Query 027623
Match_columns 221
No_of_seqs 197 out of 1648
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 12:43:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10119 putative hydrolase; P 100.0 6.7E-59 1.5E-63 381.8 21.3 204 2-220 4-215 (231)
2 COG1418 Predicted HD superfami 100.0 3.4E-28 7.3E-33 199.8 12.2 192 11-220 23-222 (222)
3 TIGR03401 cyanamide_fam HD dom 99.9 9.5E-21 2.1E-25 156.1 13.2 123 2-134 38-168 (228)
4 PRK12703 tRNA 2'-O-methylase; 99.5 3E-13 6.6E-18 116.8 11.2 112 6-131 173-294 (339)
5 TIGR00295 conserved hypothetic 99.4 5.7E-12 1.2E-16 99.3 14.9 105 20-130 10-124 (164)
6 COG4339 Uncharacterized protei 99.4 3.3E-12 7.2E-17 98.2 11.9 157 21-205 38-196 (208)
7 PF01966 HD: HD domain; Inter 99.4 9.2E-13 2E-17 97.0 5.7 102 25-132 2-122 (122)
8 PRK13480 3'-5' exoribonuclease 99.3 5.3E-11 1.2E-15 102.5 11.8 102 25-131 161-278 (314)
9 PRK05007 PII uridylyl-transfer 99.2 1.4E-10 3E-15 112.6 12.6 121 19-140 454-592 (884)
10 smart00471 HDc Metal dependent 99.1 1.4E-09 3E-14 79.3 10.2 108 21-134 2-117 (124)
11 PRK12704 phosphodiesterase; Pr 99.1 1.5E-09 3.3E-14 99.6 12.6 93 21-131 333-428 (520)
12 COG2844 GlnD UTP:GlnB (protein 99.1 6E-10 1.3E-14 104.4 8.9 125 19-144 439-581 (867)
13 COG1713 Predicted HD superfami 99.0 6.7E-10 1.5E-14 88.0 7.4 106 7-131 5-131 (187)
14 TIGR03319 YmdA_YtgF conserved 99.0 2.7E-09 5.9E-14 97.8 11.8 91 23-131 329-422 (514)
15 PRK12705 hypothetical protein; 99.0 3.8E-09 8.3E-14 96.1 10.0 91 23-131 323-416 (508)
16 PRK00106 hypothetical protein; 99.0 9E-09 2E-13 94.2 12.5 91 23-131 350-443 (535)
17 TIGR00488 putative HD superfam 98.9 6.3E-09 1.4E-13 81.4 9.4 96 21-131 6-122 (158)
18 PRK03059 PII uridylyl-transfer 98.9 4.6E-09 1E-13 101.8 9.5 117 25-142 442-573 (856)
19 TIGR01693 UTase_glnD [Protein- 98.9 7.5E-09 1.6E-13 100.6 9.4 124 20-144 422-563 (850)
20 PRK05092 PII uridylyl-transfer 98.8 9.7E-09 2.1E-13 100.6 8.8 121 20-141 487-625 (931)
21 PRK07152 nadD putative nicotin 98.8 8.2E-09 1.8E-13 90.5 7.0 96 21-131 194-308 (342)
22 TIGR00277 HDIG uncharacterized 98.8 4.4E-08 9.5E-13 66.9 8.3 72 23-103 4-78 (80)
23 PRK01759 glnD PII uridylyl-tra 98.8 3.7E-08 8.1E-13 95.6 9.6 116 25-141 438-568 (854)
24 PRK00275 glnD PII uridylyl-tra 98.7 4.3E-08 9.4E-13 95.5 9.1 117 25-142 462-593 (895)
25 COG2206 c-di-GMP phosphodieste 98.7 2.3E-07 5.1E-12 81.3 12.5 103 22-133 147-273 (344)
26 PRK04374 PII uridylyl-transfer 98.7 6.2E-08 1.3E-12 94.0 9.4 115 25-140 451-580 (869)
27 COG3437 Response regulator con 98.7 1.5E-07 3.2E-12 81.3 9.4 103 24-134 186-311 (360)
28 PRK00227 glnD PII uridylyl-tra 98.7 8.2E-08 1.8E-12 90.8 8.5 75 25-106 382-458 (693)
29 cd00077 HDc Metal dependent ph 98.6 1.4E-07 3.1E-12 69.9 7.8 106 23-133 2-126 (145)
30 PRK03381 PII uridylyl-transfer 98.6 1.8E-07 3.9E-12 90.0 9.6 112 20-138 414-535 (774)
31 PRK10885 cca multifunctional t 98.4 9.7E-06 2.1E-10 72.7 14.2 70 25-104 229-307 (409)
32 COG1078 HD superfamily phospho 98.3 1.9E-06 4.1E-11 77.3 8.0 46 24-69 52-101 (421)
33 COG1480 Predicted membrane-ass 98.1 7.7E-06 1.7E-10 75.9 8.2 100 23-131 489-631 (700)
34 COG2316 Predicted hydrolase (H 98.1 2.2E-05 4.8E-10 60.9 8.8 95 23-131 47-142 (212)
35 TIGR02692 tRNA_CCA_actino tRNA 98.1 1.1E-05 2.3E-10 73.7 7.4 74 24-104 259-344 (466)
36 COG3481 Predicted HD-superfami 98.1 2.4E-05 5.2E-10 66.3 8.9 103 25-132 143-261 (287)
37 TIGR01596 cas3_HD CRISPR-assoc 98.1 2.7E-05 5.8E-10 61.4 8.5 77 25-105 2-103 (177)
38 COG3294 HD supefamily hydrolas 98.0 8.2E-06 1.8E-10 66.3 4.0 105 20-132 54-181 (269)
39 TIGR03276 Phn-HD phosphonate d 98.0 5.3E-05 1.2E-09 60.1 8.5 85 4-103 3-99 (179)
40 PRK01286 deoxyguanosinetriphos 97.9 7.8E-05 1.7E-09 65.0 9.3 101 23-130 62-179 (336)
41 PRK10854 exopolyphosphatase; P 97.9 0.00014 3.1E-09 67.1 11.3 82 22-105 327-415 (513)
42 PRK11031 guanosine pentaphosph 97.7 0.00014 3.1E-09 66.9 8.7 82 22-105 321-407 (496)
43 PRK13298 tRNA CCA-pyrophosphor 97.6 0.00025 5.5E-09 63.5 7.7 70 25-104 230-310 (417)
44 COG0232 Dgt dGTP triphosphohyd 97.5 0.00025 5.4E-09 63.1 7.0 51 23-73 68-118 (412)
45 PF12917 HD_2: HD containing h 97.5 0.00044 9.5E-09 56.1 7.0 96 25-132 31-142 (215)
46 PRK03007 deoxyguanosinetriphos 97.4 0.0004 8.7E-09 62.5 7.1 46 23-73 70-115 (428)
47 TIGR01353 dGTP_triPase deoxygu 97.4 0.00051 1.1E-08 61.1 7.6 48 23-70 38-91 (381)
48 PRK03826 5'-nucleotidase; Prov 97.4 0.0027 5.9E-08 51.3 11.0 104 21-145 26-149 (195)
49 PF13023 HD_3: HD domain; PDB: 97.4 0.00076 1.6E-08 53.1 7.3 110 21-150 20-141 (165)
50 COG1896 Predicted hydrolases o 97.2 0.018 3.9E-07 46.5 13.8 103 24-145 34-149 (193)
51 KOG3197 Predicted hydrolases o 97.2 0.011 2.3E-07 46.9 11.5 139 25-211 57-206 (210)
52 PF08668 HDOD: HDOD domain; I 97.1 0.0012 2.6E-08 52.9 5.7 72 24-103 95-194 (196)
53 PRK05318 deoxyguanosinetriphos 97.1 0.0018 4E-08 58.5 7.3 51 23-73 58-114 (432)
54 PRK01096 deoxyguanosinetriphos 96.9 0.0026 5.7E-08 57.6 6.6 51 23-73 61-121 (440)
55 TIGR03760 ICE_TraI_Pfluor inte 96.9 0.004 8.7E-08 51.2 6.9 63 4-66 43-120 (218)
56 KOG2681 Metal-dependent phosph 96.8 0.0033 7.1E-08 56.0 6.4 110 23-133 73-225 (498)
57 PF02092 tRNA_synt_2f: Glycyl- 96.5 0.054 1.2E-06 50.4 12.2 101 22-132 353-456 (548)
58 PF13875 DUF4202: Domain of un 96.4 0.056 1.2E-06 43.0 10.5 90 24-131 29-135 (185)
59 PRK01233 glyS glycyl-tRNA synt 96.4 0.06 1.3E-06 51.4 12.5 100 22-132 356-458 (682)
60 PRK04926 dgt deoxyguanosinetri 96.4 0.0092 2E-07 54.8 6.8 51 23-73 65-129 (503)
61 COG0751 GlyS Glycyl-tRNA synth 95.6 0.2 4.3E-06 47.6 11.6 100 22-132 360-462 (691)
62 TIGR00211 glyS glycyl-tRNA syn 95.3 0.34 7.4E-06 46.5 12.3 100 22-132 358-463 (691)
63 COG4341 Predicted HD phosphohy 95.2 0.08 1.7E-06 41.3 6.5 87 2-103 6-105 (186)
64 PRK14908 glycyl-tRNA synthetas 95.2 0.37 8E-06 47.8 12.5 101 22-132 673-776 (1000)
65 TIGR02621 cas3_GSU0051 CRISPR- 95.1 0.066 1.4E-06 52.2 7.0 39 25-66 677-715 (844)
66 COG1639 Predicted signal trans 95.0 0.12 2.5E-06 44.3 7.6 74 23-104 116-217 (289)
67 PF00233 PDEase_I: 3'5'-cyclic 94.3 0.043 9.3E-07 45.7 3.2 44 23-66 2-47 (237)
68 KOG3689 Cyclic nucleotide phos 94.1 0.21 4.5E-06 47.6 7.8 81 19-99 427-535 (707)
69 PF07514 TraI_2: Putative heli 94.1 0.1 2.2E-06 45.6 5.4 64 3-66 41-119 (327)
70 COG0248 GppA Exopolyphosphatas 93.4 1.5 3.3E-05 40.5 11.9 82 22-105 325-412 (492)
71 PRK11092 bifunctional (p)ppGpp 92.8 2.5 5.4E-05 40.8 12.8 53 4-66 22-77 (702)
72 KOG1573 Aldehyde reductase [Ge 90.8 0.68 1.5E-05 36.1 5.4 47 14-66 84-130 (204)
73 TIGR02578 cas_TM1811_Csm1 CRIS 87.3 0.27 5.7E-06 47.0 1.1 15 54-68 1-15 (648)
74 PF05153 DUF706: Family of unk 86.7 1.5 3.2E-05 36.6 5.0 44 17-66 53-96 (253)
75 TIGR00691 spoT_relA (p)ppGpp s 86.2 8.1 0.00018 37.3 10.5 32 25-66 21-52 (683)
76 PRK10872 relA (p)ppGpp synthet 80.4 42 0.0009 32.8 12.7 53 4-66 34-87 (743)
77 KOG1157 Predicted guanosine po 80.1 12 0.00025 33.8 8.1 72 52-133 118-199 (543)
78 PRK13299 tRNA CCA-pyrophosphor 78.5 4.2 9.1E-05 36.5 5.1 43 52-104 249-291 (394)
79 COG0317 SpoT Guanosine polypho 77.2 24 0.00053 34.1 9.9 33 25-67 50-82 (701)
80 PF13328 HD_4: HD domain; PDB: 69.4 2.7 5.9E-05 32.2 1.4 48 10-67 3-53 (153)
81 PF12252 SidE: Dot/Icm substra 65.0 1.7E+02 0.0037 30.0 12.8 104 22-141 276-415 (1439)
82 COG2254 Predicted HD superfami 63.7 7.1 0.00015 32.4 2.9 54 49-103 49-114 (230)
83 PF02742 Fe_dep_repr_C: Iron d 53.9 18 0.00039 23.9 3.1 20 192-211 1-23 (71)
84 PF03925 SeqA: SeqA protein; 51.2 13 0.00028 29.9 2.3 24 76-99 167-190 (190)
85 PRK11187 replication initiatio 49.6 17 0.00037 29.0 2.7 24 76-99 159-182 (182)
86 PF13735 tRNA_NucTran2_2: tRNA 46.3 45 0.00097 25.0 4.7 46 52-105 6-51 (149)
87 PF09832 DUF2059: Uncharacteri 44.3 43 0.00094 21.3 3.7 34 185-218 24-57 (64)
88 TIGR02562 cas3_yersinia CRISPR 40.8 14 0.00031 37.3 1.3 16 51-66 113-128 (1110)
89 PF07087 DUF1353: Protein of u 40.1 18 0.00038 25.7 1.4 41 53-93 45-89 (95)
90 PRK15321 putative type III sec 37.8 69 0.0015 22.9 4.0 37 171-210 14-50 (120)
91 PF13487 HD_5: HD domain; PDB: 32.1 82 0.0018 20.1 3.5 24 76-103 16-40 (64)
92 COG1353 Predicted CRISPR-assoc 30.5 26 0.00057 34.5 1.4 18 50-67 4-21 (799)
93 PRK05427 putative manganese-de 27.5 1.3E+02 0.0028 25.9 5.0 42 50-91 136-178 (308)
94 COG2238 RPS19A Ribosomal prote 26.6 83 0.0018 24.1 3.1 64 131-206 64-135 (147)
95 KOG1229 3'5'-cyclic nucleotide 23.9 1.8E+02 0.0038 26.9 5.1 47 20-66 501-549 (775)
96 PF07499 RuvA_C: RuvA, C-termi 23.6 1.7E+02 0.0038 17.4 3.8 25 77-101 5-29 (47)
97 COG3057 SeqA Negative regulato 21.7 71 0.0015 24.7 1.9 23 76-98 158-180 (181)
98 KOG3688 Cyclic GMP phosphodies 21.3 56 0.0012 29.9 1.6 52 15-66 211-264 (554)
99 TIGR03433 padR_acidobact trans 20.6 1.8E+02 0.004 20.3 3.9 24 192-215 74-97 (100)
100 PF06034 DUF919: Nucleopolyhed 20.1 1.4E+02 0.0031 19.4 2.8 31 176-212 24-61 (62)
No 1
>PRK10119 putative hydrolase; Provisional
Probab=100.00 E-value=6.7e-59 Score=381.84 Aligned_cols=204 Identities=30% Similarity=0.428 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCC-CCCCC---chH-H-
Q 027623 2 ESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDY-KYLRD---PSE-E- 75 (221)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~-~~~~~---~~~-~- 75 (221)
+.+++++++||++.|.+++++|||.|+.||+.+|..|+..++ .|.+++.+|||||||++. ++..+ +.. .
T Consensus 4 ~~~~~~~~~~v~~~l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~-----~D~~vv~lAAlLHDv~d~~k~~~~~~~~~~~~a 78 (231)
T PRK10119 4 QHWQAQFENWLKNHHQHQDAAHDICHFRRVWATAQKLAADDD-----VDMLVVLTACYFHDIVSLAKNHPQRHRSSILAA 78 (231)
T ss_pred HHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHhhcchhhhcCccccchhhHHH
Confidence 678999999999999999999999999999999999998887 799999999999999984 44332 222 3
Q ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHHhhhcccCCccCC
Q 027623 76 KIVENFLED--EGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHD 153 (221)
Q Consensus 76 ~~a~~~L~~--~g~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~~y~~~~~~~~~~ 153 (221)
..+..+|.+ .|+|++.++.|+.+|.+|||+.+. .|.++|++||||||+||+||+|||+|||.|+|.+|+++|+
T Consensus 79 ~~a~~~L~~~~~g~~~~~i~~V~~iI~~~sfs~~~-----~p~tlE~kIVQDADRLDAiGAIGIaR~f~~gG~~gr~~~d 153 (231)
T PRK10119 79 EETRRILREDFPDFPAEKIEAVCHAIEAHSFSAQI-----APLTLEAKIVQDADRLEALGAIGLARVFAVSGALGVALFD 153 (231)
T ss_pred HHHHHHHHHcccCcCHHHHHHHHHHHHHcCCCCCC-----CCCCHHHhhhhhHHHHHhcchHHHHHHHHHHHHhCCCCCC
Confidence 788999999 799999999999999999998764 5789999999999999999999999999999999999999
Q ss_pred CCCCCCCcccHHHhhhhccccHHHHHHHHHhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027623 154 PAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGK 220 (221)
Q Consensus 154 ~~~~~~~~~~~~~y~~~~~~~~i~hf~ekll~l~~~~~T~~~r~~a~~r~~~~~~f~~~~~~E~~~~ 220 (221)
|++++....+.+++ .++|+|||||||+|++.|+|++||++|++|++||++|+++|..||.|.
T Consensus 154 ~~~~~~~~~~~~~~-----~~~i~HF~eKLl~L~~~m~T~~gr~lA~~R~~~m~~Fl~~~~~E~~g~ 215 (231)
T PRK10119 154 AEDPFAQHRPLDDK-----QYALDHFQTKLLKLPQTMQTERGKQLAQHNADFLVEFMAKLSAELKGE 215 (231)
T ss_pred CCCcchhhccccCc-----hhHHHHHHHHHHhhHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 99988665555443 589999999999999999999999999999999999999999999984
No 2
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=99.95 E-value=3.4e-28 Score=199.78 Aligned_cols=192 Identities=34% Similarity=0.320 Sum_probs=157.4
Q ss_pred HHHHHhcCC-CCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCC---CchH-H-HHHHHHHhh
Q 027623 11 LVERSMKGN-DASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLR---DPSE-E-KIVENFLED 84 (221)
Q Consensus 11 ~~~~~~~~~-~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~---~~~~-~-~~a~~~L~~ 84 (221)
+....+... +++|++.|+.||+.+|..|+..+| .|++++..||||||||+..... .|.. + +++++++..
T Consensus 23 ~~~~~~~~~~~~~~~l~H~~~Va~lA~~Ia~~~g-----~D~~l~~~aaLLHDIg~~~~~~~~~~h~~~gae~a~~~~~~ 97 (222)
T COG1418 23 KLLGRLKFRTYGQHVLEHSLRVAYLAYRIAEEEG-----VDPDLALRAALLHDIGKAIDHEPGGSHAEIGAEIARKFLED 97 (222)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHhhccccccCCccchHHHHHHHHHHHccc
Confidence 333444333 678999999999999999999998 7999999999999999987443 2443 2 677777766
Q ss_pred --CCCCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHHhhhcccCCccCCCCCCCCCcc
Q 027623 85 --EGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDV 162 (221)
Q Consensus 85 --~g~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~~y~~~~~~~~~~~~~~~~~~~ 162 (221)
.+++...++.++++|..|++..... ...+.++++++++|+|+||++|++|++|||.|.| +++.|++..+.....
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~s~~~~~~--d~~~a~~~g~~~~dad~l~~~~~~~~~~~~~~~G--~~~~y~~~~~~~~~~ 173 (222)
T COG1418 98 PVVINAIEAHHGVEEIISRHSFLVAAA--DALSAARPGARLQDADRLDARGAIGEARVFLFEG--VEKAYAIQAGRELRR 173 (222)
T ss_pred ccccchHHHhccccchhhHHHHHhhhh--hcccccCCccccccHHHHHHHHHHHHHHHHHhcc--chhhcccccchhhhh
Confidence 5677888999999999999876531 1267889999999999999999999999999999 778898866532221
Q ss_pred cHHHhhhhccccHHHHHHHHHhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027623 163 SKEQYMKKEEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWDGK 220 (221)
Q Consensus 163 ~~~~y~~~~~~~~i~hf~ekll~l~~~~~T~~~r~~a~~r~~~~~~f~~~~~~E~~~~ 220 (221)
. -+...++||.+|+++++..++|++++ +++|.++|..|+.++..|+.+.
