mannose-6-phosp 70.7 2.3 4.9E-05 37.9 1.4 19 144-162 152-170 (302)
116 PRK03606 ureidoglycolate hydro 70.2 34 0.00073 28.0 8.0 65 110-174 72-138 (162)
117 PF04622 ERG2_Sigma1R: ERG2 an 69.5 11 0.00023 32.4 5.1 94 106-213 111-206 (216)
118 PF04115 Ureidogly_hydro: Urei 68.9 31 0.00066 28.1 7.6 67 111-177 74-144 (165)
119 COG1482 ManA Phosphomannose is 68.5 4.4 9.5E-05 36.6 2.7 22 142-163 157-178 (312)
120 PRK11161 fumarate/nitrate redu 67.2 50 0.0011 27.4 8.9 52 101-155 40-91 (235)
121 COG3717 KduI 5-keto 4-deoxyuro 66.6 33 0.00072 30.0 7.5 84 94-182 175-264 (278)
122 PRK15131 mannose-6-phosphate i 65.5 6.7 0.00014 36.4 3.4 22 142-163 236-257 (389)
123 COG0664 Crp cAMP-binding prote 64.5 28 0.0006 27.7 6.6 57 98-157 23-79 (214)
124 KOG2130 Phosphatidylserine-spe 63.3 12 0.00027 34.0 4.5 46 140-185 260-305 (407)
125 KOG1417 Homogentisate 1,2-diox 62.0 88 0.0019 28.4 9.5 63 109-179 147-209 (446)
126 PHA00672 hypothetical protein 60.1 60 0.0013 25.7 7.2 71 94-174 45-115 (152)
127 KOG2131 Uncharacterized conser 60.1 10 0.00022 35.1 3.5 71 97-169 197-294 (427)
128 TIGR03697 NtcA_cyano global ni 59.8 24 0.00052 28.2 5.4 36 117-154 11-46 (193)
129 PRK10202 ebgC cryptic beta-D-g 59.4 67 0.0014 25.6 7.8 54 110-164 58-127 (149)
130 PF13640 2OG-FeII_Oxy_3: 2OG-F 57.8 30 0.00065 24.7 5.2 65 101-166 4-86 (100)
131 KOG3416 Predicted nucleic acid 57.0 40 0.00087 26.6 5.8 66 88-165 11-80 (134)
132 COG2731 EbgC Beta-galactosidas 54.4 1.2E+02 0.0025 24.7 8.4 74 95-168 45-137 (154)
133 PRK09392 ftrB transcriptional 50.5 47 0.001 27.7 5.9 52 100-155 32-83 (236)
134 COG3718 IolB Uncharacterized e 48.9 1.7E+02 0.0037 25.7 8.9 86 80-169 16-103 (270)
135 TIGR00022 uncharacterized prot 47.6 1.3E+02 0.0027 23.7 7.6 38 96-133 46-85 (142)
136 PRK13395 ureidoglycolate hydro 47.3 1.3E+02 0.0029 24.7 7.8 68 110-177 72-142 (171)
137 KOG4281 Uncharacterized conser 46.6 9.4 0.0002 32.7 1.0 41 94-134 73-113 (236)
138 PF13994 PgaD: PgaD-like prote 43.8 29 0.00063 27.3 3.3 23 197-219 100-122 (138)
139 PF04074 DUF386: Domain of unk 43.7 1E+02 0.0022 24.4 6.5 70 95-164 45-134 (153)
140 PLN03192 Voltage-dependent pot 43.1 54 0.0012 33.2 5.9 52 98-153 397-448 (823)
141 PRK14585 pgaD putative PGA bio 43.0 29 0.00062 27.6 3.1 24 196-219 88-111 (137)
142 KOG1633 F-box protein JEMMA an 42.9 40 0.00088 34.2 4.9 74 102-179 142-232 (776)
143 PRK14584 hmsS hemin storage sy 40.9 34 0.00074 27.8 3.3 24 196-219 97-120 (153)
144 PF14801 GCD14_N: tRNA methylt 40.6 57 0.0012 21.8 3.8 36 129-167 11-46 (54)
145 PLN02288 mannose-6-phosphate i 40.2 22 0.00048 33.1 2.4 20 144-163 252-271 (394)
146 PF06719 AraC_N: AraC-type tra 39.9 1.9E+02 0.0041 22.9 9.6 70 95-176 5-77 (155)
147 PF13348 Y_phosphatase3C: Tyro 39.9 21 0.00046 24.1 1.8 24 198-221 44-67 (68)
148 PF05721 PhyH: Phytanoyl-CoA d 38.9 56 0.0012 25.7 4.4 29 141-169 178-207 (211)
149 PF13464 DUF4115: Domain of un 38.7 1.3E+02 0.0028 20.8 7.2 48 124-174 5-52 (77)
150 PF10365 DUF2436: Domain of un 38.5 44 0.00096 26.9 3.5 38 26-65 105-142 (161)
151 KOG0498 K+-channel ERG and rel 37.4 56 0.0012 33.0 4.9 48 102-153 446-493 (727)
152 COG1188 Ribosome-associated he 33.6 15 0.00033 27.7 0.2 29 30-63 28-56 (100)
153 PF13384 HTH_23: Homeodomain-l 33.0 51 0.0011 20.5 2.6 25 197-221 17-41 (50)
154 PRK02290 3-dehydroquinate synt 30.4 1.7E+02 0.0037 26.9 6.4 86 75-166 250-337 (344)
155 KOG1356 Putative transcription 30.4 19 0.0004 36.7 0.3 60 103-168 762-824 (889)
156 PRK05467 Fe(II)-dependent oxyg 29.5 1.6E+02 0.0035 25.3 5.9 25 144-168 142-166 (226)
157 COG1741 Pirin-related protein 27.8 4.3E+02 0.0094 23.4 12.1 43 87-131 165-207 (276)
158 PF10913 DUF2706: Protein of u 26.3 1.2E+02 0.0027 20.1 3.5 29 23-52 22-50 (60)
159 PF02787 CPSase_L_D3: Carbamoy 26.1 63 0.0014 25.0 2.6 24 197-220 72-95 (123)
160 TIGR02408 ectoine_ThpD ectoine 25.1 88 0.0019 27.3 3.6 37 143-179 211-249 (277)
161 KOG2132 Uncharacterized conser 25.0 77 0.0017 29.1 3.2 81 85-166 239-349 (355)
162 PF01959 DHQS: 3-dehydroquinat 24.6 2.4E+02 0.0052 26.1 6.3 86 75-166 260-347 (354)
163 PF01987 AIM24: Mitochondrial 24.2 1.3E+02 0.0027 25.0 4.3 41 120-164 132-172 (215)
164 PF05962 HutD: HutD; InterPro 21.8 1.2E+02 0.0026 25.0 3.6 34 116-157 134-167 (184)
165 KOG0501 K+-channel KCNQ [Inorg 20.5 1.3E+02 0.0029 30.0 4.0 46 100-153 573-618 (971)
166 PF01238 PMI_typeI: Phosphoman 20.1 77 0.0017 29.1 2.3 20 145-164 252-271 (373)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.96 E-value=1.2e-27 Score=217.81 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=143.7
Q ss_pred ccCCCCCCCCCCeeeecCCCCCCccCCCCeeEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEE
Q 027622 49 FCKDPKLAKAQDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTL 128 (221)
Q Consensus 49 ~ck~~~~v~~~dF~~~~~~~~~~~~~~~g~~v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~ 128 (221)
+-+.+..-.++.|+|++...++.. ..|++++.+++.++|+++ ++++++++++||++.++|||++++|++||++|++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~p~~--~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~ 277 (367)
T TIGR03404 202 AVTGPAGEVPGPFTYHLSEQKPKQ--VPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQA 277 (367)
T ss_pred cCcCCCCCCCccEEEEhhhCCcee--cCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEE
Confidence 334456666778999998888744 567889999999999988 4899999999999999999999999999999999
Q ss_pred EEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEeCCCCceeeechhhhcCCCCCCHHHHHHhcC
Q 027622 129 YVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVITIANTVFGANPPINPDFLAKAFQ 208 (221)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~ip~~vl~~af~ 208 (221)
++++.+++ ++..++.+++||+++||+|..|+++|.|+++++++++|++..++.+.+++|+.. +|++||+++|+
T Consensus 278 ~~~v~d~~---g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~----~p~~vl~~~~~ 350 (367)
T TIGR03404 278 RMTVFAAG---GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLAL----TPPQLVAAHLN 350 (367)
T ss_pred EEEEEecC---CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhh----CCHHHHHHHhC
Confidence 99998765 445578999999999999999999999999999999999999999999998754 99999999999
Q ss_pred CCHHHHHHHHh
Q 027622 209 LDVNVVKELEA 219 (221)
Q Consensus 209 ~~~~~v~~l~~ 219 (221)
++++++++|++
T Consensus 351 ~~~~~~~~l~~ 361 (367)
T TIGR03404 351 LDDEVIDSLKK 361 (367)
T ss_pred cCHHHHHhccc
Confidence 99999999986
No 2
>PLN00212 glutelin; Provisional
Probab=99.93 E-value=1.4e-24 Score=202.79 Aligned_cols=144 Identities=23% Similarity=0.316 Sum_probs=122.7
Q ss_pred CccCCCCeeEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCC
Q 027622 71 NTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG 150 (221)
Q Consensus 71 ~~~~~~g~~v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~G 150 (221)
++.++.+++++.+++.++|+|+++++++.+++|.+|++.+||||++|+|++||++|+++++|+++++ ++++...|++|
T Consensus 323 d~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g--~~vf~~~L~~G 400 (493)
T PLN00212 323 DTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG--KTVFNGVLRPG 400 (493)
T ss_pred CccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC--CEEEEEEEcCC
Confidence 4557889999999999999999999999999999999999999999999999999999999998764 89999999999
Q ss_pred cEEEEcCCCeEEEEeCCCCcEEEEEEEeCCCCceeeec--hhhhcCCCCCCHHHHHHhcCCCHHHHHHHHhc
Q 027622 151 DVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVITIA--NTVFGANPPINPDFLAKAFQLDVNVVKELEAK 220 (221)
Q Consensus 151 Dv~v~P~G~~H~~~N~g~~~a~~~~~~~s~~pg~~~~~--~~lf~~~p~ip~~vl~~af~~~~~~v~~l~~~ 220 (221)
|+|+||+|.+|..... ++...+++...+.++-...++ .++|.. ||++||+++|+++++++++||..
T Consensus 401 dvfVVPqg~~v~~~A~-~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n 468 (493)
T PLN00212 401 QLLIIPQHYAVLKKAE-REGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNN 468 (493)
T ss_pred CEEEECCCCeEEEeec-CCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999976543 444555544433333222222 478884 99999999999999999999875
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=1.4e-23 Score=191.10 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=126.5
Q ss_pred CCCCCCeeeecCCCCCCccCCCCeeEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEc
Q 027622 55 LAKAQDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVT 134 (221)
Q Consensus 55 ~v~~~dF~~~~~~~~~~~~~~~g~~v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~ 134 (221)
.+...-|.|+.-.++. ..|++++.+++.+||++++ +++.++++.||++.++|||. +.|++||++|++++++++
T Consensus 32 ~~p~~~~~~~~~~~~~----~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d 104 (367)
T TIGR03404 32 SVPNLKWSFSDSHNRL----ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVD 104 (367)
T ss_pred ccccceeeeccccCcc----ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEc
Confidence 3443446666544332 3577899999999999986 79999999999999999995 789999999999999998
Q ss_pred cCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEeCCC---CceeeechhhhcCCCCCCHHHHHHhcCCCH
Q 027622 135 SNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQF---PGVITIANTVFGANPPINPDFLAKAFQLDV 211 (221)
Q Consensus 135 ~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~s~~---pg~~~~~~~lf~~~p~ip~~vl~~af~~~~ 211 (221)
++ ++.+.+.|++||+++||+|.+|+++|.+ +.+.++.+|++.. ++.+.++.+ |+. +|++||+++|++++
T Consensus 105 ~~---g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~~---~p~~Vla~~f~l~~ 176 (367)
T TIGR03404 105 EN---GRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LAH---TPKDVLAKNFGVPE 176 (367)
T ss_pred CC---CcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HHh---CCHHHHHHHhCCCH
Confidence 76 7777789999999999999999999995 5677888887653 567777776 464 99999999999999
Q ss_pred HHHHHHHhc
Q 027622 212 NVVKELEAK 220 (221)
Q Consensus 212 ~~v~~l~~~ 220 (221)
+++++|+++
T Consensus 177 ~~~~~l~~~ 185 (367)
T TIGR03404 177 SAFDNLPLK 185 (367)
T ss_pred HHHHhcccc
Confidence 999999874
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.89 E-value=5.1e-23 Score=164.23 Aligned_cols=131 Identities=32% Similarity=0.452 Sum_probs=107.7
Q ss_pred ccCCCCeeEEEecccCCCCCCccc-eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCC--CCeeEEEE--
Q 027622 72 TANRLGFSVTNANVEQIPGLNTLG-ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL--NNTLIAKV-- 146 (221)
Q Consensus 72 ~~~~~g~~v~~~~~~~~P~ln~~g-is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~--~~~~~~~~-- 146 (221)
..+..+++++.++..++|++.+++ +.+.++.++||++..|||| ++.|+.||++|+++++++.+.+. ..+....+
T Consensus 9 ~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~ 87 (144)
T PF00190_consen 9 RVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVR 87 (144)
T ss_dssp EEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEE
T ss_pred cccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceee
Confidence 334567789999999999666654 5555667799999999999 89999999999999999987410 01345566
Q ss_pred eCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEeCCCCceeeechhhhcCCCCCCHHHHHHhcCCCHHHHH
Q 027622 147 LNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVITIANTVFGANPPINPDFLAKAFQLDVNVVK 215 (221)
Q Consensus 147 L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~ip~~vl~~af~~~~~~v~ 215 (221)
+++||++++|+|.+||+.|.++++...+.++.+.+|... +|+++++++|++++++++
T Consensus 88 l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~~ 144 (144)
T PF00190_consen 88 LKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEVQ 144 (144)
T ss_dssp EETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHHB
T ss_pred eecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcCC
Confidence 999999999999999999999888998889988877766 799999999999998864
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.86 E-value=4.9e-20 Score=147.33 Aligned_cols=136 Identities=40% Similarity=0.608 Sum_probs=116.6
Q ss_pred CCCCeeEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEE
Q 027622 74 NRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 153 (221)
Q Consensus 74 ~~~g~~v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~ 153 (221)
+..|++++.++...+|.+++.++.+.++.++||+..++|||+++.|++||++|++++.+.++.+ ++.+.+.+++||++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~--~~~~~~~l~~GD~~ 85 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNG--NKVYDARLREGDVF 85 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCC--CeEEEEEecCCCEE
Confidence 4556779999999999999999999999999999999999988899999999999999876532 46668999999999
Q ss_pred EEcCCCeEEEEeCCCCcEEEEEEEeCCCCceee-e--chhhhcCCCCCCHHHHHHhcCCCHHHHH
Q 027622 154 VFPIGMIHFQFNIGKTNAVAIAALSSQFPGVIT-I--ANTVFGANPPINPDFLAKAFQLDVNVVK 215 (221)
Q Consensus 154 v~P~G~~H~~~N~g~~~a~~~~~~~s~~pg~~~-~--~~~lf~~~p~ip~~vl~~af~~~~~~v~ 215 (221)
++|+|..|+..|.++++++++ ++.+++|.... + ..++|. ++++++++++|++++++++
T Consensus 86 ~ip~g~~H~~~n~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 146 (146)
T smart00835 86 VVPQGHPHFQVNSGDENLEFV-AFNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEVR 146 (146)
T ss_pred EECCCCEEEEEcCCCCCEEEE-EEecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHcC
Confidence 999999999999999999998 46667765432 2 235676 5999999999999998753
No 6
>PLN00212 glutelin; Provisional
Probab=99.80 E-value=4.7e-18 Score=159.20 Aligned_cols=140 Identities=19% Similarity=0.311 Sum_probs=113.7
Q ss_pred CCCeeEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccC-CC-CCe-----------
Q 027622 75 RLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN-QL-NNT----------- 141 (221)
Q Consensus 75 ~~g~~v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~~-~~~----------- 141 (221)
..|+ ++.....+-+-|...|+++.|+++.|+|+..||+| ++.+++||++|+++++++.++ ++ -++
T Consensus 60 se~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~ 137 (493)
T PLN00212 60 SEAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQS 137 (493)
T ss_pred ccCc-eeeecCCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccc
Confidence 3455 55555578899999999999999999999999999 699999999999999999631 00 001
Q ss_pred ---------eEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEeCCC--------Cceeeech---------------
Q 027622 142 ---------LIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQF--------PGVITIAN--------------- 189 (221)
Q Consensus 142 ---------~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~s~~--------pg~~~~~~--------------- 189 (221)
-..+.|++||++++|+|++||++|.|+++++++++++..+ +..+.++.
T Consensus 138 ~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~ 217 (493)
T PLN00212 138 QSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQ 217 (493)
T ss_pred cccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccc
Confidence 1126899999999999999999999999998888885332 33444543
Q ss_pred ----hhhcCCCCCCHHHHHHhcCCCHHHHHHHHh
Q 027622 190 ----TVFGANPPINPDFLAKAFQLDVNVVKELEA 219 (221)
Q Consensus 190 ----~lf~~~p~ip~~vl~~af~~~~~~v~~l~~ 219 (221)
++|. ++++++|+.||+++.++++||+.
T Consensus 218 ~~~~nifs---GF~~e~La~Afnv~~e~~~klq~ 248 (493)
T PLN00212 218 HSGQNIFS---GFSTELLSEALGINAQVAKRLQS 248 (493)
T ss_pred cccCchhh---cCCHHHHHHHHCCCHHHHHHHhc
Confidence 3887 69999999999999999999975
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.80 E-value=9.1e-19 Score=146.64 Aligned_cols=149 Identities=20% Similarity=0.245 Sum_probs=130.8
Q ss_pred CCCCeeeecCCCCCCccCCCCeeEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcE--EEEEEeCEEEEEEEc
Q 027622 57 KAQDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATE--ILVVLEGTLYVGFVT 134 (221)
Q Consensus 57 ~~~dF~~~~~~~~~~~~~~~g~~v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~E--i~yVl~G~~~~~~~~ 134 (221)
..+||+|..+...+.. .|+.+....+..+||- .-..+.+.||++..+||||+++| |.|||+|+.++.+.+
T Consensus 49 ~~~~~~yel~~~~~~~---~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGE---RGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeecccccc---cCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 6889999987765543 2888999999999986 45678899999999999999999 999999999999988
Q ss_pred cCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEeCCCCceeeechhhhcCCCCCCHHHHHHhcCCCHHHH
Q 027622 135 SNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVITIANTVFGANPPINPDFLAKAFQLDVNVV 214 (221)
Q Consensus 135 ~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~s~~pg~~~~~~~lf~~~p~ip~~vl~~af~~~~~~v 214 (221)
++ +++.+..+++||+++||++..|+..|.|++|.+++.++....+....+..++++ ++..+++..++.+.+..
