BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027629
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/221 (57%), Positives = 162/221 (73%), Gaps = 10/221 (4%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLD 60
+Y+ PTGWKFFGNLMDA S+CGEESFGTGSDHIREKDG+WAVLAWLSILA + +
Sbjct: 351 LYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---- 406
Query: 61 GGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGI 120
+VEDI++ HW +GR+++TRYDYE V+A A ++M +L + V
Sbjct: 407 -----SVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSA- 460
Query: 121 CSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQY 180
V V AD FEY DPVDGS+SK+QG+R +F DGSR++FRLSGTGS GATIRLYI+ Y
Sbjct: 461 NDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSY 520
Query: 181 EKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 221
EKD +K +D Q LAPL+ +ALK+S++++ TGR+APTVIT
Sbjct: 521 EKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 561
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/221 (57%), Positives = 162/221 (73%), Gaps = 10/221 (4%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLD 60
+Y+ PTGWKFFGNLMDA S+CGEESFGTGSDHIREKDG+WAVLAWLSILA + +
Sbjct: 351 LYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---- 406
Query: 61 GGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGI 120
+VEDI++ HW +GR+++TRYDYE V+A A ++M +L + V
Sbjct: 407 -----SVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSA- 460
Query: 121 CSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQY 180
V V AD FEY DPVDGS+SK+QG+R +F DGSR++FRLSGTGS GATIRLYI+ Y
Sbjct: 461 NDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSY 520
Query: 181 EKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 221
EKD +K +D Q LAPL+ +ALK+S++++ TGR+APTVIT
Sbjct: 521 EKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 561
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 166/221 (75%), Gaps = 16/221 (7%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLD 60
+++ PTGWKFFGNLMDAGL ++CGEESFGTGS+HIREKDGIWAVLAWL+ILAHKNK N D
Sbjct: 368 LFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNK-NTD 426
Query: 61 GGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGI 120
VTVE+IV ++W +GR+YY+RYDYE VD+ A ++M +L ++ + +G
Sbjct: 427 --HFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHL---KTKFQYFEQLKQGN 481
Query: 121 CSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQY 180
+D+ ++Y DPVD S+SK+QG+R++F DGSR++FRLSGTGS GATIR+Y EQ+
Sbjct: 482 KADI--------YDYVDPVDQSVSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQF 533
Query: 181 EKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 221
E+ + ++ ALA ++++ L++S + QFTGR+ PTVIT
Sbjct: 534 EQ--QQIQHETATALANIIKLGLEISDIAQFTGRNEPTVIT 572
>pdb|1TUO|A Chain A, Crystal Structure Of Putative Phosphomannomutase From
Thermus Thermophilus Hb8
Length = 464
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 5 PTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKE 57
P G+K+ G C I GEES G G +H+ E+DGI L L +A K+
Sbjct: 312 PVGFKWIKEEFLKGDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAATGKD 365
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGT------GSDHIREKDGIWAVLAWLSILAHK 54
+Y+ P G+K F + G GEES G G +KDGI L ++A +
Sbjct: 346 VYETPVGFKHFVAGLLEGWLGFAGEESAGASFLRFDGRPFSTDKDGILMGLLAAELMAKR 405
Query: 55 NKENLDGGKLVTVEDIVRKHWATYGRHYYTRYD 87
+ E + K GR YY R D
Sbjct: 406 GQ-----APDALYEALAEK----LGRPYYARKD 429
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 142 SISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYI 177
S +H G DGS+L F LS TGS + LY+
Sbjct: 214 SFPRHNGAPAFSPDGSKLAFALSKTGS----LNLYV 245
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 159 LVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPT 218
LV E + ++Y E+Y DP +D EA A L + K E F+ +P
Sbjct: 219 LVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAKLSNLGAKFGPAEGFSLEGSPA 278
>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 142 SISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYI 177
S +H G DGS+L F LS TGS + LY+
Sbjct: 220 SFPRHNGAPAFSPDGSKLAFALSKTGS----LNLYV 251
>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 142 SISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYI 177
S +H G DGS+L F LS TGS + LY+
Sbjct: 220 SFPRHNGAPAFSPDGSKLAFALSKTGS----LNLYV 251
>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 142 SISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYI 177
S +H G DGS+L F LS TGS + LY+
Sbjct: 220 SFPRHNGAPAFSPDGSKLAFALSKTGS----LNLYV 251
>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 142 SISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYI 177
S +H G DGS+L F LS TGS + LY+
Sbjct: 241 SFPRHNGAPAFSPDGSKLAFALSKTGS----LNLYV 272
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 142 SISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYI 177
S +H G DGS+L F LS TGS + LY+
Sbjct: 242 SFPRHNGAPAFSPDGSKLAFALSKTGS----LNLYV 273
>pdb|1Y4T|A Chain A, Ferric Binding Protein From Campylobacter Jejuni
pdb|1Y4T|D Chain D, Ferric Binding Protein From Campylobacter Jejuni
pdb|3E13|X Chain X, Iron Reconstituted Ferric Binding Protein From
Campylobacter Jejuni
Length = 322
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 34 HIREKDGIW-AVLAWLSILAHKNKENLDGGKLVTVEDIVRKHW 75
H+R+KD W A+ I+A+ N+D K+ ED+ + +
Sbjct: 88 HLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEF 130
>pdb|1R3H|A Chain A, Crystal Structure Of T10
pdb|1R3H|C Chain C, Crystal Structure Of T10
pdb|1R3H|E Chain E, Crystal Structure Of T10
pdb|1R3H|G Chain G, Crystal Structure Of T10
Length = 260
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 82 YYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVV---NADEFEYKDP 138
+Y + Y++ D E ++ S++P+++ ++G CSDV + + DP
Sbjct: 109 WYNQLAYDSEDLPTLSENPSSCTVGNSTVPQISQHLEGHCSDVLQKYLEKGKERLLRSDP 168
Query: 139 VDGSISKH 146
+++H
Sbjct: 169 PKAHVTRH 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,204,198
Number of Sequences: 62578
Number of extensions: 311979
Number of successful extensions: 775
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 22
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)