Query 027626
Match_columns 221
No_of_seqs 173 out of 1074
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lyh_A Cobalamin (vitamin B12) 99.9 2.1E-22 7.2E-27 157.4 10.2 95 124-220 3-102 (126)
2 2xws_A Sirohydrochlorin cobalt 99.8 4.7E-21 1.6E-25 149.8 10.5 93 125-220 2-107 (133)
3 1tjn_A Sirohydrochlorin cobalt 99.8 1E-20 3.5E-25 154.2 10.8 93 125-220 23-128 (156)
4 2xwp_A Sirohydrochlorin cobalt 99.7 6.4E-19 2.2E-23 153.8 5.9 133 46-208 83-215 (264)
5 2xwp_A Sirohydrochlorin cobalt 99.7 1.3E-16 4.5E-21 139.1 11.8 94 126-220 2-112 (264)
6 2xvy_A Chelatase, putative; me 99.7 3E-16 1E-20 136.0 12.2 97 123-220 6-120 (269)
7 2xvy_A Chelatase, putative; me 99.5 1.2E-15 3.9E-20 132.3 2.8 122 79-219 114-245 (269)
8 2jh3_A Ribosomal protein S2-re 99.5 8.1E-15 2.8E-19 139.0 6.0 92 125-220 2-115 (474)
9 2jh3_A Ribosomal protein S2-re 99.4 5E-14 1.7E-18 133.7 -0.1 154 45-220 72-246 (474)
10 2h1v_A Ferrochelatase; rossman 98.7 5.4E-08 1.8E-12 87.0 9.0 95 125-219 174-288 (310)
11 2h1v_A Ferrochelatase; rossman 98.6 2.8E-08 9.7E-13 88.8 5.6 87 133-220 51-146 (310)
12 1lbq_A Ferrochelatase; rossman 98.4 4.8E-07 1.6E-11 83.1 8.6 87 133-220 68-167 (362)
13 1lbq_A Ferrochelatase; rossman 97.7 9.8E-06 3.3E-10 74.3 2.6 127 52-203 142-284 (362)
14 3hcn_A Ferrochelatase, mitocho 96.5 0.0099 3.4E-07 54.4 9.4 95 125-219 190-305 (359)
15 3hcn_A Ferrochelatase, mitocho 95.9 0.038 1.3E-06 50.6 9.9 72 147-219 78-161 (359)
16 3g1w_A Sugar ABC transporter; 51.5 75 0.0026 25.7 8.5 67 126-194 4-71 (305)
17 1xg8_A Hypothetical protein SA 51.1 11 0.00039 29.1 3.1 60 139-198 26-87 (111)
18 3mtq_A Putative phosphoenolpyr 43.1 1E+02 0.0035 24.5 7.9 54 124-183 19-73 (159)
19 2fsv_C NAD(P) transhydrogenase 38.1 39 0.0013 28.7 4.7 50 169-220 32-85 (203)
20 3gdw_A Sigma-54 interaction do 37.1 75 0.0026 24.6 6.0 26 125-153 3-28 (139)
21 1tjn_A Sirohydrochlorin cobalt 36.6 1.8 6.2E-05 34.2 -3.6 40 45-94 89-134 (156)
22 1djl_A Transhydrogenase DIII; 36.1 43 0.0015 28.5 4.7 49 170-220 32-84 (207)
23 3gx1_A LIN1832 protein; APC633 35.1 1.5E+02 0.005 22.6 7.4 26 125-153 3-28 (130)
24 3bed_A PTS system, IIA compone 34.8 55 0.0019 25.1 4.8 22 127-152 6-27 (142)
25 2bru_C NAD(P) transhydrogenase 29.8 41 0.0014 28.2 3.4 48 171-220 18-69 (186)
26 3ipr_A PTS system, IIA compone 29.8 87 0.003 24.3 5.3 24 126-153 1-24 (150)
27 3lfh_A Manxa, phosphotransfera 26.0 1E+02 0.0035 23.9 5.0 25 125-153 2-26 (144)
28 2fuk_A XC6422 protein; A/B hyd 25.3 1.5E+02 0.0051 22.0 5.8 33 125-158 35-70 (220)
29 3l49_A ABC sugar (ribose) tran 25.2 2.5E+02 0.0087 22.2 7.6 64 128-193 7-70 (291)
30 3trd_A Alpha/beta hydrolase; c 24.4 2.1E+02 0.0074 21.0 7.2 67 126-193 30-112 (208)
31 3uug_A Multiple sugar-binding 24.0 2.9E+02 0.0099 22.4 9.4 65 128-194 5-69 (330)
32 3ju3_A Probable 2-oxoacid ferr 23.3 90 0.0031 23.2 4.1 59 127-192 14-72 (118)
33 3cf4_G Acetyl-COA decarboxylas 23.0 81 0.0028 24.6 4.0 27 126-152 35-61 (170)
34 3l6u_A ABC-type sugar transpor 23.0 2.8E+02 0.0097 21.9 9.3 64 128-193 10-73 (293)
35 1byr_A Protein (endonuclease); 22.9 2E+02 0.0067 21.1 6.0 73 144-218 15-87 (155)
36 1pdo_A Mannose permease; phosp 22.5 84 0.0029 23.7 3.9 23 126-152 1-23 (135)
37 2peb_A Putative dioxygenase; s 21.8 17 0.00059 28.5 -0.3 18 77-95 38-55 (122)
38 3pfb_A Cinnamoyl esterase; alp 21.3 2.4E+02 0.0083 21.4 6.4 32 126-158 45-76 (270)
39 2qs9_A Retinoblastoma-binding 21.2 1.3E+02 0.0044 22.3 4.6 66 128-193 5-74 (194)
40 3tb6_A Arabinose metabolism tr 21.1 3.1E+02 0.011 21.6 9.3 65 128-194 17-81 (298)
41 4ggj_A Mitochondrial cardiolip 20.3 90 0.0031 25.0 3.8 45 144-190 47-92 (196)
42 3o74_A Fructose transport syst 20.2 3.1E+02 0.011 21.3 7.3 64 129-194 5-68 (272)
43 3h75_A Periplasmic sugar-bindi 20.0 3.7E+02 0.013 22.2 7.8 63 128-192 5-70 (350)
No 1
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=99.87 E-value=2.1e-22 Score=157.44 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=87.2
Q ss_pred CCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchH
Q 027626 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (221)
Q Consensus 124 ~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~ 203 (221)
..++++|||+|||++++++..+..++++++++. ..|++||+|++.|++++++++|.++|+++|+|+||||++|.|+++
T Consensus 3 ~~~~alllv~HGS~~~~~~~~~~~l~~~l~~~~--~~V~~a~le~~~P~l~~~l~~l~~~G~~~vvvvPlfl~~G~H~~~ 80 (126)
T 3lyh_A 3 TQPHQIILLAHGSSDARWCETFEKLAEPTVESI--ENAAIAYMELAEPSLDTIVNRAKGQGVEQFTVVPLFLAAGRHLRK 80 (126)
T ss_dssp --CEEEEEEECCCSCHHHHHHHHHHHHHHHHHS--TTCEEEESSSSSSBHHHHHHHHHHTTCCEEEEEECCSCCCHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhhc--CCEEEEEEeCCCCCHHHHHHHHHHcCCCEEEEEecccCCCchhhh
Confidence 346899999999999999999999999999987 479999999999999999999999999999999999999999999
Q ss_pred HHHhcccc-----CcEEEeecC
Q 027626 204 VVLSNFLD-----NISLNFYRH 220 (221)
Q Consensus 204 DIP~~l~p-----~I~l~~a~p 220 (221)
|||+.++. ++++++++|