T Consensus 121 ~~---G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~ 193 (209)
T COG2140 121 PE---GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYV 193 (209)
T ss_pred CC---CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCcccc
Confidence 86 678899999999999999999999999999999999999998999999888876 78888999998887777
Q ss_pred HHHHhc
Q 027622 215 KELEAK 220 (221)
Q Consensus 215 ~~l~~~ 220 (221)
+.++.+
T Consensus 194 D~p~~~ 199 (209)
T COG2140 194 DVPRIK 199 (209)
T ss_pred cCcccc
Confidence 766543
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.50 E-value=8.4e-14 Score=96.91 Aligned_cols=70 Identities=29% Similarity=0.395 Sum_probs=63.0
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 027622 100 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAAL 177 (221)
Q Consensus 100 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~ 177 (221)
+++++||+..++|+|+...|++||++|++++.+.++ ...+++||.+++|+|..|...|.+++++.+++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~--------~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE--------RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE--------EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE--------EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999966699999999999995422 6899999999999999999999999999998875
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.3e-12 Score=100.97 Aligned_cols=82 Identities=30% Similarity=0.269 Sum_probs=74.1
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEE
Q 027622 94 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 173 (221)
Q Consensus 94 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 173 (221)
...++.++.+.||+...+|.|.+.+|++||++|++.+.+.+. ...|++||++++|+|..|..+|.|..+..+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~--------~~~v~~gd~~~iP~g~~H~~~N~G~~~L~l 105 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE--------EVEVKAGDSVYIPAGTPHRVRNTGKIPLVL 105 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE--------EEEecCCCEEEECCCCcEEEEcCCCcceEE
Confidence 468999999999999999999989999999999999999744 589999999999999999999999999999
Q ss_pred EEEEeCCCCc
Q 027622 174 IAALSSQFPG 183 (221)
Q Consensus 174 ~~~~~s~~pg 183 (221)
+++......+
T Consensus 106 iei~~p~~~~ 115 (127)
T COG0662 106 IEVQSPPYLG 115 (127)
T ss_pred EEEecCCcCC
Confidence 9987665444
No 10
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.42 E-value=2.4e-12 Score=100.80 Aligned_cols=86 Identities=27% Similarity=0.380 Sum_probs=73.6
Q ss_pred cCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEe
Q 027622 86 EQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 165 (221)
Q Consensus 86 ~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N 165 (221)
.-.+...+..+.+.++.++||+..++|+||...+.+||++|++++++.++ .+++++||++++|+|..|+..|
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~--------~~~l~~Gd~i~ip~g~~H~~~a 104 (131)
T COG1917 33 RVLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE--------KKELKAGDVIIIPPGVVHGLKA 104 (131)
T ss_pred eeccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC--------ceEecCCCEEEECCCCeeeecc
Confidence 34454456678999999999999999999866799999999999999733 5899999999999999999999
Q ss_pred CCCCcEEEEEEEeC
Q 027622 166 IGKTNAVAIAALSS 179 (221)
Q Consensus 166 ~g~~~a~~~~~~~s 179 (221)
.++.+...++++..
T Consensus 105 ~~~~~~~~l~v~~~ 118 (131)
T COG1917 105 VEDEPMVLLLVFPL 118 (131)
T ss_pred CCCCceeEEEEeee
Confidence 99988666666654
No 11
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.40 E-value=3.6e-12 Score=99.91 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=69.7
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEE-EEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEE
Q 027622 94 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVG-FVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAV 172 (221)
Q Consensus 94 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~-~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~ 172 (221)
.++++.++.++||+..+.|+|.. .|++||++|++++. +.+. + .+.|++||++++|++..|.+.|. ++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g-----~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~ 102 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATG-----E--VHPIRPGTMYALDKHDRHYLRAG--EDMR 102 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCC-----E--EEEeCCCeEEEECCCCcEEEEcC--CCEE
Confidence 45799999999999999999974 69999999999999 5322 2 58999999999999999999997 8999
Q ss_pred EEEEEeCCCCce
Q 027622 173 AIAALSSQFPGV 184 (221)
Q Consensus 173 ~~~~~~s~~pg~ 184 (221)
++++++.+-+|.
T Consensus 103 ~l~v~tP~~~~~ 114 (125)
T PRK13290 103 LVCVFNPPLTGR 114 (125)
T ss_pred EEEEECCCCCCc
Confidence 999988655553
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.32 E-value=4e-11 Score=100.36 Aligned_cols=88 Identities=18% Similarity=0.127 Sum_probs=74.8
Q ss_pred CCCccceEEEEEEEcCCCc------CCCccCCCC--cEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeE
Q 027622 90 GLNTLGISAVRIDYAPYGQ------NPPHTHPRA--TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIH 161 (221)
Q Consensus 90 ~ln~~gis~~~v~l~pgg~------~ppH~Hp~a--~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H 161 (221)
..+..++.+....+.||.. .+.|+|++. .|+.||++|++.+.+.+.+ +......+++||+++||+|..|
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~---G~~~~~~v~pGd~v~IPpg~~H 138 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE---GEARWIEMEPGTVVYVPPYWAH 138 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC---CcEEEEEECCCCEEEECCCCcE
Confidence 3455578999999999986 577999855 4999999999999987664 3445789999999999999999
Q ss_pred EEEeCCCCcEEEEEEEeCC
Q 027622 162 FQFNIGKTNAVAIAALSSQ 180 (221)
Q Consensus 162 ~~~N~g~~~a~~~~~~~s~ 180 (221)
...|.|++++++++++...
T Consensus 139 ~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 139 RSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EeEECCCCCEEEEEEEcCC
Confidence 9999999999999988643
No 13
>PRK11171 hypothetical protein; Provisional
Probab=99.23 E-value=2.9e-10 Score=99.71 Aligned_cols=110 Identities=17% Similarity=0.097 Sum_probs=83.6
Q ss_pred CCCCCCCCCCeeeecCCCCCCccCCCCeeEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCC-CCcEEEEEEeCEEE
Q 027622 51 KDPKLAKAQDFFLSGLDKPGNTANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHP-RATEILVVLEGTLY 129 (221)
Q Consensus 51 k~~~~v~~~dF~~~~~~~~~~~~~~~g~~v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp-~a~Ei~yVl~G~~~ 129 (221)
++.+.+++++.+.+.+..-. +..++..... . .+.++.+.+++++||+....|.|+ ...|++||++|+++
T Consensus 26 ~~~a~~~p~~~v~~~lp~~~------~~~~~~L~~~---~-~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~ 95 (266)
T PRK11171 26 EAYAVIPPDDIVTSVLPGWE------NTRAWVLARP---G-LGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEIT 95 (266)
T ss_pred cCeEEECCcCEEeecCCCCC------CeEEEEEeCC---C-CCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEE
Confidence 34566677777776553222 2334433332 1 134689999999999987777775 45899999999999
Q ss_pred EEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEe
Q 027622 130 VGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALS 178 (221)
Q Consensus 130 ~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~ 178 (221)
+.+.++ ++.|++||.++||++..|.+.|.+++++.++++..
T Consensus 96 v~~~g~--------~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 96 LTLEGK--------THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK 136 (266)
T ss_pred EEECCE--------EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc
Confidence 998543 68999999999999999999999999999998763
No 14
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.23 E-value=7.1e-11 Score=94.83 Aligned_cols=84 Identities=23% Similarity=0.250 Sum_probs=70.3
Q ss_pred cCCCCCCccceEEEEEEEcCCCc-CCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCC--CeEE
Q 027622 86 EQIPGLNTLGISAVRIDYAPYGQ-NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIG--MIHF 162 (221)
Q Consensus 86 ~~~P~ln~~gis~~~v~l~pgg~-~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G--~~H~ 162 (221)
..+-||...|+.+ ..++||+. ...|||...+|++|||+|++++.+.+. .+.|++||++-||+| ..|.
T Consensus 34 G~~~Gl~~fGvn~--~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~--------e~~lrpGD~~gFpAG~~~aHh 103 (161)
T COG3837 34 GDALGLKRFGVNL--EIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG--------ETRLRPGDSAGFPAGVGNAHH 103 (161)
T ss_pred hhhcChhhcccce--EEeCCCCccccccccccCceEEEEEcCceEEEECCe--------eEEecCCceeeccCCCcceeE
Confidence 3556676555555 45789985 588999999999999999999998654 489999999999999 8999
Q ss_pred EEeCCCCcEEEEEEEeC
Q 027622 163 QFNIGKTNAVAIAALSS 179 (221)
Q Consensus 163 ~~N~g~~~a~~~~~~~s 179 (221)
+.|.++..++.+++=+-
T Consensus 104 liN~s~~~~~yL~vG~r 120 (161)
T COG3837 104 LINRSDVILRYLEVGTR 120 (161)
T ss_pred EeecCCceEEEEEeccc
Confidence 99999999999986543
No 15
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.20 E-value=1.5e-10 Score=108.83 Aligned_cols=78 Identities=24% Similarity=0.264 Sum_probs=71.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
++.+.++.++||+..++|+|++..|.+||++|++++.+.++ .+.|++||+++||+|.+|.+.|.|+++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~--------~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i 446 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDE--------TLLLTENESTYIPLGVIHRLENPGKIPLELI 446 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCE--------EEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 68899999999999899999889999999999999998644 5899999999999999999999999999999
Q ss_pred EEEeCC
Q 027622 175 AALSSQ 180 (221)
Q Consensus 175 ~~~~s~ 180 (221)
++...+
T Consensus 447 ~v~~~~ 452 (468)
T TIGR01479 447 EVQSGS 452 (468)
T ss_pred EEEcCC
Confidence 987644
No 16
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.20 E-value=2.1e-10 Score=95.02 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=65.3
Q ss_pred cceEEEEEEEcCCCcC-CCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEE
Q 027622 94 LGISAVRIDYAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAV 172 (221)
Q Consensus 94 ~gis~~~v~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~ 172 (221)
..+.+.+..++||+.. +.|+|+ +.|++||++|++++.+.++ .+.|++||.++||++.+|.+.|.+++++.
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~~~--------~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~ 175 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTINGQ--------DYHLVAGQSYAINTGIPHSFSNTSAGICR 175 (185)
T ss_pred CeeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEECCE--------EEEecCCCEEEEcCCCCeeeeCCCCCCeE
Confidence 3466777889999865 467776 7999999999999998643 58999999999999999999999999999
Q ss_pred EEEEEe
Q 027622 173 AIAALS 178 (221)
Q Consensus 173 ~~~~~~ 178 (221)
++++..
T Consensus 176 ~l~~~~ 181 (185)
T PRK09943 176 IISAHT 181 (185)
T ss_pred EEEEeC
Confidence 998764
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.17 E-value=2.6e-10 Score=107.45 Aligned_cols=78 Identities=26% Similarity=0.238 Sum_probs=70.9
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEE
Q 027622 94 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 173 (221)
Q Consensus 94 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 173 (221)
.++.+.++.++||+....|+|...+|++||++|++++.+.++ ++.|++||.++||+|.+|.++|.|++++++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~--------~~~L~~GDSi~ip~g~~H~~~N~g~~~l~i 454 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD--------IKLLGENESIYIPLGATHCLENPGKIPLDL 454 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE--------EEEecCCCEEEECCCCcEEEEcCCCCCEEE
Confidence 368889999999998888888878899999999999998654 699999999999999999999999999999
Q ss_pred EEEEeC
Q 027622 174 IAALSS 179 (221)
Q Consensus 174 ~~~~~s 179 (221)
+++...
T Consensus 455 I~V~~g 460 (478)
T PRK15460 455 IEVRSG 460 (478)
T ss_pred EEEEcC
Confidence 998754
No 18
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=6.2e-10 Score=85.67 Aligned_cols=84 Identities=23% Similarity=0.269 Sum_probs=74.2
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
+|.+-.++++||.....|-|..-+-.+||++|+..+++++.- .+..+..+||.|+||+|++|.-.|.+++++.++
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rL-----E~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~v 119 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRL-----EEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAV 119 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccce-----eeeEEecCCCeEEcCCCCCCcccccCCCCeEEE
Confidence 688999999999999999999888899999999999997532 246789999999999999999999999999998
Q ss_pred EEEeCCCCc
Q 027622 175 AALSSQFPG 183 (221)
Q Consensus 175 ~~~~s~~pg 183 (221)
.+-+..+|.
T Consensus 120 IaRsDp~~~ 128 (142)
T COG4101 120 IARSDPNPQ 128 (142)
T ss_pred EEccCCCCC
Confidence 887766654
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.08 E-value=1.2e-09 Score=88.26 Aligned_cols=78 Identities=27% Similarity=0.253 Sum_probs=71.1
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEE
Q 027622 94 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 173 (221)
Q Consensus 94 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 173 (221)
.+..+-++.+.||....+|.|.+..|..+|++|++.+.+.+. .+.+++||++++|+|..|.+.|.|+.+..+
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~--------~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~ 132 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE--------EFTLKEGDSVYIPRGAKHRIENPGKTPLEI 132 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCE--------EEEEcCCCEEEECCCCEEEEECCCCcCcEE
Confidence 468899999999999999999999999999999999998543 589999999999999999999999999999
Q ss_pred EEEEeC
Q 027622 174 IAALSS 179 (221)
Q Consensus 174 ~~~~~s 179 (221)
+.+-..
T Consensus 133 IEVq~G 138 (151)
T PF01050_consen 133 IEVQTG 138 (151)
T ss_pred EEEecC
Confidence 987543
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.00 E-value=5.7e-09 Score=91.30 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=65.8
Q ss_pred ceEEEEEEEcCCCcC-CCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEE
Q 027622 95 GISAVRIDYAPYGQN-PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 173 (221)
Q Consensus 95 gis~~~v~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 173 (221)
.+.+.+++++||+.. .+|+|+..+|++||++|++++.+.++ ++.|++||.+++|+|..|.+.|.+++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~--------~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~ 128 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGE--------THELREGGYAYLPPGSKWTLANAQAEDARF 128 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCE--------EEEECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 588999999998765 45667755899999999999997543 589999999999999999999999999999
Q ss_pred EEEEe
Q 027622 174 IAALS 178 (221)
Q Consensus 174 ~~~~~ 178 (221)
+++-.
T Consensus 129 l~v~k 133 (260)
T TIGR03214 129 FLYKK 133 (260)
T ss_pred EEEEe
Confidence 87663
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.99 E-value=3.4e-09 Score=92.66 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=63.4
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
++.+.+++++||+..+.|.|...+|.+||++|++.+..+++ ...+++||++++|++.+|+++|.|+++.+++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~--------~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l 249 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNN--------WVPVEAGDYIWMGAYCPQACYAGGRGEFRYL 249 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCE--------EEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence 57788899999999996444447899999999999987543 5899999999999999999999999999887
Q ss_pred E
Q 027622 175 A 175 (221)
Q Consensus 175 ~ 175 (221)
-
T Consensus 250 ~ 250 (260)
T TIGR03214 250 L 250 (260)
T ss_pred E
Confidence 4
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.95 E-value=5.5e-09 Score=91.63 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=64.8
Q ss_pred ceEEEEEEEcCCCcCCCc-cCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEE
Q 027622 95 GISAVRIDYAPYGQNPPH-THPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 173 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH-~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 173 (221)
.+.+.+++++||+..+.| +|. .+|.+||++|++++.++++ .+.|++||++.|+++..|+++|.|++++++
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~~~~--------~~~l~~GD~i~~~~~~~h~~~N~g~~~~~y 253 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRLNND--------WVEVEAGDFIWMRAYCPQACYAGGPGPFRY 253 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEECCE--------EEEeCCCCEEEECCCCCEEEECCCCCcEEE
Confidence 368899999999999885 554 8899999999999997544 689999999999999999999999999998
Q ss_pred EEE
Q 027622 174 IAA 176 (221)
Q Consensus 174 ~~~ 176 (221)
+..
T Consensus 254 l~~ 256 (266)
T PRK11171 254 LLY 256 (266)
T ss_pred EEE
Confidence 853
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.77 E-value=1.1e-07 Score=75.92 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=60.6
Q ss_pred CCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCC-CCeeEEEEeCCCcEEEEcCCCeEEEEeCC
Q 027622 89 PGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL-NNTLIAKVLNKGDVFVFPIGMIHFQFNIG 167 (221)
Q Consensus 89 P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~~~~~L~~GDv~v~P~G~~H~~~N~g 167 (221)
-|+. .+.+..-++.||...|+|-|. .+|+++|++|+++..+...... .++...+.+-+++.|.||.+..|..+|.+
T Consensus 39 hGmk--evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 39 HGMK--EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp H--S--SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred cCce--eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 4444 468888899999999999997 8999999999999998754310 14455789999999999999999999999
Q ss_pred -CCcEEEEEEEeCCCCceeeechh
Q 027622 168 -KTNAVAIAALSSQFPGVITIANT 190 (221)
Q Consensus 168 -~~~a~~~~~~~s~~pg~~~~~~~ 190 (221)
.+++.++++++..--..+...+|
T Consensus 116 e~eDlqvlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 116 EHEDLQVLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp SSS-EEEEEEEESSS--EEEESST
T ss_pred CCcceEEEEEecCCCeEEEEeccc
Confidence 48899998876554455555555
No 24
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.74 E-value=6.4e-08 Score=79.81 Aligned_cols=70 Identities=17% Similarity=0.319 Sum_probs=56.1
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 027622 100 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAA 176 (221)
Q Consensus 100 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~ 176 (221)
++.=.||.....|+|+ ++|++|+++|++++.+.+. ++.....|++||++++|+|+.|..+.. +..+.+.+
T Consensus 38 mvvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 38 MVVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQED----GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred EEEccCCcccccccCC-CceEEEEECCeEEEEEEcC----CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 3444777788999998 8999999999999999875 444578999999999999999988653 44444433
No 25
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.70 E-value=1.3e-07 Score=76.75 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=50.6
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCC
Q 027622 104 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 104 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~ 168 (221)
.||.....|.|+ .+|++|+++|++.+.+.+. ++.....|++||++++|+|+.|.....++
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE----GKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC----CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 566667789987 8999999999999998775 44457999999999999999998876433
No 26
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.61 E-value=6.7e-07 Score=74.34 Aligned_cols=86 Identities=24% Similarity=0.248 Sum_probs=56.9
Q ss_pred CCccceEEEEEEEcCCCc------CCCccCCC------CcEEEEEEeCEEEEEEEccCCCCC----eeEEEEeCCCcEEE
Q 027622 91 LNTLGISAVRIDYAPYGQ------NPPHTHPR------ATEILVVLEGTLYVGFVTSNQLNN----TLIAKVLNKGDVFV 154 (221)
Q Consensus 91 ln~~gis~~~v~l~pgg~------~ppH~Hp~------a~Ei~yVl~G~~~~~~~~~~~~~~----~~~~~~L~~GDv~v 154 (221)
+...++......+.||.+ ..=|+|+. -.|+.+|++|++.+-+-+.. + +++...+++||+++
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~---~~~~~~~~~v~~~~G~~v~ 121 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEE---GDDVGDVIAVEAKPGDVVY 121 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TT---S-----EEEEEE-TTEEEE
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecC---CCcceeEEEEEeCCCCEEE
Confidence 334467778888888753 35599997 68999999999999998765 4 67789999999999
Q ss_pred EcCCCeEEEEeCCCCcEEEEEEEeC
Q 027622 155 FPIGMIHFQFNIGKTNAVAIAALSS 179 (221)
Q Consensus 155 ~P~G~~H~~~N~g~~~a~~~~~~~s 179 (221)
||++..|...|.|+++.++.+...+
T Consensus 122 IPp~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 122 IPPGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp E-TT-EEEEEE-SSS-EEEEEEEET
T ss_pred ECCCceEEEEECCCCcEEEEEEEec
Confidence 9999999999999999988877654
No 27
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.59 E-value=4.9e-07 Score=66.29 Aligned_cols=73 Identities=25% Similarity=0.370 Sum_probs=55.2
Q ss_pred ceEEEEEEEcCCCcCCC-ccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEE
Q 027622 95 GISAVRIDYAPYGQNPP-HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 173 (221)
Q Consensus 95 gis~~~v~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 173 (221)
.++...++++||+.-++ +.+ +..-++||++|.+++.+.++ ++.+.+|+++.+|+|-.-.++|.++++|++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti~~~--------~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~L 81 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTIHET--------SFVVTKGGSFQVPRGNYYSIKNIGNEEAKL 81 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE---SEEEEEEEEESEEEEEETTE--------EEEEETT-EEEE-TT-EEEEEE-SSS-EEE
T ss_pred CceeEEEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEEcCc--------EEEEeCCCEEEECCCCEEEEEECCCCcEEE
Confidence 46788999999997654 566 47899999999999999644 589999999999999999999999999998
Q ss_pred EEE
Q 027622 174 IAA 176 (221)
Q Consensus 174 ~~~ 176 (221)
+-+
T Consensus 82 fF~ 84 (85)
T PF11699_consen 82 FFV 84 (85)
T ss_dssp EEE
T ss_pred EEe
Confidence 743
No 28
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.52 E-value=5.3e-07 Score=68.47 Aligned_cols=64 Identities=27% Similarity=0.281 Sum_probs=46.7
Q ss_pred CCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 027622 105 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAAL 177 (221)
Q Consensus 105 pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~ 177 (221)
++...++|+|+ .-|+.||++|++++.+.++ .+.+++||++++|+|.+|.....++++...+.+.
