BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027630
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 144
G K+F+G LP T DLR +F+R+G++ +V + D ++ RGFGF++F EE + V+
Sbjct: 95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVT 154
Query: 145 R-RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 199
R + G+QV I A P D +G + +G G +G + ++
Sbjct: 155 NERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINM 210
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146
K+FVG L E T E+L RYF RFG I+D V K+ + RGFGFVTFA+ + V +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 147 S-HEICGQQVAIDSATP 162
H + G+ + P
Sbjct: 68 GPHTLDGRTIDPKPCNP 84
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 144
KKIFVG L EAT E +R YF +FG I + +P DPK RGF F+TF EE +V
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 145 RRSHEICGQQVAIDSATP 162
++ H + G + I A P
Sbjct: 219 KKFHTVSGSKCEIKVAQP 236
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 145
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 146 RSHEICGQQV 155
+ H + G+ +
Sbjct: 136 KEHRLDGRVI 145
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 60/124 (48%), Gaps = 18/124 (14%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
KKIFVG L T ED++ YF +FG I D + D + HRGFGFVTF E V D+V
Sbjct: 118 KKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
Query: 146 -RSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGY 204
HEI + V A P + P+ N A+T R G +D+ +
Sbjct: 178 IHFHEINNKMVECKKAQPKEVMLPA-----NLAKT------------RAAGRSAYDNIMW 220
Query: 205 GMGS 208
G+G+
Sbjct: 221 GLGT 224
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 145
K+F+G L + + E LR YF R+G I + V KDP RGFGFVTF++ D+V ++
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 146 RSHEICGQQVAIDSATP 162
+HE+ G++V A P
Sbjct: 90 GTHELDGKKVDPKVAFP 106
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF-AEEVVADRVSR 145
KIFVG L E + E+++ YF +FG I++V +P D +++ +GF F+TF +E+VV D +
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 146 RSHEICGQQVAIDSATP 162
+I G++V + ATP
Sbjct: 197 PKQKIAGKEVDVKRATP 213
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
+K+FVG L E T ++LR +F ++G I + V DP+ RGF F+ F D+VS
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 146 RSHEICGQQ 154
I +
Sbjct: 116 ADEHIINSK 124
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
KKIFVG L T ED+++YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 146 -RSHEICGQQVAIDSATPLDDAGPS 169
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 147 S-HEICGQQVAIDSATP 162
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
KKIFVG L T ED++ YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 146 -RSHEICGQQVAIDSATPLDDAGPS 169
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 147 S-HEICGQQVAIDSATP 162
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
KKIFVG L T ED++ YF +FG++ D + D HRGFGFVTF E + ++V
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 168
Query: 146 -RSHEICGQQVAIDSATPLDDAGPS 169
HEI + V A P + P+
Sbjct: 169 IHFHEINNKMVECKKAQPKEVMSPT 193
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 147 S-HEICGQQVAIDSATP 162
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
KKIFVG LP T E+ R+YF +G + DV + D RGFGFV+F E D V
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169
Query: 146 RS-HEICGQQVAIDSATPLD 164
++ H++ G+QV + A P D
Sbjct: 170 KTFHDLSGKQVEVKRALPKD 189
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 145
K+FVG + E + LR +F+ +G + V +D K TG RGFGFV F++ V DRV +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRD-KLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 146 RSHEICGQQVAIDSA 160
H I ++V + A
Sbjct: 66 EKHSIDTREVDVKRA 80
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 86 KKIFVGRL-PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV- 143
KKIFVG L P+ T E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 144 SRRSHEICGQQVAIDSATPLD 164
++ H + G + I A P +
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKE 233
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 145
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 146 RSHEICGQQVAIDSATPL 163
+ H + G+ + A +
Sbjct: 130 KEHRLDGRVIDPKKAMAM 147
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
KKIFVG L ED+++YF +FG++ D + D HRGFGFVTF E V ++V
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 146 -RSHEICGQQVAIDSATPLD 164
HEI + V A P +
Sbjct: 170 IHFHEINNKMVECKKAQPKE 189
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 76 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 135
G SQ K+F+G L + + + LR YFS+FG I + V +DP RGFGFVTFA
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 136 EEVVADRV-SRRSHEICGQQVAIDSATP 162
+ D+V + HE+ + + A P
Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFP 98
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
KKIFVG L ED+++YF +FG++ D + D HRGFGFVTF E V ++V
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
Query: 146 -RSHEICGQQVAIDSATPLD 164
HEI + V A P +
Sbjct: 170 IHFHEINNKMVECKKAQPKE 189
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 76 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 135
G SQ K+F+G L + + + LR YFS+FG I + V +DP RGFGFVTFA
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 136 EEVVADRVSRRSHE 149
+ D+V + H
Sbjct: 71 DPASVDKVLGQPHH 84
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
+K+FVGR ++ +AE+LR++FS++G ++DV++PK R F FVTFA++ VA +
Sbjct: 191 RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCG 245
Query: 146 RSHEICGQQVAIDSATP 162
I G V + +A P
Sbjct: 246 EDLIIKGVSVHVSTAEP 262
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 88 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSRR 146