T Consensus 174 ~-------v~~~~i~~~~~~~l~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~ 222 (222)
T COG1418 174 I-------VEDKKLDHFQEKLLKLKISKKTEEAK--AEYPGKIKVTVIRELRAEEYAK 222 (222)
T ss_pred c-------cChhhhhhHHHHHhccHHHHHHHHHh--hhcchHHHHHHHHHHHHHhccC
Confidence 1 12234999999999999999999999 9999999999999999999763
No 3
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=99.85 E-value=9.5e-21 Score=156.13 Aligned_cols=123 Identities=20% Similarity=0.182 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCC-CCCC----chH-H
Q 027623 2 ESRVRKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYK-YLRD----PSE-E 75 (221)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~-~~~~----~~~-~ 75 (221)
.+++.++.+|+++.+ +.|++.|+.||+.+|..|++.+.. ....|.+++.+||||||||+.+ +... ++. +
T Consensus 38 t~l~~~a~~~~~~~l----~~~~~~Hs~RV~~~a~~ia~~e~~-~~~~D~evl~lAALLHDIG~~~~~~~~~~~~fe~~g 112 (228)
T TIGR03401 38 TPLVKFAQEYAKARL----PPETYNHSLRVYYYGLAIARDQFP-EWDLSDETWFLTCLLHDIGTTDENMTATKMSFEFYG 112 (228)
T ss_pred hHHHHHHHHHHHhhC----CHhhhHHHHHHHHHHHHHHHHhcc-ccCCCHHHHHHHHHHHhhccccccCCcccCCHHHHH
Confidence 467889999999987 469999999999999999986510 0137999999999999999964 3221 122 3
Q ss_pred -HHHHHHHhhC-CCCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhh
Q 027623 76 -KIVENFLEDE-GLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGA 134 (221)
Q Consensus 76 -~~a~~~L~~~-g~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa 134 (221)
..|+++|.+. |++++.++.|+++|..|+++.+. .+.+++++||++||+||++|+
T Consensus 113 a~~A~~~L~~~~G~~~~~~~~V~~aI~~H~~~~~~-----~~~~~e~~lvq~Ad~lDa~Ga 168 (228)
T TIGR03401 113 GILALDVLKEQTGANQDQAEAVAEAIIRHQDLGVD-----GTITTLGQLLQLATIFDNVGA 168 (228)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCCCCC-----CCcCHHHHHHHHHHHHhHccC
Confidence 7899999999 99999999999999999887642 456899999999999999987
No 4
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=99.48 E-value=3e-13 Score=116.84 Aligned_cols=112 Identities=23% Similarity=0.213 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCC-CchHHHHHHHHHhh
Q 027623 6 RKAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLR-DPSEEKIVENFLED 84 (221)
Q Consensus 6 ~~~~~~~~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~-~~~~~~~a~~~L~~ 84 (221)
+.+.++++++- .+.+.+.|+.||+.+|..|+..++ .|.+++.+||||||||+.+... +|. ..+.++|++
T Consensus 173 ee~l~Ll~k~~---~~e~l~~Hs~rVa~lA~~LA~~~~-----~D~~ll~aAALLHDIGK~k~~~~~H~--~~Ga~iL~e 242 (339)
T PRK12703 173 DQCLDLLKKYG---ASDLLIRHVKTVYKLAMRIADCIN-----ADRRLVAAGALLHDIGRTKTNGIDHA--VAGAEILRK 242 (339)
T ss_pred HHHHHHHHHcC---CChHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHhcccccccCCCHH--HHHHHHHHH
Confidence 34445555542 345689999999999999999987 6899999999999999987532 343 677889999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCc---------ccccccCCCCChhhhhhhhhhhhhh
Q 027623 85 EGLEESKKMRILNIIKKMGFKD---------EIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 85 ~g~~~~~~~~V~~~I~~h~~~~---------~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
.|+++. +..+|.+|.... +.......|.++|++||++||+|+.
T Consensus 243 ~G~~e~----i~~iIe~H~g~G~~~~~~~~~gL~~~~~~P~TLEakIV~dADrL~~ 294 (339)
T PRK12703 243 ENIDDR----VVSIVERHIGAGITSEEAQKLGLPVKDYVPETIEEMIVAHADNLFA 294 (339)
T ss_pred CCCCHH----HHHHHHHHhccCCCcchhhccCCccccCCCCCHHHHHHHHHHHHhc
Confidence 999974 666777765211 0100112577899999999999864
No 5
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=99.44 E-value=5.7e-12 Score=99.26 Aligned_cols=105 Identities=24% Similarity=0.194 Sum_probs=77.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCC-CchHHHHHHHHHhhCCCCHHHHHHHHHH
Q 027623 20 DASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLR-DPSEEKIVENFLEDEGLEESKKMRILNI 98 (221)
Q Consensus 20 ~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~-~~~~~~~a~~~L~~~g~~~~~~~~V~~~ 98 (221)
.+.+.+.|+.+|+.+|..|+...+......|.+++.+||||||||+..... +|. ..+.++|++.|+|+ .+..+
T Consensus 10 ~~~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~--~~G~~iL~~~g~~~----~i~~i 83 (164)
T TIGR00295 10 CDESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHF--VKGAEILRKEGVDE----KIVRI 83 (164)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHH--HHHHHHHHHcCCCH----HHHHH
Confidence 367899999999999999999875211236899999999999999976432 333 67788999999985 45567
Q ss_pred HHHhcCCccc---------ccccCCCCChhhhhhhhhhhhh
Q 027623 99 IKKMGFKDEI---------AGLANAEFSPEFGVVQDADRLD 130 (221)
Q Consensus 99 I~~h~~~~~~---------~~~~~~~~~~ea~il~DAD~LD 130 (221)
|..|..+... ......|.+++++||++||+|-
T Consensus 84 I~~H~~~g~p~~~~~~~~l~~~~~~p~t~ea~IV~~AD~l~ 124 (164)
T TIGR00295 84 AERHFGAGINAEEASKLGLPPKDYMPETLEEKIVAHADNLI 124 (164)
T ss_pred HHHHhCCCCchhhHhhcCCCcccCCCCCHHHHHHHHHHHhc
Confidence 7788644211 0001136789999999999974
No 6
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.42 E-value=3.3e-12 Score=98.22 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=119.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhhCCCCHHHHHHHHHH
Q 027623 21 ASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLEDEGLEESKKMRILNI 98 (221)
Q Consensus 21 ~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~~g~~~~~~~~V~~~ 98 (221)
.-|.+.|+..|++.+..+.... .|+..|++|+||||+.+..-.++++.. ..+...|.+.|.| +.+..|..+
T Consensus 38 HYH~l~HI~a~L~~~~~~r~la------~dp~~VElA~WfHD~iYDtqaqDNEa~Saa~a~~~L~s~g~p-~~~~~v~~l 110 (208)
T COG4339 38 HYHTLKHISAVLQTIQTLRTLA------QDPPGVELAAWFHDVIYDTQAQDNEAKSAAYAGAALQSLGIP-SCITKVKRL 110 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHh------cCCchhHHHHHHHHHHhhhhccccHHHhHHHHHHHHHhCCCh-HHHHHHHHH
Confidence 4499999999999998887555 578899999999999998767777765 7888999999999 677788888
Q ss_pred HHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHHhhhcccCCccCCCCCCCCCcccHHHhhhhccccHHHH
Q 027623 99 IKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNH 178 (221)
Q Consensus 99 I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~~y~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~h 178 (221)
|....... .+|....++++-|+|. ..||+-. .-+-.|....+++ | .+++...| +.++..+++.
T Consensus 111 IlaT~~HQ------appdDaDa~l~lD~DL-aILaa~~-~~y~~Ye~avR~E-Y-------aWV~Ep~~-raGRg~vL~~ 173 (208)
T COG4339 111 ILATKHHQ------APPDDADAQLLLDADL-AILAANR-VDYQEYEHAVRQE-Y-------AWVSEPDY-RAGRGRVLEK 173 (208)
T ss_pred HHHHhccc------CCCccccHHHHhhccH-HHHcCCc-hhHHHHHHHHHHH-h-------cccccHHH-HhchhHHHHH
Confidence 87654221 2456778999999994 6776633 3345577666666 3 34555667 6788888865
Q ss_pred HHHHHhcchhhcCCHHHHHHHHHHHHH
Q 027623 179 FHEKLLKLKDLMKTEAGQRRAEKRHKF 205 (221)
Q Consensus 179 f~ekll~l~~~~~T~~~r~~a~~r~~~ 205 (221)
|++ -|..++|+..|+.+++-++-
T Consensus 174 fL~----rpriyhte~~rqr~E~~ARa 196 (208)
T COG4339 174 FLQ----RPRIYHTELMRQRGEESARA 196 (208)
T ss_pred HHh----cchhhccHHHHHHhHHHHHH
Confidence 544 48999999999999987653
No 7
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=99.37 E-value=9.2e-13 Score=97.01 Aligned_cols=102 Identities=35% Similarity=0.379 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCC-------------CchH-H-HHHHHHHhhCCCCH
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLR-------------DPSE-E-KIVENFLEDEGLEE 89 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~-------------~~~~-~-~~a~~~L~~~g~~~ 89 (221)
++|+.+|+.+|..|+...+. +.+.+++.+||||||||+..... .|+. + .++.+++...+.+
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~---~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~~~~~~~~- 77 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGL---EEDRELLRIAALLHDIGKIPTPDFIEKKPEERGKFYRHEEIGAEILKEFLKELGLP- 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTH---HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHC-
T ss_pred hhHHHHHHHHHHHHHHHcCC---chhHHHHHHHHHHHhcCCCCCchHHHHhHhhhchhhhhHHHHHHHHHHhhhhcchH-
Confidence 68999999999999998762 25899999999999999986432 1221 1 5666777666666
Q ss_pred HHHHHHHHHHHHhcCCcccc----cccCCCCChhhhhhhhhhhhhhh
Q 027623 90 SKKMRILNIIKKMGFKDEIA----GLANAEFSPEFGVVQDADRLDAI 132 (221)
Q Consensus 90 ~~~~~V~~~I~~h~~~~~~~----~~~~~~~~~ea~il~DAD~LD~l 132 (221)
++.|+.+|..|....... .....+.+++++||.+||+||++
T Consensus 78 --~~~i~~~i~~H~~~~~~~~~~~~~~~~~~~~~~~iv~~aD~l~a~ 122 (122)
T PF01966_consen 78 --IEIIANAIRYHHGPWNGEGKPKEEDYEPISLEARIVKLADRLDAM 122 (122)
T ss_dssp --HHHHHHHHHHTTTHHTSHHCHHCHSCSTSSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcccccccccccccCCCCCCHHHHHHHHHHHHhCC
Confidence 889999999997643210 01235788999999999999974
No 8
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=99.27 E-value=5.3e-11 Score=102.54 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCC---------CC-----chH-H-HHHHHHHhhCCCC
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYL---------RD-----PSE-E-KIVENFLEDEGLE 88 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~---------~~-----~~~-~-~~a~~~L~~~g~~ 88 (221)
++|+..|++.|..++..+.. .|.+++.++|+|||||+.... .. |-. + .+..+.+++++++
T Consensus 161 leHtl~v~~~~~~l~~~y~~----~n~dll~agalLHDiGKi~E~~~~~~~~yT~eG~LlGHi~lg~~~i~~~~~~l~~~ 236 (314)
T PRK13480 161 AYHVVSMLRLAKSICDLYPS----LNKDLLYAGIILHDLGKVIELSGPVSTTYTLEGNLLGHISIMVNEIAKAADELQID 236 (314)
T ss_pred HHHHHHHHHHHHHHHHhccc----cCHHHHHHHHHHHHhhhHHHhcCCCccCccccCEeccHHHHHHHHHHHHHHHcCCC
Confidence 58999999999999998763 799999999999999996321 11 111 2 5667777788999
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhh
Q 027623 89 ESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 89 ~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
++....+.++|.+|+...+.++ +..|.++||.+|.-+|.||+
T Consensus 237 ~e~~~~L~H~ILSHHG~~E~GS-Pv~P~t~EA~iLh~~D~lDA 278 (314)
T PRK13480 237 GEEVLILQHMVLSHHGKAEWGS-PKPPLVKEAEILHYIDNIDA 278 (314)
T ss_pred HHHHHHHHhhhhccCCccccCC-CCCCCCHHHHHHHHHHhhhh
Confidence 9888889999999987655432 45799999999999999997
No 9
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.21 E-value=1.4e-10 Score=112.64 Aligned_cols=121 Identities=25% Similarity=0.169 Sum_probs=91.6
Q ss_pred CCCCCCh---HHHHHHHHHHHHHHHHhCCC---------CCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhh
Q 027623 19 NDASHDA---SHVWRVRDLALSLAREEGLA---------SNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLED 84 (221)
Q Consensus 19 ~~~~H~~---~H~~rV~~~a~~ia~~~~~~---------~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~ 84 (221)
++..|.+ .|+.+|+..+..++..+... ....++.++.+||||||||+.. ..+|++. ++|++++++
T Consensus 454 ~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGKg~-~~dHs~~Ga~~a~~il~r 532 (884)
T PRK05007 454 FDLFHAYTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAKGR-GGDHSILGAQDALEFAEL 532 (884)
T ss_pred cCccccCcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcCCC-CCChHHHHHHHHHHHHHH
Confidence 4566776 89999999999887543210 0113678999999999999986 4467754 899999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcccccccC--CCC--ChhhhhhhhhhhhhhhhhhHHHHH
Q 027623 85 EGLEESKKMRILNIIKKMGFKDEIAGLAN--AEF--SPEFGVVQDADRLDAIGAIGIARC 140 (221)
Q Consensus 85 ~g~~~~~~~~V~~~I~~h~~~~~~~~~~~--~~~--~~ea~il~DAD~LD~lGa~gi~R~ 140 (221)
+|+|+..++.|+.+|.+|.......+..+ +|. ..++++|+|+|+||.|..+.++-.
T Consensus 533 l~l~~~~~~~v~~LV~~Hl~~~~~a~rrdi~d~~~i~~~a~~v~~~~~L~~L~~Lt~AD~ 592 (884)
T PRK05007 533 HGLNSRETQLVAWLVRNHLLMSVTAQRRDIQDPDVIKQFAEEVQDENRLRYLVCLTVADI 592 (884)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhHHHhccCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence 99999999999999999976543221111 222 257999999999999988776654
No 10
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=99.08 E-value=1.4e-09 Score=79.29 Aligned_cols=108 Identities=31% Similarity=0.302 Sum_probs=81.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCC--------chHHHHHHHHHhhCCCCHHHH
Q 027623 21 ASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRD--------PSEEKIVENFLEDEGLEESKK 92 (221)
Q Consensus 21 ~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~--------~~~~~~a~~~L~~~g~~~~~~ 92 (221)
+.+.++|+.+|+.++..+++..+. .+.+.+.+||||||||+...... ......+..+++..++++...
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~----~~~~~~~~a~LlHDig~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~ 77 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGL----LDIELLLLAALLHDIGKPGTPDSFLVKTSVLEDHHFIGAEILLEEEEPRILE 77 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCh----HHHHHHHHHHHHHcccCccCCHHHhcCccHHHHhHHHHHHHHHhCCCCHHHH
Confidence 356789999999999999988872 37789999999999999864321 111166777777789999888
Q ss_pred HHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhh
Q 027623 93 MRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGA 134 (221)
Q Consensus 93 ~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa 134 (221)
..+..+|..|...... ....+..+.++++..||++|....
T Consensus 78 ~~~~~~i~~h~~~~~~--~~~~~~~~~~~il~~aD~~~~~~~ 117 (124)
T smart00471 78 EILATAILSHHERPDG--LRGEPITLEARIVKVADRLDALRR 117 (124)
T ss_pred HHHhhHHHHhccccCC--CCCCcCCHHHHHHHHHHHHHHHhc
Confidence 8777789999765421 011356789999999999997543
No 11
>PRK12704 phosphodiesterase; Provisional
Probab=99.08 E-value=1.5e-09 Score=99.62 Aligned_cols=93 Identities=25% Similarity=0.198 Sum_probs=76.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCC---CCchHHHHHHHHHhhCCCCHHHHHHHHH
Q 027623 21 ASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYL---RDPSEEKIVENFLEDEGLEESKKMRILN 97 (221)
Q Consensus 21 ~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~---~~~~~~~~a~~~L~~~g~~~~~~~~V~~ 97 (221)
+..-|.|+.+|+.+|..||...| .|++.+..||||||||+.... .+|. ..+..+|+.+++|+ .|++
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lg-----ld~~~a~~AgLLHDIGK~~~~e~~~~H~--~iGa~il~~~~~~~----~v~~ 401 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELG-----LDVKLAKRAGLLHDIGKALDHEVEGSHV--EIGAELAKKYKESP----VVIN 401 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhC-----cCHHHHHHHHHHHccCcCccccccCCHH--HHHHHHHHHcCCCH----HHHH
Confidence 34467999999999999999988 588999999999999997421 2233 78888999888874 6889
Q ss_pred HHHHhcCCcccccccCCCCChhhhhhhhhhhhhh
Q 027623 98 IIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 98 ~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
+|.+|+... .|.++++.||+.||.|++
T Consensus 402 aI~~HHe~~-------~~~~~~a~IV~~ADaLsa 428 (520)
T PRK12704 402 AIAAHHGDE-------EPTSIEAVLVAAADAISA 428 (520)
T ss_pred HHHHcCCCC-------CCCCHHHHHHHHHHHHhC
Confidence 999998532 467899999999998774
No 12
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6e-10 Score=104.37 Aligned_cols=125 Identities=25% Similarity=0.189 Sum_probs=96.4
Q ss_pred CCCCCCh---HHHHHHHHHHHHHHHHhCCC---------CCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhh
Q 027623 19 NDASHDA---SHVWRVRDLALSLAREEGLA---------SNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLED 84 (221)
Q Consensus 19 ~~~~H~~---~H~~rV~~~a~~ia~~~~~~---------~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~ 84 (221)
.|..|-+ +|+.||+..+..++..+... ..-.+++++++|||||||||.. ..+|+.. ..|+.|..+
T Consensus 439 fdlfH~YTVDeH~lr~v~~l~~~a~~~~~~~hPl~~~l~~~~~~~elLylAaLfHDIaKGR-ggDHs~lGA~~a~~fc~~ 517 (867)
T COG2844 439 FDLFHIYTVDEHTLRVVLKLARFARGEARHEHPLASQLMPRLEKRELLYLAALFHDIAKGR-GGDHSILGAEDARRFCER 517 (867)
T ss_pred cCcceecchhHHHHHHHHHHHHhhcccccccCccHHhhccCCCChhHHHHHHHHHHhhcCC-CCchHHhhHHHHHHHHHH
Confidence 4556666 79999999999998765421 0113779999999999999985 5677764 999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcccccc--cCCCCC--hhhhhhhhhhhhhhhhhhHHHHHHhhh
Q 027623 85 EGLEESKKMRILNIIKKMGFKDEIAGL--ANAEFS--PEFGVVQDADRLDAIGAIGIARCFTFG 144 (221)
Q Consensus 85 ~g~~~~~~~~V~~~I~~h~~~~~~~~~--~~~~~~--~ea~il~DAD~LD~lGa~gi~R~~~y~ 144 (221)
+|++..+++.|.++|++|-..+...+. ..+|.+ -+++.|+|-.+|++|-.++++-....+
T Consensus 518 hGL~~~e~~lvaWLVe~HLlMS~tAQrrDl~Dp~vI~~Fa~~Vq~~~rL~~L~~LTVaDI~Atg 581 (867)
T COG2844 518 HGLNSRETELVAWLVENHLLMSVTAQRRDLNDPKVIDAFAEAVQDEERLRYLLVLTVADIRATG 581 (867)
T ss_pred cCCCHHHhHHHHHHHHHHHHhHHHHHhcCCCChHHHHHHHHHhcCHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999543222221 124555 369999999999999888887765544
No 13
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=99.04 E-value=6.7e-10 Score=87.97 Aligned_cols=106 Identities=21% Similarity=0.256 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCC-----------CCCCch--
Q 027623 7 KAEKLVERSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYK-----------YLRDPS-- 73 (221)
Q Consensus 7 ~~~~~~~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~-----------~~~~~~-- 73 (221)
.+..++++.+ +.++++|+++|.+.|..+|+.++ .|++.+.+||++||+++.- +.....
T Consensus 5 ~l~~~~~~~l----~~kR~~H~l~V~~~A~~LA~~y~-----~d~~kA~~AgilHD~aK~~p~~~~~~~~~~~~~~~~~~ 75 (187)
T COG1713 5 ELLAIVKELL----SEKRFEHCLGVAETAIELAEAYG-----LDPEKAYLAGILHDIAKELPEQKLLKIAKKYGLELDLE 75 (187)
T ss_pred HHHHHHHHhc----CHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHhhCCHHHHHHHHHHhCCCchhh
Confidence 4556666666 46799999999999999999998 7999999999999999851 101111
Q ss_pred ----H---HHHHHHHHhh-CCCCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhh
Q 027623 74 ----E---EKIVENFLED-EGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 74 ----~---~~~a~~~L~~-~g~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
. +..+.-++++ .|+..+ .|..+|+.|+... ...+...+||.-||++..