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~~~--------~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~ 75 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHIDGQ--------EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY 75 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEETTE--------EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEECCE--------EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence 44566899998 8999999999999987544 5999999999999999999988887676665544
No 29
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.47 E-value=6.7e-07 Score=65.86 Aligned_cols=67 Identities=25% Similarity=0.383 Sum_probs=53.0
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
|..+..+.++||+..|.|.|+ +.|.+|||+|++.. .. ..+.+||.++.|+|..|.... ++.+.++
T Consensus 23 g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~~--------~~~~~G~~~~~p~g~~h~~~s--~~gc~~~ 87 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----GD--------GRYGAGDWLRLPPGSSHTPRS--DEGCLIL 87 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----TT--------CEEETTEEEEE-TTEEEEEEE--SSCEEEE
T ss_pred cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----CC--------ccCCCCeEEEeCCCCccccCc--CCCEEEE
Confidence 567888999999999999998 78888999999983 21 246999999999999999874 5667776
Q ss_pred EE
Q 027622 175 AA 176 (221)
Q Consensus 175 ~~ 176 (221)
..
T Consensus 88 vk 89 (91)
T PF12973_consen 88 VK 89 (91)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 30
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.44 E-value=8.1e-07 Score=75.71 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=62.7
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 027622 96 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIA 175 (221)
Q Consensus 96 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~ 175 (221)
..+..+.++||+..|.|.|. +.|+.+||+|++. ++. ..+.+||++..|.|..|...+.+++++++++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de~--------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~ 193 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DET--------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLA 193 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cCC--------CccCCCeEEECCCCCCcCcccCCCCCeEEEE
Confidence 46778889999999999996 8999999999964 442 4689999999999999999999999999998
Q ss_pred EEeCC
Q 027622 176 ALSSQ 180 (221)
Q Consensus 176 ~~~s~ 180 (221)
+...+
T Consensus 194 v~dap 198 (215)
T TIGR02451 194 VLDAP 198 (215)
T ss_pred EecCC
Confidence 87644
No 31
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.40 E-value=3.7e-06 Score=72.01 Aligned_cols=70 Identities=20% Similarity=0.106 Sum_probs=51.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
.|++..+.++. ...+||-+..|+.||++|++++.+.++ ++.+++||+++||+|..|.+...+ .+.++
T Consensus 156 ~m~aGf~~~~~---~sf~wtl~~dEi~YVLEGe~~l~IdG~--------t~~l~pGDvlfIPkGs~~hf~tp~--~aRfl 222 (233)
T PRK15457 156 SMAAGFMQWEN---AFFPWTLNYDEIDMVLEGELHVRHEGE--------TMIAKAGDVMFIPKGSSIEFGTPS--SVRFL 222 (233)
T ss_pred ceeeEEEEEec---CccceeccceEEEEEEEeEEEEEECCE--------EEEeCCCcEEEECCCCeEEecCCC--CeeEE
Confidence 35566666654 334477778999999999999998533 699999999999999995554443 56665
Q ss_pred EEE
Q 027622 175 AAL 177 (221)
Q Consensus 175 ~~~ 177 (221)
.+.
T Consensus 223 yV~ 225 (233)
T PRK15457 223 YVA 225 (233)
T ss_pred EEE
Confidence 544
No 32
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.37 E-value=1.7e-06 Score=76.91 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=51.5
Q ss_pred EEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCC
Q 027622 98 AVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 98 ~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~ 168 (221)
++...-+|..+.++|||. .-|+.|+++|++.+.+.+. ...+++||++++|+|.+|.....++
T Consensus 28 ~~~~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~g~--------~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 28 LEIEFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLINNE--------KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred eEEEeeCCCCCCCCCccc-cEEEEEecCCcEEEEECCE--------EEEEcCCcEEEEecCCcccccccCC
Confidence 344456778889999997 8999999999999887543 5899999999999999998765544
No 33
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.30 E-value=7.1e-06 Score=66.79 Aligned_cols=72 Identities=25% Similarity=0.319 Sum_probs=51.1
Q ss_pred cCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEeCCCCce
Q 027622 108 QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGV 184 (221)
Q Consensus 108 ~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~s~~pg~ 184 (221)
....|.|. ..|+-|+++|++++.+-..+ ++.....+++||.+++|+|+.|++.-.......++=.| ...||.
T Consensus 84 f~~EH~H~-deEvR~i~~G~g~Fdvr~~~---~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF-~~~~gW 155 (157)
T PF03079_consen 84 FFEEHTHE-DEEVRYIVDGSGYFDVRDGD---DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLF-KDEPGW 155 (157)
T ss_dssp HCS-EEES-S-EEEEEEECEEEEEEE-TT---CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEE-SSCGGE
T ss_pred hheeEecC-hheEEEEeCcEEEEEEEcCC---CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEee-cCCCCc
Confidence 34789998 79999999999999998764 66666899999999999999999975444555555444 455553
No 34
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.16 E-value=1.5e-05 Score=69.24 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=44.0
Q ss_pred CCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeC
Q 027622 106 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 166 (221)
Q Consensus 106 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 166 (221)
+...++|||. ..|++||++|++++.+.+. .+.+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~~~--------~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEINGK--------RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEECCE--------EEEECCCcEEEeCCCCccceeee
Confidence 4456899996 8999999999999988533 58999999999999999976443
No 35
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.12 E-value=3e-05 Score=63.40 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=59.7
Q ss_pred CCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEeCCCCceeee
Q 027622 110 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVITI 187 (221)
Q Consensus 110 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~s~~pg~~~~ 187 (221)
.-|.|. ..|+.|++.|.+.+.+...+ ++++...+.+||.+.+|+|+-||+.-..+-..+++=.| ...||.+.+
T Consensus 89 ~EH~H~-d~EvRy~vaG~GiF~v~~~d---~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF-~~~~gWVa~ 161 (181)
T COG1791 89 QEHLHT-DDEVRYFVAGEGIFDVHSPD---GKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLF-TEPEGWVAI 161 (181)
T ss_pred HHhccC-CceEEEEEecceEEEEECCC---CcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEe-eCCCCceee
Confidence 459997 89999999999999998875 79999999999999999999999965545555555444 467787744
No 36
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.08 E-value=1.3e-05 Score=70.24 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=49.8
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCC
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~ 168 (221)
.+.+.+ ..+....++|||. ..|++||++|++++.+++. .+.+++||++++|+|.+|.+...++
T Consensus 19 ~~~~~~--~~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~~~--------~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 19 PVAVTN--RYPQETFVEHTHQ-FCEIVIVWRGNGLHVLNDH--------PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred ceEEec--CCCCCCCcccccc-ceeEEEEecCceEEEECCe--------eeeecCCeEEEEcCCCcccccccCC
Confidence 344444 2344457799996 8999999999999998543 5899999999999999999875443
No 37
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.07 E-value=1.9e-05 Score=70.41 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=46.7
Q ss_pred CCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCC
Q 027622 105 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 105 pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~ 168 (221)
|....++|||+ ..|++||++|++.+.+.+. .+.+++||++++|+|.+|......+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~~~--------~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLNDR--------PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEECCE--------EEeecCCeEEEECCCCeecccccCC
Confidence 33456899997 8999999999999888644 5899999999999999999876544
No 38
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.04 E-value=1.5e-05 Score=69.45 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=48.2
Q ss_pred CCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEE
Q 027622 106 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 173 (221)
Q Consensus 106 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 173 (221)
+...++|||.+.-|++|+++|++++.+.+. ...+++||++++|+|..|.....++....+
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~~~--------~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~ 92 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLDEH--------EYSEYAPCFFLTPPSVPHGFVTDLDADGHV 92 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEECCE--------EEEecCCeEEEeCCCCccccccCCCcceEE
Confidence 346799999756899999999999887533 589999999999999999987655444333
No 39
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.03 E-value=2.8e-05 Score=70.38 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=63.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
.|.+..-.+.||...++|-|. +.-+.+|++|++....++. + ...+++||+|+.|.+..|...|.|+++++.+
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~g-----~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wl 151 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVDG-----E--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWL 151 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEECC-----E--EEeeeCCCEEEeCCCeeEecccCCCCcEEEE
Confidence 455566679999999999997 8999999999996565554 2 5899999999999999999999999997766
Q ss_pred EEEe
Q 027622 175 AALS 178 (221)
Q Consensus 175 ~~~~ 178 (221)
..++
T Consensus 152 d~lD 155 (335)
T TIGR02272 152 DGLD 155 (335)
T ss_pred ecCC
Confidence 5543
No 40
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.99 E-value=4.2e-05 Score=60.33 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=53.7
Q ss_pred CeeEEEecccCCCCCCccceEEEEE-EEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCc-EEE
Q 027622 77 GFSVTNANVEQIPGLNTLGISAVRI-DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGD-VFV 154 (221)
Q Consensus 77 g~~v~~~~~~~~P~ln~~gis~~~v-~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GD-v~v 154 (221)
.+.++.+....-....-. .+..+ ..++|....+|+|....|+++|++|++++.+.+.. ....+.|...+ .+.
T Consensus 15 RG~L~~~e~~~~ipf~i~--rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~----~~~~~~L~~~~~~L~ 88 (131)
T PF05523_consen 15 RGSLSVIERFDDIPFEIK--RVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR----EEEEFILDEPNKGLY 88 (131)
T ss_dssp TEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-----EEEEEE--TTEEEE
T ss_pred CCcEEEEeccCCCCCCcc--EEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCC----CcEEEEECCCCeEEE
Confidence 344665554432222211 23333 34555568999999999999999999999987653 22467777765 999
Q ss_pred EcCCCeEEEEeCCCCcEEEEEEEeCC
Q 027622 155 FPIGMIHFQFNIGKTNAVAIAALSSQ 180 (221)
Q Consensus 155 ~P~G~~H~~~N~g~~~a~~~~~~~s~ 180 (221)
+|+|..|.+.|.+.. +++++ +.+.
T Consensus 89 Ippg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 89 IPPGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp E-TT-EEEEE---TT--EEEE-EESS
T ss_pred ECCchhhHhhccCCC-cEEEE-EcCC
Confidence 999999999999877 76664 6554
No 41
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.94 E-value=0.00015 Score=56.57 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=71.6
Q ss_pred CccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcE
Q 027622 92 NTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNA 171 (221)
Q Consensus 92 n~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a 171 (221)
.+.|+|+-...+.+|.....|+-. --|-+|+++|++++.-.+. ++ .+.+++|.++...+.-.|..+... ++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~~----G~--~~~i~pGt~YaLd~hD~H~lra~~--dm 101 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLDT----GE--VHPIKPGTMYALDKHDRHYLRAKT--DM 101 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEccC----Cc--EEEcCCCeEEecCCCccEEEEecC--CE
Confidence 456899999999999999999874 6899999999999998755 34 689999999999999999997654 89
Q ss_pred EEEEEEeCCCCc
Q 027622 172 VAIAALSSQFPG 183 (221)
Q Consensus 172 ~~~~~~~s~~pg 183 (221)
.++|+|+.+--|
T Consensus 102 ~~vCVFnPpltG 113 (126)
T PF06339_consen 102 RLVCVFNPPLTG 113 (126)
T ss_pred EEEEEcCCCCcC
Confidence 999999876444
No 42
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.92 E-value=2.2e-05 Score=69.56 Aligned_cols=116 Identities=18% Similarity=0.152 Sum_probs=86.9
Q ss_pred CCCCCCCeeeecC----CCCCCccCCCCeeEEEecccCCCCCCccc-----eEEEEEEEcCCCcCCCccCCCCcEEEEEE
Q 027622 54 KLAKAQDFFLSGL----DKPGNTANRLGFSVTNANVEQIPGLNTLG-----ISAVRIDYAPYGQNPPHTHPRATEILVVL 124 (221)
Q Consensus 54 ~~v~~~dF~~~~~----~~~~~~~~~~g~~v~~~~~~~~P~ln~~g-----is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl 124 (221)
....+.-|.|.-+ -+.+..-...++ ++.+-.-+-|+|+++. +.+..--+.||...|.|.|. ..-+-||+
T Consensus 42 ~~~vp~lW~~~~ir~ll~~sgeli~~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvv 119 (351)
T COG3435 42 PDCVPALWKYEEIRPLLLRSGELISAREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVV 119 (351)
T ss_pred CccccccccHHHHHHHHHHhhhccCcccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEE
Confidence 3344455556432 223332223333 6777778889998874 22333358999999999997 78999999
Q ss_pred eCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEe
Q 027622 125 EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALS 178 (221)
Q Consensus 125 ~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~ 178 (221)
+|++-+++++.. ...+++||.++-|++..|..-|.|++|++.+-.+.
T Consensus 120 eG~Ga~T~VdGe-------r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 120 EGKGAYTVVDGE-------RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred eccceeEeecCc-------eeeccCCCEEEccCceeccCCCCCCCceEEEcccc
Confidence 999999988763 47899999999999999999999999999887764
No 43
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.91 E-value=3.9e-05 Score=60.78 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=51.7
Q ss_pred CCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEe
Q 027622 109 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALS 178 (221)
Q Consensus 109 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~ 178 (221)
.--|+|.++.|++.|++|+..+.+.... +. ...+.+||++++|+|+-|.- +....+..++.++.
T Consensus 56 ~yHHYHs~aHEVl~vlrgqA~l~iGG~~---G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaYp 119 (163)
T COG4297 56 NYHHYHSGAHEVLGVLRGQAGLQIGGAD---GQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAYP 119 (163)
T ss_pred ccccccCCcceEEEEecceeEEEecCCC---Cc--eeeecCCCEEEEecCccccc-ccCCCCeEEEcccC
Confidence 3458999999999999999999998775 33 57899999999999999965 44555666665553
No 44
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.88 E-value=5.9e-05 Score=65.65 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=46.6
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCC
Q 027622 104 APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 104 ~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~ 168 (221)
.|+...++|||. .-|++||++|++++.+.+. .+.+++||++++|+|.+|.....++
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~~~--------~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVLNER--------PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEECCE--------EEeecCCcEEEECCCCcccccccCC
Confidence 444557899997 8999999999999987543 5899999999999999998765443
No 45
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.86 E-value=0.00019 Score=57.66 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=51.3
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEe
Q 027622 99 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALS 178 (221)
Q Consensus 99 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~ 178 (221)
..+.-.|+...--|..+ ++|++|-++|...+.+.++ ++.....+++||+|+.|++++|+-+-.. ..+.+++-.
T Consensus 36 VmvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~----g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr 108 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED----GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIER 108 (151)
T ss_dssp EEEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET----TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE
T ss_pred EEEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC----CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEe
Confidence 44556777788889998 8999999999999999886 6667899999999999999999977654 445554444
Q ss_pred CCCCce
Q 027622 179 SQFPGV 184 (221)
Q Consensus 179 s~~pg~ 184 (221)
...+|.
T Consensus 109 ~R~~~~ 114 (151)
T PF06052_consen 109 KRPEGE 114 (151)
T ss_dssp ---TTS
T ss_pred ccCCCC
Confidence 444443
No 46
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.86 E-value=3.6e-05 Score=66.59 Aligned_cols=53 Identities=26% Similarity=0.238 Sum_probs=45.8
Q ss_pred CCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeC
Q 027622 105 PYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 166 (221)
Q Consensus 105 pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 166 (221)
+....++|||. ..|++||++|.+++.+.+. .+.+++||++++|+|..|.....
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~~~--------~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFNGQ--------PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEecCC--------cccccCCcEEEECCCccchhhhc
Confidence 44567899996 8999999999999998655 48899999999999999987654
No 47
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.85 E-value=4.2e-05 Score=66.66 Aligned_cols=73 Identities=30% Similarity=0.367 Sum_probs=46.9
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEE
Q 027622 94 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 173 (221)
Q Consensus 94 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 173 (221)
.|-+..|+.+++|-..|||+|. +++-+|||+|.+..+ + .+....-|.+|..+..|+|..|+....+.+.+.+
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~--~-----~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~ 105 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG--D-----PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLF 105 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET--T-----EE-----E-TTEEEEE-TT-EEEETTS-EE-EEE
T ss_pred CCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC--C-----CcccceecCCCceEeccCCCceeeeccCccEEEE
Confidence 4778999999999999999997 899999999987753 2 2333567999999999999999886665554444
Q ss_pred E
Q 027622 174 I 174 (221)
Q Consensus 174 ~ 174 (221)
+
T Consensus 106 ~ 106 (251)
T PF14499_consen 106 I 106 (251)
T ss_dssp E
T ss_pred E
Confidence 3
No 48
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.81 E-value=5.3e-05 Score=53.86 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=42.3
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEE
Q 027622 96 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 163 (221)
Q Consensus 96 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~ 163 (221)
++....+-.||. .+.++. ..|++|||+|++++...+. . ++++++||++++|+|..-.+
T Consensus 7 ~~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~~~G-----~--~~~~~aGD~~~~p~G~~~~w 64 (74)
T PF05899_consen 7 FSAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITDEDG-----E--TVTFKAGDAFFLPKGWTGTW 64 (74)
T ss_dssp EEEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEETTT-----E--EEEEETTEEEEE-TTEEEEE
T ss_pred EEEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEECCC-----C--EEEEcCCcEEEECCCCEEEE
Confidence 455666677765 333443 4999999999999986432 2 58999999999999986544
No 49
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.75 E-value=5.7e-05 Score=61.46 Aligned_cols=56 Identities=30% Similarity=0.424 Sum_probs=49.4
Q ss_pred cCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCC
Q 027622 108 QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIG 167 (221)
Q Consensus 108 ~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g 167 (221)
....|.|+ .+||-||++|++++-+-+.+ ++.+..-+++||.+++|+|+-|.+.-..
T Consensus 85 FfEEhlh~-deeiR~il~GtgYfDVrd~d---d~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 85 FFEEHLHE-DEEIRYILEGTGYFDVRDKD---DQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred HHHHhcCc-hhheEEEeecceEEeeccCC---CCEEEEEEecCCEEEecCcceeeeecCc
Confidence 34789998 79999999999999998886 7788899999999999999999985443
No 50
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.67 E-value=0.00041 Score=59.07 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=64.6
Q ss_pred eEEEEEEEcCCC-cCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 96 ISAVRIDYAPYG-QNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 96 is~~~v~l~pgg-~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
++-..+++.|+| ...+-.-++++-++||++|++.+.+.++ ++.|++|+..++|+|..|..+|...+++.+.
