BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027623
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DTO|A Chain A, Crystal Structure Of The Metal-Dependent Hd Domain-
Containing Hydrolase Bh2835 From Bacillus Halodurans,
Northeast Structural Genomics Consortium Target Bhr130.
pdb|3DTO|B Chain B, Crystal Structure Of The Metal-Dependent Hd Domain-
Containing Hydrolase Bh2835 From Bacillus Halodurans,
Northeast Structural Genomics Consortium Target Bhr130.
pdb|3DTO|C Chain C, Crystal Structure Of The Metal-Dependent Hd Domain-
Containing Hydrolase Bh2835 From Bacillus Halodurans,
Northeast Structural Genomics Consortium Target Bhr130.
pdb|3DTO|D Chain D, Crystal Structure Of The Metal-Dependent Hd Domain-
Containing Hydrolase Bh2835 From Bacillus Halodurans,
Northeast Structural Genomics Consortium Target Bhr130
Length = 223
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 123/219 (56%), Gaps = 10/219 (4%)
Query: 2 ESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLH 61
++ ++ AE V++ + + HD H+ RV A ++ +E + + +V++AAL H
Sbjct: 4 QAILQSAEAWVKKQLXDEYSGHDWYHIRRVTLXAKAIGEQEKV-----DVFVVQIAALFH 58
Query: 62 DIGDYKYLRDP-SEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEF 120
D+ D K + DP + ++ + ++ E G+ K +II + FK G + + E
Sbjct: 59 DLIDDKLVDDPETAKQQLIDWXEAAGVPSQKIDHTXDIINTISFK---GGHGQSLATREA 115
Query: 121 GVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFH 180
VVQDADRLDA+GAIGIAR F + G++ + ++DP + R + E+Y + + T +NHF+
Sbjct: 116 XVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELPIRETXTVEEY-RHGKSTAINHFY 174
Query: 181 EKLLKLKDLMKTEAGQRRAEKRHKXXXXXXXXXXXXWDG 219
EKL KLKDL TE G++ A++RH W+G
Sbjct: 175 EKLFKLKDLXNTETGKQLAKERHVFXEQFIERFLSEWNG 213
>pdb|3DJB|A Chain A, Crystal Structure Of A Hd-Superfamily Hydrolase
(Bt9727_1981) From Bacillus Thuringiensis, Northeast
Structural Genomics Consortium Target Bur114
pdb|3DJB|B Chain B, Crystal Structure Of A Hd-Superfamily Hydrolase
(Bt9727_1981) From Bacillus Thuringiensis, Northeast
Structural Genomics Consortium Target Bur114
Length = 223
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 130/222 (58%), Gaps = 14/222 (6%)
Query: 2 ESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLH 61
+ ++ K V+ ++ + + HD H+ RV A+SL+ +EG + I+E AALLH
Sbjct: 4 QEKIEKTITFVKHILEKDASGHDWYHIRRVHKXAISLSEQEG-----GNRFIIEXAALLH 58
Query: 62 DIGDYKYLRDPSEE---KIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSP 118
D+ D K + SEE K V ++LE+ +EE + +L+II +K G S
Sbjct: 59 DVADEKL--NESEEAGXKKVSDWLEELHVEEEESKHVLHIIANXSYK---GGHGGKVESI 113
Query: 119 EFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNH 178
E +VQDADRLDA+GAIGIAR F +GG++ R+ +DP I PR +K++Y +K ++NH
Sbjct: 114 EGKLVQDADRLDALGAIGIARTFAYGGAKGRLXYDPTIPPREVXTKDEY-RKNNDPSLNH 172
Query: 179 FHEKLLKLKDLMKTEAGQRRAEKRHKXXXXXXXXXXXXWDGK 220
F+EKLLKLKDL T A ++ AE RH+ W+ +
Sbjct: 173 FYEKLLKLKDLXNTNAAKQEAEVRHRYXEQFIEQFXKEWNAQ 214
>pdb|2PJQ|A Chain A, Crystal Structure Of Q88u62_lacpl From Lactobacillus
Plantarum. Northeast Structural Genomics Target Lpr71
pdb|2PJQ|B Chain B, Crystal Structure Of Q88u62_lacpl From Lactobacillus
Plantarum. Northeast Structural Genomics Target Lpr71
pdb|2PJQ|C Chain C, Crystal Structure Of Q88u62_lacpl From Lactobacillus
Plantarum. Northeast Structural Genomics Target Lpr71
pdb|2PJQ|D Chain D, Crystal Structure Of Q88u62_lacpl From Lactobacillus
Plantarum. Northeast Structural Genomics Target Lpr71
Length = 231
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 13/205 (6%)
Query: 1 MESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALL 60