T Consensus 76 ~~~~~llH~~vgay~~~~~fGi~De---~VL~AI~~HTtg~-------~~mt~ldkIiyiAD~iEp 131 (187)
T COG1713 76 RESPLLLHGKVGAYLLKEEFGIKDE---EVLSAIEYHTTGR-------KQMTLLDKILYVADKIEP 131 (187)
T ss_pred ccChHHHHHHHHHHHHHHHhCCCcH---HHHHHHHHhccCC-------CccchhhheeeeeccccC
Confidence 1 1566667765 799886 7899999997643 456888999999999863
No 14
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=99.02 E-value=2.7e-09 Score=97.83 Aligned_cols=91 Identities=26% Similarity=0.212 Sum_probs=75.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCC---CCCchHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKY---LRDPSEEKIVENFLEDEGLEESKKMRILNII 99 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~---~~~~~~~~~a~~~L~~~g~~~~~~~~V~~~I 99 (221)
..|.|+.+|+.+|..||...| .|++.+.+||||||||+... ..+|. ..+..+|+.+++|+ .|+++|
T Consensus 329 ~~l~Hs~~VA~lA~~LA~~lg-----ld~~~a~~AGLLHDIGK~~~~e~~~~H~--~~Ga~ll~~~~~~~----~V~~aI 397 (514)
T TIGR03319 329 NVLQHSIEVAHLAGIMAAELG-----EDVKLAKRAGLLHDIGKAVDHEVEGSHV--EIGAELAKKYKESP----EVVNAI 397 (514)
T ss_pred cHHHHHHHHHHHHHHHHHHhC-----cCHHHHHHHHHHHhcCcccchhhcccHH--HHHHHHHHHcCCCH----HHHHHH
Confidence 358999999999999999998 58899999999999999732 12233 78889999999885 688999
Q ss_pred HHhcCCcccccccCCCCChhhhhhhhhhhhhh
Q 027623 100 KKMGFKDEIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 100 ~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
.+|+... .|.++++.||+.||.|++
T Consensus 398 ~~HH~~~-------~~~~~~a~IV~~AD~lsa 422 (514)
T TIGR03319 398 AAHHGDV-------EPTSIEAVLVAAADALSA 422 (514)
T ss_pred HHhCCCC-------CCCCHHHHHHHHHHHhcC
Confidence 9998642 467899999999999885
No 15
>PRK12705 hypothetical protein; Provisional
Probab=98.96 E-value=3.8e-09 Score=96.12 Aligned_cols=91 Identities=27% Similarity=0.185 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCC---CCchHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYL---RDPSEEKIVENFLEDEGLEESKKMRILNII 99 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~---~~~~~~~~a~~~L~~~g~~~~~~~~V~~~I 99 (221)
..|.|+.+|+.+|..||...| .|++.+..||||||||+.... .+|. ..+.++++++++|+ .|..+|
T Consensus 323 nvl~HSl~VA~lA~~LA~~lG-----ld~d~a~~AGLLHDIGK~ie~e~~~~H~--~iGaeLlkk~~~p~----~Vv~aI 391 (508)
T PRK12705 323 NVLSHSLEVAHLAGIIAAEIG-----LDPALAKRAGLLHDIGKSIDRESDGNHV--EIGAELARKFNEPD----EVINAI 391 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHcC-----cCHHHHHHHHHHHHcCCcchhhhcccHH--HHHHHHHHhcCCCH----HHHHHH
Confidence 357899999999999999998 688999999999999997421 2232 78899999999997 477899
Q ss_pred HHhcCCcccccccCCCCChhhhhhhhhhhhhh
Q 027623 100 KKMGFKDEIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 100 ~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
..|+.+. .+.+++++||+.||.|++
T Consensus 392 ~~HHe~~-------~~~~~~a~IVaiADaLSa 416 (508)
T PRK12705 392 ASHHNKV-------NPETVYSVLVQIADALSA 416 (508)
T ss_pred HHhCCCC-------CCCCHHHHHHHHHHHHcC
Confidence 9997543 456789999999998765
No 16
>PRK00106 hypothetical protein; Provisional
Probab=98.96 E-value=9e-09 Score=94.24 Aligned_cols=91 Identities=24% Similarity=0.166 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCC---CCCchHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKY---LRDPSEEKIVENFLEDEGLEESKKMRILNII 99 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~---~~~~~~~~~a~~~L~~~g~~~~~~~~V~~~I 99 (221)
..|.|+..|+.+|..||...| .|++.+.+|+||||||+... ..+|. ..+..+++.+++|+ .|+++|
T Consensus 350 nl~~HSv~VA~lA~~lA~~lg-----ld~e~a~~AGLLHDIGK~v~~e~~g~Ha--~iGa~ll~~~~~~~----~v~~aI 418 (535)
T PRK00106 350 NVLRHSVEVGKLAGILAGELG-----ENVALARRAGFLHDMGKAIDREVEGSHV--EIGMEFARKYKEHP----VVVNTI 418 (535)
T ss_pred cHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhccCccCccccCChH--HHHHHHHHHcCCCH----HHHHHH
Confidence 469999999999999999998 58999999999999999731 22333 78899999999887 478999
Q ss_pred HHhcCCcccccccCCCCChhhhhhhhhhhhhh
Q 027623 100 KKMGFKDEIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 100 ~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
.+|+... .+.++++.||+-||.|.+
T Consensus 419 ~~HH~~~-------~~~s~~a~IV~~AD~lsa 443 (535)
T PRK00106 419 ASHHGDV-------EPESVIAVIVAAADALSS 443 (535)
T ss_pred HHhCCCC-------CCCChHHHHHHHHHHhcc
Confidence 9997633 456899999999999864
No 17
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=98.94 E-value=6.3e-09 Score=81.41 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=72.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCC-----------CC-ch--------HHHHHHH
Q 027623 21 ASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYL-----------RD-PS--------EEKIVEN 80 (221)
Q Consensus 21 ~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~-----------~~-~~--------~~~~a~~ 80 (221)
..+.|.|+.+|+..|..||+..+ .|++.+.+|+||||||+.... .+ .. +...+..
T Consensus 6 ~~~r~~Hsl~Va~~a~~lA~~~~-----~d~e~a~~AGLLHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~vGa~ 80 (158)
T TIGR00488 6 DEHRYQHCLGVGQTAKQLAEANK-----LDSKKAEIAGAYHDLAKFLPKEQLKQIAKREKMPAHLLYPSPKLLHAYVGAY 80 (158)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhC-----cCHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCchhhcccccccHHHHHHH
Confidence 35789999999999999999887 688999999999999984210 00 00 1267888
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhh
Q 027623 81 FLEDE-GLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 81 ~L~~~-g~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
++++. +++++ .|+.+|..|..+. .+.+.+++||.-||.++.
T Consensus 81 ll~~w~~~~~~---~i~~aI~~H~~~~-------~~~~~l~~iV~lAD~i~~ 122 (158)
T TIGR00488 81 ILKREFGVQDE---DILDAIRNHTSGP-------PGMSLLDMIIYVADKLEP 122 (158)
T ss_pred HHHHHhCCCcH---HHHHHHHHhCCCC-------CCCCHHHHHHHhHHHHhh
Confidence 88775 57443 6888999997532 344678999999999875
No 18
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.92 E-value=4.6e-09 Score=101.82 Aligned_cols=117 Identities=21% Similarity=0.143 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCC---------CCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhhCCCCHHHHH
Q 027623 25 ASHVWRVRDLALSLAREEGLA---------SNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLEDEGLEESKKM 93 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~---------~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~~g~~~~~~~ 93 (221)
+.|+.+|++.+..+...+... ..-..++++.+||||||||+... .+|++. .+|+++++++|+|++.++
T Consensus 442 d~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGKg~~-~~Hs~~GA~~A~~il~rl~l~~~~~~ 520 (856)
T PRK03059 442 DQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAKGRG-GDHSTLGAVDARRFCRQHGLAREDAE 520 (856)
T ss_pred hHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhccCCC-CCchHHHHHHHHHHHHHcCCCHHHHH
Confidence 579999999988775443210 01124789999999999999864 467654 899999999999999999
Q ss_pred HHHHHHHHhcCCccccccc--CCCCC--hhhhhhhhhhhhhhhhhhHHHHHHh
Q 027623 94 RILNIIKKMGFKDEIAGLA--NAEFS--PEFGVVQDADRLDAIGAIGIARCFT 142 (221)
Q Consensus 94 ~V~~~I~~h~~~~~~~~~~--~~~~~--~ea~il~DAD~LD~lGa~gi~R~~~ 142 (221)
.|+++|.+|.......+.. .+|.. ..+..|.+.++|+.|..+.++....
T Consensus 521 ~V~~LV~~Hl~~~~~aqrrDi~d~~~i~~fa~~v~~~~~L~~L~lLt~AD~~a 573 (856)
T PRK03059 521 LVVWLVEHHLTMSQVAQKQDLSDPEVIARFAELVGDERRLTALYLLTVADIRG 573 (856)
T ss_pred HHHHHHHHhchHhHHHhhcCCCCHHHHHHHHHHhCCHHHHHHHHhHHHHhhhc
Confidence 9999999997544321111 12332 3588888988999998877766543
No 19
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.88 E-value=7.5e-09 Score=100.59 Aligned_cols=124 Identities=23% Similarity=0.184 Sum_probs=89.0
Q ss_pred CCCCCh---HHHHHHHHHHHHHHHHhCCC---------CCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhhC
Q 027623 20 DASHDA---SHVWRVRDLALSLAREEGLA---------SNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLEDE 85 (221)
Q Consensus 20 ~~~H~~---~H~~rV~~~a~~ia~~~~~~---------~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~~ 85 (221)
+..|.+ .|+.+|++.+..+....... ....++.++.+||||||||+.. ..+|++. .+++.+++++
T Consensus 422 ~~~H~~tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDiGKg~-~~~H~~~Ga~~a~~~~~rl 500 (850)
T TIGR01693 422 DLFHVYTVDEHTLRTVVHLAPFARGRLAREHPLASELMPKIEDPELLYLAALLHDIGKGR-GGDHSVLGAEDARDVCPRL 500 (850)
T ss_pred CceeecchhHHHHHHHHHHHHHhccccccccccHHHHHhccCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHc
Confidence 344554 79999999998876432100 0113578999999999999975 3567654 8999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCccccccc--CCCCCh--hhhhhhhhhhhhhhhhhHHHHHHhhh
Q 027623 86 GLEESKKMRILNIIKKMGFKDEIAGLA--NAEFSP--EFGVVQDADRLDAIGAIGIARCFTFG 144 (221)
Q Consensus 86 g~~~~~~~~V~~~I~~h~~~~~~~~~~--~~~~~~--ea~il~DAD~LD~lGa~gi~R~~~y~ 144 (221)
|+|.+.++.|+.+|.+|.......+.. ..|.++ .+..|.+.++|+.|..++++.....+
T Consensus 501 ~l~~~~~~~v~~LV~~Hl~~~~~aqr~d~~d~~~i~~f~~~v~~~~~L~~L~~Lt~AD~~a~~ 563 (850)
T TIGR01693 501 GLDRPDTELVAWLVRNHLLMSITAQRRDLNDPKTVFAFAEAVGDPERLEYLLALTVADIRATG 563 (850)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHhcCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccC
Confidence 999999999999999996433211111 123333 37788899999999998888765444
No 20
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.84 E-value=9.7e-09 Score=100.60 Aligned_cols=121 Identities=19% Similarity=0.186 Sum_probs=87.2
Q ss_pred CCCCCh---HHHHHHHHHHHHHHHHhCCC---------CCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhhC
Q 027623 20 DASHDA---SHVWRVRDLALSLAREEGLA---------SNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLEDE 85 (221)
Q Consensus 20 ~~~H~~---~H~~rV~~~a~~ia~~~~~~---------~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~~ 85 (221)
+..|.+ .|+.+|+..+..+...+... ..-.+++++.+||||||||+... .+|++. .+|+.+++++
T Consensus 487 d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGKg~~-~dHs~~Ga~~a~~~~~rl 565 (931)
T PRK05092 487 NMYHHYTVDEHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHDIAKGRP-EDHSIAGARIARRLCPRL 565 (931)
T ss_pred ccceeccHhHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHc
Confidence 445654 79999999988876432100 01135789999999999999863 567654 8999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCccccccc--CCCCCh--hhhhhhhhhhhhhhhhhHHHHHH
Q 027623 86 GLEESKKMRILNIIKKMGFKDEIAGLA--NAEFSP--EFGVVQDADRLDAIGAIGIARCF 141 (221)
Q Consensus 86 g~~~~~~~~V~~~I~~h~~~~~~~~~~--~~~~~~--ea~il~DAD~LD~lGa~gi~R~~ 141 (221)
|+|.+.++.|+++|.+|.......+.. .+|.++ ++..|.+.++|+.|..+.++...
T Consensus 566 ~l~~~~~~~v~~LV~~Hl~ms~~a~rrDi~d~~~i~~fa~~v~~~~~L~~L~~Lt~ADi~ 625 (931)
T PRK05092 566 GLSPAETETVAWLVEHHLLMSDTAQKRDLSDPKTIEDFADAVQSPERLKLLLILTVADIR 625 (931)
T ss_pred CCCHHHHHHHHHHHHHHhHHhHHHHcccCCCHHHHHHHHHHhCCHhHhhHHHHHHHHhhc
Confidence 999999999999999996433211110 123333 47888999999999887766543
No 21
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=98.82 E-value=8.2e-09 Score=90.46 Aligned_cols=96 Identities=25% Similarity=0.266 Sum_probs=73.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCC-----------Cch-------HHHHHHHHH
Q 027623 21 ASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLR-----------DPS-------EEKIVENFL 82 (221)
Q Consensus 21 ~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~-----------~~~-------~~~~a~~~L 82 (221)
+...|.|+.+|+..|..||+..+ .|++.+.+||||||||+..... +.+ +...+..+|
T Consensus 194 ~~~~~~HSl~VA~~A~~LA~~~g-----~d~~~a~~AGLLHDIGK~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~Ga~ll 268 (342)
T PRK07152 194 DEYRYKHCLRVAQLAAELAKKNN-----LDPKKAYYAGLYHDITKEWDEEKHRKFLKKYLKDVKNLPWYVLHQYVGALWL 268 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-----cCHHHHHHHHHHHHhhccCCHHHHHHHHHhcCCchhhcchHHHhHHHHHHHH
Confidence 34689999999999999999988 5679999999999999953110 011 126788888
Q ss_pred hhC-CCCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhh
Q 027623 83 EDE-GLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 83 ~~~-g~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
++. ++|.+ .|+.+|..|.... .+.+++++||.-||.++.
T Consensus 269 ~~~~~~p~~---~i~~aI~~Hh~~~-------~~~~~l~~iV~lAD~l~~ 308 (342)
T PRK07152 269 KHVYGIDDE---EILNAIRNHTSLA-------EEMSTLDKIVYVADKIEP 308 (342)
T ss_pred HHHcCCCcH---HHHHHHHhccCCC-------CCcCHHHHHHHhhhhccc
Confidence 775 88753 4788999987532 245788999999999874
No 22
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=98.79 E-value=4.4e-08 Score=66.89 Aligned_cols=72 Identities=29% Similarity=0.317 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCc---hHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDP---SEEKIVENFLEDEGLEESKKMRILNII 99 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~---~~~~~a~~~L~~~g~~~~~~~~V~~~I 99 (221)
-.+.|+.+|+.+|..+++..+ .|.+.+.+||||||||+....... .....+..+|++.+++. .+..+|
T Consensus 4 ~~~~H~~~v~~~a~~la~~~~-----~~~~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~~~l~~~~~~~----~~~~~I 74 (80)
T TIGR00277 4 NVLQHSLEVAKLAEALARELG-----LDVELARRGALLHDIGKPITREGVIFESHAVVGAEIARKYGEPL----EVIDII 74 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHccCCcccchHHHHHchHHHHHHHHHHcCCCH----HHHHHH
Confidence 358999999999999999887 577889999999999997532210 11167888898888886 566788
Q ss_pred HHhc
Q 027623 100 KKMG 103 (221)
Q Consensus 100 ~~h~ 103 (221)
..|.
T Consensus 75 ~~Hh 78 (80)
T TIGR00277 75 AEHH 78 (80)
T ss_pred HHHc
Confidence 8774
No 23
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.75 E-value=3.7e-08 Score=95.59 Aligned_cols=116 Identities=21% Similarity=0.184 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCC---------CCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhhCCCCHHHHH
Q 027623 25 ASHVWRVRDLALSLAREEGLA---------SNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLEDEGLEESKKM 93 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~---------~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~~g~~~~~~~ 93 (221)
++|+.+|++....+....... ....++.++.+||||||||+.. ..+|++. .+|+++++++|+|...++
T Consensus 438 d~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGKG~-~~dHs~~Ga~~a~~i~~rl~l~~~~~~ 516 (854)
T PRK01759 438 DEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAKGR-GGDHAELGAVDMRQFAQQHGFDQREIE 516 (854)
T ss_pred HHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcCCC-CCChhHHHHHHHHHHHHHcCCCHHHHH
Confidence 479999999888775432110 0113678999999999999976 3467654 899999999999999999
Q ss_pred HHHHHHHHhcCCccccccc--CCCCC--hhhhhhhhhhhhhhhhhhHHHHHH
Q 027623 94 RILNIIKKMGFKDEIAGLA--NAEFS--PEFGVVQDADRLDAIGAIGIARCF 141 (221)
Q Consensus 94 ~V~~~I~~h~~~~~~~~~~--~~~~~--~ea~il~DAD~LD~lGa~gi~R~~ 141 (221)
.|+.+|.+|.......+.. .+|.+ -++..|.+.++|+.|-.+.++-..
T Consensus 517 ~v~~LV~~Hl~ms~~Aqr~Di~dp~~i~~fa~~vg~~~~L~~L~lLt~ADi~ 568 (854)
T PRK01759 517 TMAWLVQQHLLMSVTAQRRDIHDPEVVMNFAEEVQNQVRLDYLTCLTVADIC 568 (854)
T ss_pred HHHHHHHHhhHHHHHHhccCCCCHHHHHHHHHHhCCHhhhHHHHHHHHhHhh
Confidence 9999999996533221111 12333 257888888989988776666543
No 24
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.72 E-value=4.3e-08 Score=95.54 Aligned_cols=117 Identities=19% Similarity=0.102 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCC---------CCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhhCCCCHHHHH
Q 027623 25 ASHVWRVRDLALSLAREEGLA---------SNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLEDEGLEESKKM 93 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~---------~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~~g~~~~~~~ 93 (221)
++|+.+|++....+....... ..-.+++++.+||||||||+.. ..+|++. ++|+.+++++|+|...++
T Consensus 462 deHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGKg~-~~~Hs~~Ga~~a~~i~~rl~l~~~~~~ 540 (895)
T PRK00275 462 DAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGKGR-GGDHSELGAVDAEAFCQRHQLPAWDTR 540 (895)
T ss_pred HHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 479999999988875432100 0113578999999999999986 4467754 899999999999999999
Q ss_pred HHHHHHHHhcCCcccccc-c-CCCCC--hhhhhhhhhhhhhhhhhhHHHHHHh
Q 027623 94 RILNIIKKMGFKDEIAGL-A-NAEFS--PEFGVVQDADRLDAIGAIGIARCFT 142 (221)
Q Consensus 94 ~V~~~I~~h~~~~~~~~~-~-~~~~~--~ea~il~DAD~LD~lGa~gi~R~~~ 142 (221)
.|+.+|.+|.......+. . .+|.. .++..|.+..+|+.|-.+.++....
T Consensus 541 ~v~~LV~~HL~ms~~aqrrDi~d~~~i~~fa~~v~~~~~L~~L~lLT~ADi~a 593 (895)
T PRK00275 541 LVVWLVENHLLMSTTAQRKDLSDPQVIHDFALKVGDQTHLDYLYVLTVADINA 593 (895)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 999999999433222111 0 12222 4688888888899887777666543
No 25
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=98.71 E-value=2.3e-07 Score=81.35 Aligned_cols=103 Identities=27% Similarity=0.341 Sum_probs=75.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCC-----C----CchHH-------HHHHHHHhhC
Q 027623 22 SHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYL-----R----DPSEE-------KIVENFLEDE 85 (221)
Q Consensus 22 ~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~-----~----~~~~~-------~~a~~~L~~~ 85 (221)
.....|+.+|..+|..|++..|+ +..+...+.+||+|||||+.... + +.++. ..+..+|++.