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~--------th~l~eggyaylPpgs~~~~~N~~~~~~rfh 132 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK--------THALREGGYAYLPPGSGWTLRNAQKEDSRFH 132 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe--------EEEeccCCeEEeCCCCcceEeeccCCceEEE
Confidence 455678897876 6677778889999999999999998644 6899999999999999999999999999988
Q ss_pred EEEe
Q 027622 175 AALS 178 (221)
Q Consensus 175 ~~~~ 178 (221)
.+-.
T Consensus 133 w~rk 136 (264)
T COG3257 133 WIRK 136 (264)
T ss_pred EEee
Confidence 7654
No 51
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.54 E-value=0.0004 Score=63.00 Aligned_cols=86 Identities=17% Similarity=0.081 Sum_probs=63.6
Q ss_pred CeeEEEecccCCC-CCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEE
Q 027622 77 GFSVTNANVEQIP-GLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 155 (221)
Q Consensus 77 g~~v~~~~~~~~P-~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~ 155 (221)
|..+.-++..+=+ ...+++..+ ..+++|....+|-|. ...+++|++|+++..++++ +...++||+|++
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig~~--------~~~W~~gD~f~v 300 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIGDA--------VFRFSPKDVFVV 300 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEECCE--------EEEecCCCEEEE
Confidence 4445566654444 334455444 457889999999996 7999999999999998543 589999999999
Q ss_pred cCCCeEEEEeCCCCcEEEEE
Q 027622 156 PIGMIHFQFNIGKTNAVAIA 175 (221)
Q Consensus 156 P~G~~H~~~N~g~~~a~~~~ 175 (221)
|....|...|. +++++|.
T Consensus 301 PsW~~~~h~a~--~da~Lf~ 318 (335)
T TIGR02272 301 PSWHPVRFEAS--DDAVLFS 318 (335)
T ss_pred CCCCcEecccC--CCeEEEE
Confidence 99988877664 4565553
No 52
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.35 E-value=0.00041 Score=56.13 Aligned_cols=68 Identities=24% Similarity=0.134 Sum_probs=45.0
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 027622 96 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIA 175 (221)
Q Consensus 96 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~ 175 (221)
+++..++++.. +.-|.-.-+|+.||++|++.+... ++ ++..++||+++||+|.--.+... ..+.++.
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~------G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Y 143 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID------GQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFY 143 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET------TE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC------CE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEE
Confidence 45555566653 456777789999999999998843 22 68999999999999986655433 2355444
Q ss_pred E
Q 027622 176 A 176 (221)
Q Consensus 176 ~ 176 (221)
+
T Consensus 144 v 144 (152)
T PF06249_consen 144 V 144 (152)
T ss_dssp E
T ss_pred E
Confidence 3
No 53
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.19 E-value=0.004 Score=51.45 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=57.0
Q ss_pred CCCcCCCccCCCC-cEEEEEEeCEEEEEEEccCCCC---CeeEEEEeCCC--cEEEEcCCCeEEEEeCCCCcEEEEE
Q 027622 105 PYGQNPPHTHPRA-TEILVVLEGTLYVGFVTSNQLN---NTLIAKVLNKG--DVFVFPIGMIHFQFNIGKTNAVAIA 175 (221)
Q Consensus 105 pgg~~ppH~Hp~a-~Ei~yVl~G~~~~~~~~~~~~~---~~~~~~~L~~G--Dv~v~P~G~~H~~~N~g~~~a~~~~ 175 (221)
+|-+..+|+|.+. .+++.|++|++....+|-..++ ++....+|.+- ..+++|+|..|.+++.+++..+++.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~ 130 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK 130 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence 8889999999888 8999999999998888743211 24556677766 7999999999999999998744443
No 54
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0051 Score=49.69 Aligned_cols=68 Identities=25% Similarity=0.195 Sum_probs=49.7
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
.+++...++++ ...|+ --+-+|+-|||+|++.+...+. +..-++||++++|+|.---+.-.|. |.++
T Consensus 99 ~l~aG~m~~~~-~tf~w--tl~yDe~d~VlEGrL~V~~~g~--------tv~a~aGDvifiPKgssIefst~ge--a~fl 165 (176)
T COG4766 99 RLGAGLMEMKN-TTFPW--TLNYDEIDYVLEGRLHVRIDGR--------TVIAGAGDVIFIPKGSSIEFSTTGE--AKFL 165 (176)
T ss_pred ccccceeeecc-ccCcc--eecccceeEEEeeeEEEEEcCC--------eEecCCCcEEEecCCCeEEEeccce--EEEE
Confidence 35666677777 44444 3447999999999999987644 5789999999999998776654443 5544
Q ss_pred E
Q 027622 175 A 175 (221)
Q Consensus 175 ~ 175 (221)
-
T Consensus 166 y 166 (176)
T COG4766 166 Y 166 (176)
T ss_pred E
Confidence 3
No 55
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.91 E-value=0.0018 Score=50.19 Aligned_cols=60 Identities=22% Similarity=0.188 Sum_probs=44.8
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEe
Q 027622 96 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 165 (221)
Q Consensus 96 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N 165 (221)
+....-+-.||. .|++-...|+.++|+|++++.-.+ ++ ...+++||+++||+|..=.++-
T Consensus 45 ~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d~-----Ge--~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 45 VETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPDG-----GE--PVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred eeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECCC-----Ce--EEEEcCCCEEEECCCCeEEEEE
Confidence 455555555654 466666799999999999988433 33 5899999999999998765543
No 56
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.91 E-value=0.02 Score=47.19 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=57.6
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCC-CCee----EEEEeCCCcEEEEcCCCeEEEEeCC-C
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL-NNTL----IAKVLNKGDVFVFPIGMIHFQFNIG-K 168 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~-~~~~----~~~~L~~GDv~v~P~G~~H~~~N~g-~ 168 (221)
.+++..+...||...+.|=|..+.=++.|++|+++-.......+ +... ....+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 46788889999999999999866678889999987766543311 0111 2345778888899999999999987 8
Q ss_pred CcEEEEEEEeCC
Q 027622 169 TNAVAIAALSSQ 180 (221)
Q Consensus 169 ~~a~~~~~~~s~ 180 (221)
++++-+=+++.+
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 888888777644
No 57
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.70 E-value=0.013 Score=48.65 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=59.0
Q ss_pred cCCCcCCCccCC--CCcEEEEEEeCEEEEEEEccCCC---CCeeEEEEeCC--CcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 027622 104 APYGQNPPHTHP--RATEILVVLEGTLYVGFVTSNQL---NNTLIAKVLNK--GDVFVFPIGMIHFQFNIGKTNAVAIAA 176 (221)
Q Consensus 104 ~pgg~~ppH~Hp--~a~Ei~yVl~G~~~~~~~~~~~~---~~~~~~~~L~~--GDv~v~P~G~~H~~~N~g~~~a~~~~~ 176 (221)
.+|.+..+|.|. ....+++|++|++..-++|--.+ -++.....|.+ +..++||+|..|.+...++. +.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 568889999983 36899999999999988875322 14666778887 55999999999999999876 443333
Q ss_pred EeC-CCCce
Q 027622 177 LSS-QFPGV 184 (221)
Q Consensus 177 ~~s-~~pg~ 184 (221)
.+. -+|+.
T Consensus 131 ~~~~y~p~~ 139 (176)
T TIGR01221 131 CTDYYAPEY 139 (176)
T ss_pred CCCCcCccc
Confidence 332 24544
No 58
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.65 E-value=0.0099 Score=49.24 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=56.5
Q ss_pred cCCCcCCCccCCCC---cEEEEEEeCEEEEEEEccCC---CCCeeEEEEeCCCc--EEEEcCCCeEEEEeCCCCcEEEEE
Q 027622 104 APYGQNPPHTHPRA---TEILVVLEGTLYVGFVTSNQ---LNNTLIAKVLNKGD--VFVFPIGMIHFQFNIGKTNAVAIA 175 (221)
Q Consensus 104 ~pgg~~ppH~Hp~a---~Ei~yVl~G~~~~~~~~~~~---~~~~~~~~~L~~GD--v~v~P~G~~H~~~N~g~~~a~~~~ 175 (221)
.+|.+..+|+|... ..++.|++|++..-++|--. .=++.....|.+++ .++||+|..|.+...+++..+++-
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~ 130 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYK 130 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEe
Confidence 34888999999765 68999999999988887321 12567788898886 799999999999999877444443
Q ss_pred EEeCCCCce
Q 027622 176 ALSSQFPGV 184 (221)
Q Consensus 176 ~~~s~~pg~ 184 (221)
.-..-+|+.
T Consensus 131 ~t~~y~p~~ 139 (176)
T PF00908_consen 131 VTNYYDPED 139 (176)
T ss_dssp ESS---GGG
T ss_pred cCCccCccc
Confidence 322234543
No 59
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.20 E-value=0.016 Score=51.71 Aligned_cols=64 Identities=27% Similarity=0.274 Sum_probs=54.7
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 027622 102 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIA 175 (221)
Q Consensus 102 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~ 175 (221)
-++||-...+|-|- .+-+.-|.+|+++..+++. ++...+||+|++|.=..|...|. .+++.+|+
T Consensus 267 lL~~Gf~~~~~r~t-~s~iy~V~eGsg~~~Ig~~--------rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFs 330 (351)
T COG3435 267 LLPPGFHGKAHRHT-DSTIYHVVEGSGYTIIGGE--------RFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFS 330 (351)
T ss_pred hcCCcccCCceecc-CCEEEEEEecceeEEECCE--------EeeccCCCEEEccCcceeecccC-CcceEEEe
Confidence 47888888999886 6788889999999998644 69999999999999999999875 77787775
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.02 E-value=0.035 Score=46.74 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=49.9
Q ss_pred EEEEEEcC-CCcCCCccCCCCcEEEEEEeCEEEEEEEccCC--------------------------------CCCeeEE
Q 027622 98 AVRIDYAP-YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQ--------------------------------LNNTLIA 144 (221)
Q Consensus 98 ~~~v~l~p-gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~--------------------------------~~~~~~~ 144 (221)
...+-+.+ |...++|+.+ ..-++.+++|+=++.+..+.. ..-+.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 44566666 5578999987 778999999999988875431 0114678
Q ss_pred EEeCCCcEEEEcCCCeEEEEeCCCCc
Q 027622 145 KVLNKGDVFVFPIGMIHFQFNIGKTN 170 (221)
Q Consensus 145 ~~L~~GDv~v~P~G~~H~~~N~g~~~ 170 (221)
.+|++||+++||+|..|+.+|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999994443
No 61
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.00 E-value=0.073 Score=49.78 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=39.3
Q ss_pred CCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEe
Q 027622 110 PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALS 178 (221)
Q Consensus 110 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~ 178 (221)
..-.+.+++|++++-+|++++.- +- + ...+++||.++||+|+.+.+.-.|.....++.++.
T Consensus 139 ~~f~NaDGD~Li~~q~G~l~l~T--e~---G---~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E~~~ 199 (424)
T PF04209_consen 139 RAFRNADGDELIFPQQGSLRLET--EF---G---RLDVRPGDYVVIPRGTRFRVELPGPARGYIIENFG 199 (424)
T ss_dssp EEEEESSEEEEEEEEES-EEEEE--TT---E---EEEE-TTEEEEE-TT--EEEE-SSSEEEEEEEEES
T ss_pred cceEcCCCCEEEEEEECCEEEEe--cC---e---eEEEcCCeEEEECCeeEEEEEeCCCceEEEEEcCC
Confidence 33346779999999999999874 32 2 36899999999999999998766333333444444
No 62
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.50 E-value=0.13 Score=48.30 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=43.4
Q ss_pred CCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 109 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 109 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
...-.+.+++|++++.+|++.+.-.-. ...+++||+++||+|+.+.+. ..++++..+
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~TEfG--------~L~v~pgei~VIPRG~~frv~-l~~gp~rgy 202 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLATELG--------VLDVEPGEIAVIPRGVKFRVE-LPDGPARGY 202 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEecc--------ceEecCCCEEEEcCccEEEEe-cCCCCeeEE
Confidence 344456679999999999999875432 378999999999999999885 334555544
No 63
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.49 E-value=0.054 Score=40.23 Aligned_cols=75 Identities=27% Similarity=0.339 Sum_probs=34.2
Q ss_pred EEEEcCCCcCCCccCCCCc--EEEEEE--eCEEEEEEEccCC---------------CCCeeEEEEeCCCcEEEEcCCCe
Q 027622 100 RIDYAPYGQNPPHTHPRAT--EILVVL--EGTLYVGFVTSNQ---------------LNNTLIAKVLNKGDVFVFPIGMI 160 (221)
Q Consensus 100 ~v~l~pgg~~ppH~Hp~a~--Ei~yVl--~G~~~~~~~~~~~---------------~~~~~~~~~L~~GDv~v~P~G~~ 160 (221)
....++|+..++|.|+++. =+.||- ++...+.+.+... .....+....++||+++||.-+.
T Consensus 4 ~ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~ 83 (101)
T PF13759_consen 4 ANIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLW 83 (101)
T ss_dssp EEEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSE
T ss_pred EEEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCE
Confidence 3457789999999999642 223332 2222223332210 01234567889999999999999
Q ss_pred EEEE-eCCCCcEEEE
Q 027622 161 HFQF-NIGKTNAVAI 174 (221)
Q Consensus 161 H~~~-N~g~~~a~~~ 174 (221)
|... |.++++=+.+
T Consensus 84 H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 84 HGVPPNNSDEERISI 98 (101)
T ss_dssp EEE----SSS-EEEE
T ss_pred EeccCcCCCCCEEEE
Confidence 9874 4444443333
No 64
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=95.47 E-value=0.01 Score=51.78 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=44.9
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 027622 96 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIA 175 (221)
Q Consensus 96 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~ 175 (221)
+.-..+.++.|....+|+|+ ..|-.|||+|++.++..... + ...|.+|-.|.-|.+..|... .++++++++.
T Consensus 171 ~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~---~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyI 242 (251)
T PF14499_consen 171 YTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGAS---N---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYI 242 (251)
T ss_dssp E-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE---T---TEEEEE-TT-EE--E-------EESS-EEEEE
T ss_pred eeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccC---C---CccccCCcccccCCccccccc-ccCCCEEEEE
Confidence 45566778888888999998 89999999999998653321 2 378999999999999999998 7788888886
Q ss_pred EEe
Q 027622 176 ALS 178 (221)
Q Consensus 176 ~~~ 178 (221)
-.+
T Consensus 243 Rtd 245 (251)
T PF14499_consen 243 RTD 245 (251)
T ss_dssp EES
T ss_pred EEC
Confidence 554
No 65
>PF12852 Cupin_6: Cupin
Probab=95.36 E-value=0.11 Score=42.60 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=35.9
Q ss_pred cEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCC
Q 027622 118 TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIG 167 (221)
Q Consensus 118 ~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g 167 (221)
.-+.+|++|+.++.+.+.. + ...|++||++++|+|..|.+....
T Consensus 36 ~~fh~V~~G~~~l~~~~~~----~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGG----E--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcCCC----C--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 6778899999999976521 1 589999999999999999985433
No 66
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.33 E-value=0.068 Score=46.62 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=36.4
Q ss_pred CcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCC
Q 027622 117 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 117 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~ 168 (221)
+-++.++++|++.+...+. .+.+++||++++|+|.+|......+
T Consensus 49 ~~~i~~~~~G~~~~~~~~~--------~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 49 GYILNLTIRGQGVIFNGGR--------AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred ceEEEEEEeccEEEecCCe--------eEecCCCCEEEECCCCceeeccCCC
Confidence 6789999999999875432 5899999999999999998755444
No 67
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.33 E-value=0.21 Score=44.84 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=44.9
Q ss_pred EEEEEEcCCC--cCCCccCCCCcEEEEEEeCEEEEEEEccCC---------------CCCeeEEEEeCCCcEEEEcCCCe
Q 027622 98 AVRIDYAPYG--QNPPHTHPRATEILVVLEGTLYVGFVTSNQ---------------LNNTLIAKVLNKGDVFVFPIGMI 160 (221)
Q Consensus 98 ~~~v~l~pgg--~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~---------------~~~~~~~~~L~~GDv~v~P~G~~ 160 (221)
.+.+-+.|++ ..+|||=. .+-+++=++|+=+..+..... ........+|++||++|+|+|..
T Consensus 115 ~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~ 193 (319)
T PF08007_consen 115 GANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWW 193 (319)
T ss_dssp EEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-E
T ss_pred ceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCcc
Confidence 3445567777 78999876 566667788988877765210 00235579999999999999999
Q ss_pred EEEEeCC
Q 027622 161 HFQFNIG 167 (221)
Q Consensus 161 H~~~N~g 167 (221)
|.....+
T Consensus 194 H~~~~~~ 200 (319)
T PF08007_consen 194 HQAVTTD 200 (319)
T ss_dssp EEEEESS
T ss_pred CCCCCCC
Confidence 9999988
No 68
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.27 E-value=0.18 Score=47.25 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=41.6
Q ss_pred ccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 112 HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 112 H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
-.+.+++|++++-+|++.+.-.- + ...+++||+++||+|+.+.+.- .++++..+
T Consensus 142 f~NaDGD~Livpq~G~l~i~TEf-----G---~L~v~pgei~VIPRG~~frv~l-~~gp~rgy 195 (435)
T PLN02658 142 FCNADGDFLIVPQQGRLWIKTEL-----G---KLQVSPGEIVVIPRGFRFAVDL-PDGPSRGY 195 (435)
T ss_pred eecCCCCEEEEEEeCCEEEEEec-----c---ceEecCCCEEEecCccEEEEec-CCCCeeEE
Confidence 45678999999999999987533 2 3789999999999999988853 33455543
No 69
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.20 E-value=0.082 Score=40.30 Aligned_cols=62 Identities=29% Similarity=0.292 Sum_probs=45.5
Q ss_pred CCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcC--CCeEEEEeCCC-CcEEEE
Q 027622 106 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI--GMIHFQFNIGK-TNAVAI 174 (221)
Q Consensus 106 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~--G~~H~~~N~g~-~~a~~~ 174 (221)
+...++|-|.+-+-+.||++|+++-. |+.+ + ..+|++||+-++-+ |+.|.-.|.++ +++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G--~---~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLG--N---RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTS--E---EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCC--C---eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 55679999986666778999998755 5542 4 37899999888876 58999999887 677665
No 70
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.19 E-value=0.19 Score=47.05 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=45.8
Q ss_pred CCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEe
Q 027622 109 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALS 178 (221)
Q Consensus 109 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~ 178 (221)
...-.+.+++|++++-+|++.+.-.-. ...+++||+++||+|+.+.+.-.+.....++..+.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TEfG--------~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTEFG--------RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEecc--------ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 344456679999999999999875432 37899999999999999988655433344444444
No 71
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=95.10 E-value=0.12 Score=43.65 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=43.3
Q ss_pred EEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCC------------------------CCeeEEEEeCCCcE
Q 027622 97 SAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL------------------------NNTLIAKVLNKGDV 152 (221)
Q Consensus 97 s~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~------------------------~~~~~~~~L~~GDv 152 (221)
.+....+.+|+....|.||++ +++|..++.+-+..+. ........-++|++
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~-----~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~l 171 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGS-----VISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRV 171 (201)
T ss_pred eEeEEEcCCCCccCceECCCc-----eEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeE
Confidence 456667899999999999975 3344444333211100 00111234489999
Q ss_pred EEEcCCCeEEEE-eCCCCcEE
Q 027622 153 FVFPIGMIHFQF-NIGKTNAV 172 (221)
Q Consensus 153 ~v~P~G~~H~~~-N~g~~~a~ 172 (221)
++||.-+.|... |.++++-+
T Consensus 172 vlFPS~L~H~v~p~~~~~~RI 192 (201)
T TIGR02466 172 LLFESWLRHEVPPNESEEERI 192 (201)
T ss_pred EEECCCCceecCCCCCCCCEE
Confidence 999999999864 44444433
No 72
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.88 E-value=0.1 Score=46.19 Aligned_cols=60 Identities=30% Similarity=0.384 Sum_probs=48.1
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCC--CeEEEEeC
Q 027622 100 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIG--MIHFQFNI 166 (221)
Q Consensus 100 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G--~~H~~~N~ 166 (221)
..++.||...+||-|..=+-+.||++|+++-. |+.+ |+ ..+++||+-.+-+| +.|.-.|.