E+++ + + + + + H H+ RV LA LA++EG ++ + AA L
Sbjct: 8 TETQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGA-----NLNLTLAAAWL 62
Query: 61 HDIGDYKYLRDPS---EEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFS 117
HD+ D K +P+ ++ IV+ L + + + I II F G + S
Sbjct: 63 HDVIDDKLXANPAKAHQDLIVQ--LNAQNVTADDQTAIFAIIDHXSFSKSFNG--PQKLS 118
Query: 118 PEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVN 177
E VVQDADRLDAIGAIGIAR + G ++DPAI PR ++EQY + + T +N
Sbjct: 119 LEGQVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHXTREQY-RHQPGTAIN 177
Query: 178 HFHEKLLKLKDLMKTEAGQRRAEKR 202
HF+EKL KL L T+ + A R
Sbjct: 178 HFYEKLFKLAALXNTDTAKALAAHR 202
>pdb|3B57|A Chain A, Crystal Structure Of The Lin1889 Protein (Q92an1) From
Listeria Innocua. Northeast Structural Consortium Target
Lkr65
Length = 209
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 22/183 (12%)
Query: 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSE-EKIVENF 81
HD SH+ RV L+ + +EG + +ELAAL HD D K D E K + N+
Sbjct: 25 HDWSHIKRVWKLSKEIQSKEG-----GDLFTIELAALFHDYSDIKLTTDEQEATKTLINW 79
Query: 82 LEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCF 141
E + + +I+ II+ + FK + E +VQDADRLDAIGAIGIAR F
Sbjct: 80 XETKEIPSELIKKIIRIIQSVSFKK--GKNTFKALTIEEKIVQDADRLDAIGAIGIARTF 137
Query: 142 TFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEK 201
T+GG+ NR + + P++ TT+ HF++KLL +KD + TE + A++
Sbjct: 138 TYGGAHNREIANQN-NPKN-------------TTLQHFYDKLLLIKDQLNTETAKTIAKE 183
Query: 202 RHK 204
+ K
Sbjct: 184 KQK 186
>pdb|2QGS|A Chain A, Crystal Structure Of Se1688 Protein From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser89
pdb|2QGS|B Chain B, Crystal Structure Of Se1688 Protein From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser89
Length = 225
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 15/219 (6%)
Query: 4 RVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDI 63
+++KA + + + + HD +HV RV + A +A+ E + D++ ++EL++LLHD
Sbjct: 6 KIKKAYEYXKSFHQHDTTGHDIAHVERVYNNACYIAKRENIT---DTL-VIELSSLLHDT 61
Query: 64 GDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLAN-AEFSPEFGV 122
D K + ++ FL L ++L IIK ++ AG N + S + +
Sbjct: 62 VDSKLTDEILAYDQLKQFLSTLDLSSEISQQVLYIIKHXSYR---AGKNNHVKLSIDGEI 118
Query: 123 VQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQ---TTVNHF 179
V+DADRLDAIGAIGIAR F F G +P ++E + E+ + + HF
Sbjct: 119 VRDADRLDAIGAIGIARTFQFSGH----FGEPXWTETKLSNEELHTSLVEELDNSAIKHF 174
Query: 180 HEKLLKLKDLMKTEAGQRRAEKRHKXXXXXXXXXXXXWD 218
+EKL KLKDL T ++ AE+RH+ W+
Sbjct: 175 YEKLFKLKDLXHTPTAKKLAEERHQFXIQYLKQFXSEWN 213
>pdb|2PQ7|A Chain A, Crystal Structure Of Predicted Hd Superfamily Hydrolase
(104161995) From Uncultured Thermotogales Bacterium At
1.45 A Resolution
Length = 220
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 91/197 (46%), Gaps = 34/197 (17%)
Query: 19 NDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEE--- 75
+D +HD SH +RV + A +A E ++ +AALLHDI + P E
Sbjct: 29 DDPAHDISHTFRVXENASEIASREKC-----DLQKAIIAALLHDI------KRPHEALTG 77
Query: 76 --------KIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDAD 127
+ L G + S + I+ + GL + + ++QDAD
Sbjct: 78 VDHAESGAEYASGLLPTXGFDISFVAEVSKAIRSHRYS---GGLTPTSLTGK--ILQDAD 132
Query: 128 RLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKLK 187
RLDAIGA+ IAR F++ G LH PRS ++++NHFHEK+LK++
Sbjct: 133 RLDAIGAVAIARVFSYSGKTGTPLHSLQFSPRSS------YSGNSRSSINHFHEKILKIR 186
Query: 188 -DLMKTEAGQRRAEKRH 203
+ TE ++ AE R+
Sbjct: 187 PETFWTETARKXAEDRY 203
>pdb|3GW7|A Chain A, Crystal Structure Of A Metal-Dependent Phosphohydrolase