T Consensus 81 Dip~~~~~~~~~~~~~i~~~~~ 102 (126)
T 3lyh_A 81 DVPAMIERLEAEHGVTIRLAEP 102 (126)
T ss_dssp HHHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHHHhCceEEEcCC
Confidence 99998872 788888875
No 2
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=99.85 E-value=4.7e-21 Score=149.78 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=85.7
Q ss_pred CCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeec-CCCCHHHHHHHHHHcCCCeEEEEcccccCcccchH
Q 027626 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~-a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~ 203 (221)
++++||||+|||++++++..+..++++++++.++..|++||+|+ +.|++++++++| |+++|+|+||||++|.|+++
T Consensus 2 m~~alllv~HGS~~~~~~~~~~~la~~l~~~~~~~~V~~a~le~~~~Psl~~~l~~l---g~~~v~v~Plfl~~G~h~~~ 78 (133)
T 2xws_A 2 MRRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGLHVTE 78 (133)
T ss_dssp CCEEEEEEECSCCCHHHHHHHHHHHHHHHHHTSSSEEEEEESSTTCSSCHHHHHHHC---CCSEEEEEECCSSCCHHHHT
T ss_pred CcceEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCcEEeeeeecCCCCCHHHHHHHc---CCCEEEEEeeeeCCCcchHh
Confidence 35899999999999999999999999999998888999999998 999999999999 99999999999999999999
Q ss_pred HHHhccc------------cCcEEEeecC
Q 027626 204 VVLSNFL------------DNISLNFYRH 220 (221)
Q Consensus 204 DIP~~l~------------p~I~l~~a~p 220 (221)
|||+.++ +++++++++|
T Consensus 79 di~~~~~~~~~~~s~~~~~~~~~i~~~~p 107 (133)
T 2xws_A 79 DLPDLLGFPRGRGIKEGEFEGKKVVICEP 107 (133)
T ss_dssp HHHHHHTCCCSSSCEEEEETTEEEEECCC
T ss_pred HHHHHHHHhhccccccccCCCceEEEcCC
Confidence 9999864 3578888765
No 3
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=99.84 E-value=1e-20 Score=154.24 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=86.2
Q ss_pred CCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeec-CCCCHHHHHHHHHHcCCCeEEEEcccccCcccchH
Q 027626 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMEL-AEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQ 203 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~-a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~ 203 (221)
++++||||+|||++++++..+.+++++++++.++..|++||+|+ +.|++++++++| |+++|+|+||||++|.|+++
T Consensus 23 M~~avlLv~HGS~~p~~~~~~~~la~~l~~~~~~~~V~~afle~~~~Psl~~~l~~l---G~~~VvVvPlfL~~G~h~~~ 99 (156)
T 1tjn_A 23 MRRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAARKRRPMPDEAIREM---NCDIIYVVPLFISYGLHVTE 99 (156)
T ss_dssp CCEEEEEEECCTTSTTHHHHHHHHHHHHHHHTSSSEEEEEECSSSCSSCHHHHHHHC---CCSEEEEEECCSSCSHHHHT
T ss_pred CCcCEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEEEecCCCCCCHHHHHHHc---CCCEEEEEechhcCCchhHh
Confidence 45899999999999999999999999999998888999999999 999999999999 99999999999999999999
Q ss_pred HHHhccc------------cCcEEEeecC
Q 027626 204 VVLSNFL------------DNISLNFYRH 220 (221)
Q Consensus 204 DIP~~l~------------p~I~l~~a~p 220 (221)
|||+.++ +++++++++|
T Consensus 100 DIp~~l~~~~~~~sw~~~~~~~~i~~~~p 128 (156)
T 1tjn_A 100 DLPDLLGFPRGRGIKEGEFEGKKVVICEP 128 (156)
T ss_dssp HHHHHHTCCCSSSCEEEEETTEEEEECCC
T ss_pred HHHHHHHHHHhcccccccCCCceEEEeCC
Confidence 9999863 4678888765
No 4
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=99.75 E-value=6.4e-19 Score=153.76 Aligned_cols=133 Identities=13% Similarity=0.147 Sum_probs=103.8
Q ss_pred HHhhcccCCCCCccchHHhhccChhhhcCCCceeeeeeccCCcCCCCCCCCCCCCccccCCCcccccccccCCCCCCCCC
Q 027626 46 KITSSLHKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRDGVGD 125 (221)
Q Consensus 46 ~~~~~~h~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 125 (221)
.|+.+.|.. |+|+.+...+...+ .++ +. .++|+ ||. ... .....+.+. ... ..+
T Consensus 83 ~l~~G~~~~-di~~~v~~~~~~~~-------~i~---~~-~pl~~-~~~-----~~~-----~l~~~l~~~-~~~--~~~ 136 (264)
T 2xwp_A 83 HIINGDEYE-KIVREVQLLRPLFT-------RLT---LG-VPLLS-SHN-----DYV-----QLMQALRQQ-MPS--LRQ 136 (264)
T ss_dssp CSSSSHHHH-HHHHHHHHHGGGCS-------EEE---EE-CCSSC-SHH-----HHH-----HHHHHHHTT-SCC--CCT
T ss_pred cccCcHHHH-HHHHHHHHHHhhCC-------ceE---Ee-cCCCC-CHH-----HHH-----HHHHHHHHh-ccc--cCC
Confidence 347888887 99999888765544 443 44 46888 764 221 111222221 111 235
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHH
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVV 205 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DI 205 (221)
+++|||+||||+++ +|..+..++..++++. . .|++||+|. .|++++++++|.++|+++|+|+||||++|.|+++||
T Consensus 137 ~~~lvl~gHGs~~~-~~~~~~~~a~~l~~~~-~-~v~~g~~e~-~P~~~~~l~~l~~~G~~~v~v~P~~l~aG~h~~~Di 212 (264)
T 2xwp_A 137 TEKVVFMGHGASHH-AFAAYACLDHMMTAQR-F-PARVGAVES-YPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDM 212 (264)
T ss_dssp TEEEEEEECCCSSG-GGHHHHHHHHHHHHTT-C-SEEEEESSS-SSCHHHHHHHHHHHTCCEEEEEECSSCCCHHHHHHH
T ss_pred CCeEEEEECCCCch-hhHHHHHHHHHHHhhC-C-CEEEEEeCC-CCCHHHHHHHHHHCCCCEEEEEeeecccCcchhhhc
Confidence 78999999999998 8999999999999874 4 799999995 999999999999999999999999999999999999
Q ss_pred Hhc
Q 027626 206 LSN 208 (221)
Q Consensus 206 P~~ 208 (221)
|..
