Query 027626
Match_columns 221
No_of_seqs 173 out of 1074
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:45:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02757 sirohydrochlorine fer 99.9 5.1E-24 1.1E-28 176.8 12.8 99 122-220 9-113 (154)
2 cd03415 CbiX_CbiC Archaeal sir 99.9 3.8E-23 8.3E-28 166.5 11.2 93 127-220 1-107 (125)
3 cd03416 CbiX_SirB_N Sirohydroc 99.9 1.4E-22 3.1E-27 154.0 11.1 93 128-220 1-99 (101)
4 PRK00923 sirohydrochlorin coba 99.9 1.1E-22 2.5E-27 160.8 10.8 95 126-220 1-108 (126)
5 cd03414 CbiX_SirB_C Sirohydroc 99.8 7.6E-21 1.6E-25 147.7 11.2 93 127-220 1-98 (117)
6 PRK02395 hypothetical protein; 99.8 3.4E-21 7.4E-26 171.9 9.1 162 40-220 60-241 (279)
7 PRK05782 bifunctional sirohydr 99.8 9.6E-21 2.1E-25 174.4 11.6 96 124-220 4-113 (335)
8 PF01903 CbiX: CbiX; InterPro 99.8 3.7E-21 8E-26 146.7 6.7 86 134-220 1-92 (105)
9 cd03413 CbiK_C Anaerobic cobal 99.8 3.7E-20 8.1E-25 144.3 8.5 79 127-208 1-79 (103)
10 cd03412 CbiK_N Anaerobic cobal 99.8 1.3E-18 2.8E-23 139.5 11.0 93 127-220 1-108 (127)
11 PRK02395 hypothetical protein; 99.8 7.5E-19 1.6E-23 156.9 9.6 91 126-220 1-108 (279)
12 cd03409 Chelatase_Class_II Cla 99.7 1.5E-17 3.3E-22 125.0 10.3 83 128-210 1-84 (101)
13 COG2138 Sirohydrochlorin ferro 99.7 9.5E-18 2.1E-22 148.7 6.1 85 126-210 2-86 (245)
14 COG2138 Sirohydrochlorin ferro 99.3 7.7E-13 1.7E-17 117.5 4.0 152 40-219 64-220 (245)
15 PF06180 CbiK: Cobalt chelatas 99.3 3.4E-12 7.4E-17 114.4 6.5 81 124-207 139-219 (262)
16 cd00419 Ferrochelatase_C Ferro 99.0 2.5E-09 5.4E-14 86.9 10.5 95 125-219 17-132 (135)
17 COG4822 CbiK Cobalamin biosynt 99.0 2E-09 4.4E-14 95.0 10.7 83 123-208 134-216 (265)
18 PF06180 CbiK: Cobalt chelatas 98.8 1.1E-08 2.3E-13 91.9 8.8 93 127-220 1-110 (262)
19 PRK00035 hemH ferrochelatase; 98.6 1.9E-07 4.2E-12 85.0 8.9 90 130-220 64-161 (333)
20 PRK00035 hemH ferrochelatase; 98.6 1.5E-07 3.3E-12 85.7 7.6 85 125-210 188-288 (333)
21 cd03411 Ferrochelatase_N Ferro 97.8 6.6E-05 1.4E-09 62.1 7.4 71 132-203 60-131 (159)
22 TIGR00109 hemH ferrochelatase. 97.4 0.0005 1.1E-08 63.1 7.6 68 142-210 73-147 (322)
23 TIGR00109 hemH ferrochelatase. 97.4 0.00073 1.6E-08 62.0 8.2 94 126-219 188-301 (322)
24 COG4822 CbiK Cobalamin biosynt 97.1 0.00042 9.2E-09 61.8 3.9 82 125-206 1-95 (265)
25 PF00762 Ferrochelatase: Ferro 96.4 0.014 3E-07 53.7 8.3 94 126-219 183-296 (316)
26 PF00762 Ferrochelatase: Ferro 95.9 0.016 3.5E-07 53.3 6.0 53 146-199 72-128 (316)
27 PRK12435 ferrochelatase; Provi 95.7 0.065 1.4E-06 49.3 9.0 93 125-217 173-285 (311)
28 COG0276 HemH Protoheme ferro-l 95.6 0.042 9.2E-07 51.2 7.2 75 142-217 72-155 (320)
29 PLN02449 ferrochelatase 95.4 0.11 2.4E-06 50.9 9.7 83 124-206 274-374 (485)
30 PRK12435 ferrochelatase; Provi 95.2 0.063 1.4E-06 49.4 7.1 35 159-194 79-113 (311)
31 PLN02449 ferrochelatase 94.9 0.049 1.1E-06 53.3 5.7 61 133-194 153-214 (485)
32 PLN02757 sirohydrochlorine fer 93.5 0.015 3.3E-07 48.4 -0.8 74 42-136 77-150 (154)
33 cd03415 CbiX_CbiC Archaeal sir 93.2 0.0074 1.6E-07 48.8 -3.0 52 40-94 61-113 (125)
34 PF01903 CbiX: CbiX; InterPro 89.5 0.038 8.3E-07 41.7 -2.4 41 44-94 58-98 (105)
35 PRK05782 bifunctional sirohydr 86.4 0.14 3.1E-06 47.9 -1.2 64 40-116 67-131 (335)
36 COG0276 HemH Protoheme ferro-l 85.7 5.8 0.00013 37.2 9.0 85 125-209 183-282 (320)
37 PRK00923 sirohydrochlorin coba 81.6 0.48 1E-05 37.2 0.1 44 41-94 64-114 (126)
38 COG4837 Uncharacterized protei 72.3 15 0.00033 29.1 6.1 70 139-208 23-98 (106)
39 PF07315 DUF1462: Protein of u 65.2 8 0.00017 30.3 3.2 61 139-199 16-76 (93)
40 cd03414 CbiX_SirB_C Sirohydroc 63.2 0.94 2E-05 34.8 -2.3 39 44-94 66-104 (117)
41 KOG1321 Protoheme ferro-lyase 61.3 26 0.00056 33.5 6.4 66 128-194 94-163 (395)
42 cd03416 CbiX_SirB_N Sirohydroc 60.3 3.5 7.6E-05 30.8 0.5 39 42-89 63-101 (101)
43 PF06999 Suc_Fer-like: Sucrase 45.3 47 0.001 28.5 5.1 75 125-210 131-213 (230)
44 PF01422 zf-NF-X1: NF-X1 type 44.1 11 0.00024 21.7 0.7 9 22-30 7-15 (20)
45 TIGR03100 hydr1_PEP hydrolase, 42.7 1.4E+02 0.003 26.1 7.8 69 126-195 26-109 (274)
46 KOG1321 Protoheme ferro-lyase 42.3 61 0.0013 31.1 5.6 78 123-201 224-314 (395)
47 PF03610 EIIA-man: PTS system 40.9 1.5E+02 0.0032 22.7 6.8 36 128-167 1-36 (116)
48 PF01012 ETF: Electron transfe 39.4 2E+02 0.0043 23.1 7.9 66 129-196 3-70 (164)
49 cd06353 PBP1_BmpA_Med_like Per 37.7 2.8E+02 0.006 24.2 9.1 58 128-190 3-63 (258)
50 PF13407 Peripla_BP_4: Peripla 36.5 2.5E+02 0.0054 23.3 8.7 81 132-217 4-85 (257)
51 cd00006 PTS_IIA_man PTS_IIA, P 35.9 99 0.0021 24.0 5.2 21 128-152 2-22 (122)
52 PRK14484 phosphotransferase ma 35.6 1.8E+02 0.004 23.5 6.8 37 126-167 1-37 (124)
53 PF12695 Abhydrolase_5: Alpha/ 33.2 1.1E+02 0.0024 22.8 5.0 62 129-193 1-68 (145)
54 PLN02691 porphobilinogen deami 32.8 2.9E+02 0.0062 26.5 8.6 83 123-216 38-138 (351)
55 PF02233 PNTB: NAD(P) transhyd 32.7 62 0.0013 32.0 4.3 49 170-220 294-346 (463)
56 smart00438 ZnF_NFX Repressor o 31.0 23 0.0005 21.6 0.7 10 22-31 7-16 (26)
57 cd06312 PBP1_ABC_sugar_binding 30.5 3.3E+02 0.0071 22.8 8.5 60 132-193 5-66 (271)
58 PF13684 Dak1_2: Dihydroxyacet 30.0 1.7E+02 0.0036 27.0 6.5 57 124-192 94-150 (313)
59 PRK09444 pntB pyridine nucleot 29.4 64 0.0014 31.9 3.7 49 170-220 293-345 (462)
60 PRK13604 luxD acyl transferase 29.0 2.6E+02 0.0056 26.0 7.5 69 124-195 34-117 (307)
61 PF02608 Bmp: Basic membrane p 28.5 4.3E+02 0.0094 23.6 9.1 81 129-217 4-90 (306)
62 PF08029 HisG_C: HisG, C-termi 27.2 58 0.0013 24.1 2.4 24 170-193 49-72 (75)
63 PF12745 HGTP_anticodon2: Anti 26.7 4.5E+02 0.0097 23.9 8.5 64 124-193 3-66 (273)
64 TIGR02364 dha_pts dihydroxyace 26.3 1.8E+02 0.004 23.3 5.4 22 128-152 2-23 (125)
65 PF13458 Peripla_BP_6: Peripla 25.6 4.4E+02 0.0095 22.8 8.6 60 127-189 136-195 (343)
66 TIGR03599 YloV DAK2 domain fus 24.7 2E+02 0.0042 28.8 6.2 57 125-193 313-369 (530)
67 COG0540 PyrB Aspartate carbamo 24.4 36 0.00078 32.0 1.0 17 25-41 269-285 (316)
68 PRK09057 coproporphyrinogen II 24.1 2.1E+02 0.0045 26.7 6.1 64 127-190 56-120 (380)
69 PRK08659 2-oxoglutarate ferred 23.9 2.8E+02 0.006 26.2 6.9 61 126-193 273-333 (376)
70 COG0621 MiaB 2-methylthioadeni 23.7 2.3E+02 0.005 27.7 6.4 81 130-210 260-354 (437)
71 KOG4667 Predicted esterase [Li 22.7 1.7E+02 0.0037 26.9 4.9 66 127-197 33-112 (269)
72 TIGR00620 sporelyase spore pho 22.6 1.8E+02 0.004 25.5 5.0 32 167-198 64-99 (199)
73 TIGR00824 EIIA-man PTS system, 22.3 2.3E+02 0.0049 22.0 5.1 51 127-182 2-53 (116)
74 cd06274 PBP1_FruR Ligand bindi 22.2 4.6E+02 0.0099 21.7 7.4 57 136-194 9-65 (264)
75 TIGR00182 plsX fatty acid/phos 22.0 1.2E+02 0.0026 28.3 3.9 15 127-141 280-294 (322)
76 PF07203 DUF1412: Protein of u 22.0 40 0.00087 23.8 0.6 15 16-30 32-46 (53)
77 PRK06091 membrane protein FdrA 21.8 4.2E+02 0.0091 26.9 7.9 86 83-185 383-476 (555)
78 PF12146 Hydrolase_4: Putative 21.8 1.6E+02 0.0035 21.4 3.9 28 126-155 15-42 (79)
79 cd06292 PBP1_LacI_like_10 Liga 21.5 4.8E+02 0.01 21.7 9.5 59 134-194 7-65 (273)
80 cd06283 PBP1_RegR_EndR_KdgR_li 21.2 4.7E+02 0.01 21.4 7.1 56 136-193 9-64 (267)
81 PF10137 TIR-like: Predicted n 20.5 4.6E+02 0.01 21.1 6.8 20 130-150 2-21 (125)
82 PRK08367 porA pyruvate ferredo 20.4 3.9E+02 0.0085 25.5 7.2 77 126-209 261-339 (394)
83 PRK08898 coproporphyrinogen II 20.4 3.3E+02 0.0071 25.6 6.6 63 127-190 74-138 (394)
84 COG1744 Med Uncharacterized AB 20.3 7.1E+02 0.015 23.2 9.5 86 125-217 34-126 (345)
85 TIGR00142 hycI hydrogenase mat 20.0 4.5E+02 0.0099 21.0 6.6 62 129-193 1-62 (146)
No 1
>PLN02757 sirohydrochlorine ferrochelatase
Probab=99.91 E-value=5.1e-24 Score=176.78 Aligned_cols=99 Identities=68% Similarity=1.076 Sum_probs=94.0
Q ss_pred CCCCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccc
Q 027626 122 GVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHW 201 (221)
Q Consensus 122 ~~~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv 201 (221)
++++++++|||+||||+++++..+++++++++++.++..|+.||+|+++|++++++++|.++|+++|+|+||||++|.|+
T Consensus 9 ~~~~~~~lllvgHGSrd~~a~~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~~G~H~ 88 (154)
T PLN02757 9 GVGDKDGVVIVDHGSRRKESNLMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLSPGRHW 88 (154)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhcCCcch
Confidence 56788999999999999999999999999999988887899999999999999999999999999999999999999999
Q ss_pred hHHHHhccc------cCcEEEeecC
Q 027626 202 CQVVLSNFL------DNISLNFYRH 220 (221)
Q Consensus 202 ~~DIP~~l~------p~I~l~~a~p 220 (221)
++|||+.++ ++++|.|++|
T Consensus 89 ~~DIp~~v~~~~~~~p~~~i~~~~p 113 (154)
T PLN02757 89 QEDIPALTAEAAKEHPGVKYLVTAP 113 (154)
T ss_pred HhHHHHHHHHHHHHCCCcEEEECCC
Confidence 999999986 7999999986
No 2
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=99.89 E-value=3.8e-23 Score=166.49 Aligned_cols=93 Identities=25% Similarity=0.348 Sum_probs=85.6
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHHH
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVVL 206 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DIP 206 (221)
+++||+|||||++++++.+++++++++++. ...|+.||||+++|+++|++++|.++|+++|+|+||||+.|.|+++|||
T Consensus 1 ~~lllvgHGSR~~~~~~~~~~la~~l~~~~-~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~~G~Hv~~DiP 79 (125)
T cd03415 1 TAIIIITHGSRRNTFNEDMEEWAAYLERKL-GVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLGRGNHVARDIM 79 (125)
T ss_pred CEEEEEecCCCChHHHHHHHHHHHHHHhcc-CCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhccCCcchHHHHH
Confidence 589999999999999999999999999754 4469999999999999999999999999999999999999999999999
Q ss_pred hcccc--------------CcEEEeecC
Q 027626 207 SNFLD--------------NISLNFYRH 220 (221)
Q Consensus 207 ~~l~p--------------~I~l~~a~p 220 (221)
+.++. ++.+++++|
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~i~~~~p 107 (125)
T cd03415 80 GELGVSRFYKWVMSKYGGKEILVYVTEP 107 (125)
T ss_pred HHHHhhcccchhhhccCCCCceEEEeCC
Confidence 98863 577888876
No 3
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=99.89 E-value=1.4e-22 Score=154.00 Aligned_cols=93 Identities=30% Similarity=0.488 Sum_probs=88.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHHHh
Q 027626 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVVLS 207 (221)
Q Consensus 128 aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DIP~ 207 (221)
++|||+|||++++++..+..++++++++.++..|+.||+|..+|+++|++++|.++|+++|+|+||||++|.|+++|||+
T Consensus 1 ~ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~ 80 (101)
T cd03416 1 ALLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPA 80 (101)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHH
Confidence 58999999999999999999999999999888999999998899999999999999999999999999999999999999
Q ss_pred ccc------cCcEEEeecC
Q 027626 208 NFL------DNISLNFYRH 220 (221)
Q Consensus 208 ~l~------p~I~l~~a~p 220 (221)
.++ +++++++++|
T Consensus 81 ~~~~~~~~~~~~~i~~~~p 99 (101)
T cd03416 81 ALAAARARHPGVRIRYAPP 99 (101)
T ss_pred HHHHHHHHCCCeEEEecCC
Confidence 987 6999999886
No 4
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=99.89 E-value=1.1e-22 Score=160.81 Aligned_cols=95 Identities=27% Similarity=0.460 Sum_probs=88.6