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~G--n~---~~i~pGdvqwMTAG~GI~HSE~~~ 109 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLG--NK---GVIRPGDVQWMTAGSGIVHSEMNP 109 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCC--ce---eeecccceeEEcCCCceeecccCC
Confidence 34589999999999986566678999998866 4442 54 78999999998875 78998886
No 73
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=94.81 E-value=0.26 Score=42.23 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=46.5
Q ss_pred EEEE-EEEcCCCcCCCccCCCCcEEEEEEe-CEEEEEEEccCCC-------------CCeeE------EEEeCCCcEEEE
Q 027622 97 SAVR-IDYAPYGQNPPHTHPRATEILVVLE-GTLYVGFVTSNQL-------------NNTLI------AKVLNKGDVFVF 155 (221)
Q Consensus 97 s~~~-v~l~pgg~~ppH~Hp~a~Ei~yVl~-G~~~~~~~~~~~~-------------~~~~~------~~~L~~GDv~v~ 155 (221)
.+.. +-+.+|...|.|.|..-.|=++.-- |.+.+.+-...++ ++..+ ...|+||+.+-+
T Consensus 87 YAEKim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL 166 (225)
T PF07385_consen 87 YAEKIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITL 166 (225)
T ss_dssp EEEEEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE
T ss_pred chhhheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEee
Confidence 4434 5678899999999998888777665 5776666543210 11111 257999999999
Q ss_pred cCCCeEEEEeCCCCcEEEEEEEe
Q 027622 156 PIGMIHFQFNIGKTNAVAIAALS 178 (221)
Q Consensus 156 P~G~~H~~~N~g~~~a~~~~~~~ 178 (221)
++|+.|+++-.+.. +++.-++
T Consensus 167 ~Pg~yH~Fw~e~g~--vLigEVS 187 (225)
T PF07385_consen 167 PPGIYHWFWGEGGD--VLIGEVS 187 (225)
T ss_dssp -TTEEEEEEE-TTS--EEEEEEE
T ss_pred CCCCeeeEEecCCC--EEEEeee
Confidence 99999999876544 4444443
No 74
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=94.79 E-value=0.095 Score=44.17 Aligned_cols=90 Identities=21% Similarity=0.161 Sum_probs=69.3
Q ss_pred cCCCCeeEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcE
Q 027622 73 ANRLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDV 152 (221)
Q Consensus 73 ~~~~g~~v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv 152 (221)
.-..|+.+..+.... .-...++++.+.||...|-|+|- +.|.+.|++|... +++ -.+.+||.
T Consensus 110 W~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~s----de~--------G~y~vgD~ 171 (216)
T COG3806 110 WLGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAFS----DEN--------GEYLVGDF 171 (216)
T ss_pred eecCCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeeccc----cCC--------CccccCce
Confidence 345566555553322 22578999999999999999997 8999999999765 554 25789999
Q ss_pred EEEcCCCeEEEEeCCCCcEEEEEEEeCC
Q 027622 153 FVFPIGMIHFQFNIGKTNAVAIAALSSQ 180 (221)
Q Consensus 153 ~v~P~G~~H~~~N~g~~~a~~~~~~~s~ 180 (221)
..-+.++-|.-.-..+.++..++++.-+
T Consensus 172 ~~~d~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 172 TLADGTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred eecCCccccccccCCCCCceEEEEcCCC
Confidence 9999999998666777888888887543
No 75
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=94.68 E-value=0.061 Score=45.82 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=49.5
Q ss_pred EcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeC
Q 027622 103 YAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 166 (221)
Q Consensus 103 l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 166 (221)
-.|+...--|..+ +.|++|=.+|...+.++++ ++....++++||++..|+.++|+-+--
T Consensus 40 GGPN~RkdyHiee-geE~FyQ~KGdMvLKVie~----g~~rDivI~qGe~flLParVpHSPqRF 98 (279)
T KOG3995|consen 40 GGPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ----GKHRDVVIRQGEIFLLPARVPHSPQRF 98 (279)
T ss_pred cCCCcccccccCC-cchhheeecCceEEeeecc----CcceeeEEecCcEEEeccCCCCChhhh
Confidence 3555666778888 8999999999999999987 566689999999999999999975433
No 76
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=94.21 E-value=0.34 Score=42.91 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=57.0
Q ss_pred ceEEEEEEEcCCC---cCCCccCCCCcEEEE---EEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCC
Q 027622 95 GISAVRIDYAPYG---QNPPHTHPRATEILV---VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 95 gis~~~v~l~pgg---~~ppH~Hp~a~Ei~y---Vl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~ 168 (221)
.+-+....+.||+ .-|||.|+|..|..| +-++...+++..+. ++.....++-||+++.|+=.+|.- .|.
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~p---dETrh~~v~n~~aVisP~wsih~g--~gt 248 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEP---QETRHIVVHNEQAVISPSWSIHSG--VGT 248 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCc---cceeeEEEECCCEEECCCcceecC--cCc
Confidence 4666666778998 459999998777554 22333333433332 443458899999999999999976 466
Q ss_pred CcEEEEEEEeCCC
Q 027622 169 TNAVAIAALSSQF 181 (221)
Q Consensus 169 ~~a~~~~~~~s~~ 181 (221)
..-.+|++...+|
T Consensus 249 ~~y~fiw~m~gen 261 (276)
T PRK00924 249 SNYTFIWGMAGEN 261 (276)
T ss_pred cccEEEEEecccC
Confidence 6777788776655
No 77
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=94.21 E-value=0.098 Score=38.92 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=23.1
Q ss_pred CeeEEEEeCCCcEEEEcCCCeEEEEeCCCCc
Q 027622 140 NTLIAKVLNKGDVFVFPIGMIHFQFNIGKTN 170 (221)
Q Consensus 140 ~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~ 170 (221)
=+.+..+.++||.+++|+|..|+..|.|..-
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i 108 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDNI 108 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSEE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCceE
Confidence 3567889999999999999999999999743
No 78
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.93 E-value=0.43 Score=41.66 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=46.2
Q ss_pred ceEEEEEEEcCCCcC-----CCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCC
Q 027622 95 GISAVRIDYAPYGQN-----PPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKT 169 (221)
Q Consensus 95 gis~~~v~l~pgg~~-----ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~ 169 (221)
++.+.++...+.... ..|.+.+.-.++++++|+..+...+. ...+++||++++|.+.+|.+.-.++.
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g~--------~~~l~~G~~~l~~~~~p~~~~~~~~~ 115 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDDR--------QVQLAAGDITLIDASRPCSIYPQGLS 115 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECCe--------EEEEcCCCEEEEECCCCcEeecCCCc
Confidence 356666665554322 23444445567788999999886432 58899999999999999987654443
No 79
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.61 E-value=0.5 Score=39.98 Aligned_cols=89 Identities=19% Similarity=0.144 Sum_probs=62.2
Q ss_pred CCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCC---C----CCeeEEEE------e-CCCc-EEEE
Q 027622 91 LNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQ---L----NNTLIAKV------L-NKGD-VFVF 155 (221)
Q Consensus 91 ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~---~----~~~~~~~~------L-~~GD-v~v~ 155 (221)
.....+++..+-+++|..+|+|=||+-+-+.-|+.|++.+.-.+--. + +.+..... + .+++ .+..
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 44446888889999999999999997777777999999987654221 0 00111111 2 2223 5666
Q ss_pred cCC--CeEEEEeCCCCcEEEEEEEeCC
Q 027622 156 PIG--MIHFQFNIGKTNAVAIAALSSQ 180 (221)
Q Consensus 156 P~G--~~H~~~N~g~~~a~~~~~~~s~ 180 (221)
|.. -+|.+.+.+ +++.++-++..+
T Consensus 119 P~~ggNiH~f~a~~-~p~AflDIL~PP 144 (200)
T PF07847_consen 119 PTSGGNIHEFTALT-GPCAFLDILAPP 144 (200)
T ss_pred cCCCCeeEEEEeCC-CCeEEEEEccCC
Confidence 764 899999987 899999888643
No 80
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.37 E-value=0.44 Score=38.68 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=47.8
Q ss_pred cCCCCCCc-cce-EEEEEEEcCCCcCCCccCCCCcE----EEEEE-eCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCC
Q 027622 86 EQIPGLNT-LGI-SAVRIDYAPYGQNPPHTHPRATE----ILVVL-EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIG 158 (221)
Q Consensus 86 ~~~P~ln~-~gi-s~~~v~l~pgg~~ppH~Hp~a~E----i~yVl-~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G 158 (221)
+++|...+ ..+ .+....+.||+.+.||.-+.... +-+++ .+...+.+.+ + ++..++|++++|.-.
T Consensus 68 ~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~~------~--~~~w~~G~~~~fD~s 139 (163)
T PF05118_consen 68 EQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVGG------E--TRHWREGECWVFDDS 139 (163)
T ss_dssp CCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEETT------E--EEB--CTEEEEE-TT
T ss_pred HhCcccccccchhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEECC------e--EEEeccCcEEEEeCC
Confidence 44544433 222 34445689999999998764322 22233 2344544432 2 578899999999999
Q ss_pred CeEEEEeCCCCcEEEEE
Q 027622 159 MIHFQFNIGKTNAVAIA 175 (221)
Q Consensus 159 ~~H~~~N~g~~~a~~~~ 175 (221)
..|...|.|+++-+.+.
T Consensus 140 ~~H~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 140 FEHEVWNNGDEDRVVLI 156 (163)
T ss_dssp S-EEEEESSSS-EEEEE
T ss_pred EEEEEEeCCCCCEEEEE
Confidence 99999999988766553
No 81
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=93.33 E-value=0.51 Score=39.67 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=47.8
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEE-eCEEEEEEEccC--CC-----------CCeeE------EEEeCCCcEEEEcCC
Q 027622 99 VRIDYAPYGQNPPHTHPRATEILVVL-EGTLYVGFVTSN--QL-----------NNTLI------AKVLNKGDVFVFPIG 158 (221)
Q Consensus 99 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl-~G~~~~~~~~~~--~~-----------~~~~~------~~~L~~GDv~v~P~G 158 (221)
-.+...+|...|+|.|++-.|=++=- .|++.+...... ++ +++.. ...|+||+.+-+|+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg 168 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG 168 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence 34567899999999999665543322 233333332211 00 01111 257999999999999
Q ss_pred CeEEEEeCCCCcEEEEEEEeC
Q 027622 159 MIHFQFNIGKTNAVAIAALSS 179 (221)
Q Consensus 159 ~~H~~~N~g~~~a~~~~~~~s 179 (221)
+-|+++.-+.. +++.-.++
T Consensus 169 ~~HsFwae~g~--vlvgEvSs 187 (225)
T COG3822 169 LYHSFWAEEGG--VLVGEVSS 187 (225)
T ss_pred ceeeeeecCCc--EEEEEEee
Confidence 99999875443 44444443
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.32 E-value=0.47 Score=41.74 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=47.5
Q ss_pred cCCCcCCCccC-CCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCC-cEEEEcCCCeEEEEeCC
Q 027622 104 APYGQNPPHTH-PRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG-DVFVFPIGMIHFQFNIG 167 (221)
Q Consensus 104 ~pgg~~ppH~H-p~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~G-Dv~v~P~G~~H~~~N~g 167 (221)
-|++...+|.| +...|.+.|++|++.+.+.++.+ .......+.+. +.-++|++.-|.....+
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g--~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG--EELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC--CeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 46778899999 56679999999999998887653 44445566664 56579999999987664
No 83
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.22 E-value=1.2 Score=40.85 Aligned_cols=71 Identities=13% Similarity=0.065 Sum_probs=49.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
|+.+..-.+..+-....-...+++|++++-+|++++.-.-. ..++++||..+||+|+....+-.+.+ +..+
T Consensus 124 g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~G--------~l~v~pgeiavIPRG~~frve~~~~~-~rgy 194 (427)
T COG3508 124 GVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTELG--------VLEVEPGEIAVIPRGTTFRVELKDGE-ARGY 194 (427)
T ss_pred ceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEeec--------eEEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence 44443333333333345567778999999999999875432 48899999999999999888765544 4444
No 84
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=0.067 Score=50.57 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=45.3
Q ss_pred cCCC-cCCCccCCCCcEEEEEEeCEEEEEEEccCC-----------------CCCeeEEEEeCCCcEEEEcCCCeEEEEe
Q 027622 104 APYG-QNPPHTHPRATEILVVLEGTLYVGFVTSNQ-----------------LNNTLIAKVLNKGDVFVFPIGMIHFQFN 165 (221)
Q Consensus 104 ~pgg-~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~-----------------~~~~~~~~~L~~GDv~v~P~G~~H~~~N 165 (221)
+||. ..+|||-. -+-+++=++|+=++.+-.+.. -+..++...|++||++|||+|.+|....
T Consensus 325 PagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 4554 57999985 455666789987777654320 0345667899999999999999998754
Q ss_pred CC
Q 027622 166 IG 167 (221)
Q Consensus 166 ~g 167 (221)
..
T Consensus 404 ~~ 405 (629)
T KOG3706|consen 404 PA 405 (629)
T ss_pred cc
Confidence 43
No 85
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=92.77 E-value=0.85 Score=39.22 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=56.0
Q ss_pred cceEEEEEEEcCCCcCCC-ccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEE
Q 027622 94 LGISAVRIDYAPYGQNPP-HTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAV 172 (221)
Q Consensus 94 ~gis~~~v~l~pgg~~pp-H~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~ 172 (221)
..+-+..+.++||+.+|- -+|- -+-=+||++|+........ ...+++||.+..-+-.+.+....|.....
T Consensus 180 ~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn~d--------wv~V~aGD~mwm~A~cpQacyagG~g~fr 250 (264)
T COG3257 180 FDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLNNN--------WVPVEAGDYIWMGAYCPQACYAGGRGAFR 250 (264)
T ss_pred cceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeecCc--------eEEeecccEEEeeccChhhhccCCCCceE
Confidence 468899999999998865 3453 3344899999999988533 58999999999999998888877776444
Q ss_pred EE
Q 027622 173 AI 174 (221)
Q Consensus 173 ~~ 174 (221)
.+
T Consensus 251 YL 252 (264)
T COG3257 251 YL 252 (264)
T ss_pred EE
Confidence 33
No 86
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=91.99 E-value=2.2 Score=31.81 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=41.8
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 027622 102 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAA 176 (221)
Q Consensus 102 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~ 176 (221)
.+.||. .+....+.|+.-|++|++++.+-++. . .+++++|+.|.+|++.--.++.. ++...+|.
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~----e--w~~~~aGesF~VpanssF~v~v~--~~~~Y~C~ 92 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLPGED----E--WQTYSAGESFEVPANSSFDVKVK--EPTAYLCS 92 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEETT-S----S---EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCc----c--cEEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence 456665 33334478999999999999997653 2 68999999999999988777654 34444443
No 87
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.28 E-value=1.4 Score=40.98 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=41.0
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEE
Q 027622 96 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 164 (221)
Q Consensus 96 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~ 164 (221)
..+.++++..+. .++...+.++++|++|++++... . . +..|++|+++++|++......
T Consensus 321 F~~~~~~l~~~~---~~~~~~~~~Illv~~G~~~i~~~-~----~---~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 321 FAFSLHDLSDQP---TTLSQQSAAILFCVEGEAVLWKG-E----Q---QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred cEEEEEEECCce---EEecCCCcEEEEEEcceEEEEeC-C----e---EEEECCCCEEEEeCCCccEEE
Confidence 566677765542 22222467999999999998642 1 2 478999999999998776554
No 88
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=90.23 E-value=3.6 Score=32.07 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=43.1
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCc
Q 027622 96 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTN 170 (221)
Q Consensus 96 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~ 170 (221)
+.+.++.....-.+...-+.+.--+.+.++|+..+...+. ...+.+||+++++.+.++.+...++..
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~g~--------~~~~~pg~~~l~d~~~~~~~~~~~~~~ 100 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQGGR--------EVELAPGDVVLLDPGQPYRLEFSAGCR 100 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEECCE--------EEEEcCCeEEEEcCCCCEEEEECCCcc
Confidence 5566666553332211112224456667788888876432 589999999999999999887654433
No 89
>PRK10579 hypothetical protein; Provisional
Probab=90.21 E-value=2.8 Score=31.29 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=42.0
Q ss_pred EcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeC
Q 027622 103 YAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNI 166 (221)
Q Consensus 103 l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 166 (221)
+.||. .+.--.+.|+.-|++|++++.+-+++ . .+++++|+.|.+|++..-.++..
T Consensus 30 m~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~----e--w~~~~aG~sF~VpanssF~l~v~ 84 (94)
T PRK10579 30 MAEGE---YTFSTAEPEEMTVISGALNVLLPGAT----D--WQVYEAGEVFNVPGHSEFHLQVA 84 (94)
T ss_pred EeeeE---EEEcCCCcEEEEEEeeEEEEECCCCc----c--cEEeCCCCEEEECCCCeEEEEEC
Confidence 44554 23333478999999999999987653 2 68999999999999998766543
No 90
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.21 E-value=1.5 Score=40.26 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=51.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
...+.+++++.|...-.-.-+ +.-++.|++|++++.-... . ...+++||+++||+...-.+ +..+++...+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t~----~---~~~v~rG~V~fI~a~~~i~~-~~~sd~~~~y 402 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDTD----S---KILVNRGDVLFIPANHPIHL-SSSSDPFLGY 402 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCCC----C---ceeeccCcEEEEcCCCCcee-eccCcceeee
Confidence 467777888886643222333 6789999999999986532 2 47899999999999977644 3344455555
Q ss_pred EEEe
Q 027622 175 AALS 178 (221)
Q Consensus 175 ~~~~ 178 (221)
-++.
T Consensus 403 rAf~ 406 (411)
T KOG2757|consen 403 RAFS 406 (411)
T ss_pred eccc
Confidence 4443
No 91
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=90.13 E-value=2.2 Score=38.01 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=42.2
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEE
Q 027622 94 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 164 (221)
Q Consensus 94 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~ 164 (221)
.-+++.++++..... ...+ ....+++|++|++++... +. +..|++|+.+++|++......