T Consensus 213 ~~~ 215 (264)
T 2xwp_A 213 ASD 215 (264)
T ss_dssp HSS
T ss_pred ccc
Confidence 986
No 5
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=99.69 E-value=1.3e-16 Score=139.10 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=84.8
Q ss_pred CceEEEEecCCCCchhHH-HHHHHHHHHHHHcCCceEEEEEee------------cCCCCHHHHHHHHHHcCCCeEEEEc
Q 027626 126 KDGVIIVDHGSRRRESNL-MLKQFVAMFREKTGYLIVEPAHME------------LAEPSIKDAFGSCVQQGANRVIVSP 192 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~-~~~~LA~~L~~~~~~~~V~vAFLE------------~a~PsLeeaL~~L~~~G~~rIvVVP 192 (221)
+++||||+||||+++++. .++.+++++++++|...|+.||+| ...|++++++++|.++|+++|+|+|
T Consensus 2 ~~aillv~hGSr~~~~~~~~~~~~~~~v~~~~p~~~V~~af~s~~i~~~l~~~~g~~~psi~~aL~~l~~~G~~~vvV~P 81 (264)
T 2xwp_A 2 KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQS 81 (264)
T ss_dssp CEEEEEEECCCSCHHHHHHHHHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHCCCCCCHHHHHHHHHHHTCCEEEEEE
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHhcCCCCCCHHHHHHHHHhCCCCEEEEEe
Confidence 579999999999999999 999999999999999999999994 4679999999999999999999999
Q ss_pred ccccCcccchHHHHhcccc----CcEEEeecC
Q 027626 193 FFLFPGRHWCQVVLSNFLD----NISLNFYRH 220 (221)
Q Consensus 193 LFL~~G~Hv~~DIP~~l~p----~I~l~~a~p 220 (221)
+|+++|.|+. |||+.+.. --++++++|
T Consensus 82 l~l~~G~~~~-di~~~v~~~~~~~~~i~~~~p 112 (264)
T 2xwp_A 82 LHIINGDEYE-KIVREVQLLRPLFTRLTLGVP 112 (264)
T ss_dssp CCSSSSHHHH-HHHHHHHHHGGGCSEEEEECC
T ss_pred CcccCcHHHH-HHHHHHHHHHhhCCceEEecC
Confidence 9999999996 99997761 137777766
No 6
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=99.67 E-value=3e-16 Score=135.96 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=87.0
Q ss_pred CCCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEee-----------cCCCCHHHHHHHHHHcCCCeEEEE
Q 027626 123 VGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHME-----------LAEPSIKDAFGSCVQQGANRVIVS 191 (221)
Q Consensus 123 ~~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE-----------~a~PsLeeaL~~L~~~G~~rIvVV 191 (221)
..++++||||+|||+++++++.++.++++++++++...|+.||++ .+.|++++++++|.++|+++|+|+
T Consensus 6 ~~~~~aillv~hGS~~~~~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~ 85 (269)
T 2xvy_A 6 KAQKTGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQ 85 (269)
T ss_dssp --CCEEEEEEECCCCCTTTTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCceEEEEeCCCCcHHHHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEE
Confidence 345789999999999999999999999999999998899999999 889999999999999999999999
Q ss_pred cccccCcccchHHHHhc---cc----cCcEEEeecC
Q 027626 192 PFFLFPGRHWCQVVLSN---FL----DNISLNFYRH 220 (221)
Q Consensus 192 PLFL~~G~Hv~~DIP~~---l~----p~I~l~~a~p 220 (221)
|+|+++|. ..+|||+. +. ...++++.+|
T Consensus 86 Pl~l~~G~-~~~di~~~~~~l~~~~~~~~~i~~~~p 120 (269)
T 2xvy_A 86 SLHTIPGE-EFHGLLETAHAFQGLPKGLTRVSVGLP 120 (269)
T ss_dssp ECCSSSSH-HHHHHHHHHHHHTTCTTSCSEEEEECC
T ss_pred eceeeccH-hHHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 99999997 67799998 54 1377887765
No 7
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=99.54 E-value=1.2e-15 Score=132.30 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=93.6
Q ss_pred eeeeeccCCcCCCCCCCCCCCCccccCCCcccccccccCCCCCCCCCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCC
Q 027626 79 TVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRDGVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGY 158 (221)
Q Consensus 79 ~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~ 158 (221)
.++ +. .++|. ||. +. .+...++.++. .. ....+++||+++|||++ .++..+..+++.+++. +
T Consensus 114 ~i~-~~-~pl~~-~p~-----~i-----~~la~~i~~~~-~~-~~~~~~~lll~~HGs~~-~~~~~~~~~a~~l~~~-~- 175 (269)
T 2xvy_A 114 RVS-VG-LPLIG-TTA-----DA-----EAVAEALVASL-PA-DRKPGEPVVFMGHGTPH-PADICYPGLQYYLWRL-D- 175 (269)
T ss_dssp EEE-EE-CCSSC-SHH-----HH-----HHHHHHHHHHS-CT-TCCTTCCEEEEECCCSS-GGGGHHHHHHHHHHTT-C-
T ss_pred eEE-Ee-CCCCC-CHH-----HH-----HHHHHHHHHhc-hh-hccCCceEEEEECCCCh-hhccHHHHHHHHHHhc-C-
Confidence 444 55 46888 776 65 34444555443 11 12356799999999998 7888899999999775 3
Q ss_pred ceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHHHhccc---------cCcEEE-eec
Q 027626 159 LIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVVLSNFL---------DNISLN-FYR 219 (221)
Q Consensus 159 ~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DIP~~l~---------p~I~l~-~a~ 219 (221)
..+..|++|. .|++++++++|.++|+++|+|+||||++|.|+++||+..+. .|+++. +.+
T Consensus 176 ~~~~~g~~e~-~P~~~~~l~~l~~~G~~~v~v~P~~l~~G~h~~~di~~~~~~~~~~~~~~~g~~~~~~~~ 245 (269)
T 2xvy_A 176 PDLLVGTVEG-SPSFDNVMAELDVRKAKRVWLMPLMAVAGDHARNDMAGDEDDSWTSQLARRGIEAKPVLH 245 (269)
T ss_dssp TTEEEEESSS-SSCHHHHHHHHHHHTCSEEEEEEESSSCCHHHHTTTTCSSTTSHHHHHHHTTCEEEECCC
T ss_pred CCEEEEEcCC-CCCHHHHHHHHHHCCCCEEEEECCccccccchhhhcCCCchhHHHHHHHHcCcEEEEecC
Confidence 5678999984 89999999999999999999999999999999999987652 377765 443
No 8
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=99.51 E-value=8.1e-15 Score=139.03 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=82.7
Q ss_pred CCceEEEEecCC-CCchhHHHHHHHHHHHHHHcC-----CceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCc
Q 027626 125 DKDGVIIVDHGS-RRRESNLMLKQFVAMFREKTG-----YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPG 198 (221)
Q Consensus 125 ~~~aLLLVaHGS-rdpean~~~~~LA~~L~~~~~-----~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G 198 (221)
++++||||+||| ++++++..+..++++++++.+ ...|+.||+| +.|++++++++| |+++|+|+|+|++.|
T Consensus 2 mk~alLLVgHGSp~~~~a~~~i~~La~~l~~~~~~~~L~~~~V~~Afle-~~PsI~eaL~~L---G~~rVvVvPLfl~~G 77 (474)
T 2jh3_A 2 ALRSLVLIGHGSHHHGESARATQQVAEALRGRGLAGHLPYDEVLEGYWQ-QEPGLRQVLRTV---AYSDVTVVPVFLSEG 77 (474)
T ss_dssp CBCEEEEEECCCSSCTHHHHHHHHHHHHHHHHHHTTCCSCSEEEEEESS-SSSBTTTGGGGC---CBSEEEEEECCSCCS
T ss_pred CcceEEEEeCCCCCChhHHHHHHHHHHHHHHhCCccccCCCeEEEEEcC-CCCCHHHHHHHc---CcCeEEEEEEehhcc
Confidence 468999999999 589999999999999998876 7789999999 899999999998 999999999999999
Q ss_pred ccchHHHHhccc----------------cCcEEEeecC
Q 027626 199 RHWCQVVLSNFL----------------DNISLNFYRH 220 (221)
Q Consensus 199 ~Hv~~DIP~~l~----------------p~I~l~~a~p 220 (221)
.|+++|||+.++ +++++.+.+|
T Consensus 78 ~H~~~DIp~~l~~~~~~~dsw~~~~~~~p~~~I~~~~p 115 (474)
T 2jh3_A 78 YVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVRYTRP 115 (474)
T ss_dssp HHHHTHHHHHHTCCCCSCCCTTCEEEEETTEEEEECCC
T ss_pred HhHHHHHHHHHHHhhhccccchhhhhhcCCceEEEeCc
Confidence 999999999765 3567887765
No 9
>2jh3_A Ribosomal protein S2-related protein; CBIX, SAD phasing, structural genomics, chelatase super-family fold, 4Fe-4S iron-sulphur cluster; 1.9A {Deinococcus radiodurans}
Probab=99.37 E-value=5e-14 Score=133.66 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=111.9
Q ss_pred HHHhhcccCCCCCccchHHhhcc--C-hhhhcCCCceeeeeeccCCcCCCCCCCCCCCCccccCCCcccccccccCCCCC
Q 027626 45 CKITSSLHKPSETPNSWKADQNM--S-VESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIKSSSRD 121 (221)
Q Consensus 45 ~~~~~~~h~~~~~p~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 121 (221)
.++..++|.+.|||..+..++.. | ...+...+.+.++ +. .++|. ||. +. .....++.++- ...