T Consensus 147 ~~t~~Hs~~va~~a~~ia~~lgl--~~~~i~~l~~aalLHDIGKi~ip~~IL~K~g~Lt~eE~~~ik~H~~~g~~iL~~~ 224 (344)
T COG2206 147 DYTYGHSVRVAELAEAIAKKLGL--SEEKIEELALAGLLHDIGKIGIPDSILNKPGKLTEEEFEIIKKHPIYGYDILKDL 224 (344)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhhcccccCCHHHhCCCCCCCHHHHHHHHhchHHHHHHHHhc
Confidence 46679999999999999999997 34567889999999999997422 1 11221 6889999987
Q ss_pred C-CCHHHHHHHHHHHHHhc-------CCcccccccCCCCChhhhhhhhhhhhhhhh
Q 027623 86 G-LEESKKMRILNIIKKMG-------FKDEIAGLANAEFSPEFGVVQDADRLDAIG 133 (221)
Q Consensus 86 g-~~~~~~~~V~~~I~~h~-------~~~~~~~~~~~~~~~ea~il~DAD~LD~lG 133 (221)
+ ++.. ++..+.+|+ |+.+.+ .+..+++++|+.-||..|++.
T Consensus 225 ~~~~~~----~~~~~l~HHEr~DGtGYP~GL~---GeeI~l~aRIiAVADvydAlt 273 (344)
T COG2206 225 PEFLES----VRAVALRHHERWDGTGYPRGLK---GEEIPLEARIIAVADVYDALT 273 (344)
T ss_pred ccccHH----HHHHHHHhhhccCCCCCCCCCC---cccCChHhHHHHHhhHHHHHh
Confidence 6 5543 444444453 233322 266789999999999999986
No 26
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.70 E-value=6.2e-08 Score=94.04 Aligned_cols=115 Identities=19% Similarity=0.078 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCC---------CCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhhCCCCHHHHH
Q 027623 25 ASHVWRVRDLALSLAREEGLA---------SNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLEDEGLEESKKM 93 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~---------~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~~g~~~~~~~ 93 (221)
+.|+.+|++.+..+...+... ..-..++++.+|+||||||+.. ..+|++. ++|++|++++|+|.+.++
T Consensus 451 d~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~lAaLlHDIGKg~-~~dHs~~Ga~~a~~i~~Rl~l~~~~~~ 529 (869)
T PRK04374 451 DQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAKGR-GGDHSELGAVDARAFCLAHRLSEGDTE 529 (869)
T ss_pred HHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHHHHHHHhccCCC-CCChHHHhHHHHHHHHHHcCCCHHHHH
Confidence 479999999988776432110 0112467899999999999986 3467764 999999999999999999
Q ss_pred HHHHHHHHhcCCccccccc--CCCC--ChhhhhhhhhhhhhhhhhhHHHHH
Q 027623 94 RILNIIKKMGFKDEIAGLA--NAEF--SPEFGVVQDADRLDAIGAIGIARC 140 (221)
Q Consensus 94 ~V~~~I~~h~~~~~~~~~~--~~~~--~~ea~il~DAD~LD~lGa~gi~R~ 140 (221)
.|+.+|.+|.......+.. .+|. .-.+..|.+.+.|+.|-.+.++-+
T Consensus 530 ~v~~LV~~Hl~m~~~aqr~di~D~~~i~~fa~~v~~~~~L~~L~~Lt~ADi 580 (869)
T PRK04374 530 LVTWLVEQHLRMSVTAQKQDISDPEVIHRFATLVGTRERLDYLYLLTCADI 580 (869)
T ss_pred HHHHHHHHhhhHHHHHhccCCCCHHHHHHHHHHhCCHhHHHHHHhHHHHHc
Confidence 9999999996543221111 1122 235777888889998877665543
No 27
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=98.66 E-value=1.5e-07 Score=81.35 Aligned_cols=103 Identities=24% Similarity=0.288 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCC---------CchHH-------HHHHHHHhhCCC
Q 027623 24 DASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLR---------DPSEE-------KIVENFLEDEGL 87 (221)
Q Consensus 24 ~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~---------~~~~~-------~~a~~~L~~~g~ 87 (221)
.=.|+.||.+++..+|...++ ++...+.+..||.|||||+..... ++++. .++.++|.+.
T Consensus 186 tg~H~~Rv~~~~~~lAe~lgL--se~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~H~~~G~~il~~s-- 261 (360)
T COG3437 186 TGDHLERVAQYSELLAELLGL--SEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKGHPILGAEILKSS-- 261 (360)
T ss_pred hhhHHHHHHHHHHHHHHHhCC--CHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhcchHHHHHHHHHH--
Confidence 347999999999999999997 456788999999999999974321 22321 6888888752
Q ss_pred CHHHHHHHHHHHHHhc--C-----CcccccccCCCCChhhhhhhhhhhhhhhhh
Q 027623 88 EESKKMRILNIIKKMG--F-----KDEIAGLANAEFSPEFGVVQDADRLDAIGA 134 (221)
Q Consensus 88 ~~~~~~~V~~~I~~h~--~-----~~~~~~~~~~~~~~ea~il~DAD~LD~lGa 134 (221)
+........++..|. | +.+.+ .+...+.|+|++-||..|+|++
T Consensus 262 -~~~mq~a~eIa~~HHErwDGsGYPdgLk---Gd~IPl~arI~aiADvfDAL~s 311 (360)
T COG3437 262 -ERLMQVAAEIARHHHERWDGSGYPDGLK---GDEIPLSARIVAIADVFDALVS 311 (360)
T ss_pred -HHHHHHHHHHHHHhhhccCCCCCCCCCC---ccccchhHHHHHHHHHHHHHhc
Confidence 224666667777773 3 22222 2456678999999999999975
No 28
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=98.65 E-value=8.2e-08 Score=90.76 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLEDEGLEESKKMRILNIIKKM 102 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~~g~~~~~~~~V~~~I~~h 102 (221)
.+|+.+|++.+..+.... ..++++.+|||||||||.. ..+|++. ++++++++++|+|++.++.|+.+|.+|
T Consensus 382 DeHTL~~l~~~~~~~~~~------~~~~lL~LAALlHDIGKg~-g~dHs~~GA~~A~~i~~RLgl~~~~~e~V~~LV~~H 454 (693)
T PRK00227 382 DEHSLNTVANCALETVTV------ARPDLLLLGALYHDIGKGY-PRPHEQVGAEMVARAARRMGLNLRDRAVVQTLVAEH 454 (693)
T ss_pred HHHHHHHHHHHHHhhhcc------CccHHHHHHHHHHhhcCCC-CCChhHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHh
Confidence 479999999877765332 4578899999999999986 4577764 999999999999999999999999999
Q ss_pred cCCc
Q 027623 103 GFKD 106 (221)
Q Consensus 103 ~~~~ 106 (221)
....
T Consensus 455 L~ms 458 (693)
T PRK00227 455 TTLA 458 (693)
T ss_pred ccHh
Confidence 6543
No 29
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=98.64 E-value=1.4e-07 Score=69.93 Aligned_cols=106 Identities=31% Similarity=0.341 Sum_probs=66.1
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCC-------ch--HHHHHHHHHh------hCCC
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRD-------PS--EEKIVENFLE------DEGL 87 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~-------~~--~~~~a~~~L~------~~g~ 87 (221)
+.+.|+.+|+..+..++...+. +..+.+.+.+||||||+|+...... .. +...+..+++ ..++
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~--~~~~~~~l~~aaLlHDig~~~~~~~~~~~~~~~~~~h~~~g~~~~~~~~~~~~~~~ 79 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGL--SEEDIELLRLAALLHDIGKPGTPDAITEEESELEKDHAIVGAEILRELLLEEVIKL 79 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHhcCCccCccccCHHHHHHHHhhHHHHHHHHHHhhhcccccc
Confidence 5789999999999999987642 2267899999999999999753221 00 1144455553 3344
Q ss_pred CHHHHHHHHHHHHHhcCCcccccc----cCCCCChhhhhhhhhhhhhhhh
Q 027623 88 EESKKMRILNIIKKMGFKDEIAGL----ANAEFSPEFGVVQDADRLDAIG 133 (221)
Q Consensus 88 ~~~~~~~V~~~I~~h~~~~~~~~~----~~~~~~~ea~il~DAD~LD~lG 133 (221)
+.+.+..+ +..|......... ...+.++++.+|..||.++...
T Consensus 80 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~~~~~~ 126 (145)
T cd00077 80 IDELILAV---DASHHERLDGLGYPDGLKGEEITLEARIVKLADRLDALR 126 (145)
T ss_pred cHHHHHHH---HHHcccCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHHh
Confidence 54433333 3355321111000 0124578999999999998753
No 30
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.61 E-value=1.8e-07 Score=90.04 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=78.5
Q ss_pred CCCCCh---HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCchHH--HHHHHHHhhCCCCHHHHHH
Q 027623 20 DASHDA---SHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEE--KIVENFLEDEGLEESKKMR 94 (221)
Q Consensus 20 ~~~H~~---~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~~~~--~~a~~~L~~~g~~~~~~~~ 94 (221)
+.-|.+ .|+.+|+..+..+.... .+++++.+||||||||+... .+|++. .+++++++++|+|...++.
T Consensus 414 ~~~H~ytVd~Htl~~l~~~~~~~~~~------~~~~lL~lAaLlHDiGKg~~-~~Hs~~Ga~~a~~i~~RL~l~~~~~~~ 486 (774)
T PRK03381 414 DPVHRWTVDRHLVETAVRAAALTRRV------ARPDLLLLGALLHDIGKGRG-GDHSVVGAELARQIGARLGLSPADVAL 486 (774)
T ss_pred CCCccChHHHHHHHHHHHHHHHHhcc------CCHHHHHHHHHHHhhcCCCC-CChHHHHHHHHHHHHHHcCcCHHHHHH
Confidence 344543 69999998887766433 35678999999999999753 467654 8999999999999999999
Q ss_pred HHHHHHHhcCCccccccc--CCCCC--hhhhhhhh-hhhhhhhhhhHHH
Q 027623 95 ILNIIKKMGFKDEIAGLA--NAEFS--PEFGVVQD-ADRLDAIGAIGIA 138 (221)
Q Consensus 95 V~~~I~~h~~~~~~~~~~--~~~~~--~ea~il~D-AD~LD~lGa~gi~ 138 (221)
|+.+|.+|.......+.. ..|.. -.++.|.+ .++|+.|-.+.++
T Consensus 487 v~~LV~~Hl~~~~~a~rrdi~d~~~i~~f~~~vg~~~e~L~~L~~Lt~A 535 (774)
T PRK03381 487 LSALVRHHLLLPETATRRDLDDPATIEAVAEALGGDPVLLELLHALTEA 535 (774)
T ss_pred HHHHHHHhhhHHHHHhhcCCCCHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 999999996432211111 01222 24556666 6778877655544
No 31
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=98.39 E-value=9.7e-06 Score=72.74 Aligned_cols=70 Identities=23% Similarity=0.183 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCC-------CCchHH--HHHHHHHhhCCCCHHHHHHH
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYL-------RDPSEE--KIVENFLEDEGLEESKKMRI 95 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~-------~~~~~~--~~a~~~L~~~g~~~~~~~~V 95 (221)
+.|+..|++.+..+. +...+.+||||||+|+.... .+|++. .+++.+++++++|.+.++.+
T Consensus 229 ~~Htl~~l~~~~~l~----------~~l~lr~AaLlHDlGK~~t~~~~~~~~~gH~~~Ga~~a~~i~~RLk~p~~~~~~~ 298 (409)
T PRK10885 229 GIHTLMVLDQAAKLS----------PSLDVRFAALCHDLGKGLTPPEEWPRHHGHEPRGVKLVEQLCQRLRVPNECRDLA 298 (409)
T ss_pred HHHHHHHHHHHHhcC----------CCHHHHHHHHhccccCCCCCcccCcccCchhHhHHHHHHHHHHHcCcCHHHHHHH
Confidence 589999888776542 12358999999999996422 245544 89999999999999999999
Q ss_pred HHHHHHhcC
Q 027623 96 LNIIKKMGF 104 (221)
Q Consensus 96 ~~~I~~h~~ 104 (221)
+.+|.+|..
T Consensus 299 ~~lv~~H~~ 307 (409)
T PRK10885 299 LLVAEEHDN 307 (409)
T ss_pred HHHHHHhhc
Confidence 999999964
No 32
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=98.32 E-value=1.9e-06 Score=77.33 Aligned_cols=46 Identities=33% Similarity=0.351 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCC-C---CCCcHHHHHHHHHhhhccCCCCC
Q 027623 24 DASHVWRVRDLALSLAREEGLA-S---NPDSMEIVELAALLHDIGDYKYL 69 (221)
Q Consensus 24 ~~~H~~rV~~~a~~ia~~~~~~-~---~~~d~~~l~lAalLHDIg~~~~~ 69 (221)
+++|++-|+.+|.++....... . ++....++.+||||||||..+++
T Consensus 52 RFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIGHgPFS 101 (421)
T COG1078 52 RFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIGHGPFS 101 (421)
T ss_pred ccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccCCCccc
Confidence 5899999999999999864421 0 11223489999999999998754
No 33
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=98.15 E-value=7.7e-06 Score=75.93 Aligned_cols=100 Identities=24% Similarity=0.233 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCC---CCC--------Cch-----H------H--HHH
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYK---YLR--------DPS-----E------E--KIV 78 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~---~~~--------~~~-----~------~--~~a 78 (221)
=.+.|+.-|+.+|..-++..| .|..++.+||++||||+.+ |+. .|+ . . ..+
T Consensus 489 GTy~HSvmVAnLAEaAa~~IG-----an~lLaRVgayYHDIGK~~rP~~FiENQ~~g~N~Hd~lsP~lSa~II~sHv~eG 563 (700)
T COG1480 489 GTYQHSVMVANLAEAAAEEIG-----ANSLLARVGAYYHDIGKMKRPLFFIENQMGGKNPHDDLSPQLSALIIISHVKEG 563 (700)
T ss_pred CCccchhhHHHHHHHHHHHhC-----CchHHHHHHHHHhhcccccCCccccccccCCCCCcccCCHHHHHHHHHHhhhhH
Confidence 367999999999999999999 8999999999999999964 211 121 0 1 678
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcCCccc----------cc---------ccCCCCChhhhhhhhhhhhhh
Q 027623 79 ENFLEDEGLEESKKMRILNIIKKMGFKDEI----------AG---------LANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 79 ~~~L~~~g~~~~~~~~V~~~I~~h~~~~~~----------~~---------~~~~~~~~ea~il~DAD~LD~ 131 (221)
.+++++.++|.+ |.++|..|+...-+ .+ .++.|.+.|+.|+.-||..+|
T Consensus 564 v~mar~y~lPq~----iidii~eHhGTsLikYFY~kAke~~~~v~Ee~FRY~GPkPqSKEtaIImlADSvEA 631 (700)
T COG1480 564 VEMAREYKLPQE----IIDIIPEHHGTSLIKYFYYKAKEENPNVKEEEFRYPGPKPQSKETAIIMLADSVEA 631 (700)
T ss_pred HHHHHHcCCCHH----HHHHHHHhcCccHHHHHHHHHHHhCCCCCHhhccCCCCCCCcchhheehhHhHHHH
Confidence 899999999986 55677777532110 00 124788999999999999876
No 34
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=98.12 E-value=2.2e-05 Score=60.91 Aligned_cols=95 Identities=24% Similarity=0.202 Sum_probs=77.0
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCchHH-HHHHHHHhhCCCCHHHHHHHHHHHHH
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSEE-KIVENFLEDEGLEESKKMRILNIIKK 101 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~~~~-~~a~~~L~~~g~~~~~~~~V~~~I~~ 101 (221)
.-..|+..|....+.+|+..| .|.+-..++++|||+.+.....++++- -.+.++|++.+.+++ |.++|..
T Consensus 47 ~L~kHcla~eavMr~lARe~g-----EDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~ee----il~ai~~ 117 (212)
T COG2316 47 SLQKHCLAVEAVMRWLAREWG-----EDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEE----ILDAIMG 117 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-----ccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHH----HHHHHHH
Confidence 346899999999999999998 799999999999999998544445543 788999999999974 7778888
Q ss_pred hcCCcccccccCCCCChhhhhhhhhhhhhh
Q 027623 102 MGFKDEIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 102 h~~~~~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
|.-... .++.++..+.++-+|-+--
T Consensus 118 H~~~~~-----~~~et~~e~aL~AvD~~tG 142 (212)
T COG2316 118 HAAYTG-----TPRETRLEQALFAVDELTG 142 (212)
T ss_pred hhhhhc-----CCcccHHHHHHHhhccchh
Confidence 853332 1578899999999998753
No 35
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=98.07 E-value=1.1e-05 Score=73.70 Aligned_cols=74 Identities=19% Similarity=0.150 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCC----------CCchHH--HHHHHHHhhCCCCHHH
Q 027623 24 DASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYL----------RDPSEE--KIVENFLEDEGLEESK 91 (221)
Q Consensus 24 ~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~----------~~~~~~--~~a~~~L~~~g~~~~~ 91 (221)
-+.|+.+|++.+..+... ....++.+||||||||+.... .+|+.. .+++.+|+++++|...
T Consensus 259 v~~Htl~vl~~~~~l~~~-------~~~~~l~lAaLLHDiGK~~t~~~~~~g~~~f~gH~~~Ga~~a~~iL~rLk~s~~~ 331 (466)
T TIGR02692 259 VYEHSLTVLRQAIDLEDD-------GPDLVLRWAALLHDIGKPATRRFEPDGRVSFHHHEVVGAKMVRKRMRALKYSKQM 331 (466)
T ss_pred HHHHHHHHHHHHHhcccc-------ccCHHHHHHHHHhhccCCCCcccccCCCcccCcHHHHHHHHHHHHHHHhCCCHHH
Confidence 468999998887655311 112379999999999986421 135543 8999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 027623 92 KMRILNIIKKMGF 104 (221)
Q Consensus 92 ~~~V~~~I~~h~~ 104 (221)
++.|+.+|.+|..
T Consensus 332 ~~~V~~LV~~H~~ 344 (466)
T TIGR02692 332 VEDVSRLVELHLR 344 (466)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999963
No 36
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=98.07 E-value=2.4e-05 Score=66.31 Aligned_cols=103 Identities=21% Similarity=0.216 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCchH---------------H-HHHHHHHhhCCCC
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSE---------------E-KIVENFLEDEGLE 88 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~~~---------------~-~~a~~~L~~~g~~ 88 (221)
..|+.-|++.+..++..++. .+.+++.++++|||+|+.....+++. . +...+...++|.+
T Consensus 143 a~ht~~~~~l~~~~~~~y~~----~n~dli~Ag~ilHdigK~~el~~~~~~~yt~~g~ligHia~~~d~i~~~a~El~~~ 218 (287)
T COG3481 143 AEHTLTVLELYKRISEIYPT----VNRELIYAGAILHDIGKVLELTGPEATEYTVRGNLIGHIALIVDEITKAARELGID 218 (287)
T ss_pred HHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHHhcccccccCCCcccccceeccceeEEEEeehhHHHHHHHHhCCC
Confidence 37999999999999998874 89999999999999999753222211 1 4577888889999
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhh
Q 027623 89 ESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAI 132 (221)
Q Consensus 89 ~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~l 132 (221)
.+..-.+.++|..|....+.+. +..|...++.++...|.+|+-
T Consensus 219 ~~~v~~l~h~Ilshhg~~e~gs-pr~~~~~eaeil~~id~~da~ 261 (287)
T COG3481 219 DEEVLALRHEILSHHGKLEYGS-PREPNLKEAEILHMIDNLDAQ 261 (287)
T ss_pred chhhhHhhHhhhhhccCccccC-cCCCchhHHHHHHHHHcccHH
Confidence 8888889999999987666543 346777899999999999964
No 37
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=98.05 E-value=2.7e-05 Score=61.37 Aligned_cols=77 Identities=27% Similarity=0.235 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHH-------HHHhCCCCCCCcHHHHHHHHHhhhccCCCC----------------CCCchHH--HHHH
Q 027623 25 ASHVWRVRDLALSL-------AREEGLASNPDSMEIVELAALLHDIGDYKY----------------LRDPSEE--KIVE 79 (221)
Q Consensus 25 ~~H~~rV~~~a~~i-------a~~~~~~~~~~d~~~l~lAalLHDIg~~~~----------------~~~~~~~--~~a~ 79 (221)
.+|+.+|...+..+ +...+. ...+++.++|+|||||+... ...|+.. .++.