+ V LP + T +DL+ YFS FG ++ V V KD K TGH +GFGFV FA+ +V +
Sbjct: 107 LIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAK-TGHSKGFGFVRFADYETQVKVMSQ 165
Query: 147 SHEICG 152
H I G
Sbjct: 166 RHMIDG 171
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
KIFVG +P +L+ YF+RFG + +V + D ++ RGFGF+TF +E D+ V+
Sbjct: 114 NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 173
Query: 145 RRSHEICGQQVAIDSATPLD 164
H+I G++V + A P D
Sbjct: 174 MHFHDIMGKKVEVKRAEPRD 193
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 145
K+FVG L T E LR YFS++G ++D + KD RGFGFV F + V ++
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 146 RSHEICGQQVAIDSATP 162
R H + G+ + TP
Sbjct: 71 RPHTLDGRNIDPKPCTP 87
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 77 RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 136
R +SS+ KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +
Sbjct: 106 RSDSSKS--NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
Query: 137 EVVADR-VSRRSHEICGQQVAIDSATPLD 164
E D+ V+ H+I G++V + A P D
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRD 192
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 145
K+FVG L T E LR YFS++G ++D + KD RGFGFV F + V ++
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 146 RSHEICGQQVAIDSATP 162
R H + G+ + TP
Sbjct: 71 RPHTLDGRNIDPKPCTP 87
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
KIFVG +P +LR YF +FG + +V + D ++ RGFGF+TF +E D+ V+
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 145 RRSHEICGQQVAIDSATPLD 164
H+I G++V + A P D
Sbjct: 173 MHFHDIMGKKVEVKRAEPRD 192
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 145
K+FVG L T E LR YFS++G ++D + KD RGFGFV F + V ++
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 146 RSHEICGQQVAIDSATP 162
R H + G+ + TP
Sbjct: 71 RPHTLDGRNIDPKPCTP 87
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 144
+KIFVG L T + +R ++S+FG I D+ V +DP RGFGFVTF+ + D +
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 145 RRSHEICGQQVAIDSATPLDDAGPSQN 171
+R H I G+ V A P DD S++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSES 109
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
K+++V + ++ T + L YF+++G + + D RGFGFVTF + D+ V
Sbjct: 114 KRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVL 173
Query: 145 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGG 182
++SH + G + + D+ +Q M ET GG
Sbjct: 174 QKSHMVNGHRCDVRKGLSKDEMSKAQ--MNRDRETRGG 209
>sp|Q921F2|TADBP_MOUSE TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1
Length = 414
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
+K+FVGR ++ TAE+L+++F ++G ++DV++PK R F FVTFA++ VA +
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG 245
Query: 146 RSHEICGQQVAIDSATP 162
I G V I +A P
Sbjct: 246 EDLIIKGISVHISNAEP 262
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 140
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 141 DRVSRRSHEICGQQVAIDSATPLDDAGPSQ 170
+V + H I G+ D P P +
Sbjct: 159 VKVMSQRHMIDGRWC--DCKLPNSKQSPDE 186
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 139
++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E
Sbjct: 91 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150
Query: 140 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 184
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 151 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 206
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 144
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 145 RRSHEI----CGQQVAI 157
++ H + C +VA+
Sbjct: 242 KKYHNVGLSKCEIKVAM 258
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 139
++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E
Sbjct: 91 AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150
Query: 140 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 184
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 151 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 206
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 144
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 145 RRSHEI----CGQQVAI 157
++ H + C +VA+
Sbjct: 242 KKYHNVGLSKCEIKVAM 258
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 139
++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E
Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESES 148
Query: 140 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 184
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 149 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 204
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 144
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 145 RRSHEI----CGQQVAI 157
++ H + C +VA+
Sbjct: 240 KKYHNVGLSKCEIKVAM 256
>sp|Q5ZLN5|TADBP_CHICK TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1
Length = 414
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
+K+FVGR ++ TA++L+++F+++G ++DV++PK R F FVTFA++ VA +
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCG 245
Query: 146 RSHEICGQQVAIDSATP 162
I G V I +A P
Sbjct: 246 EDLIIKGISVHISNAEP 262
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 140
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F +
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIK-TGHSKGFGFVRFTDYETQ 158
Query: 141 DRVSRRSHEICGQQVAIDSATPLDDAGPSQ 170
+V + H I G+ D P P +
Sbjct: 159 VKVMSQRHMIDGRWC--DCKLPNSKQSPDE 186
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVS 144
+K+F+G L T E L+++F ++G I+DV V KDPK RGFGF+T++ +V D +
Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76
Query: 145 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPM-----RTYGRMYGSL 197