T Consensus 72 Lfl~~G~H~~~DIp~~l~~~~~~~dsw~~~~~~~p~~~I~-~~-~pLG~-~P~-----li-----e~la~rI~eal-~~g 137 (474)
T 2jh3_A 72 VFLSEGYVTETVLPRELGLGHQGPVPTGGVVRVLGGRRVR-YT-RPLGA-HPG-----MA-----DAIAAQARDTL-PEG 137 (474)
T ss_dssp CCSCCSHHHHTHHHHHHTCCCCSCCCTTCEEEEETTEEEE-EC-CCGGG-STT-----HH-----HHHHHHHHHHS-CTT
T ss_pred EehhccHhHHHHHHHHHHHhhhccccchhhhhhcCCceEE-Ee-CccCC-CHH-----HH-----HHHHHHHHHHH-hhc
Confidence 34688999999999987765420 0 0000011235566 66 56999 887 66 33334444321 011
Q ss_pred CCCCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCC-----------CHHHHHHHHHHcCCCeEEE
Q 027626 122 GVGDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-----------SIKDAFGSCVQQGANRVIV 190 (221)
Q Consensus 122 ~~~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~P-----------sLeeaL~~L~~~G~~rIvV 190 (221)
..+.+.+|||+| ++.++..+.++++.++++.++..|.+||+|. .| ++++++++| |+++|+|
T Consensus 138 ~~~~~~avvlvg----dp~a~~~~~~la~~L~e~lg~~~v~vaf~s~-~Pwl~P~~~wleP~l~d~l~~L---G~krVvV 209 (474)
T 2jh3_A 138 TDPADVTLLLLA----ARPGNAALETHAQALRERGQFAGVEVVLESR-EALTPESHAASAVPLSEWPSRV---EAGQAVL 209 (474)
T ss_dssp CCGGGCEEEEEE----SSTTCHHHHHHHHHHHHHCCSSEEEEEECCC-C---------CCEEGGGGGGGC---CSSCEEE
T ss_pred cCcccceEEEec----CchHHHHHHHHHHHHHHhcCCCcEEEEEEeC-CCCCCcccccccCCHHHHHHHc---CCCeEEE
Confidence 123456899999 7888999999999999998887899999997 77 999999988 8999999
Q ss_pred EcccccCcccchHHHHhccc------c-CcEEEeecC
Q 027626 191 SPFFLFPGRHWCQVVLSNFL------D-NISLNFYRH 220 (221)
Q Consensus 191 VPLFL~~G~Hv~~DIP~~l~------p-~I~l~~a~p 220 (221)
+|||+++|.|+.+||+..++ + |+++.++++
T Consensus 210 ~P~Fl~dG~h~~~DI~~~~~~~~~~~p~G~~v~~~~~ 246 (474)
T 2jh3_A 210 VPFLTHLGKHAAERLQQALAQAAERFPQAPPLHVGGP 246 (474)
T ss_dssp EECSSCCCHHHHHHHHHHHHHHHHHCTTCCCEEECCC
T ss_pred EEeeccCCcchHHHHHHHHHHHHHhccCCcEEEecCC
Confidence 99999999999999998754 3 788877764
No 10
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=98.68 E-value=5.4e-08 Score=87.03 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=77.0
Q ss_pred CCceEEEEecCCCCc------hhHHHHHHHHHHHHHHcCCceEEEEEeec-------CCCCHHHHHHHHHHc-CCCeEEE
Q 027626 125 DKDGVIIVDHGSRRR------ESNLMLKQFVAMFREKTGYLIVEPAHMEL-------AEPSIKDAFGSCVQQ-GANRVIV 190 (221)
Q Consensus 125 ~~~aLLLVaHGSrdp------ean~~~~~LA~~L~~~~~~~~V~vAFLE~-------a~PsLeeaL~~L~~~-G~~rIvV 190 (221)
.+..||+.+||+... ..+....+.++.+.++.+...+.+||.+. .+|++++++++|.++ |+++|+|
T Consensus 174 ~~~~llfs~HG~P~~~~~~gDpY~~~~~~t~~~l~e~l~~~~~~~~fqSrg~g~~~Wl~P~~~~~l~~l~~~~G~k~v~V 253 (310)
T 2h1v_A 174 ENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVY 253 (310)
T ss_dssp TSEEEEEEEECCBGGGGGGTCCHHHHHHHHHHHHHHHHTCSCEEEEEESCCCCSSCBSSCBHHHHHHHHHHHHCCSEEEE
T ss_pred CCceEEEecCCCchhhccCCCChHHHHHHHHHHHHHHcCCCCEEEEEEcCCCCCCCcCCCCHHHHHHHHHHHcCCceEEE
Confidence 467999999999743 26788888999999988877899999984 589999999999999 9999999
Q ss_pred Ecc-cccCcccchHHHHhccc-----cCcEEEeec
Q 027626 191 SPF-FLFPGRHWCQVVLSNFL-----DNISLNFYR 219 (221)
Q Consensus 191 VPL-FL~~G~Hv~~DIP~~l~-----p~I~l~~a~ 219 (221)
+|+ |++...++..||..+.. .|+++.+++
T Consensus 254 ~P~~F~sD~lEtl~ei~~e~~e~~~~~G~~~~~~p 288 (310)
T 2h1v_A 254 VPVGFVADHLEVLYDNDYECKVVTDDIGASYYRPE 288 (310)
T ss_dssp ECTTCCSSCHHHHTTTTTHHHHHHHHHTCEEECCC
T ss_pred ECCcccccceeeHHHHHHHHHHHHHHcCCeEEECC
Confidence 997 66666666778765543 467776654
No 11
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=98.62 E-value=2.8e-08 Score=88.84 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=68.1
Q ss_pred ecCCCCchhHH-HHHHHHHHHHHHcC--CceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccc----cCcccchHHH
Q 027626 133 DHGSRRRESNL-MLKQFVAMFREKTG--YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFL----FPGRHWCQVV 205 (221)
Q Consensus 133 aHGSrdpean~-~~~~LA~~L~~~~~--~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL----~~G~Hv~~DI 205 (221)
+|||+....+. ..+.+.+.|.++.+ ...|..|| +++.|+++|++++|.++|+++|+|+|+|. +.-.|+.+||
T Consensus 51 g~gSPl~~~t~~q~~~L~~~L~~~~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i 129 (310)
T 2h1v_A 51 GGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGL-AHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRA 129 (310)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEE-SSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCCCCCceEeehh-cCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHH
Confidence 78887655543 35677777776653 45789995 89999999999999999999999999994 2224788999
Q ss_pred Hhccc--cCcEEEeecC
Q 027626 206 LSNFL--DNISLNFYRH 220 (221)
Q Consensus 206 P~~l~--p~I~l~~a~p 220 (221)
++.+. +++++++.++
T Consensus 130 ~~~l~~~~~~~i~~i~~ 146 (310)
T 2h1v_A 130 KEEAEKLGGLTITSVES 146 (310)
T ss_dssp HHHHHHHCSCEEEECCC
T ss_pred HHHHHhCCCCeEEEeCC
Confidence 99876 4788887664
No 12
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=98.44 E-value=4.8e-07 Score=83.08 Aligned_cols=87 Identities=11% Similarity=0.135 Sum_probs=67.0
Q ss_pred ecCCCCchhHH-HHHHHHHHHHHHc---CCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccc-cCc---ccchHH
Q 027626 133 DHGSRRRESNL-MLKQFVAMFREKT---GYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFL-FPG---RHWCQV 204 (221)
Q Consensus 133 aHGSrdpean~-~~~~LA~~L~~~~---~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL-~~G---~Hv~~D 204 (221)
+|||+...... ..+.+.+.|.+.. ....|+.| |+++.|+++|++++|.++|+++|+++|++. +++ .|+.+|
T Consensus 68 g~gSPL~~~t~~q~~~L~~~L~~~~~~~~~~~V~~a-mry~~P~i~d~l~~l~~~G~~~ivvlPlyPqyS~~ttgs~~~~ 146 (362)
T 1lbq_A 68 GGGSPIRKWSEYQATEVCKILDKTCPETAPHKPYVA-FRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINE 146 (362)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEE-ESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhcccCCCceEEee-cccCCCCHHHHHHHHHHcCCCeEEEEecchhccccchhHHHHH