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHH
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVV 205 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DI 205 (221)
++++||+||||+++++++.+.++++.++++.++..|++||+|+++|++++++++|.++|+++|+|+||||++|.|+++||
T Consensus 1 ~~~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~di 80 (126)
T PRK00923 1 MLGLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLAHGVHTKRDI 80 (126)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhccCccccccc
Confidence 47899999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred Hhccc-------------cCcEEEeecC
Q 027626 206 LSNFL-------------DNISLNFYRH 220 (221)
Q Consensus 206 P~~l~-------------p~I~l~~a~p 220 (221)
|++++ +++++.|++|
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~i~~~~~ 108 (126)
T PRK00923 81 PRILGLDEGEKEEIEEDGKDVEIVYAEP 108 (126)
T ss_pred chhhhcccccccchhhcCCCeEEEEcCC
Confidence 98554 5888888876
No 5
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=99.85 E-value=7.6e-21 Score=147.74 Aligned_cols=93 Identities=26% Similarity=0.422 Sum_probs=86.4
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHHH
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVVL 206 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DIP 206 (221)
+++||++|||+++++++.+++++++++++.++..|++||+|.++|++++++++|.++|+++|+|+||||++|.|+ +|||
T Consensus 1 ~a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h~-~~i~ 79 (117)
T cd03414 1 TAVVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTGVLM-DRIE 79 (117)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCCchH-HHHH
Confidence 479999999999999999999999999998878899999999899999999999999999999999999999998 5899
Q ss_pred hccc-----cCcEEEeecC
Q 027626 207 SNFL-----DNISLNFYRH 220 (221)
Q Consensus 207 ~~l~-----p~I~l~~a~p 220 (221)
+.+. +++++.+++|
T Consensus 80 ~~~~~~~~~~~~~i~~~~p 98 (117)
T cd03414 80 EQVAELAAEPGIEFVLAPP 98 (117)
T ss_pred HHHHHHHhCCCceEEECCC
Confidence 8776 5788988876
No 6
>PRK02395 hypothetical protein; Provisional
Probab=99.84 E-value=3.4e-21 Score=171.94 Aligned_cols=162 Identities=20% Similarity=0.271 Sum_probs=120.6
Q ss_pred HHHHHHHHhhcccCCCCCccchHHhhc----cChhhhcCCCceeeeeeccCCcCCCCCCCCCCCCccccCCCcccccccc
Q 027626 40 IALILCKITSSLHKPSETPNSWKADQN----MSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSI 115 (221)
Q Consensus 40 ~~~~~~~~~~~~h~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~l~~ 115 (221)
|.++=.+|+.++|.+.|||+.+..+.+ +.+...... ..++. ++ .++|. ||. +...+ ..++.+
T Consensus 60 ivVvPlfL~~G~Hv~~DIP~~l~~~~~~~~~~~~~~~~~~-~~~i~-~~-~plG~-~p~-----l~~~l-----~~ri~e 125 (279)
T PRK02395 60 VYVVPLFISEGYFTEQVIPRELGLGHDGPVADRGTLRALD-GKTVH-YT-GPVGT-HPA-----MADVI-----AARARS 125 (279)
T ss_pred EEEEeeEeccccchhhhhHHHhcCCcCCccccccccccCC-CceEE-eC-CCCCC-ChH-----HHHHH-----HHHHHH
Confidence 334445779999999999999986432 222111111 44555 66 45999 887 77333 344555
Q ss_pred cCCCCCCCCCCceEEEEecCCCC-chhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccc
Q 027626 116 KSSSRDGVGDKDGVIIVDHGSRR-RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (221)
Q Consensus 116 ~g~~~~~~~~~~aLLLVaHGSrd-pean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLF 194 (221)
+..+. ....++++|||||||++ +++|+.++++++.++++.++..|.+||+| +.|+++++++++. .++|+|+|||
T Consensus 126 ~~~~~-~~~~~~alvlvgHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle-~~P~l~~~l~~l~---~~~V~vvP~f 200 (279)
T PRK02395 126 VTGDP-DVGEDTALAVVGHGTERNENSAKAIYYHADRLRERGRFAEVEALFLD-EEPEVDDWPDLFE---ADDVVVVPLF 200 (279)
T ss_pred hhcCC-CCCcCceEEEEecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEecc-CCCCHHHHHHHhC---CCeEEEEeee
Confidence 54332 23467799999999996 46899999999999998788789999999 7899999998863 5899999999
Q ss_pred ccCcccchHHHHhccc-----------c----CcEEEeecC
Q 027626 195 LFPGRHWCQVVLSNFL-----------D----NISLNFYRH 220 (221)
Q Consensus 195 L~~G~Hv~~DIP~~l~-----------p----~I~l~~a~p 220 (221)
|++|.|+++|||+.+. + ++++.+++|
T Consensus 201 L~~G~H~~~DIp~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ 241 (279)
T PRK02395 201 IADGFHTQEDIPEDMGLTDDYRTGYDVPTAVDGHRIWYAGA 241 (279)
T ss_pred cccCcchHhHHHHHHHHhhccccccCCCcccCCeeEEEecC
Confidence 9999999999998754 2 567777765
No 7
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=99.84 E-value=9.6e-21 Score=174.43 Aligned_cols=96 Identities=23% Similarity=0.387 Sum_probs=88.1
Q ss_pred CCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchH
Q 027626 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (221)
Q Consensus 124 ~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~ 203 (221)
.+++++||+|||||++++++.+++++++++++.+. .|+.||||+++|+++|++++|.++|+++|+|+||||++|.|+++
T Consensus 4 ~~~~aiLLvgHGSRdp~~~~~~~~La~~l~~~~~~-~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlFL~~G~Hv~~ 82 (335)
T PRK05782 4 QSNTAIILIGHGSRRETFNSDMEGMANYLKEKLGV-PIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAFLGRGNHVFR 82 (335)
T ss_pred CCCceEEEEecCCCChHHHHHHHHHHHHHHhccCC-ceEEEEeccCCCCHHHHHHHHHHCCCCEEEEecccccCCcchhh
Confidence 45789999999999999999999999999987554 69999999999999999999999999999999999999999999
Q ss_pred HHHhccc--------------cCcEEEeecC
Q 027626 204 VVLSNFL--------------DNISLNFYRH 220 (221)
Q Consensus 204 DIP~~l~--------------p~I~l~~a~p 220 (221)
|||+.++ ++++|+|++|
T Consensus 83 DIP~~L~~~~~~~~~~~~~~~~~i~i~l~~p 113 (335)
T PRK05782 83 DIMGELGVQRLNSWEVSKISGKEVEFYVTEP 113 (335)
T ss_pred hHHHHHHHhhhcchhhhhcCCCceeEEECCC
Confidence 9998776 2478888876
No 8
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=99.84 E-value=3.7e-21 Score=146.66 Aligned_cols=86 Identities=37% Similarity=0.596 Sum_probs=79.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHHHhccc---
Q 027626 134 HGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVVLSNFL--- 210 (221)
Q Consensus 134 HGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DIP~~l~--- 210 (221)
|||++++++..++.++++++++.+ ..|.+||+|.++|++++++++|.++|+++|+|+||||++|.|+++|||+.++
T Consensus 1 HGSr~~~~~~~~~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G~h~~~DIp~~l~~~~ 79 (105)
T PF01903_consen 1 HGSRDPEANAELEDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFLFPGYHVKRDIPEALAEAR 79 (105)
T ss_dssp -STSSCHHHHHHHHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESSSSSHHHHCHHHHHHCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeeecCccchHhHHHHHHHHHH
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999998
Q ss_pred ---cCcEEEeecC
Q 027626 211 ---DNISLNFYRH 220 (221)
Q Consensus 211 ---p~I~l~~a~p 220 (221)
++++++|++|
T Consensus 80 ~~~~~~~v~~~~p 92 (105)
T PF01903_consen 80 ERHPGIEVRVAPP 92 (105)
T ss_dssp HCSTTEEEEE---
T ss_pred hhCCceEEEECCC
Confidence 6899999876
No 9
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=99.82 E-value=3.7e-20 Score=144.27 Aligned_cols=79 Identities=20% Similarity=0.377 Sum_probs=74.5
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHHH
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVVL 206 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DIP 206 (221)
+++||||||||+++ +..++.|+++++++.+ ..|.+||+| +.|+++++++++.++|+++|+|+||||++|.|+++|||
T Consensus 1 ~~illvgHGSr~~~-~~~~~~l~~~l~~~~~-~~v~~~~lE-~~P~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dip 77 (103)
T cd03413 1 EAVVFMGHGTDHPS-NAVYAALEYVLREEDP-ANVFVGTVE-GYPGLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMA 77 (103)
T ss_pred CeEEEEECCCCchh-hhHHHHHHHHHHhcCC-CcEEEEEEc-CCCCHHHHHHHHHHcCCCEEEEEehhheecccchhcCC
Confidence 37999999999997 8999999999998866 679999999 89999999999999999999999999999999999999
Q ss_pred hc
Q 027626 207 SN 208 (221)
Q Consensus 207 ~~ 208 (221)
+.
T Consensus 78 ge 79 (103)
T cd03413 78 GD 79 (103)
T ss_pred CC
Confidence 86
No 10
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=99.78 E-value=1.3e-18 Score=139.54 Aligned_cols=93 Identities=14% Similarity=0.216 Sum_probs=87.3
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEee-----------cCCCCHHHHHHHHHHcCCCeEEEEcccc
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME-----------LAEPSIKDAFGSCVQQGANRVIVSPFFL 195 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE-----------~a~PsLeeaL~~L~~~G~~rIvVVPLFL 195 (221)
++|||++|||++++++..+..+++.+++++|...|+.||++ ...|++.+++++|.++|+++|+|+|+||
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l 80 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHI 80 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCee
Confidence 48999999999999999999999999999999999999996 4589999999999999999999999999
Q ss_pred cCcccchHHHHhccc----cCcEEEeecC
Q 027626 196 FPGRHWCQVVLSNFL----DNISLNFYRH 220 (221)
Q Consensus 196 ~~G~Hv~~DIP~~l~----p~I~l~~a~p 220 (221)
++|.|. +|||+.++ +.+++.+++|
T Consensus 81 ~~G~e~-~di~~~v~~~~~~~~~i~~g~p 108 (127)
T cd03412 81 IPGEEY-EKLKREVDAFKKGFKKIKLGRP 108 (127)
T ss_pred ECcHHH-HHHHHHHHHHhCCCceEEEccC
Confidence 999995 89999997 6889999887
No 11
>PRK02395 hypothetical protein; Provisional
Probab=99.78 E-value=7.5e-19 Score=156.93 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=84.0
Q ss_pred CceEEEEecCC-CCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHH
Q 027626 126 KDGVIIVDHGS-RRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQV 204 (221)
Q Consensus 126 ~~aLLLVaHGS-rdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~D 204 (221)
|++|||||||| +++++++.++.++++++++.++..|++|||| ++|+++|+++++. .++|+|+||||++|.|+++|
T Consensus 1 ~~~lllvgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle-~~P~l~~~l~~l~---~~~ivVvPlfL~~G~Hv~~D 76 (279)
T PRK02395 1 MQALVLVGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWK-EEPSLRQVLRTVE---SDEVYVVPLFISEGYFTEQV 76 (279)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeecc-CCCCHHHHHHhcC---cCcEEEEeeEeccccchhhh
Confidence 47899999999 5889999999999999999888899999999 9999999999985 58999999999999999999
Q ss_pred HHhcccc----------------CcEEEeecC
Q 027626 205 VLSNFLD----------------NISLNFYRH 220 (221)
Q Consensus 205 IP~~l~p----------------~I~l~~a~p 220 (221)
||+.++. ++++.|++|
T Consensus 77 IP~~l~~~~~~~~~~~~~~~~~~~~~i~~~~p 108 (279)
T PRK02395 77 IPRELGLGHDGPVADRGTLRALDGKTVHYTGP 108 (279)
T ss_pred hHHHhcCCcCCccccccccccCCCceEEeCCC
Confidence 9999873 788999876
No 12
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.74 E-value=1.5e-17 Score=125.02 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=78.4
Q ss_pred eEEEEecCCCCc-hhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHHH
Q 027626 128 GVIIVDHGSRRR-ESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVVL 206 (221)
Q Consensus 128 aLLLVaHGSrdp-ean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DIP 206 (221)
+||+++|||+++ ..+..++.++++++++.+...|.+||++...|++++++++|.++|+++|+|+|+|+++|.|+.+||+
T Consensus 1 ~lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~~~di~ 80 (101)
T cd03409 1 GLLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEVFYDID 80 (101)
T ss_pred CEEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccccChhhHHHHH
Confidence 589999999998 8899999999999999887889999999668999999999999999999999999999999999999
Q ss_pred hccc
Q 027626 207 SNFL 210 (221)
Q Consensus 207 ~~l~ 210 (221)
..+.