T Consensus 233 ~~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~~------~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 233 EYFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKSG------GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEEC------CE--EEEEecccEEEEccCCccEEE
Confidence 356777877764321 1123 367899999999998642 21 578999999999999866543
No 92
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=89.71 E-value=4.1 Score=29.56 Aligned_cols=61 Identities=16% Similarity=0.003 Sum_probs=42.1
Q ss_pred CcCCCccCCCC-cEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCC
Q 027622 107 GQNPPHTHPRA-TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 107 g~~ppH~Hp~a-~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~ 168 (221)
++...|.-..+ -.-+.|++|++.+...++.++ -......+.+|+.-++++...|.+.-.++
T Consensus 14 ~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~-~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 14 ALLERHNTKAGTWGKLRVLEGELKFYGLDEEGE-EPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGSSBCCSTTEEEEEEEEESEEEEEEESSTT--SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCC-ceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 44455643322 356779999999998876421 11235789999999999999999988765
No 93
>PLN02288 mannose-6-phosphate isomerase
Probab=89.48 E-value=1.2 Score=41.59 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=40.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCC
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGM 159 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~ 159 (221)
.+++.++++.+|.......+ ++.++++|++|++++..... . .+..|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~~~~----~--~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLSTGSS----E--DGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEecCCc----c--ceEEEeceeEEEEeCCC
Confidence 46788888877753222213 36799999999999863221 1 13569999999999864
No 94
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=89.47 E-value=2.4 Score=31.67 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=42.6
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 027622 99 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAA 176 (221)
Q Consensus 99 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~ 176 (221)
..+.++||+......-+...-++||++|++.+. +. + ..+.+|+++++..|..=.+.+.+ +.+.++..
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~--~~-----~---~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll 68 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG--GE-----E---DPLEAGQLVVLEDGDEIELTAGE-EGARFLLL 68 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET--TT-----T---EEEETTEEEEE-SECEEEEEESS-SSEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC--CC-----c---ceECCCcEEEECCCceEEEEECC-CCcEEEEE
Confidence 457888888653333333467899999998753 22 1 57999999999977665666654 66766643
No 95
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=89.17 E-value=4.1 Score=34.34 Aligned_cols=64 Identities=23% Similarity=0.247 Sum_probs=46.1
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIH 161 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H 161 (221)
+.......+++|...-..-.+ ...+.+|++|.+.+...++++ ++.....+.+||++-+..+..+
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G--~e~i~~~~~~Gd~fG~~~~~~~ 98 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDG--RRQIGAFHLPGDVFGLESGSTH 98 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCC--cEEEEEEecCCceecccCCCcC
Confidence 456677788999866444343 678899999999998877653 4555667899998876555443
No 96
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=88.87 E-value=2.9 Score=28.66 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=41.3
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEe
Q 027622 101 IDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 165 (221)
Q Consensus 101 v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N 165 (221)
..+.||....++-. +...+.|.+|++-++..... ..+.|++||.+.+++|..-+++.
T Consensus 2 ~~L~~g~~~~lr~~--~~~~l~v~~G~vWlT~~g~~------~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAA--AGQRLRVESGRVWLTREGDP------DDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcC--CCcEEEEccccEEEECCCCC------CCEEECCCCEEEeCCCCEEEEEe
Confidence 34667776666644 34449999999998875432 25899999999999998766543
No 97
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=88.69 E-value=4.7 Score=32.96 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=38.7
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEE
Q 027622 99 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 155 (221)
Q Consensus 99 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~ 155 (221)
....+++|...-..-.+ ...+.+|++|.+++...+.++ ++.....+.+||++-.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEG--KEMILSYLNQGDFIGE 74 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCC--CEEEEEEcCCCCEEee
Confidence 45678888765433333 678999999999998766542 5555678999999743
No 98
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=87.92 E-value=3.1 Score=34.22 Aligned_cols=69 Identities=25% Similarity=0.281 Sum_probs=42.6
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEc--cC----CCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCC
Q 027622 96 ISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVT--SN----QLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKT 169 (221)
Q Consensus 96 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~--~~----~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~ 169 (221)
+++..+.+.||...|+|-|- -.-++=|+.|.-+-.+-. .. +++. .+.+.+|++-. -+|.+|...|.+..
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~q---dk~~apgeV~l-Spgdihsv~n~~sd 147 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQ---DKFAAPGEVHL-SPGDIHSVANTGSD 147 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchh---hhhcCcceEee-CCCCeeeecccCCC
Confidence 57899999999999999995 677777888864433221 11 1111 23455565553 33666666555543
No 99
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=86.91 E-value=2.1 Score=29.42 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=32.6
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEE
Q 027622 102 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 153 (221)
Q Consensus 102 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~ 153 (221)
.+++|...-..-. ....+.+|++|.+.+...+.++ .+.....+.+||++
T Consensus 3 ~~~~g~~i~~~g~-~~~~~~~i~~G~v~~~~~~~~~--~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGD-PCDHIYIILSGEVKVSSINEDG--KEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTS-BESEEEEEEESEEEEEEETTTS--EEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCC-cCCEEEEEEECceEEEeceecc--eeeeecceeeeccc
Confidence 4555553322212 2689999999999999887752 33345778888776
No 100
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=86.13 E-value=12 Score=32.77 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=50.4
Q ss_pred eeEEEecccCCCCCCccceEEEEEEEcCCC---cCCCccCCCC--------cEEEEEE----eCEEEEEEEccCCCCCee
Q 027622 78 FSVTNANVEQIPGLNTLGISAVRIDYAPYG---QNPPHTHPRA--------TEILVVL----EGTLYVGFVTSNQLNNTL 142 (221)
Q Consensus 78 ~~v~~~~~~~~P~ln~~gis~~~v~l~pgg---~~ppH~Hp~a--------~Ei~yVl----~G~~~~~~~~~~~~~~~~ 142 (221)
-.|......+.+... .+-+..+. .|+| .-|||.|++. +|+.|-. +|-+.-.+-...+ ..-
T Consensus 135 R~V~~~i~~~~~~~~--~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~--~~d 209 (261)
T PF04962_consen 135 RTVRNIIDPNVPPAS--RLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDP--QLD 209 (261)
T ss_dssp EEEEEEESTTT---S--S-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTS--SSE
T ss_pred EEEEEeeCCCCcccc--eEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCC--CCc
Confidence 445555555555222 35555555 5554 4599999963 4555542 2433322222221 222
Q ss_pred EEEEeCCCcEEEEcCCCeEEEEe-CCCCcEEEEEEEeCCC
Q 027622 143 IAKVLNKGDVFVFPIGMIHFQFN-IGKTNAVAIAALSSQF 181 (221)
Q Consensus 143 ~~~~L~~GDv~v~P~G~~H~~~N-~g~~~a~~~~~~~s~~ 181 (221)
....++-||++.+|+| .|.+.. .|. ...++.++...+
T Consensus 210 ~~~~V~~~d~V~iP~g-yHp~~aapGy-~~Yylw~maG~~ 247 (261)
T PF04962_consen 210 EHYVVRNGDAVLIPSG-YHPVVAAPGY-DMYYLWVMAGEN 247 (261)
T ss_dssp EEEEEETTEEEEESTT-B-SEEEEEES-SEEEEEEEESSS
T ss_pred EEEEEECCCEEEeCCC-CCCcCcCCCc-CcEEEEEEEcCC
Confidence 3688999999999999 233322 333 444777777666
No 101
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=85.53 E-value=2.1 Score=39.40 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=44.0
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCC--------------CCeeEEEEeCCCcEEEEcCCCeEEEEeC
Q 027622 102 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQL--------------NNTLIAKVLNKGDVFVFPIGMIHFQFNI 166 (221)
Q Consensus 102 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~--------------~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 166 (221)
-..+||.+.+||-+ -+-+++=..|+=+..+.....- .......++.|||+.|+|+|..|+-...
T Consensus 125 ~a~~GGgvg~H~D~-YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQ-YDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccc-hheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 35789999999997 4555555566667766533100 0111235799999999999999987655
No 102
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=82.78 E-value=5.6 Score=32.27 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=36.8
Q ss_pred EEEEcCCCcCCCccCC-CCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEE
Q 027622 100 RIDYAPYGQNPPHTHP-RATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 155 (221)
Q Consensus 100 ~v~l~pgg~~ppH~Hp-~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~ 155 (221)
...+++|...-.---+ ....+.+|++|.+++...+.+| .+.....+.+||++=.
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G--~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEG--NALTLRYVRPGEYFGE 62 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCC--CEEEEEEecCCCeech
Confidence 3456666644222221 2478999999999999887653 5566677899998754
No 103
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=82.64 E-value=9.8 Score=34.40 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=41.2
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 163 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~ 163 (221)
.+++.+.++..-... .+ .++..+++|++|++++...++ +..|++|+.+++|+...-+.
T Consensus 241 ~F~l~~~~i~~~~~~-~~--~~~~~il~v~eG~~~l~~~~~--------~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 241 DFALYKWDISGTAEF-IK--QESFSILLVLEGEGTLIGGGQ--------TLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred ceEEEEEeccChhhh-cc--CCCcEEEEEEcCeEEEecCCE--------EEEEcCCcEEEEEcCCCcEE
Confidence 466777666651111 11 237899999999999886422 68999999999999965544
No 104
>PHA02984 hypothetical protein; Provisional
Probab=82.17 E-value=9.8 Score=33.65 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=39.6
Q ss_pred cEEEE--EEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 118 TEILV--VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 118 ~Ei~y--Vl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
.|.+| +++|+.++..... ++..+..+++||.|.+.-+.-|..... ++...++
T Consensus 92 nEy~FvlCl~G~~~I~~~~~----~~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L~ 145 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFNK----GSKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHLA 145 (286)
T ss_pred ccEEEEEEcCCeEEEEEecC----CceeeeEEecCceEEEEccceEEEEeC-CCceEEE
Confidence 45544 6789999988765 566799999999999999999998543 4444433
No 105
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=81.88 E-value=8 Score=27.22 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=37.3
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEc
Q 027622 100 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFP 156 (221)
Q Consensus 100 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P 156 (221)
...+.+|...- +-......+.+|++|.+.+...+.++ +......+.+||.+-..
T Consensus 19 ~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 19 PVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDG--REQILGILGPGDFFGEL 72 (120)
T ss_pred EEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCC--ceEEEEeecCCceechh
Confidence 45677777552 23333678999999999988765442 55567788899976544
No 106
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=80.47 E-value=7.8 Score=27.20 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=36.2
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEE
Q 027622 99 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 155 (221)
Q Consensus 99 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~ 155 (221)
....+.+|...-..--+ ...+.++++|.+.+...++++ .+.....+.+|+++-.
T Consensus 18 ~~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~g--~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDEDG--REQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCCC--cEEEEEecCCccCcCh
Confidence 34567777755222222 578999999999998876642 4455677889987643
No 107
>PHA02890 hypothetical protein; Provisional
Probab=79.09 E-value=18 Score=31.83 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=36.7
Q ss_pred cEEEE--EEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEe
Q 027622 118 TEILV--VLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN 165 (221)
Q Consensus 118 ~Ei~y--Vl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N 165 (221)
.|.+| +++|+.++.+... ++..+..+++||.|.+.-+.-|....
T Consensus 91 nEy~FVlCL~Gs~~In~~~~----d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 91 IECFFVACIEGSCKINVNIG----DREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred ccEEEEEEeCCeEEEEEecC----CceeeeeeecCceEEEEccceEEEEc
Confidence 46555 6789999988655 66779999999999999999999865
No 108
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.24 E-value=8.5 Score=28.23 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=34.2
Q ss_pred CcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEE
Q 027622 117 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 163 (221)
Q Consensus 117 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~ 163 (221)
+.|+..|+.|.+++...++. . .++..+|+.|.+|.+.-..+
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs~----d--Wq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 41 APEEMTVVSGALTVLLPGSD----D--WQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred CceEEEEEeeEEEEEcCCCc----c--cEEecCCceEEcCCCCeEEE
Confidence 67999999999999987653 2 68999999999999876544
No 109
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=77.08 E-value=8.9 Score=32.12 Aligned_cols=53 Identities=4% Similarity=-0.053 Sum_probs=37.2
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEE
Q 027622 100 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 155 (221)
Q Consensus 100 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~ 155 (221)
...+++|...-.. ......+.+|++|.+++...+.+| .+.....+.+||++-.
T Consensus 33 ~~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G--~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 33 LFHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANG--KVSLIDFFAAPCFIGE 85 (226)
T ss_pred heeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC--CEeeeeecCCCCeEEe
Confidence 3456777655322 223578999999999999887763 4555677899998764
No 110
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=75.34 E-value=39 Score=26.79 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=52.2
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeC-EEEEEEEccCCCCCeeEEEEe----CCCc--EEEEcCCCeEEEEeCCC
Q 027622 96 ISAVRIDYAPYGQNPPHTHPRATEILVVLEG-TLYVGFVTSNQLNNTLIAKVL----NKGD--VFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 96 is~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G-~~~~~~~~~~~~~~~~~~~~L----~~GD--v~v~P~G~~H~~~N~g~ 168 (221)
.+....-+.++....+|.= +++|+.+...| .+++.+.+++ ++..+.+| .+|+ .++||+|.....+..+.
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~d---g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~ 116 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPD---GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPE 116 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTT---STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECES
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCC---CCeEEEEECCCCCCCceEEEEECCCEEEEccccCC
Confidence 4555566788777766654 58999999988 6888888876 45445566 4454 78999999988865555
Q ss_pred CcEEEEEE
Q 027622 169 TNAVAIAA 176 (221)
Q Consensus 169 ~~a~~~~~ 176 (221)
..-.+++.
T Consensus 117 ~~y~Lvsc 124 (139)
T PF06172_consen 117 GDYSLVSC 124 (139)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 55555443
No 111
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=74.12 E-value=25 Score=31.29 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=36.6
Q ss_pred CCcEE-EEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEe--CCCCcEEEEE
Q 027622 116 RATEI-LVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN--IGKTNAVAIA 175 (221)
Q Consensus 116 ~a~Ei-~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N--~g~~~a~~~~ 175 (221)
...|+ ++.+.|++++.+.++ ++.|.+.|.+++|+|..-.... ....++.+..
T Consensus 72 ~rrE~giV~lgG~~~V~vdG~--------~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i 126 (276)
T PRK00924 72 ERRELGIINIGGAGTVTVDGE--------TYELGHRDALYVGKGAKEVVFASADAANPAKFYL 126 (276)
T ss_pred CCcEEEEEEccceEEEEECCE--------EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEE
Confidence 35665 557799999997533 4679999999999998765553 2245666653
No 112
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=73.72 E-value=21 Score=31.34 Aligned_cols=82 Identities=17% Similarity=0.015 Sum_probs=48.9
Q ss_pred EEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCC--------c
Q 027622 80 VTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKG--------D 151 (221)
Q Consensus 80 v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~G--------D 151 (221)
++.++.... +.. -+.+..+.|++|.....-.. +.+-.++.|+|++++.+.+. + .+.|..- |
T Consensus 14 ~~~i~~~~~-g~~--~~~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~~g~-----~--~~~l~~R~~vF~~~~d 82 (261)
T PF04962_consen 14 VYSITPENA-GWM--YMGFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTVDGE-----E--FYELGGRESVFDGPPD 82 (261)
T ss_dssp EEECTCCCC-CCC--CBECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEETTE-----E--EEEE-TTSSGGGS--E
T ss_pred EEEECCCcc-Ccc--ccceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEeCCc-----e--EEEecccccccCCCCc
Confidence 444444443 333 24556678888886655533 23444557899999998531 1 4566666 9
Q ss_pred EEEEcCCCeEEEEeCCCCcEEEE
Q 027622 152 VFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 152 v~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
++++|+|..-.+...++ +.+.
T Consensus 83 ~lYvp~g~~~~i~a~~~--ae~~ 103 (261)
T PF04962_consen 83 ALYVPRGTKVVIFASTD--AEFA 103 (261)
T ss_dssp EEEE-TT--EEEEESST--EEEE
T ss_pred EEEeCCCCeEEEEEcCC--CEEE
Confidence 99999999988877544 4443
No 113
>PLN02868 acyl-CoA thioesterase family protein
Probab=72.44 E-value=14 Score=34.19 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=37.9
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEE
Q 027622 99 VRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 155 (221)
Q Consensus 99 ~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~ 155 (221)
....+++|..+-.--.+ ...+++|++|++++...+.+ ++.....+++||+|-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~---ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEE---ESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCC---CcEEEEEeCCCCEeeh
Confidence 34567777765333333 67899999999999887664 3445677899998874
No 114
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=71.44 E-value=15 Score=32.64 Aligned_cols=46 Identities=2% Similarity=-0.048 Sum_probs=37.4
Q ss_pred cEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCc
Q 027622 118 TEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTN 170 (221)
Q Consensus 118 ~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~ 170 (221)
.-++++.+|.+.+.-.+.. +..+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~g~-------~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSSGE-------YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCCCc-------eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 4688999999998754321 478999999999999999998887544
No 115
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=70.73 E-value=2.3 Score=37.87 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=17.7
Q ss_pred EEEeCCCcEEEEcCCCeEE
Q 027622 144 AKVLNKGDVFVFPIGMIHF 162 (221)
Q Consensus 144 ~~~L~~GDv~v~P~G~~H~ 162 (221)
...+++||++++|+|.+|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 5789999999999999997
No 116
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=70.19 E-value=34 Score=27.99 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=47.2
Q ss_pred CCccCCCCcEEEEEEeCEEEEEEEccCCC--CCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 110 PPHTHPRATEILVVLEGTLYVGFVTSNQL--NNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 110 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~--~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
.+=.||.++|.++-+.|+-.+-++...++ -.++..+..++|+.+.+-+|+.|...-.=+++..++
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~ 138 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFL 138 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEE
Confidence 34458889999999999988888765321 145778999999999999999996532223334443
No 117
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=69.49 E-value=11 Score=32.41 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=58.0
Q ss_pred CCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEeCCCCc--
Q 027622 106 YGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPG-- 183 (221)
Q Consensus 106 gg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~s~~pg-- 183 (221)
.|....|| ++-..+|++|+......+ +....+.++||..+.|+|.....+-. +.+.++.=-..--|-
T Consensus 111 eGhsGrh~---ad~y~tIL~G~~~~~~~g------~~~~evy~pGd~~~l~rg~a~~y~m~--~~tw~LEY~RG~IP~~l 179 (216)
T PF04622_consen 111 EGHSGRHW---ADDYFTILSGEQWAWSPG------SLEPEVYKPGDSHHLPRGEAKQYQMP--PGTWALEYGRGWIPSML 179 (216)
T ss_pred CCCCcceE---eeeEEEEEEEEEEEEcCC------CCCceEeccCCEEEecCceEEEEEeC--CCeEEEEecCCchhhhh
Confidence 34455554 678899999999876533 33368899999999999998866443 223333211112232
Q ss_pred eeeechhhhcCCCCCCHHHHHHhcCCCHHH
Q 027622 184 VITIANTVFGANPPINPDFLAKAFQLDVNV 213 (221)
Q Consensus 184 ~~~~~~~lf~~~p~ip~~vl~~af~~~~~~ 213 (221)
-+.+++++|.+ ++-..+-++..+..++
T Consensus 180 pf~~~dt~~sT---lDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 180 PFGFADTLFST---LDFPTLYRTVYITARE 206 (216)
T ss_pred HHHHHHHHHhc---cchHHHHHHHHHHHHH
Confidence 12234566664 6666677776666544
No 118
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=68.90 E-value=31 Score=28.06 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=39.5
Q ss_pred CccCCCCcEEEEEEeCEE-EEEEEccCCC---CCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 027622 111 PHTHPRATEILVVLEGTL-YVGFVTSNQL---NNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAAL 177 (221)
Q Consensus 111 pH~Hp~a~Ei~yVl~G~~-~~~~~~~~~~---~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~ 177 (221)
+=.|+..+|.++-+.|+. ++-++....+ -+++..+.+.+|+.+.+-+|+.|...-.=++++.++.+-
T Consensus 74 lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~ 144 (165)
T PF04115_consen 74 LERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVD 144 (165)
T ss_dssp EEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEE
T ss_pred eccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEe
Confidence 345777999999999998 5555543311 156778999999999999999997533333566665553
No 119
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=68.54 E-value=4.4 Score=36.61 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.4
Q ss_pred eEEEEeCCCcEEEEcCCCeEEE
Q 027622 142 LIAKVLNKGDVFVFPIGMIHFQ 163 (221)
Q Consensus 142 ~~~~~L~~GDv~v~P~G~~H~~ 163 (221)
+....|+|||.+++|+|.+|..