Confidence 68998665443 3556666665543 24568999 599999999999999999999999999997 334 399999
Q ss_pred HHhccc-----cCcEEEeecC
Q 027626 205 VLSNFL-----DNISLNFYRH 220 (221)
Q Consensus 205 IP~~l~-----p~I~l~~a~p 220 (221)
|++.+. +++.+++.++
T Consensus 147 i~~~l~~~~~~~~i~i~~i~~ 167 (362)
T 1lbq_A 147 LWRQIKALDSERSISWSVIDR 167 (362)
T ss_dssp HHHHHHHHCTTCCSEEEEECC
T ss_pred HHHHHHhcccCCCceEEEecC
Confidence 998875 5787777654
No 13
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=97.74 E-value=9.8e-06 Score=74.35 Aligned_cols=127 Identities=12% Similarity=0.011 Sum_probs=85.2
Q ss_pred cCCCCCccchHHhhccChhhhcCCCceeeeeeccCCcCCCCCCCCCCCCccccCCCccccccccc--CCCCCCCCCCceE
Q 027626 52 HKPSETPNSWKADQNMSVESLALSPQFTVKRCSIGEVGTKNPIWVHPNSLNFQRGPSRTKHLSIK--SSSRDGVGDKDGV 129 (221)
Q Consensus 52 h~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~aL 129 (221)
|+.-|+++.++..+ ..| .++++ +- +..+- ||. +. .+...++.++ .... ..+++..|
T Consensus 142 s~~~~i~~~l~~~~-~~~-------~i~i~-~i-~~~~~-~p~-----~I-----~ala~~I~~~l~~~~~-~~~~~~~l 199 (362)
T 1lbq_A 142 SSINELWRQIKALD-SER-------SISWS-VI-DRWPT-NEG-----LI-----KAFSENITKKLQEFPQ-PVRDKVVL 199 (362)
T ss_dssp HHHHHHHHHHHHHC-TTC-------CSEEE-EE-CCCTT-CHH-----HH-----HHHHHHHHHHHHTSCS-TTGGGCEE
T ss_pred HHHHHHHHHHHhcc-cCC-------CceEE-Ee-cCCCC-CHH-----HH-----HHHHHHHHHHHHhcCc-ccCCCeEE
Confidence 66677777766552 223 56555 33 35777 776 66 3333333322 1111 12234689
Q ss_pred EEEecCCC-------CchhHHHHHHHHHHHHHHcCCc-eEEEEEeecC------CCCHHHHHHHHHHcCCCeEEEEcccc
Q 027626 130 IIVDHGSR-------RRESNLMLKQFVAMFREKTGYL-IVEPAHMELA------EPSIKDAFGSCVQQGANRVIVSPFFL 195 (221)
Q Consensus 130 LLVaHGSr-------dpean~~~~~LA~~L~~~~~~~-~V~vAFLE~a------~PsLeeaL~~L~~~G~~rIvVVPLFL 195 (221)
|+.+||.. || .+....+.++.+.++.+.. .+.++|-+-. +|.+++.+++| ++|+++|+|+|+.
T Consensus 200 lfSaHglP~~~~~~GDp-Y~~q~~~ta~ll~e~lg~~~~~~~~fQSr~G~~~WL~P~t~~~l~~L-~~G~k~vvVvP~g- 276 (362)
T 1lbq_A 200 LFSAHSLPMDVVNTGDA-YPAEVAATVYNIMQKLKFKNPYRLVWQSQVGPKPWLGAQTAEIAEFL-GPKVDGLMFIPIA- 276 (362)
T ss_dssp EEEEECCBHHHHTTTCS-HHHHHHHHHHHHHHHTTTCSCEEEEEECCCSSSCBCSCBHHHHHHHH-GGGCSCEEEECTT-
T ss_pred EEecCCCccccccCCCc-HHHHHHHHHHHHHHHcCCCCCEEEEEECCCCCcccCCCCHHHHHHHH-HcCCCeEEEECCe-
Confidence 99999953 33 5668888888998888754 5899998743 69999999999 9999999999975
Q ss_pred cCcccchH
Q 027626 196 FPGRHWCQ 203 (221)
Q Consensus 196 ~~G~Hv~~ 203 (221)
|.+.|++.
T Consensus 277 FvsD~lET 284 (362)
T 1lbq_A 277 FTSDHIET 284 (362)
T ss_dssp CSSCCHHH
T ss_pred echhhHhh
Confidence 56666653
No 14
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=96.54 E-value=0.0099 Score=54.45 Aligned_cols=95 Identities=7% Similarity=0.063 Sum_probs=66.6
Q ss_pred CCceEEEEecCCCC------chhHHHHHHHHHHHHHHcCCc-eEEEEEee-cC-----CCCHHHHHHHHHHcCCCeEEEE
Q 027626 125 DKDGVIIVDHGSRR------RESNLMLKQFVAMFREKTGYL-IVEPAHME-LA-----EPSIKDAFGSCVQQGANRVIVS 191 (221)
Q Consensus 125 ~~~aLLLVaHGSrd------pean~~~~~LA~~L~~~~~~~-~V~vAFLE-~a-----~PsLeeaL~~L~~~G~~rIvVV 191 (221)
++..||+.+||-.. ........+.++.+.++.+.. .+.++|-+ ++ +|.++|.+++|.++|+++|+|+
T Consensus 190 ~~~~LlfSaHgiP~~~~~~GDpY~~q~~~t~~lv~e~Lg~~~~~~l~~QSr~G~~~WL~P~t~d~l~~L~~~G~k~vvv~ 269 (359)
T 3hcn_A 190 SEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLV 269 (359)
T ss_dssp GGCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECCSCSSCBSSSBHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCChHhhcccCCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Confidence 34589999999842 124566777778888877754 47889975 22 5999999999999999999999
Q ss_pred cccccC-cccchHHHHhc----c--ccCc-EEEeec
Q 027626 192 PFFLFP-GRHWCQVVLSN----F--LDNI-SLNFYR 219 (221)
Q Consensus 192 PLFL~~-G~Hv~~DIP~~----l--~p~I-~l~~a~ 219 (221)
|..++. -..+..||-.+ + +.|+ .+.+.+
T Consensus 270 P~gFvsD~lETL~Eid~E~~~e~a~e~G~~~~~rip 305 (359)
T 3hcn_A 270 PIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAE 305 (359)
T ss_dssp CTTCCSCCCCCHHHHCHHHHHHHHHHTCCCEEEECC
T ss_pred CCccchhhHHhHHHHHHHHHHHHHHhCCCceEEEcC
Confidence 965444 34445676322 1 2577 466654
No 15
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=95.94 E-value=0.038 Score=50.56 Aligned_cols=72 Identities=10% Similarity=0.071 Sum_probs=47.6
Q ss_pred HHHHHHHHHcC---CceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccccc-Ccccch---HHHHhccc-----cCcE
Q 027626 147 QFVAMFREKTG---YLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLF-PGRHWC---QVVLSNFL-----DNIS 214 (221)
Q Consensus 147 ~LA~~L~~~~~---~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~-~G~Hv~---~DIP~~l~-----p~I~ 214 (221)
.+.+.|.+..+ ...|..|| .++.|.++|++++|.++|+++|+++|++-. ++..+. +++.+.+. ++++
T Consensus 78 ~L~~~L~~~~~~~~~~~V~~am-ry~~P~i~~~l~~l~~~G~~~ivvlPlyPqyS~~Ttgs~~~~~~~~~~~~~~~~~~~ 156 (359)
T 3hcn_A 78 GMVKLLDELSPNTAPHKYYIGF-RYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMK 156 (359)
T ss_dssp HHHHHHHHHCGGGCSEEEEEEE-SSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHTTCCCSSE
T ss_pred HHHHHHhhhcccccCceEEEEE-eeCCCCHHHHHHHHHhcCCCeEEEEECCccccccchhhHHHHHHHHHHHhccCCCCc
Confidence 34444544322 23688887 679999999999999999999999998763 333332 34443332 4566
Q ss_pred EEeec
Q 027626 215 LNFYR 219 (221)
Q Consensus 215 l~~a~ 219 (221)
+++-+
T Consensus 157 ~~~i~ 161 (359)
T 3hcn_A 157 WSTID 161 (359)
T ss_dssp EEEEC
T ss_pred eEEeC
Confidence 66543
No 16
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=51.47 E-value=75 Score=25.69 Aligned_cols=67 Identities=10% Similarity=0.045 Sum_probs=43.3
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCC-CHHHHHHHHHHcCCCeEEEEccc
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-SIKDAFGSCVQQGANRVIVSPFF 194 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~P-sLeeaL~~L~~~G~~rIvVVPLF 194 (221)
+..|.++.....++-+...+..+.+.+++. ++. +.+.+.....+ .-.+.++.+.+++++-|++.|..