With Conserved Hd Domain (Yedj) From Escherichia Coli In
Complex With Nickel Ions. Northeast Structural Genomics
Consortium Target Er63
pdb|3GW7|B Chain B, Crystal Structure Of A Metal-Dependent Phosphohydrolase
With Conserved Hd Domain (Yedj) From Escherichia Coli In
Complex With Nickel Ions. Northeast Structural Genomics
Consortium Target Er63
Length = 239
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 31/204 (15%)
Query: 9 EKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKY 68
E ++ + DA+HD H RV A LA ++ + M ++ A HDI
Sbjct: 11 ENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADDDV-----DMLVILTACYFHDIVSLAK 65
Query: 69 LRDPSEEK------------IVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEF 116
P ++ + E F E K + + I F +IA L
Sbjct: 66 -NHPQRQRSSILAAEETRRLLREEF---EQFPAEKIEAVCHAIAAHSFSAQIAPL----- 116
Query: 117 SPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTV 176
+ E +VQDADRL+A+GAIG+AR F G+ L D D + +++ +
Sbjct: 117 TTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDG-----EDPFAQHRPLDDKRYAL 171
Query: 177 NHFHEKLLKLKDLMKTEAGQRRAE 200
+HF KLLKL M+T G++ A+
Sbjct: 172 DHFQTKLLKLPQTMQTARGKQLAQ 195
>pdb|2O6I|A Chain A, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|2O6I|B Chain B, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|3IRH|A Chain A, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|B Chain B, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|C Chain C, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|D Chain D, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
Length = 480
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 47 NPDSMEIVELAALLHDIG------DYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIK 100
N D I AALLHD+G ++++ D + E I + E++ +ILN +
Sbjct: 120 NDDERLITLCAALLHDVGHGPYSHTFEHIFDTNHEAITVQIITS---PETEVYQILNRVS 176
Query: 101 KMGFKDEIAGLANAEFSPEFGVVQ------DADRLDAI 132
F +++A + ++ P VVQ DADR+D +
Sbjct: 177 A-DFPEKVASVITKQY-PNPQVVQMISSQIDADRMDYL 212
>pdb|3TM8|A Chain A, Bd1817, A Hdg"y"p Protein From Bdellovibrio Bacteriovorus
pdb|3TM8|B Chain B, Bd1817, A Hdg"y"p Protein From Bdellovibrio Bacteriovorus
pdb|3TMB|A Chain A, Bd1817, A Hdg"y"p Protein From Bdellovibrio Bacteriovorus
pdb|3TMB|B Chain B, Bd1817, A Hdg"y"p Protein From Bdellovibrio Bacteriovorus
pdb|3TMC|A Chain A, Bd1817, A Hdg"y"p Protein From Bdellovibrio Bacteriovorus
pdb|3TMC|B Chain B, Bd1817, A Hdg"y"p Protein From Bdellovibrio Bacteriovorus
pdb|3TMD|A Chain A, Bd1817, A Hdg"y"p Protein From Bdellovibrio Bacteriovorus
Length = 328
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIG 64
+ H V L+++LA++ G+ ++P +++ L ALLHD G
Sbjct: 168 SHHGVTVSTLSIALAQKLGI-TDPKKTQLLTLGALLHDYG 206
>pdb|3MGM|A Chain A, Crystal Structure Of Human Nudt16
pdb|3MGM|B Chain B, Crystal Structure Of Human Nudt16
Length = 200
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 175 TVNHFHEKLLKLKDLMKTEAGQRRAE 200
V HF+ K L L++L+ EAG RA+
Sbjct: 107 VVAHFYAKRLTLEELLAVEAGATRAK 132
>pdb|3COU|A Chain A, Crystal Structure Of Human Nudix Motif 16 (Nudt16)
pdb|2XSQ|A Chain A, Crystal Structure Of Human Nudix Motif 16 (Nudt16) In
Complex With Imp And Magnesium
Length = 217
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 175 TVNHFHEKLLKLKDLMKTEAGQRRAE 200
V HF+ K L L++L+ EAG RA+
Sbjct: 128 VVAHFYAKRLTLEELLAVEAGATRAK 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,072,193
Number of Sequences: 62578
Number of extensions: 242387
Number of successful extensions: 884
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 23
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)