T Consensus 157 Ln~v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 157 LNRVKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred hcEEecCCCCEEEecCCCceee
Confidence 3357899999999999999977
No 120
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=67.17 E-value=50 Score=27.39 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=35.1
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEE
Q 027622 101 IDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 155 (221)
Q Consensus 101 v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~ 155 (221)
..+++|...-.--- ....+.+|++|.+++...++++ ++.....+.+||++-.
T Consensus 40 ~~~~kge~l~~~Gd-~~~~ly~v~~G~v~~~~~~~~G--~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKAGD-ELKSLYAIRSGTIKSYTITEQG--DEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECCCC-CcceEEEEeeceEEEEEECCCC--CEEEEEeccCCceecc
Confidence 35666664432222 2567899999999999887653 5555566789998854
No 121
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=66.57 E-value=33 Score=29.97 Aligned_cols=84 Identities=20% Similarity=0.200 Sum_probs=55.6
Q ss_pred cceEEEEEEEcCCCc---CCCccCCCCcEEEEEE---eCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCC
Q 027622 94 LGISAVRIDYAPYGQ---NPPHTHPRATEILVVL---EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIG 167 (221)
Q Consensus 94 ~gis~~~v~l~pgg~---~ppH~Hp~a~Ei~yVl---~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g 167 (221)
-.+++....++||.+ .|.|.|.|..|..+.. +-.-.+.+-++. ++....+++--+.++-|+=.+|.- .|
T Consensus 175 cQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP---~ETRHiv~~NEqAViSP~WSIHSG--~G 249 (278)
T COG3717 175 CQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP---QETRHIVMHNEQAVISPPWSIHSG--VG 249 (278)
T ss_pred hhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC---CceeEEEEeccceeeCCCceeecC--cc
Confidence 356777778999984 5999999999976533 222333333332 333456677777888888888875 46
Q ss_pred CCcEEEEEEEeCCCC
Q 027622 168 KTNAVAIAALSSQFP 182 (221)
Q Consensus 168 ~~~a~~~~~~~s~~p 182 (221)
...-.++++...+|-
T Consensus 250 T~~YtFIWaMaGeN~ 264 (278)
T COG3717 250 TANYTFIWAMAGENQ 264 (278)
T ss_pred ccceEEEEEeccccc
Confidence 666777777765553
No 122
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=65.51 E-value=6.7 Score=36.45 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.6
Q ss_pred eEEEEeCCCcEEEEcCCCeEEE
Q 027622 142 LIAKVLNKGDVFVFPIGMIHFQ 163 (221)
Q Consensus 142 ~~~~~L~~GDv~v~P~G~~H~~ 163 (221)
+-...|++||.+++|+|.+|..
T Consensus 236 LN~v~l~pGeaifipAg~~HAy 257 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAY 257 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEE
Confidence 4467899999999999999976
No 123
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=64.49 E-value=28 Score=27.69 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=39.1
Q ss_pred EEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcC
Q 027622 98 AVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI 157 (221)
Q Consensus 98 ~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~ 157 (221)
.....+++|...-..--+ +.-+.+|++|.+.+.....++ .+.....+.+||.|-...
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G--~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDG--REIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCC--cEEEEEEecCCchhhhHH
Confidence 344556666544433333 455889999999999987763 455566799999886664
No 124
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=63.29 E-value=12 Score=34.02 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=33.9
Q ss_pred CeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEeCCCCcee
Q 027622 140 NTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSSQFPGVI 185 (221)
Q Consensus 140 ~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~s~~pg~~ 185 (221)
.+-+.-..++|+.+++|.|.-|.+.|....-|+.--..+..|.+.+
T Consensus 260 ~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 260 YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 5566788999999999999999999987665544333344565554
No 125
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=61.99 E-value=88 Score=28.42 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=47.1
Q ss_pred CCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEEeC
Q 027622 109 NPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAALSS 179 (221)
Q Consensus 109 ~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~~s 179 (221)
+..-+..+++=++.-.+|.+.++- +- +| ..+.++++-+||+|+-..+.-.|.....++.++..
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~T--Ef---Gr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITT--EF---GR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEe--ec---cc---eeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 455566667777777788877663 22 33 67899999999999999887777777777777753
No 126
>PHA00672 hypothetical protein
Probab=60.12 E-value=60 Score=25.72 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=55.1
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEE
Q 027622 94 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVA 173 (221)
Q Consensus 94 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~ 173 (221)
.|+.+..+.++.|....=-.|. -|-+++.+|.+++..+++ .+.|+.-.++.-|+|.....+.-.|.....
T Consensus 45 ~GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~tdge--------~~rl~g~~~i~~~aG~KragyAHeDT~wt~ 114 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIGGE--------AVELRGYHVIPASAGRKQAFVAHADTDLTM 114 (152)
T ss_pred cceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeCCc--------EEEEecceeeecCCCcccceeeeccceEEE
Confidence 3899999999999988777774 455599999999987533 477888889999999888777666655544
Q ss_pred E
Q 027622 174 I 174 (221)
Q Consensus 174 ~ 174 (221)
+
T Consensus 115 ~ 115 (152)
T PHA00672 115 L 115 (152)
T ss_pred E
Confidence 3
No 127
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=60.10 E-value=10 Score=35.10 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=49.0
Q ss_pred EEEEEEE-c-CCCcCCCc---cCCCCcEEEEEEeCEEEEEEEccCCC----------------------CCeeEEEEeCC
Q 027622 97 SAVRIDY-A-PYGQNPPH---THPRATEILVVLEGTLYVGFVTSNQL----------------------NNTLIAKVLNK 149 (221)
Q Consensus 97 s~~~v~l-~-pgg~~ppH---~Hp~a~Ei~yVl~G~~~~~~~~~~~~----------------------~~~~~~~~L~~ 149 (221)
.-.|..+ . .|.-.|.| +| +.-+...+.|+=+.-+..+..+ ..+..+..=++
T Consensus 197 ddyrFvy~Gp~gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qep 274 (427)
T KOG2131|consen 197 DDYRFVYAGPAGSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEP 274 (427)
T ss_pred CceeEEEeccCCCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccC
Confidence 3444443 3 35567888 77 4667788889888777655310 01223345589
Q ss_pred CcEEEEcCCCeEEEEeCCCC
Q 027622 150 GDVFVFPIGMIHFQFNIGKT 169 (221)
Q Consensus 150 GDv~v~P~G~~H~~~N~g~~ 169 (221)
|+++++|.|.-|...|.+++
T Consensus 275 ge~VFvPsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 275 GETVFVPSGWHHQVLNLGDT 294 (427)
T ss_pred CceeeccCccccccccccce
Confidence 99999999999999999986
No 128
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=59.79 E-value=24 Score=28.17 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=28.2
Q ss_pred CcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEE
Q 027622 117 ATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFV 154 (221)
Q Consensus 117 a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v 154 (221)
...+.+|++|.+.+...++++ .......+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G--~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESG--EEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCC--cEeeeEEccCCCEee
Confidence 467899999999998877653 455567899999774
No 129
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=59.36 E-value=67 Score=25.64 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=40.4
Q ss_pred CCccCCCCcEEEEEEeCEEEEEEEccCC---------C-------CCeeEEEEeCCCcEEEEcCCCeEEEE
Q 027622 110 PPHTHPRATEILVVLEGTLYVGFVTSNQ---------L-------NNTLIAKVLNKGDVFVFPIGMIHFQF 164 (221)
Q Consensus 110 ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~---------~-------~~~~~~~~L~~GDv~v~P~G~~H~~~ 164 (221)
.+=.|.+-..+.|+++|+-++++..... + +... ...|++|+..+|-++..|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~-~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGE-TVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCc-EEEeCCCeEEEECCcccccCC
Confidence 4456888899999999999988864321 0 1112 578999999999999999764
No 130
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=57.76 E-value=30 Score=24.72 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=37.6
Q ss_pred EEEcCCCcCCCccCC---CCcEEEEE--Ee-CE-----EEEEEEccC-CCCCeeEEEE-----eCCCcEEEEcC-CCeEE
Q 027622 101 IDYAPYGQNPPHTHP---RATEILVV--LE-GT-----LYVGFVTSN-QLNNTLIAKV-----LNKGDVFVFPI-GMIHF 162 (221)
Q Consensus 101 v~l~pgg~~ppH~Hp---~a~Ei~yV--l~-G~-----~~~~~~~~~-~~~~~~~~~~-----L~~GDv~v~P~-G~~H~ 162 (221)
..+.+|+...||+.. ....+.++ +. .. +...+.... .+ ....... .++|++++|+. ...|.
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~-~~~~~~~~~~~~p~~g~~v~F~~~~~~H~ 82 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSD-DVSREVEDFDIVPKPGRLVIFPSDNSLHG 82 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TS-STCEEEGGGSEE-BTTEEEEEESCTCEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCC-CcceEEEeccccCCCCEEEEEeCCCCeec
Confidence 356889999999876 33444444 34 11 333333310 00 1111233 88999999999 99999
Q ss_pred EEeC
Q 027622 163 QFNI 166 (221)
Q Consensus 163 ~~N~ 166 (221)
..-.
T Consensus 83 v~~v 86 (100)
T PF13640_consen 83 VTPV 86 (100)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 8766
No 131
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=57.03 E-value=40 Score=26.57 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=46.0
Q ss_pred CCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEE----eCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEE
Q 027622 88 IPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVL----EGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQ 163 (221)
Q Consensus 88 ~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl----~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~ 163 (221)
-|+++ .+...++.+++|....-- +..|+...+ .|.+.+++-++. + ..++|||++.+-.|....+
T Consensus 11 ~P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~---~----~~~~PGDIirLt~Gy~Si~ 78 (134)
T KOG3416|consen 11 KPGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEE---G----CLIQPGDIIRLTGGYASIF 78 (134)
T ss_pred Chhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCc---C----cccCCccEEEecccchhhh
Confidence 46666 466777777777654322 345666665 678888887754 2 5699999999999987766
Q ss_pred Ee
Q 027622 164 FN 165 (221)
Q Consensus 164 ~N 165 (221)
++
T Consensus 79 qg 80 (134)
T KOG3416|consen 79 QG 80 (134)
T ss_pred cC
Confidence 54
No 132
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=54.44 E-value=1.2e+02 Score=24.68 Aligned_cols=74 Identities=15% Similarity=0.036 Sum_probs=49.1
Q ss_pred ceEEEEEEE--cCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCC-----------------CCCeeEEEEeCCCcEEEE
Q 027622 95 GISAVRIDY--APYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQ-----------------LNNTLIAKVLNKGDVFVF 155 (221)
Q Consensus 95 gis~~~v~l--~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~-----------------~~~~~~~~~L~~GDv~v~ 155 (221)
++.+...++ .+....-+=.|.+-..+-++++|+=.+++....+ +.......+|.+|+..+|
T Consensus 45 ~if~~v~~~~t~~~~~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiF 124 (154)
T COG2731 45 NIFYNVMEDETQEAEEKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIF 124 (154)
T ss_pred cEEEEEEeccccchhhcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEE
Confidence 344444443 2333445566777899999999998888865431 011123578999999999
Q ss_pred cCCCeEEEEeCCC
Q 027622 156 PIGMIHFQFNIGK 168 (221)
Q Consensus 156 P~G~~H~~~N~g~ 168 (221)
=+|.+|.......
T Consensus 125 fP~e~H~P~c~~~ 137 (154)
T COG2731 125 FPGEPHRPGCNVG 137 (154)
T ss_pred CCCCccccccccC
Confidence 9999997644444
No 133
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=50.51 E-value=47 Score=27.65 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=35.3
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEE
Q 027622 100 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVF 155 (221)
Q Consensus 100 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~ 155 (221)
...+++|...- +-......+.+|++|.+.+.....+ ++..-..+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~---~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQD---RETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCC---ceEEEEEeCCCchhhh
Confidence 45577776543 2333467899999999999875432 4445678899997643
No 134
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=48.94 E-value=1.7e+02 Score=25.67 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=54.6
Q ss_pred EEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccC-C-CCCeeEEEEeCCCcEEEEcC
Q 027622 80 VTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSN-Q-LNNTLIAKVLNKGDVFVFPI 157 (221)
Q Consensus 80 v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~-~-~~~~~~~~~L~~GDv~v~P~ 157 (221)
+..++. +-++..- +.+...++.+|.....-.-. -+-++++++|++++...++. + -+.|.-.++=++=|++++|.
T Consensus 16 v~~vtp-~sagw~Y--VGF~~~~L~~Ges~~~~~~~-~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~ 91 (270)
T COG3718 16 VQDVTP-ESAGWEY--VGFRLLRLAAGESATEETGD-RERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPA 91 (270)
T ss_pred eEEecC-CCCCcee--EEEEEEEccCCCcccccCCC-ceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecC
Confidence 444443 3344443 44555678899877766554 34556678999998865432 0 01343345556779999999
Q ss_pred CCeEEEEeCCCC
Q 027622 158 GMIHFQFNIGKT 169 (221)
Q Consensus 158 G~~H~~~N~g~~ 169 (221)
|.-..+...++-
T Consensus 92 g~~~~vtA~t~~ 103 (270)
T COG3718 92 GSAFSVTATTDL 103 (270)
T ss_pred CceEEEEeecce
Confidence 999888766553
No 135
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=47.62 E-value=1.3e+02 Score=23.65 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=25.7
Q ss_pred eEEEEEEEcCC--CcCCCccCCCCcEEEEEEeCEEEEEEE
Q 027622 96 ISAVRIDYAPY--GQNPPHTHPRATEILVVLEGTLYVGFV 133 (221)
Q Consensus 96 is~~~v~l~pg--g~~ppH~Hp~a~Ei~yVl~G~~~~~~~ 133 (221)
+.+...++... ....+=.|.+-.-+-|+++|+=++++.
T Consensus 46 vf~~v~~~~t~~~~~~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 46 IFMNVMEPETAEPVSKKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred EEEEEeeCCCCChhhcchhhhhheEEEEEeecceEEEEEe
Confidence 44444443333 334455677789999999999999985
No 136
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=47.28 E-value=1.3e+02 Score=24.72 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=47.5
Q ss_pred CCccCCCCcEEEEEEeC-EEEEEEEccCC--CCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 027622 110 PPHTHPRATEILVVLEG-TLYVGFVTSNQ--LNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAIAAL 177 (221)
Q Consensus 110 ppH~Hp~a~Ei~yVl~G-~~~~~~~~~~~--~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~~~~ 177 (221)
.+=.||..++.+.-+.| ..++-++...+ .-+.+..+....|+.+.+-+|+.|...-.=+.+..++++-
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvd 142 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVD 142 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEe
Confidence 33457888999999999 77777764321 1145778999999999999999997543334445555443
No 137
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.57 E-value=9.4 Score=32.75 Aligned_cols=41 Identities=27% Similarity=0.210 Sum_probs=33.8
Q ss_pred cceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEc
Q 027622 94 LGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVT 134 (221)
Q Consensus 94 ~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~ 134 (221)
-++|+..+-++|++++|+|-||.-+-+.-++-|++.+.--+
T Consensus 73 D~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyD 113 (236)
T KOG4281|consen 73 DRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYD 113 (236)
T ss_pred CceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeecc
Confidence 36788889999999999999996666667889998876543
No 138
>PF13994 PgaD: PgaD-like protein
Probab=43.79 E-value=29 Score=27.27 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.2
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHh
Q 027622 197 PINPDFLAKAFQLDVNVVKELEA 219 (221)
Q Consensus 197 ~ip~~vl~~af~~~~~~v~~l~~ 219 (221)
+++++-+|+.|++++++++++++
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~ 122 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQ 122 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHh
Confidence 38999999999999999999976
No 139
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=43.71 E-value=1e+02 Score=24.41 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=37.4
Q ss_pred ceEEEEEEEcCCC--cCCCccCCCCcEEEEEEeCEEEEEEE-ccCC-----------------CCCeeEEEEeCCCcEEE
Q 027622 95 GISAVRIDYAPYG--QNPPHTHPRATEILVVLEGTLYVGFV-TSNQ-----------------LNNTLIAKVLNKGDVFV 154 (221)
Q Consensus 95 gis~~~v~l~pgg--~~ppH~Hp~a~Ei~yVl~G~~~~~~~-~~~~-----------------~~~~~~~~~L~~GDv~v 154 (221)
++.+...++.... -..+=.|.+-.-+-|+++|+=++++. +... ++.......|++|+.++
T Consensus 45 ~~~~~v~~~~t~~~~~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~i 124 (153)
T PF04074_consen 45 DLFANVQEYETKPEEERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAI 124 (153)
T ss_dssp S-EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEE
T ss_pred cEEEEeeccccccccccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEE
Confidence 3444444444443 33455688889999999999999983 2210 01111245799999999
Q ss_pred EcCCCeEEEE
Q 027622 155 FPIGMIHFQF 164 (221)
Q Consensus 155 ~P~G~~H~~~ 164 (221)
|=++-+|.-.
T Consensus 125 ffP~d~H~p~ 134 (153)
T PF04074_consen 125 FFPEDAHRPG 134 (153)
T ss_dssp E-TT--EEEE
T ss_pred ECCCcccccc
Confidence 9999999843
No 140
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=43.13 E-value=54 Score=33.22 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=34.4
Q ss_pred EEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEE
Q 027622 98 AVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 153 (221)
Q Consensus 98 ~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~ 153 (221)
+....+.||..+-.-=.+ ++++.+|++|++.+...+.. ++..-..+++||.|
T Consensus 397 ~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~~~~---~e~~l~~l~~Gd~F 448 (823)
T PLN03192 397 MKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDSEGE---KERVVGTLGCGDIF 448 (823)
T ss_pred hheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEecCC---cceeeEEccCCCEe
Confidence 344567888755333233 67899999999998643221 44445679999977
No 141
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=42.96 E-value=29 Score=27.64 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHh
Q 027622 196 PPINPDFLAKAFQLDVNVVKELEA 219 (221)
Q Consensus 196 p~ip~~vl~~af~~~~~~v~~l~~ 219 (221)
|.++++-++++|++++|.+++|++
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~ 111 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQK 111 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhc
Confidence 569999999999999999999976
No 142
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=42.94 E-value=40 Score=34.25 Aligned_cols=74 Identities=16% Similarity=0.099 Sum_probs=46.5
Q ss_pred EEcCCCcC-CCccCCCCcEEEEEEeCEEEE----------------EEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEE
Q 027622 102 DYAPYGQN-PPHTHPRATEILVVLEGTLYV----------------GFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 164 (221)
Q Consensus 102 ~l~pgg~~-ppH~Hp~a~Ei~yVl~G~~~~----------------~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~ 164 (221)
-+++||.. --|.+. +.-++|.|.++-.- -|++. ..+.+.-.|++|+.++||.|.+|...