T Consensus 81 ~~~~ 84 (101)
T cd03409 81 SEIG 84 (101)
T ss_pred HHHH
Confidence 8876
No 13
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.71 E-value=9.5e-18 Score=148.68 Aligned_cols=85 Identities=29% Similarity=0.494 Sum_probs=82.5
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHH
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVV 205 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DI 205 (221)
+.++|+++|||+++.+++.+..++++++++..+..|.++|+|++.|+++++++.|+.+|+++|+|||+||+.|.|+++||
T Consensus 2 ~~~~llvgHGsr~p~~~~~~~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~~DI 81 (245)
T COG2138 2 MPALLLVGHGSRLPRGREVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTKRDI 81 (245)
T ss_pred CcceeeeecCCCCccHHHHHHHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCchhhccc
Confidence 57899999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred Hhccc
Q 027626 206 LSNFL 210 (221)
Q Consensus 206 P~~l~ 210 (221)
|+++.
T Consensus 82 P~~L~ 86 (245)
T COG2138 82 PAELG 86 (245)
T ss_pred HHHHH
Confidence 99987
No 14
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=99.33 E-value=7.7e-13 Score=117.46 Aligned_cols=152 Identities=19% Similarity=0.258 Sum_probs=119.3
Q ss_pred HHHHHHHHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCCcCCCCCCCCCCCCccccCCCcccccccccCCC
Q 027626 40 IALILCKITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSS 119 (221)
Q Consensus 40 ~~~~~~~~~~~~h~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~l~~~g~~ 119 (221)
|.++-.+|..++|.+.|||+.+..++.+.+ +.. +. ++|+ ||.|++ + ..+|+.+.+.+
T Consensus 64 ivvVPlfl~~g~H~~~DIP~~L~~~~~~~~-------~~~---~~--p~G~-~~~~~~--~--------~~~r~~~~~~~ 120 (245)
T COG2138 64 IVVVPLFLAAGYHTKRDIPAELGLARQAHP-------QVD---LS--PLGT-HPAVLD--L--------LGQRLEDAGAD 120 (245)
T ss_pred EEEeehhhccCchhhcccHHHHHHhhhcCC-------ccc---cc--ccCC-chHHHH--H--------HHHHHHHhccc
Confidence 555667899999999999999999999988 331 22 6999 998544 2 24555555533
Q ss_pred CCCCCCCceEEEEecCCCCchhHHHHHHHHHHHHHHc-CCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCc
Q 027626 120 RDGVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKT-GYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPG 198 (221)
Q Consensus 120 ~~~~~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~-~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G 198 (221)
.. .....+++.++||+++.+|..+..+++.+.+.. ++..+..+|++...|++.+...++. .++++|+||||+.|
T Consensus 121 ~~--~~~~~vv~~~~Gs~~~~~~~~~~~va~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~vv~P~fL~~G 195 (245)
T COG2138 121 EA--DDAERVVLEPRGSSDPIANAAVYRVARLLGEGTASWKAVITLFTGVAEPGLAGETARLR---YRRVVVLPYFLFDG 195 (245)
T ss_pred cc--cccceEEEeccCCCcccchhHHHHHHHHHHhccCCceeeeeeeccccCcchhhhhhhcc---cCcEEEEEhhHhCc
Confidence 32 233459999999999999999999999999987 6778899999999999999888875 78999999999999
Q ss_pred ccchHHHHhcc----ccCcEEEeec
Q 027626 199 RHWCQVVLSNF----LDNISLNFYR 219 (221)
Q Consensus 199 ~Hv~~DIP~~l----~p~I~l~~a~ 219 (221)
.++.++++... -+...+.+++
T Consensus 196 ~l~~~~~~~~~~~~~~~~~~i~~~~ 220 (245)
T COG2138 196 LLTDRIRPEVELRLAVPEGEIALAR 220 (245)
T ss_pred hhhhhhHHhhhhhhccCCcceEecC
Confidence 99999998543 1455555544
No 15
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=99.30 E-value=3.4e-12 Score=114.37 Aligned_cols=81 Identities=23% Similarity=0.430 Sum_probs=67.0
Q ss_pred CCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchH
Q 027626 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (221)
Q Consensus 124 ~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~ 203 (221)
.+++++|+|||||.++ +|..+..|...+++. +...|.+|.+| +.|++++++++|.+.|+++|.++|||++.|.|+.+
T Consensus 139 ~~~~a~vlmGHGt~h~-an~~Y~~l~~~l~~~-~~~~v~vgtvE-G~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~n 215 (262)
T PF06180_consen 139 RKDEAVVLMGHGTPHP-ANAAYSALQAMLKKH-GYPNVFVGTVE-GYPSLEDVIARLKKKGIKKVHLIPLMLVAGDHAKN 215 (262)
T ss_dssp -TTEEEEEEE---SCH-HHHHHHHHHHHHHCC-T-TTEEEEETT-SSSBHHHHHHHHHHHT-SEEEEEEESSS--HHHHC
T ss_pred CCCCEEEEEeCCCCCC-ccHHHHHHHHHHHhC-CCCeEEEEEeC-CCCCHHHHHHHHHhcCCCeEEEEecccccchhhhh
Confidence 4789999999999876 688999999999874 55679999999 68999999999999999999999999999999999
Q ss_pred HHHh
Q 027626 204 VVLS 207 (221)
Q Consensus 204 DIP~ 207 (221)
||.+
T Consensus 216 DmaG 219 (262)
T PF06180_consen 216 DMAG 219 (262)
T ss_dssp CCCS
T ss_pred hhcC
Confidence 9965
No 16
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.03 E-value=2.5e-09 Score=86.94 Aligned_cols=95 Identities=20% Similarity=0.222 Sum_probs=79.1
Q ss_pred CCceEEEEecCCCCchh------HHHHHHHHHHHHHHcC--CceEEEEEeecC------CCCHHHHHHHHHHcCCCeEEE
Q 027626 125 DKDGVIIVDHGSRRRES------NLMLKQFVAMFREKTG--YLIVEPAHMELA------EPSIKDAFGSCVQQGANRVIV 190 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpea------n~~~~~LA~~L~~~~~--~~~V~vAFLE~a------~PsLeeaL~~L~~~G~~rIvV 190 (221)
+...+|+.+||.+.... .....+.+++++++.+ ...+.++|.+.. +|+++|+++++.++|+++|+|
T Consensus 17 ~~~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v 96 (135)
T cd00419 17 EKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVV 96 (135)
T ss_pred CCCEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Confidence 56789999999975433 6778888888888877 667999999754 899999999999999999999
Q ss_pred Ecc-cccCcccchHHHHhccc-----cC-cEEEeec
Q 027626 191 SPF-FLFPGRHWCQVVLSNFL-----DN-ISLNFYR 219 (221)
Q Consensus 191 VPL-FL~~G~Hv~~DIP~~l~-----p~-I~l~~a~ 219 (221)
+|+ |++.+.|+..||+.+.. .| .++.+.+
T Consensus 97 ~p~gF~~D~~Etl~di~~e~~~~~~~~G~~~~~rvp 132 (135)
T cd00419 97 VPIGFVSDHLETLYELDIEYRELAEEAGGENYRRVP 132 (135)
T ss_pred ECCccccccHHHHHHHHHHHHHHHHHcCCceEEEcC
Confidence 999 99999999999997765 23 5555543
No 17
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=99.03 E-value=2e-09 Score=95.02 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=73.5
Q ss_pred CCCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccch
Q 027626 123 VGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWC 202 (221)
Q Consensus 123 ~~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~ 202 (221)
.+.++.+||++|||.++ +++.+..+-..+.+ .++.+|.+|.+| +-|.++++++.|.+.|.+.|.++||+|+.|.|+.
T Consensus 134 l~k~e~~vlmgHGt~h~-s~~~YacLd~~~~~-~~f~~v~v~~ve-~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~ 210 (265)
T COG4822 134 LNKDEILVLMGHGTDHH-SNAAYACLDHVLDE-YGFDNVFVAAVE-GYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAK 210 (265)
T ss_pred cCcCeEEEEEecCCCcc-HHHHHHHHHHHHHh-cCCCceEEEEec-CCCcHHHHHHHHHHcCCceEEEeeeEEeechhhh
Confidence 55889999999999866 66777777777765 488889999999 6899999999999999999999999999999999
Q ss_pred HHHHhc
Q 027626 203 QVVLSN 208 (221)
Q Consensus 203 ~DIP~~ 208 (221)
+|+.+.
T Consensus 211 nDMasd 216 (265)
T COG4822 211 NDMASD 216 (265)
T ss_pred hhhccc
Confidence 999943
No 18
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=98.85 E-value=1.1e-08 Score=91.93 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=67.6
Q ss_pred ceEEEEecCCCCchhHH-HHHHHHHHHHHHcCCceEEEEEee------------cCCCCHHHHHHHHHHcCCCeEEEEcc
Q 027626 127 DGVIIVDHGSRRRESNL-MLKQFVAMFREKTGYLIVEPAHME------------LAEPSIKDAFGSCVQQGANRVIVSPF 193 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~-~~~~LA~~L~~~~~~~~V~vAFLE------------~a~PsLeeaL~~L~~~G~~rIvVVPL 193 (221)
+|||||++||+.+++.. .+..+.+.+++.+|...|+.||.+ ..-+++.+++++|.++|+++|+|+|+
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~~V~VQpl 80 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYTEVVVQPL 80 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT--EEEEEE-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCCEEEEeec
Confidence 48999999999999887 999999999999999999999995 23589999999999999999999999
Q ss_pred cccCcccchHHHHhccc----cCcEEEeecC
Q 027626 194 FLFPGRHWCQVVLSNFL----DNISLNFYRH 220 (221)
Q Consensus 194 FL~~G~Hv~~DIP~~l~----p~I~l~~a~p 220 (221)
.+.+|..+. +|-+.++ .--++++++|
T Consensus 81 hiipG~Ey~-~l~~~v~~~~~~F~~i~~g~P 110 (262)
T PF06180_consen 81 HIIPGEEYE-KLRATVEAYKHDFKKIVLGRP 110 (262)
T ss_dssp -SCSSHHHH-HHHHHHHHHCCCSSEEEEE--
T ss_pred ceeCcHhHH-HHHHHHHHhhccCCeEEeccc
Confidence 999998875 5665554 2346677765
No 19
>PRK00035 hemH ferrochelatase; Reviewed
Probab=98.59 E-value=1.9e-07 Score=84.98 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=66.5
Q ss_pred EEEecCCCCch-hHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccc----hHH
Q 027626 130 IIVDHGSRRRE-SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHW----CQV 204 (221)
Q Consensus 130 LLVaHGSrdpe-an~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv----~~D 204 (221)
=.|+|||+... .....+.+.+.+.+..+...|..| |+++.|+++|++++|.++|+++|+|+|+|+..+.|+ .+|
T Consensus 64 ~~ig~gSPl~~~t~~q~~~L~~~l~~~~~~~~V~~a-m~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~ 142 (333)
T PRK00035 64 ASIGGGSPLNVITRRQAEALQAELAARGPDLPVYLG-MRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFED 142 (333)
T ss_pred HHcCCCChhHHHHHHHHHHHHHHHhccCCCceEEEe-ecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHH
Confidence 45688998764 445556666666544344567777 699999999999999999999999999999777555 555
Q ss_pred HHhccc---cCcEEEeecC
Q 027626 205 VLSNFL---DNISLNFYRH 220 (221)
Q Consensus 205 IP~~l~---p~I~l~~a~p 220 (221)
+++.+. .++++++.+|
T Consensus 143 i~~~~~~~~~~~~i~~i~~ 161 (333)
T PRK00035 143 LARALAKLRLQPEIRFIRS 161 (333)
T ss_pred HHHHHHhcCCCCcEEEeCC
Confidence 555554 2677877654
No 20
>PRK00035 hemH ferrochelatase; Reviewed
Probab=98.57 E-value=1.5e-07 Score=85.65 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCceEEEEecCCCCch------hHHHHHHHHHHHHHHcCC--ceEEEEEeec------CCCCHHHHHHHHHHcCCCeEEE
Q 027626 125 DKDGVIIVDHGSRRRE------SNLMLKQFVAMFREKTGY--LIVEPAHMEL------AEPSIKDAFGSCVQQGANRVIV 190 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpe------an~~~~~LA~~L~~~~~~--~~V~vAFLE~------a~PsLeeaL~~L~~~G~~rIvV 190 (221)
++++||+++||+..+. ....+.+.++.+.++.+. ..+.+||... .+|+++|+++++.++|+++|+|
T Consensus 188 ~~~~llfs~HG~P~~~~~~gd~Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v 267 (333)
T PRK00035 188 EPDRLLFSAHGLPQRYIDKGDPYQQQCEETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVV 267 (333)
T ss_pred CCcEEEEecCCCchHHhhcCCChHHHHHHHHHHHHHHhCCCCCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEE
Confidence 5679999999976542 344566677777777764 5689999975 5799999999999999999999
Q ss_pred EcccccCccc--chHHHHhccc
Q 027626 191 SPFFLFPGRH--WCQVVLSNFL 210 (221)
Q Consensus 191 VPLFL~~G~H--v~~DIP~~l~ 210 (221)
+|++++. .| +..||.....
