BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027623
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54168|YPGQ_BACSU Uncharacterized protein YpgQ OS=Bacillus subtilis (strain 168)
GN=ypgQ PE=4 SV=1
Length = 205
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 29/220 (13%)
Query: 5 VRKAEKL---VERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLH 61
+++AE++ V+ + + HD HV RV DLA + +E + IVE AAL+H
Sbjct: 4 LKQAEQIRTWVQSILTDESSGHDWHHVSRVADLAAYIGEKE-----KADLFIVETAALVH 58
Query: 62 DIGDYKYLRDPSEEKIVENF--LEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPE 119
D+ D K L D + E + L G+ + R+++II +M F+D LA S E
Sbjct: 59 DLIDVK-LPDTVRLSVSEVYDQLVFFGVGKENADRVIHIITRMSFRDR-GKLAKEPLSIE 116
Query: 120 FGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHF 179
VQDADRLDAIGA+GIAR F F G++ L+ +EQ+ HF
Sbjct: 117 GKAVQDADRLDAIGAVGIARAFMFAGAKGHGLY-----------------GDEQSAYAHF 159
Query: 180 HEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDG 219
KLL+LKD+M T+ + AE+RH FM +F+ + ++ G
Sbjct: 160 FHKLLRLKDMMNTDTARELAEERHNFMLQFVRQLEKDIPG 199
>sp|P46144|YEDJ_ECOLI Uncharacterized protein YedJ OS=Escherichia coli (strain K12)
GN=yedJ PE=1 SV=2
Length = 231
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 31/224 (13%)
Query: 9 EKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKY 68
E ++ + DA+HD H RV A LA ++ + M ++ A HDI
Sbjct: 11 ENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADDDV-----DMLVILTACYFHDIVSLAK 65
Query: 69 LRDPSEEK------------IVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEF 116
P ++ + E F E K + + I F +IA L
Sbjct: 66 -NHPQRQRSSILAAEETRRLLREEF---EQFPAEKIEAVCHAIAAHSFSAQIAPL----- 116
Query: 117 SPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTV 176
+ E +VQDADRL+A+GAIG+AR F G+ L D D + +++ +
Sbjct: 117 TTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDG-----EDPFAQHRPLDDKRYAL 171
Query: 177 NHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGK 220
+HF KLLKL M+T G++ A+ F+ EF+ + E G+
Sbjct: 172 DHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGE 215
>sp|Q5UR59|YL803_MIMIV Uncharacterized protein L803 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L803 PE=4 SV=1
Length = 243
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 37/216 (17%)
Query: 1 MESRVRKAEKLVERSMK-----GNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVE 55
ME+ L E +++ N A HD H VR+ A+ + E + SN ++ VE
Sbjct: 1 METNFIDLRNLTELTVREFMSNHNVAGHDVDHFIAVRNHAIKALKYENI-SNSKKLQ-VE 58
Query: 56 LAALLHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMG---FKDEIAGLA 112
AA+LHD+ D K + + + L+ KM NII FK I L
Sbjct: 59 FAAMLHDVDDPKIFSQSIDYQNAKYILD----TIFTKMSFENIISDCTYDVFKQGIVTLI 114
Query: 113 NAEFSPEFG----------VVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDV 162
+ + G + +DADRL+AIG IGI RC + + ++ + PR+
Sbjct: 115 SLVSCSKNGDDGVEESWMAIPRDADRLEAIGKIGIQRCTDY-ANHIKLPYYLDSTPRAKT 173
Query: 163 SKE-----------QYMKKEEQTT-VNHFHEKLLKL 186
S+E +Y + + ++H+++KLL +
Sbjct: 174 SEEALSFANRDRFDRYKNGHKSVSMIDHYYDKLLHI 209
>sp|Q979R3|TRM56_THEVO tRNA (cytidine(56)-2'-O)-methyltransferase OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=TV1097 PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 19/115 (16%)