T Consensus 142 hidfggtsvwyhil~-G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~---VdkC~~~~l~~g~T~~iPsGwIhAV~ 217 (776)
T KOG1633|consen 142 HIDFGGTSVWYHILA-GEKTFYLIPPTCENLELYECWESSTPQDEIFFGDC---VDKCYKCILKQGQTLFIPSGWIHAVL 217 (776)
T ss_pred ccCCCCcchhhhhhc-cccceeeeCCcccchhhhhhhhhcccccccccCCc---cceeEEEEeccCceEecccceeEeee
Confidence 35666644 347774 67777777664321 11222 25566788999999999999999987
Q ss_pred eCCCCcEEEEEEEeC
Q 027622 165 NIGKTNAVAIAALSS 179 (221)
Q Consensus 165 N~g~~~a~~~~~~~s 179 (221)
-..+.-+...-.+.+
T Consensus 218 Tp~d~l~fgGnflhs 232 (776)
T KOG1633|consen 218 TPTDCLVFGGNFLHS 232 (776)
T ss_pred cCcchheeccchhhh
Confidence 765554444333333
No 143
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=40.86 E-value=34 Score=27.78 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=22.2
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHh
Q 027622 196 PPINPDFLAKAFQLDVNVVKELEA 219 (221)
Q Consensus 196 p~ip~~vl~~af~~~~~~v~~l~~ 219 (221)
|.++++-+++.|+++++.++++++
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~ 120 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKS 120 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHh
Confidence 469999999999999999999986
No 144
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=40.60 E-value=57 Score=21.81 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=22.7
Q ss_pred EEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCC
Q 027622 129 YVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIG 167 (221)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g 167 (221)
++++-|.. ++.++..|++|..|.--+|.++.-.-.|
T Consensus 11 rVQlTD~K---gr~~Ti~L~~G~~fhThrG~i~HDdlIG 46 (54)
T PF14801_consen 11 RVQLTDPK---GRKHTITLEPGGEFHTHRGAIRHDDLIG 46 (54)
T ss_dssp EEEEEETT-----EEEEE--TT-EEEETTEEEEHHHHTT
T ss_pred EEEEccCC---CCeeeEEECCCCeEEcCccccchhheec
Confidence 45666765 7888999999999999998876443344
No 145
>PLN02288 mannose-6-phosphate isomerase
Probab=40.22 E-value=22 Score=33.15 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=18.1
Q ss_pred EEEeCCCcEEEEcCCCeEEE
Q 027622 144 AKVLNKGDVFVFPIGMIHFQ 163 (221)
Q Consensus 144 ~~~L~~GDv~v~P~G~~H~~ 163 (221)
...|++||.+++|+|.+|..
T Consensus 252 ~v~L~PGeaifl~ag~~HAY 271 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAY 271 (394)
T ss_pred eEecCCCCEEEecCCCCcee
Confidence 36899999999999999965
No 146
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=39.92 E-value=1.9e+02 Score=22.87 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=47.0
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEe---CCCCcE
Q 027622 95 GISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFN---IGKTNA 171 (221)
Q Consensus 95 gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N---~g~~~a 171 (221)
|+++.|.+-+. ...+--+ ..=+.+|++|+=++.++++ .+...+|+.++.+..++-..+- ..++|.
T Consensus 5 gl~i~r~~~~~-~~~~~~y---~p~i~~vlQG~K~~~~g~~--------~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~ 72 (155)
T PF06719_consen 5 GLSIFRSSRPT-PPMPCVY---EPSICIVLQGSKRVHLGDQ--------VFEYDAGQYLVSSVDLPVESEVVEASPEEPY 72 (155)
T ss_pred CEEEEEECCCC-CCcceec---CCeEEEEEeeeEEEEECCc--------eEEecCCcEEEecCCCcEEEEEeeccCCCCE
Confidence 35666654322 2222222 3468999999999998743 5889999999999998865433 445676
Q ss_pred EEEEE
Q 027622 172 VAIAA 176 (221)
Q Consensus 172 ~~~~~ 176 (221)
..+..
T Consensus 73 l~l~l 77 (155)
T PF06719_consen 73 LALSL 77 (155)
T ss_pred EEEEE
Confidence 66543
No 147
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=39.89 E-value=21 Score=24.12 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=17.8
Q ss_pred CCHHHHHHhcCCCHHHHHHHHhcC
Q 027622 198 INPDFLAKAFQLDVNVVKELEAKF 221 (221)
Q Consensus 198 ip~~vl~~af~~~~~~v~~l~~~~ 221 (221)
=.+.-|.+.+|++++++++||+++
T Consensus 44 s~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 44 SVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp SHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHc
Confidence 367789999999999999999763
No 148
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=38.93 E-value=56 Score=25.71 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=21.0
Q ss_pred eeEEEEeCCCcEEEEcCCCeEEE-EeCCCC
Q 027622 141 TLIAKVLNKGDVFVFPIGMIHFQ-FNIGKT 169 (221)
Q Consensus 141 ~~~~~~L~~GDv~v~P~G~~H~~-~N~g~~ 169 (221)
......+++||++++...++|.- .|.++.
T Consensus 178 ~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 178 EWVPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp GCEEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred ceEEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 44577899999999999999975 455544
No 149
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=38.74 E-value=1.3e+02 Score=20.75 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=34.4
Q ss_pred EeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 027622 124 LEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGKTNAVAI 174 (221)
Q Consensus 124 l~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~~~a~~~ 174 (221)
..|+..+.+.+.++ ..++...+++||..-++.+..-. ...|+..++-+
T Consensus 5 a~~~sWv~V~d~dG--~~~~~~~l~~G~~~~~~~~~~~~-i~iGna~~v~v 52 (77)
T PF13464_consen 5 ATGDSWVEVTDADG--KVLFSGTLKAGETKTFEGKEPFR-IRIGNAGAVEV 52 (77)
T ss_pred EeCCeEEEEEeCCC--cEeeeeeeCCCcEEEEeCCCCEE-EEEeCCCcEEE
Confidence 45777788875553 78899999999999995555444 35677666654
No 150
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=38.54 E-value=44 Score=26.88 Aligned_cols=38 Identities=18% Similarity=0.478 Sum_probs=26.0
Q ss_pred CCCCccEEeecCCCCCcceeCCcccCCCCCCCCCCeeeec
Q 027622 26 PSPLQDICVAIDEPKNAVFVNGKFCKDPKLAKAQDFFLSG 65 (221)
Q Consensus 26 ~~~~~dfcv~~~~~~~~~~~~g~~ck~~~~v~~~dF~~~~ 65 (221)
|.-..|||++.+.....+.+-|.-- +.....+||+|..
T Consensus 105 PaG~YDy~I~~P~~~~kiwIaGd~g--~~~tr~dDy~fEA 142 (161)
T PF10365_consen 105 PAGTYDYCIAAPQPGGKIWIAGDGG--DGPTRGDDYVFEA 142 (161)
T ss_pred cCceeEEEEecCCCCCeEEEecCCC--CCCccccceEEec
Confidence 5667899999665555677777532 2234589999974
No 151
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.39 E-value=56 Score=32.99 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=34.5
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEE
Q 027622 102 DYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 153 (221)
Q Consensus 102 ~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~ 153 (221)
-+.||..+-..=.+ -+|+.+|++|.+...-.+.+ +......|++||.+
T Consensus 446 ~f~pge~iireGd~-v~~myFI~rG~le~~~~~~g---~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDP-VTDMYFIVRGSLESITTDGG---GFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCc-cceeEEEEeeeEEEEEccCC---ceEEEEEecCCCcc
Confidence 35666666666566 68999999999976644322 44557899999976
No 152
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=33.56 E-value=15 Score=27.67 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=22.8
Q ss_pred ccEEeecCCCCCcceeCCcccCCCCCCCCCCeee
Q 027622 30 QDICVAIDEPKNAVFVNGKFCKDPKLAKAQDFFL 63 (221)
Q Consensus 30 ~dfcv~~~~~~~~~~~~g~~ck~~~~v~~~dF~~ 63 (221)
+|.|-. +.+.+||..+|+.+.|...|=.-
T Consensus 28 k~~~~~-----GrV~vNG~~aKpS~~VK~GD~l~ 56 (100)
T COG1188 28 KEMIEG-----GRVKVNGQRAKPSKEVKVGDILT 56 (100)
T ss_pred HHHHHC-----CeEEECCEEcccccccCCCCEEE
Confidence 455555 56999999999999998888543
No 153
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=33.05 E-value=51 Score=20.51 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=18.4
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHhcC
Q 027622 197 PINPDFLAKAFQLDVNVVKELEAKF 221 (221)
Q Consensus 197 ~ip~~vl~~af~~~~~~v~~l~~~~ 221 (221)
+.+..-+++.+|++..+|.++.++|
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~ 41 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRY 41 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT--
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 5888999999999999999998764
No 154
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=30.37 E-value=1.7e+02 Score=26.92 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=62.4
Q ss_pred CCCeeEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEE-
Q 027622 75 RLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF- 153 (221)
Q Consensus 75 ~~g~~v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~- 153 (221)
..|..|..++.+- ++.-..+.|+.++..-+.-.+..-.+..+-.+++..-++.++.+++ ..+-...|++||-+
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG--~~vsVt~Lk~GD~VL 323 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDG--KPVSVVDLKPGDEVL 323 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCC--CEeeeeecCCCCEEE
Confidence 4577787776432 3345788899888887766665556889999999999999998762 33556889999954
Q ss_pred -EEcCCCeEEEEeC
Q 027622 154 -VFPIGMIHFQFNI 166 (221)
Q Consensus 154 -v~P~G~~H~~~N~ 166 (221)
+.+.+--|+-...
T Consensus 324 ~~~~~~~RHfG~~i 337 (344)
T PRK02290 324 GYLEEAARHFGMAI 337 (344)
T ss_pred EEecCCccccccee
Confidence 5666677765433
No 155
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=30.37 E-value=19 Score=36.71 Aligned_cols=60 Identities=18% Similarity=0.083 Sum_probs=38.2
Q ss_pred EcCCCcCCCccCCCCcEEEEEEeC---EEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEEeCCC
Q 027622 103 YAPYGQNPPHTHPRATEILVVLEG---TLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 103 l~pgg~~ppH~Hp~a~Ei~yVl~G---~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~N~g~ 168 (221)
.+-|.-+++-.||-.++-.|+-++ ++.-.++ -+-.+++=.-||.++||+|.+|..+|.-.
T Consensus 762 ~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyG------Ve~WtfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 762 KEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYG------VEPWTFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred HHhcCCCCcccCCCcccceeccHHHHHHHHHHhC------CCccchhhcccceEEecCCCcHHhhhhhh
Confidence 344555666667766666666544 1111111 11235677889999999999999998653
No 156
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=29.54 E-value=1.6e+02 Score=25.28 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.4
Q ss_pred EEEeCCCcEEEEcCCCeEEEEeCCC
Q 027622 144 AKVLNKGDVFVFPIGMIHFQFNIGK 168 (221)
Q Consensus 144 ~~~L~~GDv~v~P~G~~H~~~N~g~ 168 (221)
...+++|++++||...+|...-+..
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt~ 166 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVTR 166 (226)
T ss_pred EEecCCCeEEEECCCCceeeeeccC
Confidence 5778999999999999999876544
No 157
>COG1741 Pirin-related protein [General function prediction only]
Probab=27.81 E-value=4.3e+02 Score=23.41 Aligned_cols=43 Identities=21% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEE
Q 027622 87 QIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVG 131 (221)
Q Consensus 87 ~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~ 131 (221)
..|.-+.. +.+..+.+++|...+.+ =+.-.-++||++|++.+.
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 44555555 78888899999987776 112346899999988764
No 158
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=26.34 E-value=1.2e+02 Score=20.14 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=16.6
Q ss_pred ccCCCCCccEEeecCCCCCcceeCCcccCC
Q 027622 23 AFDPSPLQDICVAIDEPKNAVFVNGKFCKD 52 (221)
Q Consensus 23 ~~d~~~~~dfcv~~~~~~~~~~~~g~~ck~ 52 (221)
-+-|--..-=||+. |......++=-||..
T Consensus 22 psapyeikspcvs~-didd~s~ls~npcir 50 (60)
T PF10913_consen 22 PSAPYEIKSPCVSA-DIDDNSSLSVNPCIR 50 (60)
T ss_pred CCCCccccCCcccc-ccCCCcccccccccc
Confidence 45555677779985 333333444557753
No 159
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=26.08 E-value=63 Score=24.99 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=19.1
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHhc
Q 027622 197 PINPDFLAKAFQLDVNVVKELEAK 220 (221)
Q Consensus 197 ~ip~~vl~~af~~~~~~v~~l~~~ 220 (221)
+++|..+++..++++++|++++++
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~ 95 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKE 95 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHH
T ss_pred CCCHHHHHhccCCCHHHHHHHHHH
Confidence 599999999999999999999864
No 160
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=25.14 E-value=88 Score=27.29 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=26.9
Q ss_pred EEEEeCCCcEEEEcCCCeEEE-EeCCCCc-EEEEEEEeC
Q 027622 143 IAKVLNKGDVFVFPIGMIHFQ-FNIGKTN-AVAIAALSS 179 (221)
Q Consensus 143 ~~~~L~~GDv~v~P~G~~H~~-~N~g~~~-a~~~~~~~s 179 (221)
....+++||+++|..-++|.- .|.++.+ ..++..|++
T Consensus 211 v~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~ 249 (277)
T TIGR02408 211 STFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNS 249 (277)
T ss_pred eeeccCCceEEEEccccccCCCCCCCCCcceeEEEEEec
Confidence 356789999999999999974 5666543 444556664
No 161
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=25.03 E-value=77 Score=29.06 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=55.2
Q ss_pred ccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCC------C--------------------
Q 027622 85 VEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQ------L-------------------- 138 (221)
Q Consensus 85 ~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~------~-------------------- 138 (221)
--.+|+.++.++.+...-.+.|.+.|.|.-|. .-++.=+.|+.++.+.-... .
T Consensus 239 yc~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~f 317 (355)
T KOG2132|consen 239 YCSFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAF 317 (355)
T ss_pred eeecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhh
Confidence 34566666655666665566688999997774 67788888988888764321 0
Q ss_pred ----CCeeEEEEeCCCcEEEEcCCCeEEEEeC
Q 027622 139 ----NNTLIAKVLNKGDVFVFPIGMIHFQFNI 166 (221)
Q Consensus 139 ----~~~~~~~~L~~GDv~v~P~G~~H~~~N~ 166 (221)
..+.....|++||++++|+-.-|+.+..
T Consensus 318 p~~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 318 PKFAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred hHHHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 0011224689999999999999987644
No 162
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=24.64 E-value=2.4e+02 Score=26.08 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=61.7
Q ss_pred CCCeeEEEecccCCCCCCccceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEE-
Q 027622 75 RLGFSVTNANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF- 153 (221)
Q Consensus 75 ~~g~~v~~~~~~~~P~ln~~gis~~~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~- 153 (221)
..|..|..++.+- ++.-+.+.|+.++..-+...+....+.++-.+++..-++.+..+++ ..+-...|++||-+
T Consensus 260 ~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G--~~vsVt~Lk~GD~vL 333 (354)
T PF01959_consen 260 RSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDG--EPVSVTELKPGDEVL 333 (354)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCC--CEeeeeecCCCCEEE
Confidence 4577777776432 2345788888888777665555557899999999999999998763 33556789999955
Q ss_pred -EEcCCCeEEEEeC
Q 027622 154 -VFPIGMIHFQFNI 166 (221)
Q Consensus 154 -v~P~G~~H~~~N~ 166 (221)
+++.+--|+-...
T Consensus 334 ~~~~~~~RHfG~~I 347 (354)
T PF01959_consen 334 VYLEEAGRHFGMKI 347 (354)
T ss_pred EEecCCCcccceEe
Confidence 5667777765443
No 163
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=24.24 E-value=1.3e+02 Score=24.97 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=32.0
Q ss_pred EEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcCCCeEEEE
Q 027622 120 ILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPIGMIHFQF 164 (221)
Q Consensus 120 i~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~G~~H~~~ 164 (221)
+..-++|+..+.+... +.++..+|.+||-+++.++.+=.+.
T Consensus 132 ~~~~l~G~G~v~l~~~----G~i~~i~L~~ge~~~Vd~~~lVA~~ 172 (215)
T PF01987_consen 132 FMLKLSGRGTVFLSGY----GAIYEIDLAPGEEIIVDPGHLVAWS 172 (215)
T ss_dssp EEEEEESSCEEEEEEC----CSEEEEEEE-EEEEEEEGGGEEEEE
T ss_pred EEEEEEEEEEEEEEeC----CcEEEEEccCCceEEEcCCCEEEEC
Confidence 3456789998888765 6788999999999999998876654
No 164
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=21.79 E-value=1.2e+02 Score=25.00 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=22.1
Q ss_pred CCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEEEEcC
Q 027622 116 RATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVFVFPI 157 (221)
Q Consensus 116 ~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~v~P~ 157 (221)
...-++|+++|++.+.... + ...|.+||.+++-.
T Consensus 134 ~~~~l~~~~~G~~~i~~~~------~--~~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 134 ASTVLVYVLEGAWSITEGG------N--CISLSAGDLLLIDD 167 (184)
T ss_dssp -SEEEEEESSS-EEECCCE------E--EEEE-TT-EEEEES
T ss_pred CCEEEEEEeeCcEEEecCC------C--ceEcCCCCEEEEeC
Confidence 3567789999987754321 1 58899999998877
No 165
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=20.46 E-value=1.3e+02 Score=29.95 Aligned_cols=46 Identities=30% Similarity=0.340 Sum_probs=30.6
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCEEEEEEEccCCCCCeeEEEEeCCCcEE
Q 027622 100 RIDYAPYGQNPPHTHPRATEILVVLEGTLYVGFVTSNQLNNTLIAKVLNKGDVF 153 (221)
Q Consensus 100 ~v~l~pgg~~ppH~Hp~a~Ei~yVl~G~~~~~~~~~~~~~~~~~~~~L~~GDv~ 153 (221)
...-.||.+. -|+-..-+-+.||++|++++-=.|+ +.-.|.+||+|
T Consensus 573 ~~H~APGDLl-YHtGESvDaLcFvVsGSLEVIQDDE-------VVAILGKGDVF 618 (971)
T KOG0501|consen 573 TNHCAPGDLL-YHTGESVDALCFVVSGSLEVIQDDE-------VVAILGKGDVF 618 (971)
T ss_pred hccCCCccee-eecCCccceEEEEEecceEEeecCc-------EEEEeecCccc
Confidence 3344555533 2444445688999999999764333 35789999987
No 166
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=20.08 E-value=77 Score=29.14 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=16.0
Q ss_pred EEeCCCcEEEEcCCCeEEEE
Q 027622 145 KVLNKGDVFVFPIGMIHFQF 164 (221)
Q Consensus 145 ~~L~~GDv~v~P~G~~H~~~ 164 (221)
..|++|+.+++|+|.+|...
T Consensus 252 v~L~pGeaifl~a~~~HAYl 271 (373)
T PF01238_consen 252 VELQPGEAIFLPAGEPHAYL 271 (373)
T ss_dssp EEE-TT-EEEEHTTHHEEEE
T ss_pred EEecCCceEEecCCCccccc
Confidence 68999999999999999653
Done!