T Consensus 268 ~P~~Fv~-D~lEtl~ei~~e~~ 288 (333)
T PRK00035 268 VPPGFVS-DHLETLEEIDIEYR 288 (333)
T ss_pred ECCeeec-cchhHHHHHHHHHH
Confidence 9998766 88 5577765543
No 21
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=97.83 E-value=6.6e-05 Score=62.06 Aligned_cols=71 Identities=21% Similarity=0.249 Sum_probs=50.0
Q ss_pred EecCCCCchh-HHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchH
Q 027626 132 VDHGSRRRES-NLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (221)
Q Consensus 132 VaHGSrdpea-n~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~ 203 (221)
+++||+-... ....+++.+.+.+......|..| |.++.|+++|++++|.+.|+++|+++|+|.....-+..
T Consensus 60 ig~~SPL~~~t~~q~~~l~~~L~~~~~~~~v~~a-mry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~ 131 (159)
T cd03411 60 IGGGSPLNEITRAQAEALEKALDERGIDVKVYLA-MRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTG 131 (159)
T ss_pred cCCCCccHHHHHHHHHHHHHHHhccCCCcEEEeh-HhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHH
Confidence 4558865333 33444555555443223456666 88899999999999999999999999999887755433
No 22
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=97.41 E-value=0.0005 Score=63.14 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHcC---CceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccc----ccCcccchHHHHhccc
Q 027626 142 NLMLKQFVAMFREKTG---YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF----LFPGRHWCQVVLSNFL 210 (221)
Q Consensus 142 n~~~~~LA~~L~~~~~---~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLF----L~~G~Hv~~DIP~~l~ 210 (221)
+...++.++.|++.++ ...|..|| .++.|++++++++|.++|+++|+++|++ .+.-.|+.+|+++.+.
T Consensus 73 ~~~t~~q~~~l~~~l~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~ 147 (322)
T TIGR00109 73 LQITEQQAHALEKRLPNEIDFKVYIAM-RYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALK 147 (322)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEee-ccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHH
Confidence 4455667777777765 35788887 5789999999999999999999999999 6777889999998876
No 23
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=97.37 E-value=0.00073 Score=62.05 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=67.0
Q ss_pred CceEEEEecCCCC------chhHHHHHHHHHHHHHHcC-CceEEEEEeec------CCCCHHHHHHHHHHcCCCeEEEEc
Q 027626 126 KDGVIIVDHGSRR------RESNLMLKQFVAMFREKTG-YLIVEPAHMEL------AEPSIKDAFGSCVQQGANRVIVSP 192 (221)
Q Consensus 126 ~~aLLLVaHGSrd------pean~~~~~LA~~L~~~~~-~~~V~vAFLE~------a~PsLeeaL~~L~~~G~~rIvVVP 192 (221)
...||+-+||-.. ........+.++.+.++.+ ...+.+||.+. .+|++++.+++|.++|+++|+|+|
T Consensus 188 ~~~llfSaHglP~~~~~~Gd~Y~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP 267 (322)
T TIGR00109 188 NAVLLFSAHGLPQSYVDEGDPYPAECEATTRLIAEKLGFPNEYRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVP 267 (322)
T ss_pred CcEEEEeCCCCchhHhhCCCChHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEEC
Confidence 3478888898862 1133567778888887776 35689999874 379999999999999999999999
Q ss_pred c-cccCcccchHHHHhc----cc-cCcE-EEeec
Q 027626 193 F-FLFPGRHWCQVVLSN----FL-DNIS-LNFYR 219 (221)
Q Consensus 193 L-FL~~G~Hv~~DIP~~----l~-p~I~-l~~a~ 219 (221)
+ |+.....+..||--+ .. .|++ +.+.+
T Consensus 268 ~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp 301 (322)
T TIGR00109 268 IGFTADHLETLYEIDEEYREVAEDAGGDKYQRCP 301 (322)
T ss_pred CcccccchhHHHhhhHHHHHHHHHcCCCeEEECC
Confidence 6 455556666666522 22 4665 65544
No 24
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=97.14 E-value=0.00042 Score=61.77 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=68.0
Q ss_pred CCceEEEEecCCCCchhH-HHHHHHHHHHHHHcCCceEEEEEeec------------CCCCHHHHHHHHHHcCCCeEEEE
Q 027626 125 DKDGVIIVDHGSRRRESN-LMLKQFVAMFREKTGYLIVEPAHMEL------------AEPSIKDAFGSCVQQGANRVIVS 191 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpean-~~~~~LA~~L~~~~~~~~V~vAFLE~------------a~PsLeeaL~~L~~~G~~rIvVV 191 (221)
+++||++|+.|++.++.. .++.++-+.+++..|...|.-||.+. -.-+...|+.+|.++|++.|+|.
T Consensus 1 mKKailiVsFGTty~dtre~tIda~e~~va~efpDydvfrAfTS~kIIkkLK~rdgi~~dTP~~aL~klk~~gy~eviiQ 80 (265)
T COG4822 1 MKKAILIVSFGTTYNDTRELTIDAIEEKVADEFPDYDVFRAFTSRKIIKKLKERDGIDFDTPIQALNKLKDQGYEEVIIQ 80 (265)
T ss_pred CCceEEEEEcCCccchhHHhhHHHHHHHHHHhCccHHHHHHHhHHHHHHHHHhhcCcccCCHHHHHHHHHHccchheeee
Confidence 468999999999998875 47788888888888888888888741 23456889999999999999999
Q ss_pred cccccCcccchHHHH
Q 027626 192 PFFLFPGRHWCQVVL 206 (221)
Q Consensus 192 PLFL~~G~Hv~~DIP 206 (221)
|+.+.||..+.+=+.
T Consensus 81 ~lhiIpG~EyEklvr 95 (265)
T COG4822 81 PLHIIPGIEYEKLVR 95 (265)
T ss_pred eeeecCchHHHHHHH
Confidence 999999988865433
No 25
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=96.45 E-value=0.014 Score=53.70 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=65.7
Q ss_pred CceEEEEecCCCCc-------hhHHHHHHHHHHHHHHcCCceEEEEEeec------CCCCHHHHHHHHHHcCCCeEEEEc
Q 027626 126 KDGVIIVDHGSRRR-------ESNLMLKQFVAMFREKTGYLIVEPAHMEL------AEPSIKDAFGSCVQQGANRVIVSP 192 (221)
Q Consensus 126 ~~aLLLVaHGSrdp-------ean~~~~~LA~~L~~~~~~~~V~vAFLE~------a~PsLeeaL~~L~~~G~~rIvVVP 192 (221)
...+|+-+||-... .......+.++.++++.+...+.+||-+. -.|+++++++++.++|+++|+|+|
T Consensus 183 ~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p 262 (316)
T PF00762_consen 183 PDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVVP 262 (316)
T ss_dssp CEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEEE
T ss_pred CCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEEC
Confidence 58999999998531 23456677788888888877799999852 358999999999999999999998
Q ss_pred -ccccCcccchHHH----Hhccc-cCc-EEEeec
Q 027626 193 -FFLFPGRHWCQVV----LSNFL-DNI-SLNFYR 219 (221)
Q Consensus 193 -LFL~~G~Hv~~DI----P~~l~-p~I-~l~~a~ 219 (221)
-|++....+..|| .+.+. .|+ .+++.+
T Consensus 263 ~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip 296 (316)
T PF00762_consen 263 PGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIP 296 (316)
T ss_dssp TT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE--
T ss_pred CccccccHhHHHHHHHHHHHHHHHcCCceEEEeC
Confidence 5666677777777 33332 366 665543
No 26
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=95.94 E-value=0.016 Score=53.31 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcC----CceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcc
Q 027626 146 KQFVAMFREKTG----YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGR 199 (221)
Q Consensus 146 ~~LA~~L~~~~~----~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~ 199 (221)
++.++.|+++++ ...|..||- ++.|.+++++++|.++|+++|+++|++=.-..
T Consensus 72 ~~qa~~l~~~L~~~~~~~~V~~amr-y~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~ 128 (316)
T PF00762_consen 72 RRQAEALQQRLDERGVDVEVYYAMR-YGPPSIEDALEELKADGVDRIVVLPLYPQYSS 128 (316)
T ss_dssp HHHHHHHHHHHHHH-EEEEEEEEES-SSSSBHHHHHHHHHHTT-SEEEEEESSSS--T
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEec-cCCCCHHHHHHHHHHcCCCeEEEEeCCCchhH
Confidence 444555555443 456777776 58999999999999999999999998765553
No 27
>PRK12435 ferrochelatase; Provisional
Probab=95.71 E-value=0.065 Score=49.31 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=67.8
Q ss_pred CCceEEEEecCCCCc------hhHHHHHHHHHHHHHHcCCceEEEEEeec-C------CCCHHHHHHHHHHc-CCCeEEE
Q 027626 125 DKDGVIIVDHGSRRR------ESNLMLKQFVAMFREKTGYLIVEPAHMEL-A------EPSIKDAFGSCVQQ-GANRVIV 190 (221)
Q Consensus 125 ~~~aLLLVaHGSrdp------ean~~~~~LA~~L~~~~~~~~V~vAFLE~-a------~PsLeeaL~~L~~~-G~~rIvV 190 (221)
++..||+.+||-... .......+.++.+.++.+...+.++|-+- . +|+++|.++++.++ |.++|+|
T Consensus 173 ~~~~llfSaHslP~~~i~~GDpY~~q~~~t~~~v~~~l~~~~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~v 252 (311)
T PRK12435 173 EKAVLIVSAHSLPEKIIAAGDPYPDQLEETADLIAEQANVEHYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIY 252 (311)
T ss_pred cceEEEEecCCCchhHhhCCCCHHHHHHHHHHHHHHHcCCCCCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEE
Confidence 456899999998642 23445556666776666665678888763 1 68999999999887 9999999
Q ss_pred Ec-ccccCcccchHHHHhccc-----cCcEEEe
Q 027626 191 SP-FFLFPGRHWCQVVLSNFL-----DNISLNF 217 (221)
Q Consensus 191 VP-LFL~~G~Hv~~DIP~~l~-----p~I~l~~ 217 (221)
+| -|++.-..+..||--+.. .|+++..
T Consensus 253 vpigFvsDhlETl~Eldie~~e~a~~~G~~~~r 285 (311)
T PRK12435 253 TPVGFVAEHLEVLYDNDYECKVVTDEIGAKYYR 285 (311)
T ss_pred ECCchhhhhHHHHHHHHHHHHHHHHHcCCcEEe
Confidence 99 788878888888863222 4666444
No 28
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=95.57 E-value=0.042 Score=51.17 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHcC--CceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccch----HHHHhccc---cC
Q 027626 142 NLMLKQFVAMFREKTG--YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWC----QVVLSNFL---DN 212 (221)
Q Consensus 142 n~~~~~LA~~L~~~~~--~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~----~DIP~~l~---p~ 212 (221)
+...++.++.|.++.+ ...|..|+- +..|.++|++++|.++|+++|+++|++=--+.-+. +++-+.+. ..
T Consensus 72 ~~~T~~q~~~L~~~L~~~~~~V~~amr-y~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~~~ 150 (320)
T COG0276 72 NVITRAQAAALEERLDLPDFKVYLAMR-YGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELRGQ 150 (320)
T ss_pred HHHHHHHHHHHHHHhCCCCccEEEeec-CCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcCCC
Confidence 4556677778877764 567888876 58999999999999999999999998765554433 45555553 33
Q ss_pred cEEEe
Q 027626 213 ISLNF 217 (221)
Q Consensus 213 I~l~~ 217 (221)
+++++
T Consensus 151 ~~i~~ 155 (320)
T COG0276 151 PKIST 155 (320)
T ss_pred CceEE
Confidence 44444
No 29
>PLN02449 ferrochelatase
Probab=95.40 E-value=0.11 Score=50.95 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=60.8
Q ss_pred CCCceEEEEecCCCCc---h----hHHHHHHHHHHHHHHcCC----ceEEEEEee-cC-----CCCHHHHHHHHHHcCCC
Q 027626 124 GDKDGVIIVDHGSRRR---E----SNLMLKQFVAMFREKTGY----LIVEPAHME-LA-----EPSIKDAFGSCVQQGAN 186 (221)
Q Consensus 124 ~~~~aLLLVaHGSrdp---e----an~~~~~LA~~L~~~~~~----~~V~vAFLE-~a-----~PsLeeaL~~L~~~G~~ 186 (221)
+++..||+-+||-... + ....+++.++.+.++.+. ..+.+||-+ ++ .|.++|++++|.++|++
T Consensus 274 ~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk 353 (485)
T PLN02449 274 PEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVK 353 (485)
T ss_pred cCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 3456899999998642 1 345666667777666554 457889886 33 69999999999999999
Q ss_pred eEEEEcc-cccCcccchHHHH
Q 027626 187 RVIVSPF-FLFPGRHWCQVVL 206 (221)
Q Consensus 187 rIvVVPL-FL~~G~Hv~~DIP 206 (221)
+|+|+|. |++.-..+..||-
T Consensus 354 ~VlvvPigFvSDhiETL~EiD 374 (485)
T PLN02449 354 SLLAVPISFVSEHIETLEEID 374 (485)
T ss_pred eEEEECCcccccchHHHHHHH
Confidence 9999995 5555666666664
No 30
>PRK12435 ferrochelatase; Provisional
Probab=95.21 E-value=0.063 Score=49.41 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=29.9
Q ss_pred ceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccc
Q 027626 159 LIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (221)
Q Consensus 159 ~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLF 194 (221)
..|..|+- ++.|.++|++++|.++|+++|+++|++
T Consensus 79 ~~V~~amr-y~~P~i~~~l~~l~~~g~~~iv~lpLy 113 (311)
T PRK12435 79 FKLYLGLK-HIEPFIEDAVEQMHNDGIEEAISIVLA 113 (311)
T ss_pred ceEEEEec-CCCCCHHHHHHHHHHcCCCeEEEEECC
Confidence 34666654 688999999999999999999999976
No 31
>PLN02449 ferrochelatase
Probab=94.90 E-value=0.049 Score=53.34 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=41.9
Q ss_pred ecCCCCchh-HHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccc
Q 027626 133 DHGSRRRES-NLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (221)
Q Consensus 133 aHGSrdpea-n~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLF 194 (221)
+-||.-.+. ....+.+.+.|.+......|.+|+- +..|.++|+++++.+.|+++|+++|++
T Consensus 153 GGgSPL~~iT~~Qa~~Lq~~L~~~~~~~~V~~aMR-Y~~P~iedal~~l~~~G~~~iVvLPLY 214 (485)
T PLN02449 153 GGGSPLRKITDEQAEALAKALEAKNLPAKVYVGMR-YWHPFTEEAIDQIKADGITKLVVLPLY 214 (485)
T ss_pred CCCCchHHHHHHHHHHHHHHHhccCCCeEEEEhhh-cCCCCHHHHHHHHHhcCCCeEEEEECC
Confidence 566754333 2233344444543333346777655 578999999999999999999999996
No 32
>PLN02757 sirohydrochlorine ferrochelatase
Probab=93.53 E-value=0.015 Score=48.44 Aligned_cols=74 Identities=7% Similarity=0.033 Sum_probs=50.9
Q ss_pred HHHHHHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCCcCCCCCCCCCCCCccccCCCcccccccccCCCCC
Q 027626 42 LILCKITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRD 121 (221)
Q Consensus 42 ~~~~~~~~~~h~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 121 (221)
++=.+|..+.|.+.|||+.+++.+.+.| .+++. ++ .++|+ ||. +. .....|..++-....