Query: 26 SHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLEDE 85
+HV V++LA+++A++ +N D + +V ALLHDIG + ++ + + + L E
Sbjct: 190 NHVKSVKELAVAIAKK----TNAD-INLVTAGALLHDIGRTQ-VQGITHAVVGADILRRE 243
Query: 86 GLEESKKMRILNIIKK---MGFKDEIA---GLANAEFSPEF---GVVQDADRLDA 131
G+++ R+++I++K G + E A GL + PE +V AD L A
Sbjct: 244 GIDD----RVVSIVEKHIGAGIQSEEAVKLGLPPDNYVPETIEEMIVAHADNLFA 294
>sp|P77510|DPIB_ECOLI Sensor histidine kinase DpiB OS=Escherichia coli (strain K12)
GN=dpiB PE=1 SV=1
Length = 552
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 28 VWRVRDLALSLAREEG--LASNPDSMEIVELAALLHDIGDYKY---LRDPSEEKIVENFL 82
V R R+L L + G L+ P ++ E AA++ ++ D + LR KIVE FL
Sbjct: 403 VQRARELGLKMIIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFL 462
Query: 83 EDEG 86
DEG
Sbjct: 463 SDEG 466
>sp|A5N4N9|RPOB_CLOK5 DNA-directed RNA polymerase subunit beta OS=Clostridium kluyveri
(strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rpoB PE=3
SV=1
Length = 1234
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 72 PSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDAD---- 127
P+ ++I++N+ +E + E K I N+I K +D+I + E +GV D
Sbjct: 365 PALKQILDNYSSEESIREQIKKNIHNLIPKHIIRDDIYATVSYELGLAYGVGHTDDIDHL 424
Query: 128 ---RLDAIGAIGIARCFTFGGSR 147
RL ++G + + F G SR
Sbjct: 425 GNRRLRSVGEL-LQNQFRIGLSR 446
>sp|B9DYA1|RPOB_CLOK1 DNA-directed RNA polymerase subunit beta OS=Clostridium kluyveri
(strain NBRC 12016) GN=rpoB PE=3 SV=1
Length = 1234
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 72 PSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDAD---- 127
P+ ++I++N+ +E + E K I N+I K +D+I + E +GV D
Sbjct: 365 PALKQILDNYSSEESIREQIKKNIHNLIPKHIIRDDIYATVSYELGLAYGVGHTDDIDHL 424
Query: 128 ---RLDAIGAIGIARCFTFGGSR 147
RL ++G + + F G SR
Sbjct: 425 GNRRLRSVGEL-LQNQFRIGLSR 446
>sp|A6LPQ4|RPOB_CLOB8 DNA-directed RNA polymerase subunit beta OS=Clostridium
beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rpoB
PE=3 SV=1
Length = 1236
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 60 LHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPE 119
+ D+G + + P+ ++I++NF ++ ++E K I +I K +D+I + E
Sbjct: 353 ISDLGIKELVHYPTLKEILDNFSDEASIKEEIKKNISKLIPKHIIRDDIFATISYELGLT 412
Query: 120 FGV--VQDAD-----RLDAIGAIGIARCFTFGGSR 147
+G+ V D D RL ++G + + F G SR
Sbjct: 413 YGIGYVDDIDHLGNRRLRSVGEL-LQNQFRIGLSR 446
>sp|P59278|Y1745_ARATH Uncharacterized protein At1g51745 OS=Arabidopsis thaliana
GN=At1g51745 PE=2 SV=2
Length = 597
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Query: 44 LASNPDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMG 103
LAS P+ ++ + ++++G K S+ + N ED+G E K+MR L I K
Sbjct: 161 LASAPEQLQSSISSQEMNNVGASKVQ---SKRRRTPNDSEDDGTEGVKRMRGLEDIGK-- 215
Query: 104 FKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGS---RNRVLHDPAIK 157
E AG G+V+ LD I A+G++ + G + N+V ++K
Sbjct: 216 ---EQAG----------GIVEHKQDLDLICAVGLSDSVSNGNTIANGNKVCSPSSLK 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,110,726
Number of Sequences: 539616
Number of extensions: 3447722
Number of successful extensions: 11374
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 11351
Number of HSP's gapped (non-prelim): 44
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)