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~-g~~-~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL-NVT-VEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH-TCE-EEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc-CCE-EEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 345777888888887777777777777664 543 44422211122 23456778888999999988863
No 17
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=51.08 E-value=11 Score=29.14 Aligned_cols=60 Identities=7% Similarity=0.089 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHH--HHHHHHHHcCCCeEEEEcccccCc
Q 027626 139 RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIK--DAFGSCVQQGANRVIVSPFFLFPG 198 (221)
Q Consensus 139 pean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLe--eaL~~L~~~G~~rIvVVPLFL~~G 198 (221)
|.+.++++.|...|++++|...+..-|+++..|.=+ |.-+++.++=.+.=..-|+.+..|
T Consensus 26 PSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPlV~ind 87 (111)
T 1xg8_A 26 PTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITMND 87 (111)
T ss_dssp CCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEETT
T ss_pred CCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceEEEECC
Confidence 678899999999999999999999999998777544 433333322122234455555554
No 18
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=43.11 E-value=1e+02 Score=24.48 Aligned_cols=54 Identities=22% Similarity=0.160 Sum_probs=30.8
Q ss_pred CCCceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCC-CHHHHHHHHHHc
Q 027626 124 GDKDGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEP-SIKDAFGSCVQQ 183 (221)
Q Consensus 124 ~~~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~P-sLeeaL~~L~~~ 183 (221)
..+.++||++||. ....+..-++.+-..... ...+++.. ..+ .+.+.+++..++
T Consensus 19 ~~~~~iII~sHG~----~A~gl~~s~~~i~G~~~~-v~av~~~~-~~~~~~~~~~~~~i~~ 73 (159)
T 3mtq_A 19 GMKRHYIFASHGS----FANGLLNSVELILGKQPD-IHTLCAYV-EEEVDLTQQVEALVAR 73 (159)
T ss_dssp SCCEEEEEEEETT----HHHHHHHHHHHHHCCCTT-EEEEEETS-CSSSCHHHHHHHHHHT
T ss_pred ccCceEEEEeCcH----HHHHHHHHHHHHcCCCCC-eEEEECCC-CCHHHHHHHHHHHHHh
Confidence 4678999999996 344455555555322121 22344432 234 677777776654
No 19
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=38.07 E-value=39 Score=28.71 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEEcc---cccCcccchHHHHhccc-cCcEEEeecC
Q 027626 169 AEPSIKDAFGSCVQQGANRVIVSPF---FLFPGRHWCQVVLSNFL-DNISLNFYRH 220 (221)
Q Consensus 169 a~PsLeeaL~~L~~~G~~rIvVVPL---FL~~G~Hv~~DIP~~l~-p~I~l~~a~p 220 (221)
.+-+.+|+...|.. +++|+|+|- -.+...|.-.+|.+.+. .+++++|+=|
T Consensus 32 ~~~~~~~~a~~l~~--A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIH 85 (203)
T 2fsv_C 32 KAGSAEDAAFIMKN--ASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIH 85 (203)
T ss_dssp CBCCHHHHHHHHHH--CSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred eecCHHHHHHHHHh--CCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34578888777764 689999994 36667899999999987 6999999865
No 20
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=37.13 E-value=75 Score=24.61 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=16.9
Q ss_pred CCceEEEEecCCCCchhHHHHHHHHHHHH
Q 027626 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFR 153 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpean~~~~~LA~~L~ 153 (221)
.+.++|+++||.+- ...+...++++-
T Consensus 3 ~~igiiIvtHG~s~---A~~l~~~a~~i~ 28 (139)
T 3gdw_A 3 ANVGVFVLMHGDST---ASSMLKTAQELL 28 (139)
T ss_dssp CCCEEEEEEESSSH---HHHHHHHHHHHH
T ss_pred CceeEEEEcCCHHH---HHHHHHHHHHHc
Confidence 45789999999853 334445555554
No 21
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=36.64 E-value=1.8 Score=34.23 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=29.6
Q ss_pred HHHhhcccCCCCCccchHHhhc------cChhhhcCCCceeeeeeccCCcCCCCCC
Q 027626 45 CKITSSLHKPSETPNSWKADQN------MSVESLALSPQFTVKRCSIGEVGTKNPI 94 (221)
Q Consensus 45 ~~~~~~~h~~~~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~p~ 94 (221)
.+|..++|.+.|||..+.+++. +.+ ..+++ ++ .++|+ ||.