T Consensus 77 VvP~FL~~G~H~~~DIp~~v~~~~~~~p-------~~~i~-~~-~pLG~-~p~-----l~-----~ll~~Ri~eal~~~~ 136 (154)
T PLN02757 77 VSPFFLSPGRHWQEDIPALTAEAAKEHP-------GVKYL-VT-APIGL-HEL-----MV-----DVVNDRIKYCLSHVA 136 (154)
T ss_pred EEEhhhcCCcchHhHHHHHHHHHHHHCC-------CcEEE-EC-CCCCC-CHH-----HH-----HHHHHHHHHHhhccc
Confidence 3446789999999999999999999988 67777 77 66999 887 77 444455555532211
Q ss_pred CCCCCceEEEEecCC
Q 027626 122 GVGDKDGVIIVDHGS 136 (221)
Q Consensus 122 ~~~~~~aLLLVaHGS 136 (221)
...++..+.+|.|-
T Consensus 137 -~~~~~~~~~~~~~~ 150 (154)
T PLN02757 137 -GDADECDVCAGTGK 150 (154)
T ss_pred -CCCCccceeecccc
Confidence 12344556666553
No 33
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=93.22 E-value=0.0074 Score=48.79 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcccCCCCCccchHHhhccChhhhcC-CCceeeeeeccCCcCCCCCC
Q 027626 40 IALILCKITSSLHKPSETPNSWKADQNMSVESLAL-SPQFTVKRCSIGEVGTKNPI 94 (221)
Q Consensus 40 ~~~~~~~~~~~~h~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~p~ 94 (221)
|..+..+|++++|++.|||+.+..++.++..+.-. ....++. ++ +++|+ ||.
T Consensus 61 ivVvPlFL~~G~Hv~~DiP~~l~~~~~~~~~~~~~~~~~~~i~-~~-~pLG~-~p~ 113 (125)
T cd03415 61 IIIALAFLGRGNHVARDIMGELGVSRFYKWVMSKYGGKEILVY-VT-EPLAD-SPL 113 (125)
T ss_pred EEEehhhccCCcchHHHHHHHHHhhcccchhhhccCCCCceEE-Ee-CCCCC-CHH
Confidence 45557789999999999999999854333211111 1135566 67 56999 887
No 34
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=89.54 E-value=0.038 Score=41.69 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=33.7
Q ss_pred HHHHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCCcCCCCCC
Q 027626 44 LCKITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPI 94 (221)
Q Consensus 44 ~~~~~~~~h~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~ 94 (221)
=.+|..++|.+.|||+.+...+.+.| .+++. ++ .++|+ ||.
T Consensus 58 P~fL~~G~h~~~DIp~~l~~~~~~~~-------~~~v~-~~-~pLG~-~p~ 98 (105)
T PF01903_consen 58 PYFLFPGYHVKRDIPEALAEARERHP-------GIEVR-VA-PPLGP-HPL 98 (105)
T ss_dssp EESSSSSHHHHCHHHHHHCHHHHCST-------TEEEE-E----GGG-SCC
T ss_pred eeeecCccchHhHHHHHHHHHHhhCC-------ceEEE-EC-CCCCC-CHH
Confidence 35678999999999999999999999 77788 78 66999 886
No 35
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=86.37 E-value=0.14 Score=47.94 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=41.5
Q ss_pred HHHHHHHHhhcccCCCCCccchHHhhccChh-hhcCCCceeeeeeccCCcCCCCCCCCCCCCccccCCCccccccccc
Q 027626 40 IALILCKITSSLHKPSETPNSWKADQNMSVE-SLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIK 116 (221)
Q Consensus 40 ~~~~~~~~~~~~h~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~l~~~ 116 (221)
|.++-.+|+.++|++.|||+.++.++.++-+ +.+-...+.+. ++ ++||+ ||. +. ....+|+.++
T Consensus 67 IvVvPlFL~~G~Hv~~DIP~~L~~~~~~~~~~~~~~~~~i~i~-l~-~pLG~-~p~-----l~-----~ll~~Rv~ea 131 (335)
T PRK05782 67 VIIALAFLGRGNHVFRDIMGELGVQRLNSWEVSKISGKEVEFY-VT-EPLSD-SPL-----VG-----LALYYRLARA 131 (335)
T ss_pred EEEecccccCCcchhhhHHHHHHHhhhcchhhhhcCCCceeEE-EC-CCCCC-ChH-----HH-----HHHHHHHHHH
Confidence 4455668899999999999999975433211 11112235555 66 56999 887 77 4455565554
No 36
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=85.68 E-value=5.8 Score=37.17 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=60.5
Q ss_pred CCceEEEEecCCCCch------hHHHHHHHHHHHHHHcC--CceEEEEEee------cCCCCHHHHHHHHHHcCCCeEEE
Q 027626 125 DKDGVIIVDHGSRRRE------SNLMLKQFVAMFREKTG--YLIVEPAHME------LAEPSIKDAFGSCVQQGANRVIV 190 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpe------an~~~~~LA~~L~~~~~--~~~V~vAFLE------~a~PsLeeaL~~L~~~G~~rIvV 190 (221)
++.-+|+-+||=.... .......-++.+++..+ .....++|-+ =-+|+.+|.+++|.++|.++|+|
T Consensus 183 ~~~~llfSaHglP~~~~~~GDpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv 262 (320)
T COG0276 183 DDDVLLFSAHGLPKRYIDEGDPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIV 262 (320)
T ss_pred CCeEEEEecCCCchhhhhcCCchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Confidence 4567999999986521 23455666777777777 5567777765 23699999999999999999999
Q ss_pred Ecc-cccCcccchHHHHhcc
Q 027626 191 SPF-FLFPGRHWCQVVLSNF 209 (221)
Q Consensus 191 VPL-FL~~G~Hv~~DIP~~l 209 (221)
+|. |.+.=..+..||-.+.
T Consensus 263 ~pigFvsDhlETL~Eid~e~ 282 (320)
T COG0276 263 VPIGFVSDHLETLYEIDHEY 282 (320)
T ss_pred ECCchhhhhHHHHHHHHHHH
Confidence 995 4444455556665443
No 37
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=81.63 E-value=0.48 Score=37.20 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=30.7
Q ss_pred HHHHHHHhhcccCCCCCccchHHhh-------ccChhhhcCCCceeeeeeccCCcCCCCCC
Q 027626 41 ALILCKITSSLHKPSETPNSWKADQ-------NMSVESLALSPQFTVKRCSIGEVGTKNPI 94 (221)
Q Consensus 41 ~~~~~~~~~~~h~~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~p~ 94 (221)
.++=.+|.++.|.+.|+|..+...+ ...| ..++. ++ .++|+ ||.
T Consensus 64 ~vvPlfl~~G~h~~~dip~~~~~~~~~~~~~~~~~~-------~~~i~-~~-~~lG~-~p~ 114 (126)
T PRK00923 64 IVVPVFLAHGVHTKRDIPRILGLDEGEKEEIEEDGK-------DVEIV-YA-EPLGA-DER 114 (126)
T ss_pred EEEchhhccCcccccccchhhhcccccccchhhcCC-------CeEEE-Ec-CCCCC-CHH
Confidence 3344568899999999999777433 2233 55555 66 56999 887
No 38
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.29 E-value=15 Score=29.11 Aligned_cols=70 Identities=9% Similarity=0.058 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCc------ccchHHHHhc
Q 027626 139 RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPG------RHWCQVVLSN 208 (221)
Q Consensus 139 pean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G------~Hv~~DIP~~ 208 (221)
|.+.+.++.|...+++++|..+.+.-|++...|..++...++.++=.+.=..-|+.+..+ .--.+||-..
T Consensus 23 PtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiVaeGnprlKdiy~~ 98 (106)
T COG4837 23 PTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIVAEGNPRLKDIYRV 98 (106)
T ss_pred CcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEeecCCchHHHHHHH
Confidence 677889999999999999999999999999888899888887765444455667665544 4444555543
No 39
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=65.19 E-value=8 Score=30.27 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcc
Q 027626 139 RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGR 199 (221)
Q Consensus 139 pean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~ 199 (221)
|.+.++++.|...|.+++|...+..-|+.+..|.=++.-+++.++=.+.=..-|+.+..|.
T Consensus 16 PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~e 76 (93)
T PF07315_consen 16 PSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDE 76 (93)
T ss_dssp --HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTE
T ss_pred CCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCE
Confidence 6788999999999999999999999999998886655444444332233355666666653
No 40
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=63.16 E-value=0.94 Score=34.77 Aligned_cols=39 Identities=5% Similarity=-0.041 Sum_probs=29.3
Q ss_pred HHHHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCCcCCCCCC
Q 027626 44 LCKITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPI 94 (221)
Q Consensus 44 ~~~~~~~~h~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~ 94 (221)
=.+|..+.|.. |+|..+...+.. | ...+. ++ .++|+ ||.
T Consensus 66 P~fL~~G~h~~-~i~~~~~~~~~~-~-------~~~i~-~~-~pLG~-~~~ 104 (117)
T cd03414 66 PYLLFTGVLMD-RIEEQVAELAAE-P-------GIEFV-LA-PPLGP-HPE 104 (117)
T ss_pred echhcCCchHH-HHHHHHHHHHhC-C-------CceEE-EC-CCCCC-CHH
Confidence 34678899986 899988888766 5 55666 66 56999 876
No 41
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=61.30 E-value=26 Score=33.48 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=47.7
Q ss_pred eEEEEecCCCCchhH-HHHHHHHHHHHHHcCC---ceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccc
Q 027626 128 GVIIVDHGSRRRESN-LMLKQFVAMFREKTGY---LIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (221)
Q Consensus 128 aLLLVaHGSrdpean-~~~~~LA~~L~~~~~~---~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLF 194 (221)
.--=||=||.-..|. ..-+.+...|.++.|. ..+.+||-- ..|--+|+++++.+.|.+|+++.|..