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~----~~~~~~~~~~~lHDiGK~~~~FQ~~~~~~~~~~~~~~~~H~~~s~~~~~ 77 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGK----LLRELLDLLALLHDIGKINPGFQAKLMKAYKRGRRVASRHSLLSAKLLD 77 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhh----HHHHHHHHHHHHccCccCCHHHHHHhhcccccccCCCCCHHHHHHHHHH
Confidence 47999999999874 444442 35789999999999999621 1123322 6677
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcCC
Q 027623 80 NFLEDEGLEESKKMRILNIIKKMGFK 105 (221)
Q Consensus 80 ~~L~~~g~~~~~~~~V~~~I~~h~~~ 105 (221)
.++...+++......|..+|..|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~~HHg~ 103 (177)
T TIGR01596 78 ALLIKKGYEEEVFKLLALAVIGHHGG 103 (177)
T ss_pred HHHHHccccHHHHHHHHHHHHHhCCC
Confidence 77888899999999999999999753
No 38
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=97.96 E-value=8.2e-06 Score=66.34 Aligned_cols=105 Identities=28% Similarity=0.309 Sum_probs=76.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHh---CCC---------CCCCcHHHHHHHHHhhhccCCCCCCCchHH------HHHHHH
Q 027623 20 DASHDASHVWRVRDLALSLAREE---GLA---------SNPDSMEIVELAALLHDIGDYKYLRDPSEE------KIVENF 81 (221)
Q Consensus 20 ~~~H~~~H~~rV~~~a~~ia~~~---~~~---------~~~~d~~~l~lAalLHDIg~~~~~~~~~~~------~~a~~~ 81 (221)
...|+.-|+.-|...|.+|.+.. |.+ .....+-++.++|+|||||......+|+.- .++.++
T Consensus 54 YNDHG~vHa~Iva~~Al~i~~lL~~~Gv~ps~v~dg~gd~eD~~vivlLga~LHDIGnsVHRd~H~~~sa~La~~IldrI 133 (269)
T COG3294 54 YNDHGPVHARIVANSALAIYKLLLEKGVKPSGVTDGVGDEEDSPVIVLLGAYLHDIGNSVHRDDHELYSAVLALDILDRI 133 (269)
T ss_pred ccCCCceeeeeccchHHHHHHHHHhcCCCcccccccCCchhhhhHHHHHHHHHHhccchhccccHHHHhHHHhHHHHHHH
Confidence 35699999999999999888643 321 011236788999999999999877777642 566666
Q ss_pred HhhCCCCH-HH----HHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhh
Q 027623 82 LEDEGLEE-SK----KMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAI 132 (221)
Q Consensus 82 L~~~g~~~-~~----~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~l 132 (221)
|.+. ||+ .+ ...|.++|-.|.-. ..|.+.|+-++.-||-+|.-
T Consensus 134 L~ki-y~~~~k~~~~rsevlhAI~ch~~~-------~~~LTiEagvi~VADgtDmt 181 (269)
T COG3294 134 LSKI-YPDPEKAVRVRSEVLHAIYCHDEN-------ETPLTIEAGVIAVADGTDMT 181 (269)
T ss_pred hhhh-cCCHHHHHhHHHHHHHHhhccCCC-------CCceeeeeeeEEeccccccc
Confidence 6654 443 33 55788999888642 26889999999999999863
No 39
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.96 E-value=5.3e-05 Score=60.15 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCCCC---CCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCC---------C
Q 027623 4 RVRKAEKLVERSMKGNDA---SHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLR---------D 71 (221)
Q Consensus 4 ~i~~~~~~~~~~~~~~~~---~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~---------~ 71 (221)
.++.+......+-..... ---++|.+.++.+|. ..| .|.+ +.+||||||||...... +
T Consensus 3 ~~~~i~~l~~~~g~~~y~Ge~Vs~leH~LQ~A~lA~----~~G-----ad~e-lvvAALLHDIGhll~~~~~~~~~~g~~ 72 (179)
T TIGR03276 3 TLDEIFALFDEHGARQYGGEAVSQLEHALQCAQLAE----AAG-----ADDE-LIVAAFLHDIGHLLADEGATPMGRGGD 72 (179)
T ss_pred hHHHHHHHHHhcCccccCCCCCcHHHHHHHHHHHHH----HcC-----CCHH-HHHHHHHHhcchhhhcccccccccCCC
Confidence 356666666666544332 245789999977655 455 5654 48999999999853210 1
Q ss_pred chHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 027623 72 PSEEKIVENFLEDEGLEESKKMRILNIIKKMG 103 (221)
Q Consensus 72 ~~~~~~a~~~L~~~g~~~~~~~~V~~~I~~h~ 103 (221)
..+..++..+|+.. |++ .|.++|..|.
T Consensus 73 ~~He~iga~~Lr~~-F~~----~V~~lV~~Hv 99 (179)
T TIGR03276 73 DHHEELAADYLREL-FSP----SVTEPIRLHV 99 (179)
T ss_pred ccHHHHHHHHHHHH-cCH----HHHHHHHHHH
Confidence 11227899999988 997 4667777774
No 40
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=97.89 E-value=7.8e-05 Score=64.98 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=65.3
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCchH-------------H-HHHHHHHhhCC--
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPSE-------------E-KIVENFLEDEG-- 86 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~~~-------------~-~~a~~~L~~~g-- 86 (221)
.++.|++.|+..|+.|+...+ .+.+++.+|||+||||..++.-..|. . ..+.+++..+.
T Consensus 62 tR~~Hsl~V~~iar~~~~~l~-----~~~~l~~aaaL~HDiGh~PfgH~gE~~l~~~~~~~~~f~hn~~s~ri~~~l~~~ 136 (336)
T PRK01286 62 TRLTHTLEVAQIARTIARALR-----LNEDLTEAIALGHDLGHTPFGHAGEDALNELMKEYGGFEHNEQSLRVVDKLEKR 136 (336)
T ss_pred cHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHhcCCCCCCcchHHHHHHHhccccCCCcHHHHHHHHHHHHhhc
Confidence 468999999999999999887 56789999999999999986433221 1 22223332210
Q ss_pred -CCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhh
Q 027623 87 -LEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLD 130 (221)
Q Consensus 87 -~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD 130 (221)
..-+....+...|..|.++... ....+.+++++||.-||.+-
T Consensus 137 ~~glnLT~~tL~gilKyp~~~~~--~k~~~~tle~~ive~ADdIa 179 (336)
T PRK01286 137 YDGLNLTWEVREGILKHSGPRNA--PLGTAATLEGQIVRLADEIA 179 (336)
T ss_pred CCCccCCHHHHhhHHhCCccccc--cccCCCchHHHHHHHHHHHH
Confidence 0111223566667777654210 00246778999999888753
No 41
>PRK10854 exopolyphosphatase; Provisional
Probab=97.88 E-value=0.00014 Score=67.13 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=60.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCC----CCCCcHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHhh---CCCCHHHHHH
Q 027623 22 SHDASHVWRVRDLALSLAREEGLA----SNPDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLED---EGLEESKKMR 94 (221)
Q Consensus 22 ~H~~~H~~rV~~~a~~ia~~~~~~----~~~~d~~~l~lAalLHDIg~~~~~~~~~~~~~a~~~L~~---~g~~~~~~~~ 94 (221)
+.+..|..+|..+|..|....... ..+.+..++..||+|||||......+|. +-+..++.. .||+..+...
T Consensus 327 ~~d~~ha~~V~~~a~~LFd~l~~~h~~~~~~~~~~LL~~Aa~LhdiG~~I~~~~~~--~Hs~yiI~~s~l~G~s~~E~~~ 404 (513)
T PRK10854 327 NIDREQARRVLETTMQLYEQWREQNPKLAHPQLEALLKWAAMLHEVGLNINHSGLH--RHSAYILQNTDLPGFNQEQQLM 404 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHhcCCccCCCCcc--hhHHHHHhcCCCCCCCHHHHHH
Confidence 568899999999999999754210 0235678999999999999986444433 223333332 4899999999
Q ss_pred HHHHHHHhcCC
Q 027623 95 ILNIIKKMGFK 105 (221)
Q Consensus 95 V~~~I~~h~~~ 105 (221)
|..++.+|+.+
T Consensus 405 iA~i~ryh~k~ 415 (513)
T PRK10854 405 LATLVRYHRKA 415 (513)
T ss_pred HHHHHHHhcCC
Confidence 99999999854
No 42
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=97.73 E-value=0.00014 Score=66.85 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=60.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhCC--CCCCCcHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHhh---CCCCHHHHHHHH
Q 027623 22 SHDASHVWRVRDLALSLAREEGL--ASNPDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLED---EGLEESKKMRIL 96 (221)
Q Consensus 22 ~H~~~H~~rV~~~a~~ia~~~~~--~~~~~d~~~l~lAalLHDIg~~~~~~~~~~~~~a~~~L~~---~g~~~~~~~~V~ 96 (221)
.-+..|..+|..+|..|...... ...+.+..++..||+|||||......+|. +-+..++.. .||+..+...|.
T Consensus 321 ~~d~~ha~~v~~~a~~Lf~~l~~~~~l~~~~~~LL~~Aa~LhdiG~~I~~~~~~--~Hs~yiI~~s~l~G~s~~E~~~iA 398 (496)
T PRK11031 321 QIDTEQAQRVAKLADNFLQQVENEWHLEPRSRELLISACQLHEIGLSVDFKQAP--QHAAYLVRNLDLPGFTPAQKKLLA 398 (496)
T ss_pred CcCHHHHHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHhcCCccCCCccc--hHHHHHHhcCCCCCCCHHHHHHHH
Confidence 56789999999999999875421 01346788999999999999986433332 222223322 489999999999
Q ss_pred HHHHHhcCC
Q 027623 97 NIIKKMGFK 105 (221)
Q Consensus 97 ~~I~~h~~~ 105 (221)
.++.+|+.+
T Consensus 399 ~i~~~h~k~ 407 (496)
T PRK11031 399 TLLLNQTNP 407 (496)
T ss_pred HHHHHhcCC
Confidence 999999754
No 43
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=97.58 E-value=0.00025 Score=63.54 Aligned_cols=70 Identities=7% Similarity=-0.096 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCC---------CCCchHH--HHHHHHHhhCCCCHHHHH
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKY---------LRDPSEE--KIVENFLEDEGLEESKKM 93 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~---------~~~~~~~--~~a~~~L~~~g~~~~~~~ 93 (221)
+.|+..|+..+..+. .+ -.+.+||||||+|+... +-+|++. .+++.+++++.+|...++
T Consensus 230 ~~htl~~l~~~~~~~---------~~-l~lR~AaLlHDiGK~~t~~~~~~~~~~~gHe~~G~~~a~~i~~RLk~pn~~~~ 299 (417)
T PRK13298 230 GNYILMGLSKISKLT---------KD-IDIRFSYLCQFLGSMIPINQIKRNYKKIFFDKYAASLIKNLCKRFKIPSYIRN 299 (417)
T ss_pred HHHHHHHHHHHHhcC---------CC-HHHHHHHHHhhhcCCCCCCccCCCCcccChhHhHHHHHHHHHHHhCCCHHHHH
Confidence 568887777665421 23 35899999999999631 1234443 899999999999999999
Q ss_pred HHHHHHHHhcC
Q 027623 94 RILNIIKKMGF 104 (221)
Q Consensus 94 ~V~~~I~~h~~ 104 (221)
.++.+|.+|..
T Consensus 300 ~~~~li~~H~~ 310 (417)
T PRK13298 300 IAVLNTGFYFF 310 (417)
T ss_pred HHHHHHHHHhh
Confidence 99999999965
No 44
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00025 Score=63.11 Aligned_cols=51 Identities=31% Similarity=0.388 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCch
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPS 73 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~~ 73 (221)
-.+.|++.|++.++.|+...+........++++.|||.||||..++.-..|
T Consensus 68 TRLTHSLEVAQIgRsia~~l~~~~~~~~~dL~E~a~LaHDiGhPPFGH~GE 118 (412)
T COG0232 68 TRLTHSLEVAQIGRSIARELGLDLDLPFEDLVETACLAHDIGHPPFGHAGE 118 (412)
T ss_pred ccchhhHHHHHHHHHHHHHhccccCCChHHHHHHHHHHhcCCCCCCCccHH
Confidence 468999999999999999988300011299999999999999998755444
No 45
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=97.47 E-value=0.00044 Score=56.07 Aligned_cols=96 Identities=25% Similarity=0.272 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCC-----CCCC---CchHH--------HHHHHHHhhCCCC
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDY-----KYLR---DPSEE--------KIVENFLEDEGLE 88 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~-----~~~~---~~~~~--------~~a~~~L~~~g~~ 88 (221)
-.|+.+|+.+|..|+..+.......|...++..||+||+.-. +.+- +++-. .+..+++.+ .+|
T Consensus 31 A~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~TPVKy~tPelr~~~~~VE~~m~~~~i~~-~iP 109 (215)
T PF12917_consen 31 AEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKTPVKYATPELREMLAQVEEEMTENFIKK-EIP 109 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S-SSSS-HHHHHHHHHHHHHHHHHHHHH-HS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHh-hCC
Confidence 379999999999999742111135788899999999997643 2221 22211 344555543 366
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhh
Q 027623 89 ESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAI 132 (221)
Q Consensus 89 ~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~l 132 (221)
++-.+.-...+. . ...++++++||.-||++|++
T Consensus 110 ~e~q~~Y~~~l~-----E------~KDdt~EG~Iv~~ADkidal 142 (215)
T PF12917_consen 110 EEFQEAYRRRLK-----E------GKDDTLEGQIVKAADKIDAL 142 (215)
T ss_dssp GGGHHHHHHHHS--------------SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-----c------CCcccHHHHHHHHHHHHHHH
Confidence 654433222221 1 13568999999999999986
No 46
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=97.44 E-value=0.0004 Score=62.51 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCCch
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRDPS 73 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~~~ 73 (221)
..+.|++.|+++|+.|+...+ .+..++..|||+||||..++.-..|
T Consensus 70 tRltHslev~~~~r~~~~~~~-----~~~~~~~~~~l~hd~GhpPfgH~gE 115 (428)
T PRK03007 70 TRLTHSLEVAQIGRGIAAGLG-----CDPDLVDLAGLAHDIGHPPYGHNGE 115 (428)
T ss_pred cHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHhcCCCCCCcccHH
Confidence 468999999999999999888 5789999999999999998654433
No 47
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=97.43 E-value=0.00051 Score=61.14 Aligned_cols=48 Identities=27% Similarity=0.285 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCC------CCCcHHHHHHHHHhhhccCCCCCC
Q 027623 23 HDASHVWRVRDLALSLAREEGLAS------NPDSMEIVELAALLHDIGDYKYLR 70 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~------~~~d~~~l~lAalLHDIg~~~~~~ 70 (221)
.++.|++.|++.|+.|+...+... ...+..++++|||+||||..++.-
T Consensus 38 tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiGhpPfgH 91 (381)
T TIGR01353 38 TRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIGNPPFGH 91 (381)
T ss_pred CHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCCCCCCcc
Confidence 468999999999999998765310 113789999999999999998643
No 48
>PRK03826 5'-nucleotidase; Provisional
Probab=97.40 E-value=0.0027 Score=51.32 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=67.4
Q ss_pred CCCChHHHHHHHHHHHHHHHH----hCCCCCCCcHHHHHHHHHhhhccCC-----CC----CCCc-hH----H--HHHHH
Q 027623 21 ASHDASHVWRVRDLALSLARE----EGLASNPDSMEIVELAALLHDIGDY-----KY----LRDP-SE----E--KIVEN 80 (221)
Q Consensus 21 ~~H~~~H~~rV~~~a~~ia~~----~~~~~~~~d~~~l~lAalLHDIg~~-----~~----~~~~-~~----~--~~a~~ 80 (221)
+.-.-+|+.+|+-+|..++.. .+ ...|++-+...||+||++=. +. .... .+ . ....+
T Consensus 26 ~EsVAeHs~~vAliA~~La~i~~~~~~---~~vd~~rv~~~aL~HDl~E~~tGDi~tPvK~~~~~~~~~~~~~E~~a~~~ 102 (195)
T PRK03826 26 TENVSEHSLQVAMVAHALAVIKNRKFG---GNLNAERIALLAMYHDASEVLTGDLPTPVKYFNPEIAHEYKKIEKIAEQK 102 (195)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcchHHHhcCCcccccccccchhHHHHHHHHHHHHHH
Confidence 345569999999999998842 33 24799999999999998643 21 1111 01 1 33445
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHHhhhc
Q 027623 81 FLEDEGLEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGG 145 (221)
Q Consensus 81 ~L~~~g~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~~y~~ 145 (221)
++. .+|++........+.. + ...++++++|.+||+|+++ ..|..|..
T Consensus 103 l~~--~LP~~l~~~~~~~~~e--~---------e~~~~Ea~lvK~aDkL~a~-----l~a~~e~~ 149 (195)
T PRK03826 103 LLD--MLPEELQEDFRPLLDS--H---------AASEEEKAIVKQADALCAY-----LKCLEELS 149 (195)
T ss_pred HHH--hCCHHHHHHHHHHHhc--c---------cCCcHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 553 3677655555554432 1 2357899999999999974 55665553
No 49
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=97.38 E-value=0.00076 Score=53.12 Aligned_cols=110 Identities=28% Similarity=0.386 Sum_probs=71.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCC-----C--CchH---H--HHHHHHHhhCCCC
Q 027623 21 ASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYL-----R--DPSE---E--KIVENFLEDEGLE 88 (221)
Q Consensus 21 ~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~-----~--~~~~---~--~~a~~~L~~~g~~ 88 (221)
+.-.-+|+.+|+-+|..++...+. ..|..-+...||+||++=.... . .... . ..+.+++.. +|
T Consensus 20 ~EsVAeHS~~vA~~a~~la~~~~~---~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~--Lp 94 (165)
T PF13023_consen 20 PESVAEHSWRVALIALLLAEEAGP---DLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEEREEAAIEELFSL--LP 94 (165)
T ss_dssp G-BHHHHHHHHHHHHHHHHHHHH----HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHHHHHHHHHHHCTT--SS
T ss_pred CccHHHHHHHHHHHHHHHhHHhcc---cCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHHHHHHHHHHHHHH--hh
Confidence 445579999999999999987751 3688888889999998753211 1 1111 1 223333322 77
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHHhhhcccCCc
Q 027623 89 ESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRV 150 (221)
Q Consensus 89 ~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~~y~~~~~~~ 150 (221)
.+....+..++.. |. ...+++++++.++|+|+. +..+..|.+..+..
T Consensus 95 ~~l~~~~~~l~~E--~e--------~~~s~ea~~vk~~D~l~~-----~lq~~~~~~~~~~~ 141 (165)
T PF13023_consen 95 EELQEELKELWEE--FE--------EGESPEAKLVKAADKLEP-----LLQALEYEGDGWSE 141 (165)
T ss_dssp CHHHHHHHHHHHH--HH--------HT-SHHHHHHHHHHHHHH-----HHHHHHHHHCCT-T
T ss_pred hhHHHHHHHHHHH--hh--------cCCCHHHHHHHHhhhhhH-----HHHHHHHccccchH
Confidence 7777777777762 21 347899999999999996 45667777655544
No 50
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=97.23 E-value=0.018 Score=46.54 Aligned_cols=103 Identities=26% Similarity=0.182 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCCC-------chH---H-HHHHHHHhhCCCC--HH
Q 027623 24 DASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLRD-------PSE---E-KIVENFLEDEGLE--ES 90 (221)
Q Consensus 24 ~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~~-------~~~---~-~~a~~~L~~~g~~--~~ 90 (221)
.-+|+.+|+.+|..++...+......|+.-+...||+||.+=.-...- .+. . ..+.+-+.+..++ .+
T Consensus 34 vaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~~~p~e 113 (193)
T COG1896 34 VAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLFGLPEE 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHcccCCcHH
Confidence 458999999999999986642112368999999999999764321110 011 1 2233333333333 33
Q ss_pred HHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHHhhhc
Q 027623 91 KKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGG 145 (221)
Q Consensus 91 ~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~~y~~ 145 (221)
..+.....+. ..++++++|.+||+|+.+ ..++.|-.