T Consensus 89 lfL~~G~h~~~DIp~~l~~~~~~~sw~~~~~-------~~~i~-~~-~pLG~-~p~ 134 (156)
T 1tjn_A 89 LFISYGLHVTEDLPDLLGFPRGRGIKEGEFE-------GKKVV-IC-EPIGE-DYF 134 (156)
T ss_dssp CCSSCSHHHHTHHHHHHTCCCSSSCEEEEET-------TEEEE-EC-CCSTT-CHH
T ss_pred chhcCCchhHhHHHHHHHHHHhcccccccCC-------CceEE-Ee-CCCCC-CHH
Confidence 4678899999999999876544 333 45555 66 56999 887
No 22
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=36.13 E-value=43 Score=28.49 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHcCCCeEEEEcc---cccCcccchHHHHhccc-cCcEEEeecC
Q 027626 170 EPSIKDAFGSCVQQGANRVIVSPF---FLFPGRHWCQVVLSNFL-DNISLNFYRH 220 (221)
Q Consensus 170 ~PsLeeaL~~L~~~G~~rIvVVPL---FL~~G~Hv~~DIP~~l~-p~I~l~~a~p 220 (221)
+-+.+|+...|.. +++|+|+|- -.+...|.-.||.+.+. .+++++|+=|
T Consensus 32 ~~~~~~~a~~l~~--A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIH 84 (207)
T 1djl_A 32 EINLDNAIDMIRE--ANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIH 84 (207)
T ss_dssp BCCHHHHHHHHHH--CSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ecCHHHHHHHHHh--CCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeC
Confidence 4567888877764 689999993 36667888899999887 6999999865
No 23
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=35.12 E-value=1.5e+02 Score=22.55 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=17.1
Q ss_pred CCceEEEEecCCCCchhHHHHHHHHHHHH
Q 027626 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFR 153 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpean~~~~~LA~~L~ 153 (221)
.+.++|+++||.+- ...+...++++-
T Consensus 3 ~~igiiivsHG~~~---A~~l~~~a~~i~ 28 (130)
T 3gx1_A 3 AQVEVIVMMHGRST---ATSMVETVQELL 28 (130)
T ss_dssp SSCEEEEEEESSSH---HHHHHHHHHHHH
T ss_pred CceEEEEEcCCHHH---HHHHHHHHHHHc
Confidence 45789999999853 334445555554
No 24
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=34.81 E-value=55 Score=25.10 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=15.3
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHH
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMF 152 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L 152 (221)
.++||++||. ....+...++++
T Consensus 6 i~iiivsHG~----~A~gl~~~~~~i 27 (142)
T 3bed_A 6 PKLILMSHGR----MAEETLASTQMI 27 (142)
T ss_dssp SEEEEEEETT----HHHHHHHHHHHH
T ss_pred ccEEEEcChH----HHHHHHHHHHHH
Confidence 7999999994 344555555555
No 25
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=29.78 E-value=41 Score=28.19 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHcCCCeEEEEc---ccccCcccchHHHHhccc-cCcEEEeecC
Q 027626 171 PSIKDAFGSCVQQGANRVIVSP---FFLFPGRHWCQVVLSNFL-DNISLNFYRH 220 (221)
Q Consensus 171 PsLeeaL~~L~~~G~~rIvVVP---LFL~~G~Hv~~DIP~~l~-p~I~l~~a~p 220 (221)
-+.+|+...|.. +++|+|+| +-.+...|.-.||.+.+. .|+++.|+=|
T Consensus 18 ~~~~~~a~~l~~--A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIH 69 (186)
T 2bru_C 18 ITAEETAELLKN--SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIH 69 (186)
T ss_dssp --CHHHHHHHHH--CSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred cCHHHHHHHHHh--CCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 345777766654 68999999 345667888889998887 6999988854
No 26
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=29.77 E-value=87 Score=24.35 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=15.4
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHH
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMFR 153 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L~ 153 (221)
+.++||++||+ ....+...++++-
T Consensus 1 Migiii~sHg~----~A~gl~~~~~~i~ 24 (150)
T 3ipr_A 1 MLGIVIATHGA----LSDGAKDAATVIM 24 (150)
T ss_dssp CCEEEEEEETT----HHHHHHHHHHHHH
T ss_pred CCEEEEEECcH----HHHHHHHHHHHHc
Confidence 35899999994 3444455555553
No 27
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=25.95 E-value=1e+02 Score=23.90 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=16.3
Q ss_pred CCceEEEEecCCCCchhHHHHHHHHHHHH
Q 027626 125 DKDGVIIVDHGSRRRESNLMLKQFVAMFR 153 (221)
Q Consensus 125 ~~~aLLLVaHGSrdpean~~~~~LA~~L~ 153 (221)
++.++||++||. ....+...++.+-
T Consensus 2 ~~igiii~sHG~----~A~gl~~~~~~i~ 26 (144)
T 3lfh_A 2 KEKFVLIITHGD----FGKGLLSGAEVII 26 (144)
T ss_dssp CCEEEEEEEETT----HHHHHHHHHHHHH
T ss_pred CcceEEEEeCcH----HHHHHHHHHHHHc
Confidence 356899999995 3444455555553
No 28
>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36
Probab=25.34 E-value=1.5e+02 Score=22.01 Aligned_cols=33 Identities=21% Similarity=0.118 Sum_probs=19.4
Q ss_pred CCceEEEEecCCC---CchhHHHHHHHHHHHHHHcCC
Q 027626 125 DKDGVIIVDHGSR---RRESNLMLKQFVAMFREKTGY 158 (221)
Q Consensus 125 ~~~aLLLVaHGSr---dpean~~~~~LA~~L~~~~~~ 158 (221)
.+..+|++.||.. .......+..+++.+.++ ++
T Consensus 35 ~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~-g~ 70 (220)
T 2fuk_A 35 VQPVTAIVCHPLSTEGGSMHNKVVTMAARALREL-GI 70 (220)
T ss_dssp CCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTT-TC
T ss_pred cccCEEEEECCCCCcCCcccchHHHHHHHHHHHC-CC
Confidence 3467889999831 111223466777777664 44
No 29
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.18 E-value=2.5e+02 Score=22.16 Aligned_cols=64 Identities=9% Similarity=-0.001 Sum_probs=39.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcc
Q 027626 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (221)
Q Consensus 128 aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPL 193 (221)
.|-++..+..++-+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|.
T Consensus 7 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 7 TIGITAIGTDHDWDLKAYQAQIAEIERL-GG-TAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp EEEEEESCCSSHHHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHc-CC-EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4555555555665666666777766654 54 3444443321122356778888899999998876
No 30
>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}
Probab=24.39 E-value=2.1e+02 Score=21.03 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=34.2
Q ss_pred CceEEEEecCC---CCchhHHHHHHHHHHHHHHcCCceEEEEEeecC---CC---------CHHHHHHHHHHc-CCCeEE
Q 027626 126 KDGVIIVDHGS---RRRESNLMLKQFVAMFREKTGYLIVEPAHMELA---EP---------SIKDAFGSCVQQ-GANRVI 189 (221)
Q Consensus 126 ~~aLLLVaHGS---rdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a---~P---------sLeeaL~~L~~~-G~~rIv 189 (221)
...+||+.||. .....+..+..++..+.+. ++..+.+-+-..+ .+ .+.++++.+.++ +.++|+
T Consensus 30 ~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~-g~~v~~~d~~g~g~s~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~ 108 (208)
T 3trd_A 30 KSVTGIICHPHPLHGGTMNNKVVTTLAKALDEL-GLKTVRFNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIW 108 (208)
T ss_dssp CSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHT-TCEEEEECCTTSTTCCSCCCTTTHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCEEEEEcCCCCCCCccCCchHHHHHHHHHHC-CCEEEEEecCCCCCCCCCccchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 45688888983 1122233456777777664 4432222221111 11 255556666554 456787
Q ss_pred EEcc
Q 027626 190 VSPF 193 (221)
Q Consensus 190 VVPL 193 (221)
++-.
T Consensus 109 l~G~ 112 (208)
T 3trd_A 109 LAGF 112 (208)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7754
No 31
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.95 E-value=2.9e+02 Score=22.37 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=40.7
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccc
Q 027626 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (221)
Q Consensus 128 aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLF 194 (221)
.|-++-....++-+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|..
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 5 SVGIAMPTKSSARWIDDGNNIVKQLQEA-GY-KTDLQYADDDIPNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHHc-CC-EEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4555555566677777777777776654 54 35555543211123456788888999999988863
No 32
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=23.29 E-value=90 Score=23.15 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=35.2
Q ss_pred ceEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEc
Q 027626 127 DGVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSP 192 (221)
Q Consensus 127 ~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVP 192 (221)
..+++|+.||....+.+ .++.+++. +. .+.+--+-.-.|--.+.+.++. +++++|+++=
T Consensus 14 ~dv~iv~~Gs~~~~a~e----A~~~L~~~-Gi-~v~vi~~r~~~P~d~~~l~~~~-~~~~~vvvvE 72 (118)
T 3ju3_A 14 ADITFVTWGSQKGPILD----VIEDLKEE-GI-SANLLYLKMFSPFPTEFVKNVL-SSANLVIDVE 72 (118)
T ss_dssp CSEEEEEEGGGHHHHHH----HHHHHHHT-TC-CEEEEEECSSCSCCHHHHHHHH-TTCSCCCCCC
T ss_pred CCEEEEEECccHHHHHH----HHHHHHHC-CC-ceEEEEECeEecCCHHHHHHHH-cCCCEEEEEE
Confidence 45999999997554443 34455543 32 2433333334576667777776 4677776653
No 33
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=23.05 E-value=81 Score=24.65 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=22.3
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHH
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMF 152 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L 152 (221)
+.-+|++|.|....++.+.+.+|++++
T Consensus 35 krPvil~G~g~~~~~a~~~l~~lae~~ 61 (170)
T 3cf4_G 35 KRPLLMVGTLALDPELLDRVVKISKAA 61 (170)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCccchhHHHHHHHHHHHh
Confidence 356999999998888888888888776
No 34
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=22.96 E-value=2.8e+02 Score=21.91 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=40.3
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcc
Q 027626 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPF 193 (221)
Q Consensus 128 aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPL 193 (221)
.|-++.....++-+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|.