T Consensus 94 ~Y~~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY-~~PlTEea~~qikkd~v~r~VafsqY 163 (395)
T KOG1321|consen 94 QYREIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRY-AHPLTEEALEQIKKDGVTRAVAFSQY 163 (395)
T ss_pred HHHhccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeee-cCcccHHHHHHHHhcCceeEEeeccC
Confidence 334467788765553 3345666667666643 357788874 68999999999999999999999853
No 42
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=60.30 E-value=3.5 Score=30.80 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=29.3
Q ss_pred HHHHHHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCCcC
Q 027626 42 LILCKITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVG 89 (221)
Q Consensus 42 ~~~~~~~~~~h~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 89 (221)
++=.+|..+.|.+.|||+.++..+...+ ..+++ ++ +++|
T Consensus 63 vvPlfl~~G~h~~~dip~~~~~~~~~~~-------~~~i~-~~-~plG 101 (101)
T cd03416 63 VVPLFLLAGGHVKEDIPAALAAARARHP-------GVRIR-YA-PPLG 101 (101)
T ss_pred EEeeEeCCCccccccHHHHHHHHHHHCC-------CeEEE-ec-CCCC
Confidence 3445788999999999999999887666 56666 55 4455
No 43
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=45.32 E-value=47 Score=28.54 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=43.5
Q ss_pred CCceEEEEecCCCCch----hHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEE----ccccc
Q 027626 125 DKDGVIIVDHGSRRRE----SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVS----PFFLF 196 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpe----an~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVV----PLFL~ 196 (221)
.+.-|++++||+||.. +...+.+|.+.+++..-.. ..+.+...-.- .+. +..+++. |-.+-
T Consensus 131 ~~~~iLVCtHg~RD~rCg~~Gp~l~~~l~~~~~~~~l~~-~~V~~iSHiGG------Hkf----AgNvIiy~~~~p~g~w 199 (230)
T PF06999_consen 131 DKPLILVCTHGKRDKRCGILGPPLARELEKELRERGLSR-DRVWEISHIGG------HKF----AGNVIIYSKPKPDGIW 199 (230)
T ss_pred CCCEEEEcCCCCcCCchhcccHHHHHHHHHHhhhcCCcc-ceEEEeccccc------cee----cCeEEEEecCCCcEEE
Confidence 4667899999999976 3456666666666552211 11333331100 011 2367777 77666
Q ss_pred CcccchHHHHhccc
Q 027626 197 PGRHWCQVVLSNFL 210 (221)
Q Consensus 197 ~G~Hv~~DIP~~l~ 210 (221)
=|+-.-+|++.+++
T Consensus 200 yGrv~p~~v~~iv~ 213 (230)
T PF06999_consen 200 YGRVTPEDVEGIVD 213 (230)
T ss_pred EEeeCHHHHHHHHH
Confidence 77766677766655
No 44
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.08 E-value=11 Score=21.70 Aligned_cols=9 Identities=67% Similarity=1.372 Sum_probs=7.3
Q ss_pred ccccCCCCc
Q 027626 22 QFPCHPGPV 30 (221)
Q Consensus 22 ~~~~~~~~~ 30 (221)
+.+||+||-
T Consensus 7 ~~~CH~G~C 15 (20)
T PF01422_consen 7 QQLCHPGPC 15 (20)
T ss_pred CCcccCCcC
Confidence 568999985
No 45
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=42.66 E-value=1.4e+02 Score=26.06 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=38.1
Q ss_pred CceEEEEecCCCCch-hHHHHHHHHHHHHHHcCCceEEEEEeecC---C---------CCHHHHHHHHHHc--CCCeEEE
Q 027626 126 KDGVIIVDHGSRRRE-SNLMLKQFVAMFREKTGYLIVEPAHMELA---E---------PSIKDAFGSCVQQ--GANRVIV 190 (221)
Q Consensus 126 ~~aLLLVaHGSrdpe-an~~~~~LA~~L~~~~~~~~V~vAFLE~a---~---------PsLeeaL~~L~~~--G~~rIvV 190 (221)
+.++|++.||+.... ....+..+++.+.+. ++..+.+=+-.++ . .++.++++.+.++ |.++|++
T Consensus 26 ~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~-G~~v~~~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~g~~~i~l 104 (274)
T TIGR03100 26 TTGVLIVVGGPQYRVGSHRQFVLLARRLAEA-GFPVLRFDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAPHLRRIVA 104 (274)
T ss_pred CCeEEEEeCCccccCCchhHHHHHHHHHHHC-CCEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 458888888875432 344456778888764 3322222111111 0 1355666666554 6777887
Q ss_pred Ecccc
Q 027626 191 SPFFL 195 (221)
Q Consensus 191 VPLFL 195 (221)
+-.-+
T Consensus 105 ~G~S~ 109 (274)
T TIGR03100 105 WGLCD 109 (274)
T ss_pred EEECH
Confidence 76533
No 46
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=42.29 E-value=61 Score=31.06 Aligned_cols=78 Identities=13% Similarity=0.219 Sum_probs=52.2
Q ss_pred CCCCceEEEEecCCCC-------c---hhHHHHHHHHHHHHHHcCCc---eEEEEEeecCCCCHHHHHHHHHHcCCCeEE
Q 027626 123 VGDKDGVIIVDHGSRR-------R---ESNLMLKQFVAMFREKTGYL---IVEPAHMELAEPSIKDAFGSCVQQGANRVI 189 (221)
Q Consensus 123 ~~~~~aLLLVaHGSrd-------p---ean~~~~~LA~~L~~~~~~~---~V~vAFLE~a~PsLeeaL~~L~~~G~~rIv 189 (221)
.+.+.-|++-|||=.- | +-.+.+..+-++|..+.++. .-++|=+.--.|--+|+++.|-++|.+.++
T Consensus 224 ~r~~VVIlFSAHslPms~Vn~GDpY~~Ei~atv~~iMeeL~~~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll 303 (395)
T KOG1321|consen 224 VRDDVVILFSAHSLPMSVVNAGDPYPAEIAATVDLIMEELKYKNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLL 303 (395)
T ss_pred ccccEEEEEecCCCcHHHHhcCCCcHHHHHHHHHHHHHHhccCCcchhhhhcccCCccccccchHHHHHHHHhhcccceE
Confidence 4456677778887643 1 23445555666666665553 224444444568899999999999999999
Q ss_pred EEcccccCcccc
Q 027626 190 VSPFFLFPGRHW 201 (221)
Q Consensus 190 VVPLFL~~G~Hv 201 (221)
+||.-+.. .|+
T Consensus 304 ~VPIaFvS-eHI 314 (395)
T KOG1321|consen 304 LVPIAFVS-EHI 314 (395)
T ss_pred EEeehhhh-HHH
Confidence 99975543 454
No 47
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=40.89 E-value=1.5e+02 Score=22.71 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=19.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEee
Q 027626 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME 167 (221)
Q Consensus 128 aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE 167 (221)
++||++||+ ....+...++.+-.........++|.+
T Consensus 1 giii~sHG~----~A~g~~~~~~~i~G~~~~~i~~~~~~~ 36 (116)
T PF03610_consen 1 GIIIASHGS----LAEGLLESAEMILGEDQDNIEAVDLYP 36 (116)
T ss_dssp EEEEEEETT----HHHHHHHHHHHHHTSTCSSEEEEEETT
T ss_pred CEEEEECcH----HHHHHHHHHHHHcCCCcccEEEEECcC
Confidence 589999994 344555555655433111233455553
No 48
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=39.40 E-value=2e+02 Score=23.07 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=40.0
Q ss_pred EEEEecC-CCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHH-cCCCeEEEEccccc
Q 027626 129 VIIVDHG-SRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQ-QGANRVIVSPFFLF 196 (221)
Q Consensus 129 LLLVaHG-Srdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~-~G~~rIvVVPLFL~ 196 (221)
++++-|. ..-.+.....-..+.+|++..+. .|....+. ..+..++.++++.. .|+++|+.+.---.
T Consensus 3 lv~~e~~~~~l~~~~~e~l~~A~~La~~~g~-~v~av~~G-~~~~~~~~l~~~l~~~G~d~v~~~~~~~~ 70 (164)
T PF01012_consen 3 LVFAEHRDGRLNPVSLEALEAARRLAEALGG-EVTAVVLG-PAEEAAEALRKALAKYGADKVYHIDDPAL 70 (164)
T ss_dssp EEEE-EETCEE-HHHHHHHHHHHHHHHCTTS-EEEEEEEE-TCCCHHHHHHHHHHSTTESEEEEEE-GGG
T ss_pred EEEEECCCCccCHHHHHHHHHHHHHHhhcCC-eEEEEEEe-cchhhHHHHhhhhhhcCCcEEEEecCccc
Confidence 4455543 22234555666777788877654 45555554 34778888877776 88889888865433
No 49
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=37.66 E-value=2.8e+02 Score=24.21 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=38.0
Q ss_pred eEEEEecCCC-CchhHHHHHHHHHHHHHHcCCceEEEEEeecC-C-CCHHHHHHHHHHcCCCeEEE
Q 027626 128 GVIIVDHGSR-RRESNLMLKQFVAMFREKTGYLIVEPAHMELA-E-PSIKDAFGSCVQQGANRVIV 190 (221)
Q Consensus 128 aLLLVaHGSr-dpean~~~~~LA~~L~~~~~~~~V~vAFLE~a-~-PsLeeaL~~L~~~G~~rIvV 190 (221)
++|+ . |+. |..+|....+=..++++..+ +++-+.|.. . -..++.++.+.++|++=|+.
T Consensus 3 a~l~-~-g~~~D~~~n~~~~~G~~~~~~~~g---v~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~ 63 (258)
T cd06353 3 AFVY-V-GPIGDQGWNYAHDEGRKAAEKALG---VEVTYVENVPEGADAERVLRELAAQGYDLIFG 63 (258)
T ss_pred EEEE-e-CCCCccchhHHHHHHHHHHHHhcC---CeEEEEecCCchHhHHHHHHHHHHcCCCEEEE
Confidence 4555 3 444 66788876666666666533 456667643 2 24788889999999876665
No 50
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=36.49 E-value=2.5e+02 Score=23.29 Aligned_cols=81 Identities=17% Similarity=0.123 Sum_probs=45.1
Q ss_pred EecCCCCchhHHHHHHHHHHHHHHcCCceEEE-EEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHHHhccc
Q 027626 132 VDHGSRRRESNLMLKQFVAMFREKTGYLIVEP-AHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVVLSNFL 210 (221)
Q Consensus 132 VaHGSrdpean~~~~~LA~~L~~~~~~~~V~v-AFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DIP~~l~ 210 (221)
|-....++-+......+.+..++ .+.. +.+ .+-+.....-.+.++.+.++|++-|++.|..- .....-+-...+
T Consensus 4 i~~~~~~~~~~~~~~g~~~~a~~-~g~~-~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~---~~~~~~l~~~~~ 78 (257)
T PF13407_consen 4 IVPSMDNPFWQQVIKGAKAAAKE-LGYE-VEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP---DSLAPFLEKAKA 78 (257)
T ss_dssp EESSSSSHHHHHHHHHHHHHHHH-HTCE-EEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSST---TTTHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHH-cCCE-EEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH---HHHHHHHHHHhh
Confidence 33444445445455555555554 4543 344 34443334456677888889999899888743 333334444444
Q ss_pred cCcEEEe
Q 027626 211 DNISLNF 217 (221)
Q Consensus 211 p~I~l~~ 217 (221)
.+|.+..
T Consensus 79 ~gIpvv~ 85 (257)
T PF13407_consen 79 AGIPVVT 85 (257)
T ss_dssp TTSEEEE
T ss_pred cCceEEE
Confidence 5666554
No 51
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=35.93 E-value=99 Score=23.99 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=13.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHH
Q 027626 128 GVIIVDHGSRRRESNLMLKQFVAMF 152 (221)
Q Consensus 128 aLLLVaHGSrdpean~~~~~LA~~L 152 (221)
++||++||. ....+...++.+
T Consensus 2 ~ili~sHG~----~A~gi~~~~~~i 22 (122)
T cd00006 2 GIIIATHGG----FASGLLNSAEMI 22 (122)
T ss_pred eEEEEcCHH----HHHHHHHHHHHh
Confidence 589999993 334444555555
No 52
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=35.59 E-value=1.8e+02 Score=23.50 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=21.5
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEee
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME 167 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE 167 (221)
+.+|||++||-. ....+..+++++. .....+..++.+
T Consensus 1 MvGIVlVSHs~~---lA~gl~~~~~~i~--~~~~i~~~gg~~ 37 (124)
T PRK14484 1 MVGIVIVSHSKK---IAEGVKDLIKQMA--PDVPIIYAGGTE 37 (124)
T ss_pred CeeEEEEeCcHH---HHHHHHHHHHHhh--CCCCEEEecCCC
Confidence 368999999832 3445556666664 123334555554
No 53
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=33.19 E-value=1.1e+02 Score=22.76 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=34.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecC----CCCHHHHHHHHH--HcCCCeEEEEcc
Q 027626 129 VIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELA----EPSIKDAFGSCV--QQGANRVIVSPF 193 (221)
Q Consensus 129 LLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a----~PsLeeaL~~L~--~~G~~rIvVVPL 193 (221)
+|++.||.... ...+..+++.+.+. ++..+.+-+-... .+.++++++.+. ....++|+++-+
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~ 68 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQ-GYAVVAFDYPGHGDSDGADAVERVLADIRAGYPDPDRIILIGH 68 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHT-TEEEEEESCTTSTTSHHSHHHHHHHHHHHHHHCTCCEEEEEEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHC-CCEEEEEecCCCCccchhHHHHHHHHHHHhhcCCCCcEEEEEE
Confidence 57889998754 34577888888776 5432222111111 123455555432 136678887765
No 54
>PLN02691 porphobilinogen deaminase
Probab=32.80 E-value=2.9e+02 Score=26.47 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=48.9
Q ss_pred CCCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCc----eEEEEEeecCCC-CHHH-------------HHHHHHHcC
Q 027626 123 VGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYL----IVEPAHMELAEP-SIKD-------------AFGSCVQQG 184 (221)
Q Consensus 123 ~~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~----~V~vAFLE~a~P-sLee-------------aL~~L~~~G 184 (221)
...+..|.|-..||.-.-+ ..+.+++.|++.+|.. .+++-.+....- .... -++...-.|
T Consensus 38 ~~~~~~irIGTR~S~LAl~--Qt~~V~~~L~~~~p~~~~~~~~eiv~i~T~GD~~~d~pL~~iGgkGlFtkele~aLl~g 115 (351)
T PLN02691 38 KTDVAPIRIGTRGSPLALA--QAYETRDLLKAAHPELAEEGALEIVIIKTTGDKILDQPLADIGGKGLFTKEIDDALLSG 115 (351)
T ss_pred ccCCceEEEEeCCcHHHHH--HHHHHHHHHHHhCCCcCCCCCEEEEEEeecCCccccchHHHcCCceEeHHHHHHHHHcC
Confidence 4455678898899865533 4456778888876643 466666642111 1111 222222233
Q ss_pred CCeEEEEcccccCcccchHHHHhccccCcEEE
Q 027626 185 ANRVIVSPFFLFPGRHWCQVVLSNFLDNISLN 216 (221)
Q Consensus 185 ~~rIvVVPLFL~~G~Hv~~DIP~~l~p~I~l~ 216 (221)
--.+. .|..+|+|..+.+++.+.
T Consensus 116 ~iDiA---------VHSlKDlP~~l~~gl~i~ 138 (351)
T PLN02691 116 RIDIA---------VHSMKDVPTYLPEGTILP 138 (351)
T ss_pred CCCEE---------EeccccCCCCCCCCcEEE
Confidence 32333 588899999988877664
No 55
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=32.74 E-value=62 Score=31.98 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHcCCCeEEEEc---ccccCcccchHHHHhccc-cCcEEEeecC
Q 027626 170 EPSIKDAFGSCVQQGANRVIVSP---FFLFPGRHWCQVVLSNFL-DNISLNFYRH 220 (221)
Q Consensus 170 ~PsLeeaL~~L~~~G~~rIvVVP---LFL~~G~Hv~~DIP~~l~-p~I~l~~a~p 220 (221)
+-+.+|+...|.. +++|+||| +-.+...|.-+||.+.++ .|++++|+=|
T Consensus 294 ~~~~~~~a~~l~~--A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIH 346 (463)
T PF02233_consen 294 EISAEEVAEMLAN--AKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIH 346 (463)
T ss_dssp BESHHHHHHHHHH---SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred ccCHHHHHHHHHh--cCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 3467888888764 78999999 456777999999999998 6999999865
No 56
>smart00438 ZnF_NFX Repressor of transcription.