T Consensus 114 ~~~~~~~~~~--------------~~s~ea~~vk~aDkl~~~-----l~~~~~~~ 149 (193)
T COG1896 114 LLELFREYEK--------------RSSLEARIVKDADKLELL-----LQALEYEQ 149 (193)
T ss_pred HHHHHHHHHc--------------cCCHHHHHHHHHHHHHHH-----HHHHHHHh
Confidence 3333332221 257899999999999965 45555553
No 51
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only]
Probab=97.18 E-value=0.011 Score=46.90 Aligned_cols=139 Identities=20% Similarity=0.267 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCC----CCC---chH--H--HHHHHHHhhCCCCHHHHH
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKY----LRD---PSE--E--KIVENFLEDEGLEESKKM 93 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~----~~~---~~~--~--~~a~~~L~~~g~~~~~~~ 93 (221)
-.|..|+.-++..+-. .+ .|.+-+.--|+.|||.-... ..+ .++ + -.|.+.+.++=.+....+
T Consensus 57 adHMYRM~llaml~~d-~~-----vnr~rC~kiAlVHD~AEslVgditP~~~vsKeeK~rre~eamk~ic~~l~~~~~ak 130 (210)
T KOG3197|consen 57 ADHMYRMALLAMLIKD-PG-----VNRERCMKIALVHDIAESLVGDITPSDGVSKEEKHRREFEAMKYICQLLIGELRAK 130 (210)
T ss_pred HHHHHHHHHHHHHhcC-CC-----cCHHHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 4789998888877654 44 78899999999999875321 111 111 1 233333333212233344
Q ss_pred HHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHHhhhcccCCccCCCCCCCCCcccHHHhhhhccc
Q 027623 94 RILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQ 173 (221)
Q Consensus 94 ~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~~y~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 173 (221)
.|...-.. |. ...++++++|.|-|++|. |+.+|.|...++.+
T Consensus 131 Ei~elw~e--YE--------~~ss~Eak~VKdlDK~eM-----i~QafEYE~~~ng~----------------------- 172 (210)
T KOG3197|consen 131 EITELWLE--YE--------EASSLEAKFVKDLDKFEM-----IVQAFEYEKKHNGE----------------------- 172 (210)
T ss_pred HHHHHHHH--HH--------hcCchhHHHHHhhHHHHH-----HHHHHHHHHHhccc-----------------------
Confidence 44443321 11 346899999999999996 68899998766543
Q ss_pred cHHHHHHHHHhcchhhcCCHHHHHHHHHHHHHHHHHHH
Q 027623 174 TTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFLM 211 (221)
Q Consensus 174 ~~i~hf~ekll~l~~~~~T~~~r~~a~~r~~~~~~f~~ 211 (221)
.-++.|+.- ...++|+.++....+-...=+.|+.
T Consensus 173 ~~lq~F~st----~g~~~~~~vk~w~~el~~~R~~~~~ 206 (210)
T KOG3197|consen 173 KDLQQFFST----VGKFKTPEVKKWVSELLEERQKFIA 206 (210)
T ss_pred chHHHHHHh----cccccChHHHHHHHHHHHHHHHHHH
Confidence 234445422 4677899988766554433334443
No 52
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=97.08 E-value=0.0012 Score=52.90 Aligned_cols=72 Identities=32% Similarity=0.393 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCC---CC-------------C-c-h--H--------H
Q 027623 24 DASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKY---LR-------------D-P-S--E--------E 75 (221)
Q Consensus 24 ~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~---~~-------------~-~-~--~--------~ 75 (221)
-|.|+..++..|..|++..+. .+++.+++++||||||+... .. + . . + .
T Consensus 95 ~~~~s~~~a~~a~~la~~~~~----~~~~~a~~~gLL~~iG~l~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~h~ 170 (196)
T PF08668_consen 95 FWRHSLAAAAIARRLARELGF----DDPDEAYLAGLLHDIGKLLLLSLFPEYYEEILQEVKQEPESREEAERELFGVTHA 170 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHCTC----CHHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHHHHCTHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHcCCCCHHHHHHHHHcCCHH
Confidence 378999999999999998873 56799999999999998521 00 0 1 0 1 1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 027623 76 KIVENFLEDEGLEESKKMRILNIIKKMG 103 (221)
Q Consensus 76 ~~a~~~L~~~g~~~~~~~~V~~~I~~h~ 103 (221)
+++..+++.+|+|+. |+.+|.+|+
T Consensus 171 ~lg~~l~~~W~lP~~----i~~~i~~hh 194 (196)
T PF08668_consen 171 ELGAALLRKWGLPEE----IVEAIRHHH 194 (196)
T ss_dssp HHHHHHHHHTT--HH----HHHHHHHTT
T ss_pred HHHHHHHHHcCCCHH----HHHHHHHHh
Confidence 688899999999984 667888875
No 53
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=97.07 E-value=0.0018 Score=58.51 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHHHHHHhC-CC-----CCCCcHHHHHHHHHhhhccCCCCCCCch
Q 027623 23 HDASHVWRVRDLALSLAREEG-LA-----SNPDSMEIVELAALLHDIGDYKYLRDPS 73 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~-~~-----~~~~d~~~l~lAalLHDIg~~~~~~~~~ 73 (221)
.++.|++.|++.|+.|+...+ .. ....+..++.+|||+||||..++.-..|
T Consensus 58 tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiGhpPfgH~gE 114 (432)
T PRK05318 58 TRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIGHPPFGHGGE 114 (432)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCCCCCCcccHH
Confidence 568999999999999998662 10 0012678999999999999998654333
No 54
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=96.88 E-value=0.0026 Score=57.61 Aligned_cols=51 Identities=29% Similarity=0.308 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHHHHHHhC--CCCC--------CCcHHHHHHHHHhhhccCCCCCCCch
Q 027623 23 HDASHVWRVRDLALSLAREEG--LASN--------PDSMEIVELAALLHDIGDYKYLRDPS 73 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~--~~~~--------~~d~~~l~lAalLHDIg~~~~~~~~~ 73 (221)
.++.|++.|+..++.|+...+ +... .....++.+|||+||||..++.-..|
T Consensus 61 tRltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~~lv~aa~L~HDiGhpPFgH~gE 121 (440)
T PRK01096 61 TRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIGNPPFGHFGE 121 (440)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHhcCCCCCCcccHH
Confidence 568999999999999976543 1100 01235999999999999998754443
No 55
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=96.85 E-value=0.004 Score=51.24 Aligned_cols=63 Identities=27% Similarity=0.377 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-----hHHHHHHHHHHHHHHHHhCCC--CCC----Cc----HHHHHHHHHhhhccCC
Q 027623 4 RVRKAEKLVERSMKGNDASHD-----ASHVWRVRDLALSLAREEGLA--SNP----DS----MEIVELAALLHDIGDY 66 (221)
Q Consensus 4 ~i~~~~~~~~~~~~~~~~~H~-----~~H~~rV~~~a~~ia~~~~~~--~~~----~d----~~~l~lAalLHDIg~~ 66 (221)
.+++..+++...=+....-|. ++|++.|+.+|.+++..+..+ .++ .+ ..++.+||||||||+.
T Consensus 43 ~l~~~~~~~~~~PAs~~~Hha~~GGLl~HtLev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 43 PLERLAELVQQLPASENHHHAYLGGLLDHTLEVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKL 120 (218)
T ss_pred HHHHHHHHHHhCCCCCcCCccccchHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhhh
Confidence 455555555544333222233 589999999999999876321 000 11 2589999999999996
No 56
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=96.81 E-value=0.0033 Score=55.96 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHHHHHhCCC------CCCCcHHHHHHHHHhhhccCCCCCC----------------CchHH--HHH
Q 027623 23 HDASHVWRVRDLALSLAREEGLA------SNPDSMEIVELAALLHDIGDYKYLR----------------DPSEE--KIV 78 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~------~~~~d~~~l~lAalLHDIg~~~~~~----------------~~~~~--~~a 78 (221)
-+++|++.|..+|..+....+-. -++.|...+.+||||||||..+++- .|+.. .++
T Consensus 73 sRfeHsLG~~~lA~~~v~~L~~~q~~El~It~~d~~~vqvA~LLHDIGHGPfSHmFe~~f~~~v~s~~e~~HE~~si~~i 152 (498)
T KOG2681|consen 73 SRFEHSLGTYTLAGILVNALNKNQCPELCITEVDLQAVQVAALLHDIGHGPFSHLFEGEFTPMVRSGPEFYHEDMSIDMI 152 (498)
T ss_pred chhhhhhhhHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhhcCCCchhhhhhheecccccCCcccchhhhHHHHH
Confidence 35899999999999888654321 1446788999999999999986421 23322 333
Q ss_pred HHHHhh----------CCCCHHHHHHHHHHHHHhcCC-c--ccccccCCCCChhhhhhh------hhhhhhhhh
Q 027623 79 ENFLED----------EGLEESKKMRILNIIKKMGFK-D--EIAGLANAEFSPEFGVVQ------DADRLDAIG 133 (221)
Q Consensus 79 ~~~L~~----------~g~~~~~~~~V~~~I~~h~~~-~--~~~~~~~~~~~~ea~il~------DAD~LD~lG 133 (221)
..+... +.+|...+..|+..|..-+-. . ..++ +....+....||. |-|+.|+|-
T Consensus 153 ~~i~~~~~i~~~~~~~~~~~~~~~~~vKdmI~g~sE~~~~w~l~g-~~~~ksflfdIVsN~rnGiDVDK~DYl~ 225 (498)
T KOG2681|consen 153 KKISNEMQIKRIARCLLNIDHQDADAVKDMILGSSEDDHKWYLKG-PDENKSFLFDIVSNDRNGLDVDKFDYLR 225 (498)
T ss_pred HHHhhhhhhhhHHHhhcCCCHHHHHHHHHHhcCcccccccccccC-CCCCceEEEEEecCCcccccchhHHHHH
Confidence 333332 247888899999999755322 1 0110 1122334444553 889988874
No 57
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=96.46 E-value=0.054 Score=50.42 Aligned_cols=101 Identities=22% Similarity=0.167 Sum_probs=76.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHh--hhccCCCCCCCchHH-HHHHHHHhhCCCCHHHHHHHHHH
Q 027623 22 SHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALL--HDIGDYKYLRDPSEE-KIVENFLEDEGLEESKKMRILNI 98 (221)
Q Consensus 22 ~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalL--HDIg~~~~~~~~~~~-~~a~~~L~~~g~~~~~~~~V~~~ 98 (221)
|--++-+.|+..+|..|+...+ ..+...+.-||.| .|+.-.-...=++-. .+++.++...|.++ .|+.+
T Consensus 353 Gtl~dK~~Ri~~la~~ia~~l~----~~~~~~~~rAa~L~KaDL~T~mV~EFPELQGiMG~~YA~~~GE~~----~VA~A 424 (548)
T PF02092_consen 353 GTLYDKTERIRKLARYIAEQLG----EEDKEDAERAALLCKADLVTNMVGEFPELQGIMGRYYALADGESE----EVALA 424 (548)
T ss_pred CCHHHHHHHHHHHHHHHHHHhc----hhhHHHHHHHHHHHHHhhhhcccccChHHHHHHHHHHHHHCCCch----HHHHH
Confidence 3446889999999999999885 2678889999988 455443322223323 89999999989886 68899
Q ss_pred HHHhcCCcccccccCCCCChhhhhhhhhhhhhhh
Q 027623 99 IKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAI 132 (221)
Q Consensus 99 I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~l 132 (221)
|..|-.+... .+.-|.++.+.+|+-||+||.|
T Consensus 425 I~EhY~P~~~--~d~lP~t~~g~ilsiADKlDtl 456 (548)
T PF02092_consen 425 IEEHYLPRFA--GDELPSTPIGAILSIADKLDTL 456 (548)
T ss_pred HHHHhCCCCC--CCCCCCCHHHHHHHHHHHHHHH
Confidence 9999544332 1347899999999999999976
No 58
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=96.43 E-value=0.056 Score=43.05 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCCCC-----Cch--------H----HHHHHHHHhhCC
Q 027623 24 DASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKYLR-----DPS--------E----EKIVENFLEDEG 86 (221)
Q Consensus 24 ~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~~~-----~~~--------~----~~~a~~~L~~~g 86 (221)
.+.|+.|+..+..++. . .-.+++.+||..|+|.++.... +.. . ...+.++|.+.|
T Consensus 29 El~Ya~rMt~~l~~~~---P-----~Ase~LqlAaR~QHi~RW~~PR~~yP~~r~GYl~WR~~l~~~hA~~~~~im~~~G 100 (185)
T PF13875_consen 29 ELLYAQRMTEWLARLA---P-----DASEALQLAARAQHIERWEIPRSSYPEGRAGYLQWRRALKKRHAAIAAEIMREAG 100 (185)
T ss_pred HHHHHHHHHHHHHHhC---C-----CCCHHHHHHHHHHHHHHhcCchhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5678888888877664 2 3347899999999999986322 111 0 178899999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhh
Q 027623 87 LEESKKMRILNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDA 131 (221)
Q Consensus 87 ~~~~~~~~V~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~ 131 (221)
++++.+++|..+|.....+ .+++.|+|-|+.-|-.
T Consensus 101 y~~~~i~rV~~lv~K~~lk----------~d~e~Q~LEDvacLVF 135 (185)
T PF13875_consen 101 YDEEEIDRVAALVRKEGLK----------RDPETQALEDVACLVF 135 (185)
T ss_pred CCHHHHHHHHHHHHhccCC----------CCchHHHHHhhHHHHh
Confidence 9999999999999876432 3577899999887754
No 59
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=96.42 E-value=0.06 Score=51.40 Aligned_cols=100 Identities=23% Similarity=0.184 Sum_probs=72.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhh--hccCCCCCCCchH-HHHHHHHHhhCCCCHHHHHHHHHH
Q 027623 22 SHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLH--DIGDYKYLRDPSE-EKIVENFLEDEGLEESKKMRILNI 98 (221)
Q Consensus 22 ~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLH--DIg~~~~~~~~~~-~~~a~~~L~~~g~~~~~~~~V~~~ 98 (221)
|--++.+.|+..+|..|+...+ .+...+.-||.|- |+.-.-...=++- +.+++.+....|.++ .|+.+
T Consensus 356 Gs~~dK~~Ri~~La~~la~~l~-----~~~~~~~RAa~L~KaDL~T~mV~EFpELQGiMG~~YA~~~GE~~----~VA~A 426 (682)
T PRK01233 356 GTLYDKVERIRALAGYIAEQLG-----ADAALAERAALLAKADLVTEMVGEFPELQGIMGRYYALHDGEDE----EVALA 426 (682)
T ss_pred CCHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhhhccchhhccChHhhHHHHHHHHHHCCCCH----HHHHH
Confidence 4457899999999999999887 3445567788774 3332221111232 389999999999886 68899
Q ss_pred HHHhcCCcccccccCCCCChhhhhhhhhhhhhhh
Q 027623 99 IKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAI 132 (221)
Q Consensus 99 I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~l 132 (221)
|..|-.+...+ +.-|.++.+.+|+-||+||.|
T Consensus 427 I~EhY~P~~~~--d~lP~t~~g~ilaiADKlDtL 458 (682)
T PRK01233 427 IEEHYLPRFAG--DELPSTPVGAAVALADKLDTL 458 (682)
T ss_pred HHHHhCCCCCC--CCCCCchHHHHHHHHHHHHHH
Confidence 99995544322 346899999999999999976
No 60
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=96.41 E-value=0.0092 Score=54.82 Aligned_cols=51 Identities=25% Similarity=0.284 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHHHHHHhCC-----------CCC---CCcHHHHHHHHHhhhccCCCCCCCch
Q 027623 23 HDASHVWRVRDLALSLAREEGL-----------ASN---PDSMEIVELAALLHDIGDYKYLRDPS 73 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~-----------~~~---~~d~~~l~lAalLHDIg~~~~~~~~~ 73 (221)
.++.|++.|+..++.|+...+. ..+ .....++.+|||+||||..++.-..|
T Consensus 65 tRltHSleV~~i~r~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~lveaa~L~HDiGhpPFGH~GE 129 (503)
T PRK04926 65 SRLTHSLEVQQVGRYIAKEILSRLKEQKLLEAYGLDELTGPFESIVEMACLMHDIGNPPFGHFGE 129 (503)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchHHHHHHHHHHhcCCCCCCcccHH
Confidence 5689999999999988865310 000 12257999999999999998755444
No 61
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.2 Score=47.57 Aligned_cols=100 Identities=24% Similarity=0.214 Sum_probs=72.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhh--hccCCCCCCCchH-HHHHHHHHhhCCCCHHHHHHHHHH
Q 027623 22 SHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLH--DIGDYKYLRDPSE-EKIVENFLEDEGLEESKKMRILNI 98 (221)
Q Consensus 22 ~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLH--DIg~~~~~~~~~~-~~~a~~~L~~~g~~~~~~~~V~~~ 98 (221)
|--.+++.|+-.+|..||...+ .|..-+.-||+|= |+.-...+.=++- +.+++.++...|.++ .|+.+
T Consensus 360 GTl~dKv~Ri~~iA~~ia~~l~-----~d~~~~~rAa~l~KaDL~T~mV~EFpELQGiMG~~YA~~~Ge~~----~VA~A 430 (691)
T COG0751 360 GTLADKVERIKKIAAYIAPQLG-----ADVEDADRAALLAKADLVTEMVGEFPELQGIMGEYYALHDGEDE----EVALA 430 (691)
T ss_pred ccHHHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHHhhhhhHhhhcCChhhhHHHHHHHHHHcCCCH----HHHHH
Confidence 4457899999999999999998 5777788888773 2211111111222 289999999889887 58889
Q ss_pred HHHhcCCcccccccCCCCChhhhhhhhhhhhhhh
Q 027623 99 IKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAI 132 (221)
Q Consensus 99 I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~l 132 (221)
|..|-.+...+ ..-|.++.+.+|.-||+||-|
T Consensus 431 i~EhY~Pr~~g--d~lP~t~~g~~valADKLDTL 462 (691)
T COG0751 431 IEEHYLPRFAG--DELPSTPVGAVVALADKLDTL 462 (691)
T ss_pred HHHhcCCCCCC--CCCCCchHHHHHHHHHHHHHH
Confidence 99995433221 236889999999999999965
No 62
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=95.28 E-value=0.34 Score=46.47 Aligned_cols=100 Identities=22% Similarity=0.204 Sum_probs=69.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCCCCcHHH---HHHHHHhh--hccCCCCCCCchH-HHHHHHHHhhCCCCHHHHHHH
Q 027623 22 SHDASHVWRVRDLALSLAREEGLASNPDSMEI---VELAALLH--DIGDYKYLRDPSE-EKIVENFLEDEGLEESKKMRI 95 (221)
Q Consensus 22 ~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~---l~lAalLH--DIg~~~~~~~~~~-~~~a~~~L~~~g~~~~~~~~V 95 (221)
|--++-+.|+..+|..|+...+. +... ..-||+|= |+.-.-...=++- +.+++.++...|.++ .|
T Consensus 358 Gsl~dK~~Ri~~La~~ia~~l~~-----~~~~~~~~~rAa~L~KaDL~T~mV~EFpELQGiMG~~YA~~~GE~~----~V 428 (691)
T TIGR00211 358 GTLKDKVDRISIIAGYIAQQLGA-----DENMLEHVKRAALLSKADLVTNMVYEFPELQGIMGEKYARHDGEDE----AV 428 (691)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCC-----ChhhhHHHHHHHHHHhhhccchhhccChHhhHHHHHHHHHHCCCCH----HH
Confidence 34468899999999999998863 2221 34577662 2222211111232 389999999999886 68
Q ss_pred HHHHHHhcCCcccccccCCCCChhhhhhhhhhhhhhh
Q 027623 96 LNIIKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAI 132 (221)
Q Consensus 96 ~~~I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~l 132 (221)
+.+|..|-.+...+ +.-|.++.+.+|+-||++|.|
T Consensus 429 A~AI~EhY~Pr~~~--d~lP~t~~g~ivsiADKlDtL 463 (691)
T TIGR00211 429 AVAVNEQYLPRSAG--DDLPSSLVGSVVAMADKLDTL 463 (691)
T ss_pred HHHHHHHhCCCCCC--CCCCCchHHHHHHHHHHHHHH
Confidence 89999995443322 347889999999999999976
No 63
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=95.21 E-value=0.08 Score=41.26 Aligned_cols=87 Identities=22% Similarity=0.212 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCC---CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCC--CCCCch---
Q 027623 2 ESRVRKAEKLVERSMKGNDAS---HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYK--YLRDPS--- 73 (221)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~~~---H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~--~~~~~~--- 73 (221)
...++.+...+........++ -..+|.+-.+.+|. ..| .+ .-+..||||||||... +..+..