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 10 IVGFTIVNDKHEFAQRLINAFKAEAKAN-KY-EALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHHT-TC-EEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHc-CC-EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4555555555666666677777666654 54 3555544322222346778888999999998876
No 35
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=22.94 E-value=2e+02 Score=21.09 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEcccccCcccchHHHHhccccCcEEEee
Q 027626 144 MLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFFLFPGRHWCQVVLSNFLDNISLNFY 218 (221)
Q Consensus 144 ~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLFL~~G~Hv~~DIP~~l~p~I~l~~a 218 (221)
.+..+.+.+.+.. ..+.++.-.+..+.+.+++.+..++|++=-++++-.-..+......+......|+++.+.
T Consensus 15 ~~~~~~~~i~~A~--~~I~i~~~~~~~~~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~ 87 (155)
T 1byr_A 15 ARVLVLSAIDSAK--TSIRMMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTD 87 (155)
T ss_dssp HHHHHHHHHHHCS--SEEEEEESSBCCHHHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHh--hEEEEEEEEeCCHHHHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEc
Confidence 3455666665432 345555544445668888888888998744445533221111112222333467777654
No 36
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=22.53 E-value=84 Score=23.74 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=15.2
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHH
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMF 152 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L 152 (221)
+.++||++||. ....+...++++
T Consensus 1 mi~iii~sHG~----~A~gl~~~~~~i 23 (135)
T 1pdo_A 1 TIAIVIGTHGW----AAEQLLKTAEML 23 (135)
T ss_dssp CCEEEEECSBT----HHHHHHHHHHHH
T ss_pred CceEEEEeChH----HHHHHHHHHHHH
Confidence 35799999994 344555555555
No 37
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=21.80 E-value=17 Score=28.50 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=14.1
Q ss_pred ceeeeeeccCCcCCCCCCC
Q 027626 77 QFTVKRCSIGEVGTKNPIW 95 (221)
Q Consensus 77 ~~~~~~~~~~~~g~~~p~~ 95 (221)
.+++.++-..++|| ||.|
T Consensus 38 ~l~vgr~h~~pVGP-Hp~~ 55 (122)
T 2peb_A 38 EVQLGRWFDKPIGP-HPKG 55 (122)
T ss_dssp CCEEEEEESSCCTT-CSSE
T ss_pred CeeecCCccccCCC-CCCc
Confidence 57776677788999 9985
No 38
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Probab=21.26 E-value=2.4e+02 Score=21.38 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=21.8
Q ss_pred CceEEEEecCCCCchhHHHHHHHHHHHHHHcCC
Q 027626 126 KDGVIIVDHGSRRRESNLMLKQFVAMFREKTGY 158 (221)
Q Consensus 126 ~~aLLLVaHGSrdpean~~~~~LA~~L~~~~~~ 158 (221)
+..+||+-||.........+..++..+.+. ++
T Consensus 45 ~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~-G~ 76 (270)
T 3pfb_A 45 IYDMAIIFHGFTANRNTSLLREIANSLRDE-NI 76 (270)
T ss_dssp SEEEEEEECCTTCCTTCHHHHHHHHHHHHT-TC
T ss_pred CCCEEEEEcCCCCCccccHHHHHHHHHHhC-Cc
Confidence 356788889987554345577888888765 44
No 39
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens}
Probab=21.15 E-value=1.3e+02 Score=22.27 Aligned_cols=66 Identities=5% Similarity=-0.013 Sum_probs=33.2
Q ss_pred eEEEEecCCCCch--hHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHc-CC-CeEEEEcc
Q 027626 128 GVIIVDHGSRRRE--SNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQ-GA-NRVIVSPF 193 (221)
Q Consensus 128 aLLLVaHGSrdpe--an~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~-G~-~rIvVVPL 193 (221)
..||+-||..... .......++..+.+..++..+.+-+-....+++.+.++.+.+. +. ++++++-.
T Consensus 5 p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~~~~~~~~~~~~~~l~~~~~~~lvG~ 74 (194)
T 2qs9_A 5 SKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFMETELHCDEKTIIIGH 74 (194)
T ss_dssp CEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTTCCHHHHHHHHHHTSCCCTTEEEEEE
T ss_pred CEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCcccHHHHHHHHHHHhCcCCCEEEEEc
Confidence 3567778875432 1112223556665431333232222222346777777777653 44 56776654
No 40
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.08 E-value=3.1e+02 Score=21.62 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=41.9
Q ss_pred eEEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccc
Q 027626 128 GVIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (221)
Q Consensus 128 aLLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLF 194 (221)
.|-++.-...++-+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|..
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 17 TIGVLTTYISDYIFPSIIRGIESYLSEQ-GY-SMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp EEEEEESCSSSTTHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHHHC-CC-EEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 4555555566677777777777777654 54 35555443222224467788889999999998864
No 41
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=20.30 E-value=90 Score=24.98 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCC-eEEE
Q 027626 144 MLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGAN-RVIV 190 (221)
Q Consensus 144 ~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~-rIvV 190 (221)
.+.++.+.+... ...+.+++-.+..+.+.++|.+..++|++ +|++
T Consensus 47 ~~~~ll~~I~~A--~~sI~i~~y~~~~~~i~~aL~~aa~rGV~Vrii~ 92 (196)
T 4ggj_A 47 SLSRLLRALLAA--RSSLELCLFAFSSPQLGRAVQLLHQRGVRVRVIT 92 (196)
T ss_dssp HHHHHHHHHHTC--SSEEEEEESCBCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHh--heEEEEEEEEeCCHHHHHHHHHHHHcCCcEEEEE
Confidence 456666777543 33567776666788899999999999997 4443
No 42
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=20.22 E-value=3.1e+02 Score=21.32 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=39.7
Q ss_pred EEEEecCCCCchhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHHcCCCeEEEEccc
Q 027626 129 VIIVDHGSRRRESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQQGANRVIVSPFF 194 (221)
Q Consensus 129 LLLVaHGSrdpean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~~G~~rIvVVPLF 194 (221)
|-++-....++-+...+..+.+.+++. ++ .+.+...+.....-.+.++.+.+++++-|++.|..
T Consensus 5 Igvi~~~~~~~~~~~~~~gi~~~a~~~-g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 5 LGFILPDLENPSYARIAKQLEQGARAR-GY-QLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHT-TC-EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred EEEEeCCCcChhHHHHHHHHHHHHHHC-CC-EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 444445555666777777777766654 54 35555443211224456788888999999988864
No 43
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=20.03 E-value=3.7e+02 Score=22.16 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=38.7
Q ss_pred eEEEEecCCCC-chhHHHHHHHHHHHHHHcCCceEEEEEeecCCCCHHHHHHHHHH--cCCCeEEEEc
Q 027626 128 GVIIVDHGSRR-RESNLMLKQFVAMFREKTGYLIVEPAHMELAEPSIKDAFGSCVQ--QGANRVIVSP 192 (221)
Q Consensus 128 aLLLVaHGSrd-pean~~~~~LA~~L~~~~~~~~V~vAFLE~a~PsLeeaL~~L~~--~G~~rIvVVP 192 (221)
.|.++..+..+ +-+...+..+.+..++. ++ .+.+...+.....-.+.++.+.+ ++++-|++.|
T Consensus 5 ~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-g~-~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 5 SVVFLNPGNSTETFWVSYSQFMQAAARDL-GL-DLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp EEEEEECSCTTCHHHHHHHHHHHHHHHHH-TC-EEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHc-CC-eEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 45566666655 66777777777776654 54 35555443211112456777887 5899898877
Done!