Probab=31.01 E-value=23 Score=21.56 Aligned_cols=10 Identities=60% Similarity=1.182 Sum_probs=7.4
Q ss_pred ccccCCCCcc
Q 027626 22 QFPCHPGPVN 31 (221)
Q Consensus 22 ~~~~~~~~~~ 31 (221)
+-+||+||--
T Consensus 7 ~~~CH~G~C~ 16 (26)
T smart00438 7 QKLCHPGPCP 16 (26)
T ss_pred CCCCCCCcCc
Confidence 4679999853
No 57
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.48 E-value=3.3e+02 Score=22.84 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=37.5
Q ss_pred EecCC-CCchhHHHHHHHHHHHHHHcCCceEEEEEeec-CCCCHHHHHHHHHHcCCCeEEEEcc
Q 027626 132 VDHGS-RRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEPSIKDAFGSCVQQGANRVIVSPF 193 (221)
Q Consensus 132 VaHGS-rdpean~~~~~LA~~L~~~~~~~~V~vAFLE~-a~PsLeeaL~~L~~~G~~rIvVVPL 193 (221)
+-+.. .++-+...++.+.+.+++. +. .+.+.+.+. ......+.++.+..++++-|++.|.
T Consensus 5 i~~~~~~~~~~~~~~~g~~~~~~~~-g~-~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (271)
T cd06312 5 VTHGPAGDPFWTVVKNGAEDAAKDL-GV-DVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIP 66 (271)
T ss_pred ecCCCCCCcHHHHHHHHHHHHHHHh-CC-EEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 33555 5666777777777777653 43 355555443 2223446777888888888888874
No 58
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=29.99 E-value=1.7e+02 Score=27.00 Aligned_cols=57 Identities=30% Similarity=0.487 Sum_probs=36.9
Q ss_pred CCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEc
Q 027626 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSP 192 (221)
Q Consensus 124 ~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVP 192 (221)
..+.++|-|+-|. .+++.+++ .+...|-.+- ....|+.+|.+++..+-++++|+|+|
T Consensus 94 ~~~~~vVAv~~g~----------g~~~lf~~-~Gv~~vi~gg-qt~nPS~~dl~~Ai~~~~a~~VivLP 150 (313)
T PF13684_consen 94 EKDRGVVAVAPGE----------GLAELFRS-LGVDVVISGG-QTMNPSTEDLLNAIEKVGADEVIVLP 150 (313)
T ss_pred cCCeEEEEEecCc----------cHHHHHHh-CCCeEEEeCC-CCCCCCHHHHHHHHHhCCCCeEEEEe
Confidence 3456888888765 33444533 3432232221 11369999999999888999999999
No 59
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=29.42 E-value=64 Score=31.91 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHcCCCeEEEEc---ccccCcccchHHHHhccc-cCcEEEeecC
Q 027626 170 EPSIKDAFGSCVQQGANRVIVSP---FFLFPGRHWCQVVLSNFL-DNISLNFYRH 220 (221)
Q Consensus 170 ~PsLeeaL~~L~~~G~~rIvVVP---LFL~~G~Hv~~DIP~~l~-p~I~l~~a~p 220 (221)
+-+.+|+...|. .+++|+||| +=.+...|.-+|+.+.++ .+++++||=|
T Consensus 293 ~~~~~d~a~~l~--~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIH 345 (462)
T PRK09444 293 ETTAEEVAEMLK--NSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIH 345 (462)
T ss_pred ecCHHHHHHHHH--hCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 345777777775 478999999 445667899999999998 7999999865
No 60
>PRK13604 luxD acyl transferase; Provisional
Probab=29.01 E-value=2.6e+02 Score=26.03 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEee---------------cCCCCHHHHHHHHHHcCCCeE
Q 027626 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME---------------LAEPSIKDAFGSCVQQGANRV 188 (221)
Q Consensus 124 ~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE---------------~a~PsLeeaL~~L~~~G~~rI 188 (221)
+.+..+++++||-.... ..+..+|+.|.+. |+..++.=|-. .+.-++..+++.+.+++.++|
T Consensus 34 ~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~-G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~~~~I 110 (307)
T PRK13604 34 PKKNNTILIASGFARRM--DHFAGLAEYLSSN-GFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRGINNL 110 (307)
T ss_pred CCCCCEEEEeCCCCCCh--HHHHHHHHHHHHC-CCEEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcCCCce
Confidence 34557899999998754 3488999999865 55433433321 111135555888888787888
Q ss_pred EEEcccc
Q 027626 189 IVSPFFL 195 (221)
Q Consensus 189 vVVPLFL 195 (221)
.++-.-+
T Consensus 111 ~LiG~Sm 117 (307)
T PRK13604 111 GLIAASL 117 (307)
T ss_pred EEEEECH
Confidence 8776533
No 61
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=28.46 E-value=4.3e+02 Score=23.63 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=52.0
Q ss_pred EEEEecCCC-CchhHHHHHHHHHHHHHHcCCceEEEEEeecCC---CCHHHHHHHHHHcCCCeEEEEcccccCcccchHH
Q 027626 129 VIIVDHGSR-RRESNLMLKQFVAMFREKTGYLIVEPAHMELAE---PSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQV 204 (221)
Q Consensus 129 LLLVaHGSr-dpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~---PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~D 204 (221)
+.++.-|.. |..+|....+=..++++.+ ..+++.+.|... ...+++++.+.++|++=|+. .|....+.
T Consensus 4 v~~~~~g~~~D~g~n~~~~~G~~~~~~~~--~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~------~g~~~~~~ 75 (306)
T PF02608_consen 4 VALLDPGGINDKGFNQSAYEGLKRAEKEL--DGIEIIYVENVPETDADYEEAIRQLADQGYDLIIG------HGFEYSDA 75 (306)
T ss_dssp EEEESSS-CCCSSHHHHHHHHHHHHHHHC--TTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEE------ESGGGHHH
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHc--CCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEE------ccHHHHHH
Confidence 444445554 5678888887777788776 247888888543 36888899999999875543 34444445
Q ss_pred HHhccc--cCcEEEe
Q 027626 205 VLSNFL--DNISLNF 217 (221)
Q Consensus 205 IP~~l~--p~I~l~~ 217 (221)
+.+.-. |+++|.+
T Consensus 76 ~~~vA~~yPd~~F~~ 90 (306)
T PF02608_consen 76 LQEVAKEYPDTKFII 90 (306)
T ss_dssp HHHHHTC-TTSEEEE
T ss_pred HHHHHHHCCCCEEEE
Confidence 554433 7877765
No 62
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=27.19 E-value=58 Score=24.12 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHcCCCeEEEEcc
Q 027626 170 EPSIKDAFGSCVQQGANRVIVSPF 193 (221)
Q Consensus 170 ~PsLeeaL~~L~~~G~~rIvVVPL 193 (221)
+-.+.+.+++|.+.|++.|++.|+
T Consensus 49 ~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 49 EKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp CCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCEEEEEec
Confidence 567999999999999999999986
No 63
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=26.73 E-value=4.5e+02 Score=23.94 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=42.7
Q ss_pred CCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcc
Q 027626 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (221)
Q Consensus 124 ~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPL 193 (221)
+...-||+++.|...- ...--+++..|++. +. ...+.+- ..++++|.++.+...|+.-|+++==
T Consensus 3 ~~RCDVLV~S~~~~~L--~~~~~~iv~~LW~~-gI-sAd~~~~--~~~S~Eel~~~~~~~gi~wiViikq 66 (273)
T PF12745_consen 3 PSRCDVLVCSFGPSSL--RTEGIEIVQELWAA-GI-SADLMYD--ASPSQEELQSYCREDGISWIVIIKQ 66 (273)
T ss_pred CCcceEEEEeCChhHH--HHHHHHHHHHHHHC-CC-ceEeccc--cCCCHHHHHHHHHHCCCCEEEEEec
Confidence 3455688888776432 23334667777764 22 3455444 3589999999999999998887643
No 64
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=26.28 E-value=1.8e+02 Score=23.27 Aligned_cols=22 Identities=18% Similarity=0.496 Sum_probs=13.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHH
Q 027626 128 GVIIVDHGSRRRESNLMLKQFVAMF 152 (221)
Q Consensus 128 aLLLVaHGSrdpean~~~~~LA~~L 152 (221)
+|||++||.+- ...+..+++++
T Consensus 2 gIvivSHs~~l---A~Gi~~~~~~~ 23 (125)
T TIGR02364 2 GIVLVSHSKKI---AEGIKELIKQM 23 (125)
T ss_pred cEEEEeCCHHH---HHHHHHHHHHH
Confidence 68999998643 33444555555
No 65
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=25.65 E-value=4.4e+02 Score=22.75 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=41.1
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEE
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVI 189 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIv 189 (221)
+-+.+|... ++..+...+.+.+.+++. +...|..-.++....++...++++.+.+.+-|+
T Consensus 136 ~~v~iv~~~--~~~g~~~~~~~~~~~~~~-G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~ 195 (343)
T PF13458_consen 136 KKVAIVYPD--DPYGRSLAEAFRKALEAA-GGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVV 195 (343)
T ss_dssp SEEEEEEES--SHHHHHHHHHHHHHHHHT-TCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEE
T ss_pred cEEEEEecC--chhhhHHHHHHHHHHhhc-CceeccceecccccccchHHHHHHhhcCCCEEE
Confidence 456666544 456666777777777765 555555666666778899999999988887544
No 66
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=24.69 E-value=2e+02 Score=28.78 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=38.1
Q ss_pred CCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcc
Q 027626 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPL 193 (221)
.+.++|-|+-|. .+++.+++. +-..|..+ -....|+.+|.++...+-++++|+|+|=
T Consensus 313 ~~~~ivAv~~g~----------g~~~~f~~~-Ga~~vi~g-gqt~nPS~~dll~ai~~~~a~~V~iLPN 369 (530)
T TIGR03599 313 KEYAIVAVAPGE----------GIAELFKSL-GADVVIEG-GQTMNPSTEDILKAIEKVNAKNVFVLPN 369 (530)
T ss_pred CCeEEEEEcCCc----------hHHHHHHHC-CCCEEEeC-CCCCCCCHHHHHHHHHhCCCCeEEEecC
Confidence 457888887775 345555543 43323221 1112699999999999999999999993
No 67
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=24.45 E-value=36 Score=32.03 Aligned_cols=17 Identities=41% Similarity=0.757 Sum_probs=14.4
Q ss_pred cCCCCccchhhchhhHH
Q 027626 25 CHPGPVNDIVSLSSSIA 41 (221)
Q Consensus 25 ~~~~~~~~~~~~~~~~~ 41 (221)
-||||||-.+.+++.+.
T Consensus 269 mHP~PvnR~~EI~~~v~ 285 (316)
T COG0540 269 MHPLPVNRVVEIASEVD 285 (316)
T ss_pred ECCCCccCCCcCchhhh
Confidence 49999999999887763
No 68
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=24.14 E-value=2.1e+02 Score=26.73 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=42.1
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCH-HHHHHHHHHcCCCeEEE
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSI-KDAFGSCVQQGANRVIV 190 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsL-eeaL~~L~~~G~~rIvV 190 (221)
-.-|.+|-|+..--....+.++.+.+++..+......-.+|...-++ .+-++.|.+.|+++|-+
T Consensus 56 i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~Gvnrisl 120 (380)
T PRK09057 56 LTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSL 120 (380)
T ss_pred cCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEE
Confidence 35789999997654566788888888887665432223345322223 36778888888888765
No 69
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=23.92 E-value=2.8e+02 Score=26.24 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=37.5
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcc
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPL 193 (221)
+..++||+-||......+.++. +++. +. .|.+--+-.-.|--.+.+.++.+ ++++|+++=-
T Consensus 273 ~ad~~iv~~Gs~~~~a~eAv~~----Lr~~-G~-~v~~l~~~~l~Pfp~~~i~~~~~-~~k~VivvEe 333 (376)
T PRK08659 273 DAEVVVVAYGSVARSARRAVKE----AREE-GI-KVGLFRLITVWPFPEEAIRELAK-KVKAIVVPEM 333 (376)
T ss_pred CCCEEEEEeCccHHHHHHHHHH----HHhc-CC-ceEEEEeCeecCCCHHHHHHHHh-cCCEEEEEeC
Confidence 4569999999986655544444 4433 22 23332222235777778888764 7888888654
No 70
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.73 E-value=2.3e+02 Score=27.75 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=59.3
Q ss_pred EEEecCCC-------CchhHHHHHHHHHHHHHHcCCceEEEEEee----cCCCCHHHHHHHHHHcCCCeEEEEcccccCc
Q 027626 130 IIVDHGSR-------RRESNLMLKQFVAMFREKTGYLIVEPAHME----LAEPSIKDAFGSCVQQGANRVIVSPFFLFPG 198 (221)
Q Consensus 130 LLVaHGSr-------dpean~~~~~LA~~L~~~~~~~~V~vAFLE----~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G 198 (221)
|=+=|||. ++...+.+.++.+++++..|...+..-|+= -++-.+++.++-+.+-+.+++.+.+|---+|
T Consensus 260 lPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpG 339 (437)
T COG0621 260 LPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPG 339 (437)
T ss_pred CccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCC
Confidence 44567773 244577888999999999898655555552 2334588888888888999999999999899
Q ss_pred ccch---HHHHhccc
Q 027626 199 RHWC---QVVLSNFL 210 (221)
Q Consensus 199 ~Hv~---~DIP~~l~ 210 (221)
.... ++||..+.