T Consensus 6 ~~~~d~i~~~F~~~g~e~y~ge~VTq~eHaLQ~AtlAe----rdG-----a~-~~lVaaALLHDiGhl~~~~g~~ps~~~ 75 (186)
T COG4341 6 MKDGDRIAYLFLRHGDEGYSGEPVTQLEHALQCATLAE----RDG-----AD-TALVAAALLHDIGHLYADYGHTPSAAG 75 (186)
T ss_pred hhhHHHHHHHHHHccccccccCcchhhhhHHHHhHHHH----hcC-----Cc-HHHHHHHHHHhHHHHhhhcCCCccccc
Confidence 344555555555444332222 44678876655444 455 33 5688999999999863 221111
Q ss_pred -----HHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 027623 74 -----EEKIVENFLEDEGLEESKKMRILNIIKKMG 103 (221)
Q Consensus 74 -----~~~~a~~~L~~~g~~~~~~~~V~~~I~~h~ 103 (221)
..+.+..+|++++ |+ .|...|+.|-
T Consensus 76 i~d~~hee~~~~vL~~~f-~~----~v~e~vrlHv 105 (186)
T COG4341 76 IDDPFHEEFATPVLRKLF-PP----FVREPVRLHV 105 (186)
T ss_pred cchhHHHHHhHHHHHHhC-cH----HHHHHHHHHH
Confidence 1167888888764 44 4556666663
No 64
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=95.19 E-value=0.37 Score=47.82 Aligned_cols=101 Identities=21% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhh--hccCCCCCCCchH-HHHHHHHHhhCCCCHHHHHHHHHH
Q 027623 22 SHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLH--DIGDYKYLRDPSE-EKIVENFLEDEGLEESKKMRILNI 98 (221)
Q Consensus 22 ~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLH--DIg~~~~~~~~~~-~~~a~~~L~~~g~~~~~~~~V~~~ 98 (221)
|--++-+.|+..+|..|+...+. .....+.-||.|= |+.-.-...=++- +.+++.++...|.++ .|+.+
T Consensus 673 GS~~dKv~Ri~~La~~La~~l~~----~~~~~~~RAA~LsKaDLvT~MV~EFPELQGiMG~yYA~~~GE~~----~VA~A 744 (1000)
T PRK14908 673 GSLADKVERIKAHAEELAALLPL----SARETLDRAAELCKFDLVSQMVNEFPELQGIMGRYYAQRAGEPE----AVAQA 744 (1000)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCC----ChhHHHHHHHHHhhhhcccchhccChHhhHHHHHHHHHHcCCCH----HHHHH
Confidence 44568899999999999998873 2223245577662 3332211111232 289999999999887 68899
Q ss_pred HHHhcCCcccccccCCCCChhhhhhhhhhhhhhh
Q 027623 99 IKKMGFKDEIAGLANAEFSPEFGVVQDADRLDAI 132 (221)
Q Consensus 99 I~~h~~~~~~~~~~~~~~~~ea~il~DAD~LD~l 132 (221)
|..|-.+...+ +.-|.++.+.+|.-|||||.|
T Consensus 745 I~EhYlPr~ag--D~LP~s~~G~ilalADKlDTL 776 (1000)
T PRK14908 745 LGEHELPRTAG--DSLPASTTGALLSLADRLDNL 776 (1000)
T ss_pred HHHHhCCCCCC--CCCCCchHHHHHHHHHHHHHH
Confidence 99995443221 347899999999999999976
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=95.07 E-value=0.066 Score=52.21 Aligned_cols=39 Identities=33% Similarity=0.403 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCC
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDY 66 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~ 66 (221)
.+|...|+.+|..+|...|+ ..-..++.+||+|||+||.
T Consensus 677 ~eHl~~va~lA~~fa~~~gl---~~~~~~~~laGllHDlGK~ 715 (844)
T TIGR02621 677 SDHLDNVFEVAKNFVAKLGL---GDLDKAVRQAARLHDLGKQ 715 (844)
T ss_pred HHHHHHHHHHHHHHHHHcCc---hHHHHHHHHHHHhcccccC
Confidence 47999999999999999884 1123457899999999996
No 66
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=95.02 E-value=0.12 Score=44.26 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=57.4
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCCC---CC-------------Cc------h-HH----
Q 027623 23 HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYKY---LR-------------DP------S-EE---- 75 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~~---~~-------------~~------~-~~---- 75 (221)
+-|+++.+++..|..+++..|. .+.+..+++++||++|...+ .. ++ + .+
T Consensus 116 ~~w~~a~~~A~ia~~La~~~g~----~~~~~~y~~gLLh~lG~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~h 191 (289)
T COG1639 116 LFWDTAIETAMIAEGLARALGR----ADSDEAYTAGLLHNLGILVLLTDFPDHCELLDYLLALNNDELLALDEELGIFGH 191 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHccHHHHHHHhHHHHHHHHHHHHhccCcccchHHHhccccc
Confidence 5689999999999999999984 68899999999999998531 10 00 1 11
Q ss_pred -HHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 027623 76 -KIVENFLEDEGLEESKKMRILNIIKKMGF 104 (221)
Q Consensus 76 -~~a~~~L~~~g~~~~~~~~V~~~I~~h~~ 104 (221)
.++.-+|+.++||.+ ++.+|.+|..
T Consensus 192 ~~Iga~llr~W~fp~~----l~e~i~~~~~ 217 (289)
T COG1639 192 ASIGAYLLRRWNFPDD----LIEAIRFHHN 217 (289)
T ss_pred hHHHHHHHHHcCCCHH----HHHHHHHhhc
Confidence 577888999999985 5668888754
No 67
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=94.27 E-value=0.043 Score=45.68 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHHHHHHHHhCCC--CCCCcHHHHHHHHHhhhccCC
Q 027623 23 HDASHVWRVRDLALSLAREEGLA--SNPDSMEIVELAALLHDIGDY 66 (221)
Q Consensus 23 H~~~H~~rV~~~a~~ia~~~~~~--~~~~d~~~l~lAalLHDIg~~ 66 (221)
|++.|+.-|.+.+..+....+.. .++.+...+.+||+.||+|..
T Consensus 2 HN~~Ha~dV~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~Hp 47 (237)
T PF00233_consen 2 HNFRHAADVLQFVYYLLSNGGLREYLSPLEIFALLIAALCHDVDHP 47 (237)
T ss_dssp SSHHHHHHHHHHHHHHHHHGGGGTTS-HHHHHHHHHHHHHTTTT-S
T ss_pred CCHHHHHHHHHHHHHHHHccCccccCCHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999998765432 244577889999999999986
No 68
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=94.15 E-value=0.21 Score=47.63 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=54.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhCCC--CCCCcHHHHHHHHHhhhccCCCCCC------Cch-----------HH---H
Q 027623 19 NDASHDASHVWRVRDLALSLAREEGLA--SNPDSMEIVELAALLHDIGDYKYLR------DPS-----------EE---K 76 (221)
Q Consensus 19 ~~~~H~~~H~~rV~~~a~~ia~~~~~~--~~~~d~~~l~lAalLHDIg~~~~~~------~~~-----------~~---~ 76 (221)
..+-|+|.|+.-|++..-.+...-.+. .++.+...+.+||+.||+...-+.+ +++ |. .
T Consensus 427 ~v~YHNw~HAf~VaQ~m~~lL~t~~L~~~fTdlEiLalliAalcHDlDHrGtNN~f~iks~s~LA~lY~~~SvLE~HH~~ 506 (707)
T KOG3689|consen 427 NVPYHNWRHAFDVAQAMFALLKTPKLQNKFTDLEILALLIAALCHDLDHRGTNNSYLIKSNSPLAQLYNDSSVLENHHFA 506 (707)
T ss_pred CCcchhHHHHHHHHHHHHHHHhchhHHhhcChHHHHHHHHHHHHccCCCCCCCcHHHHhcCCHHHHHhCCccHHHHHHHH
Confidence 347899999999999998887653221 2445677888999999999863211 111 11 6
Q ss_pred HHHHHHhhCC------CCHHHHHHHHHHH
Q 027623 77 IVENFLEDEG------LEESKKMRILNII 99 (221)
Q Consensus 77 ~a~~~L~~~g------~~~~~~~~V~~~I 99 (221)
.+..+|++.| +|......|.+.|
T Consensus 507 ~~~~lLqe~~~nIfsnLs~~~~~~~~~~i 535 (707)
T KOG3689|consen 507 QAFKLLQEEGCNIFSNLSKKQYQQIRKLI 535 (707)
T ss_pred HHHHHHhccccchhhcCCHHHHHHHHHHH
Confidence 7888888763 5666555444443
No 69
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=94.12 E-value=0.1 Score=45.57 Aligned_cols=64 Identities=27% Similarity=0.274 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCC-----ChHHHHHHHHHHHHHHHHhCCC--CCC--------CcHHHHHHHHHhhhccCC
Q 027623 3 SRVRKAEKLVERSMKGNDASH-----DASHVWRVRDLALSLAREEGLA--SNP--------DSMEIVELAALLHDIGDY 66 (221)
Q Consensus 3 ~~i~~~~~~~~~~~~~~~~~H-----~~~H~~rV~~~a~~ia~~~~~~--~~~--------~d~~~l~lAalLHDIg~~ 66 (221)
+.|++..+||...=++...-| -+.|++.|+.+|.++++..-++ ..+ .=...+.+||||||||+.
T Consensus 41 ~~l~r~A~~vQ~LPASe~hhha~~GGll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~ 119 (327)
T PF07514_consen 41 PPLERYAEFVQLLPASESHHHAGPGGLLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKP 119 (327)
T ss_pred HHHHHHHHHHhcCCCCCCCCcCCCCcHHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCcc
Confidence 456666777766544332222 3799999999999999754332 111 113589999999999993
No 70
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.43 E-value=1.5 Score=40.49 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=57.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCC---CCCCCcHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHhh---CCCCHHHHHHH
Q 027623 22 SHDASHVWRVRDLALSLAREEGL---ASNPDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLED---EGLEESKKMRI 95 (221)
Q Consensus 22 ~H~~~H~~rV~~~a~~ia~~~~~---~~~~~d~~~l~lAalLHDIg~~~~~~~~~~~~~a~~~L~~---~g~~~~~~~~V 95 (221)
..+..|..+|...|..+..+... .....+...+..||.|||||....+..+. .-+..++.. .||+..+...+
T Consensus 325 ~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~~~~~~l~~Aa~Lh~iG~~i~~~~~~--~hsayiI~~s~l~Gf~~~e~~~l 402 (492)
T COG0248 325 LIDLAQAKRVAKLALELFDQLLALLKIDEEAEERLLEAAAMLHEIGLNISHSGHH--KHSAYIIRNSDLPGFSHEERLLL 402 (492)
T ss_pred hhhHHhHhhHHHHHHHHHHHhhhccccCCChHHHHHHHHHHHHHhccccCcccHH--HHHHHHHHcCCCCCCCHHHHHHH
Confidence 35778999999999998876521 01112233389999999999975333222 445555544 48999999999
Q ss_pred HHHHHHhcCC
Q 027623 96 LNIIKKMGFK 105 (221)
Q Consensus 96 ~~~I~~h~~~ 105 (221)
..++..|+-.
T Consensus 403 A~l~~~~~~~ 412 (492)
T COG0248 403 ALLARYHRKA 412 (492)
T ss_pred HHHHHHHhcC
Confidence 9999999754
No 71
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=92.78 E-value=2.5 Score=40.82 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhc-CCC-CC-CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCC
Q 027623 4 RVRKAEKLVERSMK-GND-AS-HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDY 66 (221)
Q Consensus 4 ~i~~~~~~~~~~~~-~~~-~~-H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~ 66 (221)
++.++..|+..... +.+ ++ --+.|..+|+..... .+ .|.+ ..+||||||+.-.
T Consensus 22 ~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~----l~-----~D~~-ti~AaLLHDvvED 77 (702)
T PRK11092 22 RLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAE----MR-----LDYE-TLMAALLHDVIED 77 (702)
T ss_pred HHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHH----cC-----CCHH-HHHHhcccchhhh
Confidence 46667777754433 222 22 226798888877653 34 5665 4699999999875
No 72
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=90.82 E-value=0.68 Score=36.14 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=35.2
Q ss_pred HHhcCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCC
Q 027623 14 RSMKGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDY 66 (221)
Q Consensus 14 ~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~ 66 (221)
......||.-+.--+.-.++.|..|-+... |.+-+.++||+||+|+.
T Consensus 84 ~~vDESDPDlDepni~Ha~QtAE~iR~~~P------d~dWlHLtaLiHDLGKv 130 (204)
T KOG1573|consen 84 EVVDESDPDLDEPNIQHALQTAEAIRKDYP------DEDWLHLTALIHDLGKV 130 (204)
T ss_pred hhhcccCCCCchHHHHHHHHHHHHHHHhCC------CccHHHHHHHHHHHHHH
Confidence 344445677776666667788888877664 56789999999999986
No 73
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=87.25 E-value=0.27 Score=46.96 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=12.5
Q ss_pred HHHHHHhhhccCCCC
Q 027623 54 VELAALLHDIGDYKY 68 (221)
Q Consensus 54 l~lAalLHDIg~~~~ 68 (221)
+.+||||||||+...
T Consensus 1 l~~~aLLHDIGK~~~ 15 (648)
T TIGR02578 1 LAVAALLHDIGKVIR 15 (648)
T ss_pred Cchhhhhhccchhhh
Confidence 358999999999754
No 74
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=86.71 E-value=1.5 Score=36.59 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=30.5
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCC
Q 027623 17 KGNDASHDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDY 66 (221)
Q Consensus 17 ~~~~~~H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~ 66 (221)
...||.-++.-+.-.++.|..|-+..+ +++=+.+.+|+||+|+.
T Consensus 53 DeSDPD~d~~~i~H~lQTAEaiR~d~~------~~dW~~LtGLiHDLGKv 96 (253)
T PF05153_consen 53 DESDPDTDLPQIQHALQTAEAIRRDHP------DPDWMQLTGLIHDLGKV 96 (253)
T ss_dssp -TT-TT--S-HHHHHHHHHHHHHHHST------T-HHHHHHHHHTTGGGH
T ss_pred cCccCCCchhHHHHHHHHHHHHHHhCC------Ccchhhheehhccchhh
Confidence 345677777777777888888876655 67889999999999984
No 75
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=86.22 E-value=8.1 Score=37.29 Aligned_cols=32 Identities=31% Similarity=0.223 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCC
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDY 66 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~ 66 (221)
+.|..+|+..... .+ .|.+ ..+||||||+.-.
T Consensus 21 i~Hpl~VA~iL~~----~~-----~D~~-~i~AaLLHDvvED 52 (683)
T TIGR00691 21 IIHPLAVALILAE----LG-----MDEE-TVCAALLHDVIED 52 (683)
T ss_pred HHHHHHHHHHHHH----hC-----CCHH-HHHHHhccchHhc
Confidence 6799999886553 34 4554 5789999999865
No 76
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=80.41 E-value=42 Score=32.84 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCC
Q 027623 4 RVRKAEKLVERSMKGNDASHD-ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDY 66 (221)
Q Consensus 4 ~i~~~~~~~~~~~~~~~~~H~-~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~ 66 (221)
.|.++-.|+.....+..+|-. +.|-..|+..... .+ .|. ...+||||||+.-.
T Consensus 34 ~i~~A~~~a~~~H~gr~sGepyi~Hpl~vA~iLa~----~~-----~D~-~ti~AaLLHD~ved 87 (743)
T PRK10872 34 RLAETWAYCLQQTQGHPDASLLLWRGVEMVEILST----LS-----MDI-DTLRAALLFPLADA 87 (743)
T ss_pred HHHHHHHHHHHhccCCCCCChhhhhHHHHHHHHHH----cC-----CCH-HHHHHHHhhhhHhc
Confidence 455666666443332222212 5688887766543 34 454 46789999999864
No 77
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=80.07 E-value=12 Score=33.83 Aligned_cols=72 Identities=26% Similarity=0.418 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhccCCCCCCCchH-------H--HHHHHHHhhCCCCHHHHHHHHHHHHHhc-CCcccccccCCCCChhhh
Q 027623 52 EIVELAALLHDIGDYKYLRDPSE-------E--KIVENFLEDEGLEESKKMRILNIIKKMG-FKDEIAGLANAEFSPEFG 121 (221)
Q Consensus 52 ~~l~lAalLHDIg~~~~~~~~~~-------~--~~a~~~L~~~g~~~~~~~~V~~~I~~h~-~~~~~~~~~~~~~~~ea~ 121 (221)
.-+..||+|||+....... .++ + .+++++-..-+++....... ..|.... |.. -.+.-|.
T Consensus 118 s~Vv~AaiLHDVVDDt~~S-~eeI~~~FG~gVa~LV~EvtddKnL~K~eRk~l-~qiet~~~fya--------k~s~RAv 187 (543)
T KOG1157|consen 118 STVVVAAILHDVVDDTFMS-YEEILRHFGTGVADLVEEVTDDKNLSKLERKNL-TQIETVEMFYA--------KASARAV 187 (543)
T ss_pred hHHHHHHHHHHHHhhccCC-HHHHHHHhCccHHHHHHHHhcccchhHHHHHHH-HHHHHHHHHHH--------HHHHHHH
Confidence 3467899999999864221 111 1 45566655555554443333 2333221 111 1234588
Q ss_pred hhhhhhhhhhhh
Q 027623 122 VVQDADRLDAIG 133 (221)
Q Consensus 122 il~DAD~LD~lG 133 (221)
++.-||+||.+-
T Consensus 188 LIkLADKLdNMR 199 (543)
T KOG1157|consen 188 LIKLADKLDNMR 199 (543)
T ss_pred HHHHHHHHhhhh
Confidence 999999999874
No 78
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=78.50 E-value=4.2 Score=36.51 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhccCCCCCCCchHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC
Q 027623 52 EIVELAALLHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGF 104 (221)
Q Consensus 52 ~~l~lAalLHDIg~~~~~~~~~~~~~a~~~L~~~g~~~~~~~~V~~~I~~h~~ 104 (221)
.+..+|++|||+|. ..+.++|+++.+|...++.|..+|..|..
T Consensus 249 ~~~~~a~ll~~~~~----------~~~~~~l~rl~ls~~~~~~i~~li~~~~~ 291 (394)
T PRK13299 249 SEQAWAALLISLKI----------ENIKSFLKAWKLSNKFIKDVVKLLALYAL 291 (394)
T ss_pred HHHHHHHHHHhcCH----------HHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Confidence 45789999999974 46899999999999999999999988854
No 79
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=77.23 E-value=24 Score=34.10 Aligned_cols=33 Identities=30% Similarity=0.222 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCC
Q 027623 25 ASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYK 67 (221)
Q Consensus 25 ~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~ 67 (221)
+.|-..|+.....+. .| ....+||||||+.-..
T Consensus 50 i~Hpl~Va~iLael~---------~d-~~tl~AaLLHD~vEDt 82 (701)
T COG0317 50 ISHPLEVAEILAELH---------MD-METLAAALLHDTIEDT 82 (701)
T ss_pred hhCHHHHHHHHHHcc---------CC-HHHHHHHHccchHhcC
Confidence 456666665554432 23 4567799999999764
No 80
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=69.41 E-value=2.7 Score=32.22 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=28.5
Q ss_pred HHHHHHhcCC-C-CC-CChHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHhhhccCCC
Q 027623 10 KLVERSMKGN-D-AS-HDASHVWRVRDLALSLAREEGLASNPDSMEIVELAALLHDIGDYK 67 (221)
Q Consensus 10 ~~~~~~~~~~-~-~~-H~~~H~~rV~~~a~~ia~~~~~~~~~~d~~~l~lAalLHDIg~~~ 67 (221)
+|+.....+. + .+ --+.|...|+.....+ + .| +.+.+||||||+....
T Consensus 3 ~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~----~-----~d-~~~i~aalLHD~ied~ 53 (153)
T PF13328_consen 3 AFAAEAHAGQRRKSGEPYISHPLEVAEILAEL----G-----LD-EETIAAALLHDVIEDT 53 (153)
T ss_dssp HHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS-------------HHHHHHHHHTTHHHHS
T ss_pred HHHHHHHhcccCCCCCcHHHHHHHHHHHHHHc----C-----CC-HHHHhhheeecHHHhc
Confidence 4555555422 1 12 2368999999876544 3 34 3478899999998753
No 81
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=64.98 E-value=1.7e+02 Score=29.99 Aligned_cols=104 Identities=18% Similarity=0.319 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhC--------CC----------CCCCcHHHHHHHHHhhhccCCCCCCC-------chHH-
Q 027623 22 SHDASHVWRVRDLALSLAREEG--------LA----------SNPDSMEIVELAALLHDIGDYKYLRD-------PSEE- 75 (221)
Q Consensus 22 ~H~~~H~~rV~~~a~~ia~~~~--------~~----------~~~~d~~~l~lAalLHDIg~~~~~~~-------~~~~- 75 (221)
-|++.|++|++.+|..+.+... +. .++.+..-+.+|-+|-=+|+....+. |+..
T Consensus 276 ~HGLAHTlRtmayaevmvEearkak~rge~l~~~kdgrtiAdvTpeElkKI~IaqaFfV~GRddE~S~~d~Y~~Yhe~s~ 355 (1439)
T PF12252_consen 276 NHGLAHTLRTMAYAEVMVEEARKAKLRGETLGTFKDGRTIADVTPEELKKIMIAQAFFVAGRDDEASGYDAYAKYHEQSA 355 (1439)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhhccccccccccCCCchhcCCHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHH
Confidence 3999999999999999987321 10 13334566788888888898643221 2222
Q ss_pred HHHHHHHhhCC-------C-CHHHHHHHHHHHHH--hcCCcccccccCCCCChhhhhhhhhhhhhhhhhhHHHHHH
Q 027623 76 KIVENFLEDEG-------L-EESKKMRILNIIKK--MGFKDEIAGLANAEFSPEFGVVQDADRLDAIGAIGIARCF 141 (221)
Q Consensus 76 ~~a~~~L~~~g-------~-~~~~~~~V~~~I~~--h~~~~~~~~~~~~~~~~ea~il~DAD~LD~lGa~gi~R~~ 141 (221)
..-.++.+..- | +++++..-..+|.. |.| ..+|..-++..+-.+| .+||+
T Consensus 356 ~aF~kyv~~N~s~li~~iFkde~ev~~yA~iI~Dk~h~w----------~~spA~vLI~~~HmvD------LmR~k 415 (1439)
T PF12252_consen 356 KAFLKYVKDNKSTLIPHIFKDEKEVDFYARIIEDKNHDW----------DSSPAHVLIHQGHMVD------LMRCK 415 (1439)
T ss_pred HHHHHHHHhCcccccchhcCCHHHHHHHHHHHHccCCCC----------CCChHHHHHHhhhhhh------hhccC
Confidence 33344444322 5 47888888888864 333 2456667777888877 45763
No 82
>COG2254 Predicted HD superfamily hydrolase, possibly a nuclease [DNA replication, recombination, and repair]
Probab=63.69 E-value=7.1 Score=32.37 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHhhhccCCC--C---CCC-----chHH--HHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q 027623 49 DSMEIVELAALLHDIGDYK--Y---LRD-----PSEE--KIVENFLEDEGLEESKKMRILNIIKKMG 103 (221)
Q Consensus 49 ~d~~~l~lAalLHDIg~~~--~---~~~-----~~~~--~~a~~~L~~~g~~~~~~~~V~~~I~~h~ 103 (221)
...+++.+|..|||||+.- | ..+ |+-. -.+.+.++..|-.. .+..|.-++..|.
T Consensus 49 ~v~~~vk~AiilHDiGKa~~~yQ~~~~~~~~~~HE~~Say~~~~~~e~~~d~~-~~~~Val~~~~H~ 114 (230)
T COG2254 49 KVEELVKLAIILHDIGKASEAYQKGRGNDCFYYHELVSAYFAYEVLEPLGDKE-LAFEVALALMLHH 114 (230)
T ss_pred HHHHHHHHeeEEeechhhHHHHHHhcccCcccchhhHHHHHHHHHHhhccccc-cchhHHHHHHHHH
Confidence 4578999999999999962 1 122 5533 45788888766443 3344555555554
No 83
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=53.86 E-value=18 Score=23.90 Aligned_cols=20 Identities=55% Similarity=0.964 Sum_probs=15.9
Q ss_pred CHHHHHHHH---HHHHHHHHHHH
Q 027623 192 TEAGQRRAE---KRHKFMEEFLM 211 (221)
Q Consensus 192 T~~~r~~a~---~r~~~~~~f~~ 211 (221)
|+.|+++|+ +|++.+..|+.
T Consensus 1 T~~G~~~A~~i~~rH~~le~fl~ 23 (71)
T PF02742_consen 1 TEEGREIAERILRRHRILEEFLV 23 (71)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Confidence 788999985 58899999984
No 84
>PF03925 SeqA: SeqA protein; InterPro: IPR005621 The binding of SeqA protein to hemimethylated GATC sequences is important in the negative modulation of chromosomal initiation at oriC, and in the formation of SeqA foci necessary for Escherichia coli chromosome segregation []. SeqA tetramers are able to aggregate or multimerize in a reversible, concentration-dependent manner []. Apart from its function in the control of DNA replication, SeqA may also be a specific transcription factor []. The C-terminal domain binds DNA, binding to fully methylated and hemimethylated GATC sequences at oriC. The structure of the C-terminal domain consists of seven alpha-helices and three-stranded beta-sheet.; GO: 0003677 DNA binding, 0032297 negative regulation of DNA-dependent DNA replication initiation; PDB: 3FMT_A 1J3E_A 1XRX_D 1IU3_C 1LRR_D.
Probab=51.21 E-value=13 Score=29.93 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=19.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH
Q 027623 76 KIVENFLEDEGLEESKKMRILNII 99 (221)
Q Consensus 76 ~~a~~~L~~~g~~~~~~~~V~~~I 99 (221)
.+..++|..+|||++.++.||..|
T Consensus 167 ~Mle~vM~~mg~p~~lie~V~~~I 190 (190)
T PF03925_consen 167 SMLEEVMQSMGYPAELIEKVCGTI 190 (190)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTT-
T ss_pred HHHHHHHHHhCCCHHHHHHHHccC
Confidence 688999999999999999998754
No 85
>PRK11187 replication initiation regulator SeqA; Provisional
Probab=49.64 E-value=17 Score=28.97 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=21.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH
Q 027623 76 KIVENFLEDEGLEESKKMRILNII 99 (221)
Q Consensus 76 ~~a~~~L~~~g~~~~~~~~V~~~I 99 (221)
.+..+++..+|||++.++.||..|
T Consensus 159 ~ml~~vm~~mg~p~~liekV~~~i 182 (182)
T PRK11187 159 SMLEHVMQSMGFPAELIEKVCGTI 182 (182)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhcC
Confidence 688999999999999999998754
No 86
>PF13735 tRNA_NucTran2_2: tRNA nucleotidyltransferase domain 2 putative; PDB: 1MIY_A 1MIV_B 1MIW_B.
Probab=46.34 E-value=45 Score=25.03 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhccCCCCCCCchHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCC
Q 027623 52 EIVELAALLHDIGDYKYLRDPSEEKIVENFLEDEGLEESKKMRILNIIKKMGFK 105 (221)
Q Consensus 52 ~~l~lAalLHDIg~~~~~~~~~~~~~a~~~L~~~g~~~~~~~~V~~~I~~h~~~ 105 (221)
.....|.+++=++... ..++.+|+++.+|...++.|+.+|..|...
T Consensus 6 ~~~~wa~l~~~~~~~~--------~~a~~~L~~lk~Sn~~i~~v~~l~~~~~~~ 51 (149)
T PF13735_consen 6 EEEAWALLLLLLGLDP--------EEAREILKRLKFSNKEIKRVLSLVELHMRL 51 (149)
T ss_dssp HHHHHHHHHHHTT-----------S-HHHHHHHTT--HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhccHH--------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3455566665555321 469999999999999999999999999653
No 87
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=44.32 E-value=43 Score=21.33 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=26.2
Q ss_pred cchhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027623 185 KLKDLMKTEAGQRRAEKRHKFMEEFLMEFYEEWD 218 (221)
Q Consensus 185 ~l~~~~~T~~~r~~a~~r~~~~~~f~~~~~~E~~ 218 (221)
.+...+.|+.|+++..+.-..+.........+|.
T Consensus 24 ~i~~FY~Sp~Gqk~~~~~~~~~~~~~~~~~~~~~ 57 (64)
T PF09832_consen 24 AILAFYESPLGQKIVAKEPALMQASMQPAMQAWM 57 (64)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHCCHHhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3446677999999999999999998885555553
No 88
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=40.77 E-value=14 Score=37.31 Aligned_cols=16 Identities=50% Similarity=0.675 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhccCC
Q 027623 51 MEIVELAALLHDIGDY 66 (221)
Q Consensus 51 ~~~l~lAalLHDIg~~ 66 (221)
.-+..+||||||+|+.
T Consensus 113 ~lLa~~AgL~HD~GKA 128 (1110)
T TIGR02562 113 SLLAGLAGLLHDIGKA 128 (1110)
T ss_pred HHHHHHHHHhhccccc
Confidence 3577889999999996
No 89
>PF07087 DUF1353: Protein of unknown function (DUF1353); InterPro: IPR010767 This entry is represented by Campylobacter phage CGC-2007, Cje0229. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical phage and bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=40.07 E-value=18 Score=25.67 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=28.2
Q ss_pred HHHHHHHhhhccCCCC---CCCchHH-HHHHHHHhhCCCCHHHHH
Q 027623 53 IVELAALLHDIGDYKY---LRDPSEE-KIVENFLEDEGLEESKKM 93 (221)
Q Consensus 53 ~l~lAalLHDIg~~~~---~~~~~~~-~~a~~~L~~~g~~~~~~~ 93 (221)
--..||.+||--+... ..+..+. .+-++.|...|++.-...
T Consensus 45 ~y~~AavvHD~l~~~~~~~~~~r~~aD~iF~~am~~~Gv~~~r~~ 89 (95)
T PF07087_consen 45 KYLKAAVVHDYLYSRGNDRGRSRKEADRIFREAMRELGVSKFRAW 89 (95)
T ss_pred chhhHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHhCCCHHHhh
Confidence 4667999999988653 1222333 778888889998875543
No 90
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=37.78 E-value=69 Score=22.90 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=27.6
Q ss_pred ccccHHHHHHHHHhcchhhcCCHHHHHHHHHHHHHHHHHH
Q 027623 171 EEQTTVNHFHEKLLKLKDLMKTEAGQRRAEKRHKFMEEFL 210 (221)
Q Consensus 171 ~~~~~i~hf~ekll~l~~~~~T~~~r~~a~~r~~~~~~f~ 210 (221)
++....+-||..++.||..-.+++.| ..-.+.|+.|-
T Consensus 14 ~~vdlydAF~Q~l~~LP~la~S~~~K---D~I~q~m~~F~ 50 (120)
T PRK15321 14 GDVDLYDAFYQRLLALPESASSETLK---DSIYQEMNAFK 50 (120)
T ss_pred CcchHHHHHHHHHHhCCcccCcHHHH---HHHHHHHHHhC
Confidence 44566778999999999988888877 45556666664
No 91
>PF13487 HD_5: HD domain; PDB: 3TMD_A 3TM8_B 3TMC_A 3TMB_B.
Probab=32.05 E-value=82 Score=20.11 Aligned_cols=24 Identities=17% Similarity=0.193 Sum_probs=17.4
Q ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHHHhc
Q 027623 76 KIVENFLEDEG-LEESKKMRILNIIKKMG 103 (221)
Q Consensus 76 ~~a~~~L~~~g-~~~~~~~~V~~~I~~h~ 103 (221)
..+.++|++.+ +++ .|..+|.+|.
T Consensus 16 ~~~~~~l~~~~~l~~----~v~~~i~~hh 40 (64)
T PF13487_consen 16 EYGAELLSQIPRLSP----EVADIILQHH 40 (64)
T ss_dssp HHHHHHHTT-TTS-H----HHHHHHHHTT
T ss_pred HHHHHHHHcchhhHH----HHHHHHHHhc
Confidence 67889998876 665 6778998884
No 92
>COG1353 Predicted CRISPR-associated polymerase [Defense mechanisms]
Probab=30.54 E-value=26 Score=34.49 Aligned_cols=18 Identities=50% Similarity=0.894 Sum_probs=15.1
Q ss_pred cHHHHHHHHHhhhccCCC
Q 027623 50 SMEIVELAALLHDIGDYK 67 (221)
Q Consensus 50 d~~~l~lAalLHDIg~~~ 67 (221)
+...+.+||||||+|+..
T Consensus 4 ~~~~~~i~aLLHD~gk~~ 21 (799)
T COG1353 4 EFEELKIAALLHDIGKFT 21 (799)
T ss_pred HHHHHHHHHHhcCCchhh
Confidence 456789999999999764
No 93
>PRK05427 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=27.52 E-value=1.3e+02 Score=25.87 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=30.0
Q ss_pred cHHHHHHHHHhhhccCCCCCCCchHH-HHHHHHHhhCCCCHHH
Q 027623 50 SMEIVELAALLHDIGDYKYLRDPSEE-KIVENFLEDEGLEESK 91 (221)
Q Consensus 50 d~~~l~lAalLHDIg~~~~~~~~~~~-~~a~~~L~~~g~~~~~ 91 (221)
+..-+.++|++-|+|..++....+.. +.+..+++..|++...
T Consensus 136 ~iA~~L~~gIltDT~~F~~~~tt~~d~~~a~~L~~~~g~d~~~ 178 (308)
T PRK05427 136 EIAGLMLSAILSDTLLFKSPTTTEQDKAAAEELAEIAGVDIEA 178 (308)
T ss_pred HHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 45677889999999999865544444 6666666567886654
No 94
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=26.60 E-value=83 Score=24.09 Aligned_cols=64 Identities=22% Similarity=0.358 Sum_probs=35.1
Q ss_pred hhhhhHHHHHH-hhhcccCCccCCCCCCCCCcccHHHhhhhccccHHHHHHHHHhcc------h-hhcCCHHHHHHHHHH
Q 027623 131 AIGAIGIARCF-TFGGSRNRVLHDPAIKPRSDVSKEQYMKKEEQTTVNHFHEKLLKL------K-DLMKTEAGQRRAEKR 202 (221)
Q Consensus 131 ~lGa~gi~R~~-~y~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~hf~ekll~l------~-~~~~T~~~r~~a~~r 202 (221)
.=|.+||.|.. .|+|..++.. -|.. + ..+..+.+...+..|-+. + .++-|+.||.+-.+-
T Consensus 64 i~gpvGi~rL~t~YGg~k~rG~-rP~~----------~-~~gsgsI~RkilqqLE~~G~V~k~~~GR~ltp~GrsllD~~ 131 (147)
T COG2238 64 IDGPVGIERLRTAYGGRKNRGS-RPEK----------F-RKGSGSIIRKVLQQLEKAGLVEKTPKGRVLTPKGRSLLDRI 131 (147)
T ss_pred hcCchhHHHHHHHHCccccCCC-Cchh----------h-hcCCchHHHHHHHHHHHCCceeecCCCceeCccchhHHHHH
Confidence 33889999975 4888776642 1211 1 223344444444443322 2 567788888776655
Q ss_pred HHHH
Q 027623 203 HKFM 206 (221)
Q Consensus 203 ~~~~ 206 (221)
+..+
T Consensus 132 a~ei 135 (147)
T COG2238 132 ATEI 135 (147)
T ss_pred HHHH
Confidence 4433
No 95
>KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms]
Probab=23.85 E-value=1.8e+02 Score=26.90 Aligned_cols=47 Identities=23% Similarity=0.226 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCC--CCCCcHHHHHHHHHhhhccCC
Q 027623 20 DASHDASHVWRVRDLALSLAREEGLA--SNPDSMEIVELAALLHDIGDY 66 (221)
Q Consensus 20 ~~~H~~~H~~rV~~~a~~ia~~~~~~--~~~~d~~~l~lAalLHDIg~~ 66 (221)
..-|+-.|.--|+.....+...+... .+..|.....+||-.||+...
T Consensus 501 NaYHNaTHAADVLhATaFFL~kerV~g~ldeld~VAALiAAaVHDlDHP 549 (775)
T KOG1229|consen 501 NAYHNATHAADVLHATAFFLDKERVAGHLDELDAVAALIAAAVHDLDHP 549 (775)
T ss_pred ccccccchHHHHHHHHHHhcCCchhhcccchHHHHHHHHHHHHhccCCC
Confidence 45599999999997766655443321 234566778889999999765
No 96
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=23.56 E-value=1.7e+02 Score=17.42 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=19.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH
Q 027623 77 IVENFLEDEGLEESKKMRILNIIKK 101 (221)
Q Consensus 77 ~a~~~L~~~g~~~~~~~~V~~~I~~ 101 (221)
.+..-|..+||++.++..+..-+..
T Consensus 5 d~~~AL~~LGy~~~e~~~av~~~~~ 29 (47)
T PF07499_consen 5 DALEALISLGYSKAEAQKAVSKLLE 29 (47)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhc
Confidence 4667788999999988887777765
No 97
>COG3057 SeqA Negative regulator of replication initiationR [DNA replication, recombination, and repair]
Probab=21.69 E-value=71 Score=24.72 Aligned_cols=23 Identities=4% Similarity=0.192 Sum_probs=20.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHH
Q 027623 76 KIVENFLEDEGLEESKKMRILNI 98 (221)
Q Consensus 76 ~~a~~~L~~~g~~~~~~~~V~~~ 98 (221)
.+...++.+.+||++.|+.||.-
T Consensus 158 ~M~e~~MqsM~fP~~liekV~~~ 180 (181)
T COG3057 158 SMIEHIMQSMQFPAELIEKVCGT 180 (181)
T ss_pred HHHHHHHHHccCCHHHHHHHhcc
Confidence 68889999999999999999864
No 98
>KOG3688 consensus Cyclic GMP phosphodiesterase [Signal transduction mechanisms]
Probab=21.29 E-value=56 Score=29.87 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=36.0
Q ss_pred HhcCCCCCCChHHHHHHHHHHHHHHHHhCCCC--CCCcHHHHHHHHHhhhccCC
Q 027623 15 SMKGNDASHDASHVWRVRDLALSLAREEGLAS--NPDSMEIVELAALLHDIGDY 66 (221)
Q Consensus 15 ~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~~~--~~~d~~~l~lAalLHDIg~~ 66 (221)
|..-..|-|+.-|..-|.+....+....|+.. +......+.+||++||.-..
T Consensus 211 y~k~knPyhn~~haadVtqt~H~~l~~Tgim~~Lt~LEllA~~faAaiHDYeHt 264 (554)
T KOG3688|consen 211 YSKYKNPYHNLIHAADVTQTVHYHLLHTGIMNWLTELELLALLFAAAIHDYEHT 264 (554)
T ss_pred ccCCCCCccchhhhhhcccCchHHhhhhhHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 33334688999999999887777766655421 12345567789999997664
No 99
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=20.61 E-value=1.8e+02 Score=20.30 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 027623 192 TEAGQRRAEKRHKFMEEFLMEFYE 215 (221)
Q Consensus 192 T~~~r~~a~~r~~~~~~f~~~~~~ 215 (221)
|+.||+..++.....+.|.+.+..
T Consensus 74 T~~Gr~~l~~~~~~~~~~~~~i~~ 97 (100)
T TIGR03433 74 TAAGRKQLAAETESWARLSAAIAR 97 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888777654
No 100
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=20.06 E-value=1.4e+02 Score=19.44 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=18.5
Q ss_pred HHHHHHHHhcchhhcCCHHH-------HHHHHHHHHHHHHHHHH
Q 027623 176 VNHFHEKLLKLKDLMKTEAG-------QRRAEKRHKFMEEFLME 212 (221)
Q Consensus 176 i~hf~ekll~l~~~~~T~~~-------r~~a~~r~~~~~~f~~~ 212 (221)
..|| |||.++ |..- +++.+-|..|+.-++..
T Consensus 24 ~~H~-Ekl~ki-----tK~p~El~~i~~kl~~~R~~FLn~~v~~ 61 (62)
T PF06034_consen 24 SQHW-EKLKKI-----TKNPKELQEIEKKLQELRQNFLNFGVNN 61 (62)
T ss_pred HHHH-HHHHhc-----cCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455 787766 3333 56666677666665543
Done!