T Consensus 340 TpAa~~~~qvp~~vk 354 (437)
T COG0621 340 TPAALMPDQVPEEVK 354 (437)
T ss_pred CccccCCCCCCHHHH
Confidence 7776 36665543
No 71
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=22.74 E-value=1.7e+02 Score=26.85 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=43.3
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecC--------------CCCHHHHHHHHHHcCCCeEEEEc
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELA--------------EPSIKDAFGSCVQQGANRVIVSP 192 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a--------------~PsLeeaL~~L~~~G~~rIvVVP 192 (221)
+-++++.||++....+..+..+|.++++. +.+..+.-|-..+ .-++..+++.+.. .-.++|
T Consensus 33 ~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~-gis~fRfDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~----~nr~v~ 107 (269)
T KOG4667|consen 33 TEIVVLCHGFRSHKNAIIMKNVAKALEKE-GISAFRFDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSN----SNRVVP 107 (269)
T ss_pred ceEEEEeeccccccchHHHHHHHHHHHhc-CceEEEEEecCCCCcCCccccCcccchHHHHHHHHHHhcc----CceEEE
Confidence 46899999999888888888888888765 5555666665311 1245666666542 234566
Q ss_pred ccccC
Q 027626 193 FFLFP 197 (221)
Q Consensus 193 LFL~~ 197 (221)
..+..
T Consensus 108 vi~gH 112 (269)
T KOG4667|consen 108 VILGH 112 (269)
T ss_pred EEEee
Confidence 65554
No 72
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.56 E-value=1.8e+02 Score=25.47 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=25.0
Q ss_pred ecCCCCHHH---HHHHHHHcCCC-eEEEEcccccCc
Q 027626 167 ELAEPSIKD---AFGSCVQQGAN-RVIVSPFFLFPG 198 (221)
Q Consensus 167 E~a~PsLee---aL~~L~~~G~~-rIvVVPLFL~~G 198 (221)
|..+|++++ |+.++++.|+. ++.+.|.++.+|
T Consensus 64 E~~T~sl~~Rl~Aa~k~a~aGy~Vg~~~~PIi~~eg 99 (199)
T TIGR00620 64 EPGTSPLDKRIEAAVKVAKAGYPLGFIIAPIYIHEG 99 (199)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCeEEEEeeceEeeCC
Confidence 445677665 44677788987 899999999999
No 73
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=22.33 E-value=2.3e+02 Score=22.04 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=24.5
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCC-CHHHHHHHHHH
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-SIKDAFGSCVQ 182 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~P-sLeeaL~~L~~ 182 (221)
..+|+++||.- ...+..-++.+-..... ...++|.....| .+.+.+++..+
T Consensus 2 ~~ili~sHG~~----A~gl~~s~~~i~G~~~~-i~~i~~~~~~~~~~~~~~l~~~i~ 53 (116)
T TIGR00824 2 IAIIISGHGQA----AIALLKSAEMIFGEQNN-VGAVPFVPGENAETLQEKYNAALA 53 (116)
T ss_pred cEEEEEecHHH----HHHHHHHHHHHcCCcCC-eEEEEcCCCcCHHHHHHHHHHHHH
Confidence 46999999983 33334444444222121 234455432223 24455544444
No 74
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=22.19 E-value=4.6e+02 Score=21.72 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=36.5
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccc
Q 027626 136 SRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (221)
Q Consensus 136 Srdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLF 194 (221)
..++-+...+..+.+.+++ .++ .+.+...+.......+.++.+..++++-|++.|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 9 LENRSFARIAKRLEALARE-RGY-QLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred ccCchHHHHHHHHHHHHHH-CCC-EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4456666666677666665 354 35554443323345577888888999888888753
No 75
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=22.00 E-value=1.2e+02 Score=28.29 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=12.8
Q ss_pred ceEEEEecCCCCchh
Q 027626 127 DGVIIVDHGSRRRES 141 (221)
Q Consensus 127 ~aLLLVaHGSrdpea 141 (221)
.++++.+||+++..+
T Consensus 280 ~g~vvk~HG~s~~~a 294 (322)
T TIGR00182 280 NKLVIKSHGSSDSRA 294 (322)
T ss_pred CceEEEEcCCCCHHH
Confidence 479999999998765
No 76
>PF07203 DUF1412: Protein of unknown function (DUF1412); InterPro: IPR009853 This family consists of several Caenorhabditis elegans proteins of around 70-75 residues in length. The function of this family is unknown.
Probab=21.96 E-value=40 Score=23.76 Aligned_cols=15 Identities=47% Similarity=0.775 Sum_probs=12.7
Q ss_pred ccccccccccCCCCc
Q 027626 16 YSLSWAQFPCHPGPV 30 (221)
Q Consensus 16 ~~~~~~~~~~~~~~~ 30 (221)
-||.|||.|-|-.|.
T Consensus 32 tslGWaQVph~~SPm 46 (53)
T PF07203_consen 32 TSLGWAQVPHVYSPM 46 (53)
T ss_pred cccchhhCccccCcc
Confidence 589999999987774
No 77
>PRK06091 membrane protein FdrA; Validated
Probab=21.81 E-value=4.2e+02 Score=26.93 Aligned_cols=86 Identities=9% Similarity=0.157 Sum_probs=47.7
Q ss_pred eccCCcCCCCCCCCCCCCccccCCCcccccccccCCCCCCCCCCceEEE----EecCCCCchhHHHHHHHHHHHHHH-cC
Q 027626 83 CSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRDGVGDKDGVII----VDHGSRRRESNLMLKQFVAMFREK-TG 157 (221)
Q Consensus 83 ~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~aLLL----VaHGSrdpean~~~~~LA~~L~~~-~~ 157 (221)
|| .=.| ||- .||.+- -.+|.+.. ..+.+++|| +|+|+...-+......+.+.-..+ .+
T Consensus 383 ~T--~Grp-HPM-IDp~~R--------~~~~~~~a-----~dp~~~VillD~vlGyGah~dpa~~l~~ai~~~~~~~~~~ 445 (555)
T PRK06091 383 YT--VGRP-HPM-IDPTLR--------NQLIADLG-----AKPQVRVLLLDVVIGFGATADPAGSLVSAIQKACAARADG 445 (555)
T ss_pred cc--CCCC-CCC-cChHHH--------HHHHHHhc-----cCCcceEEEEEeeeccCCCCChHHHHHHHHHHHHhhhhcC
Confidence 55 3467 996 444332 12445443 224567754 689996544444444433332222 23
Q ss_pred CceEEEEEe---ecCCCCHHHHHHHHHHcCC
Q 027626 158 YLIVEPAHM---ELAEPSIKDAFGSCVQQGA 185 (221)
Q Consensus 158 ~~~V~vAFL---E~a~PsLeeaL~~L~~~G~ 185 (221)
...+.++++ +.-.+.+++..+.|.+.|+
T Consensus 446 r~l~~v~~v~GT~~DpQ~~~~q~~~L~~aGv 476 (555)
T PRK06091 446 QPLYAIATVTGTERDPQCRSQQIATLEDAGI 476 (555)
T ss_pred CceEEEEEEeCCCCCCcCHHHHHHHHHhCCe
Confidence 334556666 4445679999999998884
No 78
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=21.78 E-value=1.6e+02 Score=21.37 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=22.6
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHH
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREK 155 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L~~~ 155 (221)
.+++|++.||-- +-...+..+++.|.+.
T Consensus 15 ~k~~v~i~HG~~--eh~~ry~~~a~~L~~~ 42 (79)
T PF12146_consen 15 PKAVVVIVHGFG--EHSGRYAHLAEFLAEQ 42 (79)
T ss_pred CCEEEEEeCCcH--HHHHHHHHHHHHHHhC
Confidence 579999999994 4455789999999764
No 79
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.46 E-value=4.8e+02 Score=21.66 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=37.0
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccc
Q 027626 134 HGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (221)
Q Consensus 134 HGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLF 194 (221)
....++-+...+..+.+.+++. ++. +.+...+.....-.+.++.+..++++-|++.|..
T Consensus 7 ~~~~~~~~~~~~~gi~~~~~~~-g~~-~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 65 (273)
T cd06292 7 PELSNPIFPAFAEAIEAALAQY-GYT-VLLCNTYRGGVSEADYVEDLLARGVRGVVFISSL 65 (273)
T ss_pred CCCcCchHHHHHHHHHHHHHHC-CCE-EEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3344566666777777777663 543 4444433222335577888888888888888754
No 80
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.20 E-value=4.7e+02 Score=21.45 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=34.2
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcc
Q 027626 136 SRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (221)
Q Consensus 136 Srdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPL 193 (221)
.+++-+...+..+.+.+++. ++. +.+...+.......+.++.+...+++-|++.|.
T Consensus 9 ~~~~~~~~~~~~i~~~a~~~-g~~-~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 9 ITNPFSSLVLKGIEDVCRAH-GYQ-VLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred CccccHHHHHHHHHHHHHHc-CCE-EEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 34566666777777776654 443 444443322233456677788888888888764
No 81
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=20.48 E-value=4.6e+02 Score=21.10 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=12.6
Q ss_pred EEEecCCCCchhHHHHHHHHH
Q 027626 130 IIVDHGSRRRESNLMLKQFVA 150 (221)
Q Consensus 130 LLVaHGSrdpean~~~~~LA~ 150 (221)
|+|+|| ++..+...+..+-+
T Consensus 2 VFIvhg-~~~~~~~~v~~~L~ 21 (125)
T PF10137_consen 2 VFIVHG-RDLAAAEAVERFLE 21 (125)
T ss_pred EEEEeC-CCHHHHHHHHHHHH
Confidence 689999 66666554444433
No 82
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=20.40 E-value=3.9e+02 Score=25.50 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=44.6
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCc--ccchH
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPG--RHWCQ 203 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G--~Hv~~ 203 (221)
+.-+++|+-||...... ..++.++++ +. .|.+--+-.-.|-..+.++++.+ ++++|+|+=-=...| .=...
T Consensus 261 DAe~viV~~GS~~~~~k----eav~~LR~~-G~-kVGllri~~~rPFP~~~i~~~l~-~~k~ViVvE~n~s~g~~g~l~~ 333 (394)
T PRK08367 261 DAEIIFVTMGSLAGTLK----EFVDKLREE-GY-KVGAAKLTVYRPFPVEEIRALAK-KAKVLAFLEKNISFGLGGAVFA 333 (394)
T ss_pred CCCEEEEEeCccHHHHH----HHHHHHHhc-CC-cceeEEEeEecCCCHHHHHHHHc-cCCEEEEEeCCCCCCCCCcHHH
Confidence 45699999999755444 444455543 22 12222222235777777766654 688888876444333 34556
Q ss_pred HHHhcc
Q 027626 204 VVLSNF 209 (221)
Q Consensus 204 DIP~~l 209 (221)
||-..+
T Consensus 334 dV~aal 339 (394)
T PRK08367 334 DASAAL 339 (394)
T ss_pred HHHHHH
Confidence 777766
No 83
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=20.36 E-value=3.3e+02 Score=25.58 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=43.6
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCC--HHHHHHHHHHcCCCeEEE
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPS--IKDAFGSCVQQGANRVIV 190 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~Ps--LeeaL~~L~~~G~~rIvV 190 (221)
-.-|.+|-|+..-=..+.+.++.+.+++..+......-.+|. .|. -.|-++.|.+.|+++|-+
T Consensus 74 i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~-~p~~~~~e~L~~l~~~Gvnrisi 138 (394)
T PRK08898 74 VHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEA-NPGTFEAEKFAQFRASGVNRLSI 138 (394)
T ss_pred eeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEE-CCCCCCHHHHHHHHHcCCCeEEE
Confidence 457899999976555778889999998887653212223443 332 346788999999998775
No 84
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=20.28 E-value=7.1e+02 Score=23.20 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCC-chhHHHHHHHHHHHHHHcCCceEEEEEeecCC----CCHHHHHHHHHHcCCCeEEEEcccccCcc
Q 027626 125 DKDGVIIVDHGSRR-RESNLMLKQFVAMFREKTGYLIVEPAHMELAE----PSIKDAFGSCVQQGANRVIVSPFFLFPGR 199 (221)
Q Consensus 125 ~~~aLLLVaHGSrd-pean~~~~~LA~~L~~~~~~~~V~vAFLE~a~----PsLeeaL~~L~~~G~~rIvVVPLFL~~G~ 199 (221)
+...+.++.+|..+ ..+|.....=...+++.++. .+...|.|..+ ...+++++++.++|.+=|+. .|.
T Consensus 34 ~~~~~~~~~~g~~~D~s~n~~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~lI~~------~gf 106 (345)
T COG1744 34 KKKKVAVIDVGGIDDKSFNQSAYEGLLKAKKELGL-KVETYYWEYVQSDSEADYERALRALAEDGYDLIFG------TGF 106 (345)
T ss_pred cceEEEEEecCCCCccchhHHHHHHHHHHHHHhCC-ceEeeeeeecCCcchhHHHHHHHHHHhcCCCEEEE------ecc
Confidence 34567777888875 55887776666677777664 36666665322 45888899999999843333 333
Q ss_pred cchHHHHhccc--cCcEEEe
Q 027626 200 HWCQVVLSNFL--DNISLNF 217 (221)
Q Consensus 200 Hv~~DIP~~l~--p~I~l~~ 217 (221)
-..+.+..... |+++|.+
T Consensus 107 ~~~d~~~~va~~~Pd~~F~i 126 (345)
T COG1744 107 AFSDALEKVAAEYPDVKFVI 126 (345)
T ss_pred chhhHHHHHHHHCCCCEEEE
Confidence 33333333332 6666654
No 85
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=20.02 E-value=4.5e+02 Score=21.01 Aligned_cols=62 Identities=2% Similarity=-0.111 Sum_probs=31.8
Q ss_pred EEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcc
Q 027626 129 VIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (221)
Q Consensus 129 LLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPL 193 (221)
++++|-|+.-..=...=-.++++|+++.....+. +++.+.. .++.+..+...++++|+++=-
T Consensus 1 ~lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~--v~d~gt~-~~~~~~~~~~~~~d~viivDA 62 (146)
T TIGR00142 1 LVLLCVGNELMGDDGAGPYLAEKCAAAPKEENWV--VINAGTV-PENFTVAIRELRPTHILIVDA 62 (146)
T ss_pred CEEEEeCccccccCcHHHHHHHHHHhccCCCCEE--EEECCCC-hHHHHHHHHhcCCCEEEEEEC
Confidence 4677888854211111124556666543322333 3443332 455555655557888877653
Done!