R H++ G+ V A P + G + GG M R Y + YG++
Sbjct: 77 ARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTV 134
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 71 PGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFG 130
P + GR E+ + KK+FVG + +E DLR YF ++G ++ + D + RGF
Sbjct: 94 PRTEIGRPEAGATV-KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFA 152
Query: 131 FVTFAEEVVADRVS-RRSHEICGQQVAIDSATP 162
FV F + D++ R+H+I G+ + + A P
Sbjct: 153 FVEFDDYDPVDKICLSRNHQIRGKHIDVKKALP 185
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
+K+FVGR ++ T ++LR +FS++G ++DV++PK R F FVTFA++ +A +
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG 245
Query: 146 RSHEICGQQVAIDSATP 162
I G V I +A P
Sbjct: 246 EDLIIKGISVHISNAEP 262
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 140
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 141 DRVSRRSHEICG 152
+V + H I G
Sbjct: 159 VKVMSQRHMIDG 170
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
+K+FVGR ++ T ++LR +FS++G ++DV++PK R F FVTFA++ +A +
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG 245
Query: 146 RSHEICGQQVAIDSATP 162
I G V I +A P
Sbjct: 246 EDLIIKGISVHISNAEP 262
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 140
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 141 DRVSRRSHEICG 152
+V + H I G
Sbjct: 159 VKVMSQRHMIDG 170
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 144
KK+FVG L E T E +++YF FG I ++ +P D K RGF FVT+ EE V +
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 145 RRSHEICGQQVAIDSATP 162
R H+I + I A P
Sbjct: 171 SRFHQIGTGKCEIKVAQP 188
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 145
K+F+G L + + +DL Y SRFG ++D + DP RGFGFV F + V D+V
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 146 RSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 184
+ H++ G+ + A L P + + + FGG+G
Sbjct: 87 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFG 135
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 144
KK+FVG L E T E +++YF FG I ++ +P D K RGF FVT+ EE V +
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 145 RRSHEICGQQVAIDSATP 162
R H+I + I +A P
Sbjct: 171 SRFHQIGTGKCEIKAAQP 188
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 145
K+F+G L + + +DL Y SRFG +LD + DP RGFGFV F + V D+V
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 146 RSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 184
H++ G+ + A L P + + + FGG+G
Sbjct: 87 NEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFG 135
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 144
KK+FVG L E T E +++YF FG I ++ +P D K RGF FVT+ EE V +
Sbjct: 119 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLE 178
Query: 145 RRSHEICGQQVAIDSATP 162
R H+I + I +A P
Sbjct: 179 SRFHQIGTGKCEIKAAQP 196
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 143
I K+F+G L + + +DL Y SRFG +LD + DP RGFGFV F + V D+V
Sbjct: 32 IRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKV 91
Query: 144 -SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 184
+ H++ G+ + A L P + + + FGG+G
Sbjct: 92 LETKEHKLDGKLIDPKRAKALQGKEPPKKVFVGGLSPETTEEQIKQYFGGFG 143
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
+K+F+G L T E+L+ +F ++G I+DV V KDP+ RGFGF+T++ + D +
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 146 -RSHEICGQQVAIDSATPLDD 165
R H+I G+ V A P D
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQD 111
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS- 144
KK+FVG L + + +R YF FG I+D+ + D + RGF FV F + D+V
Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVL 181
Query: 145 RRSHEICGQQVAIDSATP 162
++ H++ G+ V + A P
Sbjct: 182 QKQHQLNGKMVDVKKALP 199
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146
K+F+G L + T ++LR YF ++G + D+ + KDP RGFGF++F + D V +
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 147 SHEICGQQVAIDSATPLDD 165
H + G+ + A P D+
Sbjct: 220 QHILDGKVIDPKRAIPRDE 238
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146
KIFVG + + ++ +FS++G I+D + D RGFGFVT+ DRV +
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 147 SH-EICGQQVAIDSATP 162
+ +++ I A P
Sbjct: 304 KFIDFKDRKIEIKRAEP 320
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
+K+F+G L T + L+ +F ++G I+DV V KDPK RGFGF+T+++ + D
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 146 -RSHEICGQQVAIDSATP 162
R H+I G+ V A P
Sbjct: 84 ARPHKIDGRTVEPKRAVP 101
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS- 144
KK+FVG L + E LR YF FG+I+ V + D RGF F+ F + D++
Sbjct: 115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIIL 174
Query: 145 RRSHEICGQQVAIDSATPLDD 165
+++H I + + + A D
Sbjct: 175 QKTHSIKNKTLDVKKAIAKQD 195
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146
K+F+G L E T + LR YF +FG +LD V +D RGFGF+TF + V +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 147 SHEICGQQVAIDSATPLDD 165
H + G+ + A P ++
Sbjct: 224 EHHLDGKIIDPKRAIPREE 242
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE-VVA 140
Q K+FVG +P + T E+ R +F++FGR+LD + D RGFGFVT+ E V
Sbjct: 243 QEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
Query: 141 DRVSRRSHEICGQQVAIDSATP 162
+S+ I G+ V + ATP
Sbjct: 303 ATMSQPYITIHGKPVEVKRATP 324
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 144
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 145 RRSHEICGQQVAIDSATP 162
R H+I + I A P
Sbjct: 175 SRYHQIGSGKCEIKVAQP 192
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 145
K+F+G L + + +DL Y SRFG ++D + DP RGFGFV F + ++V
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 146 RSHEICGQQVAIDSATPLDDAGPSQNFMM 174
+ H++ G+ + A L P + +
Sbjct: 91 KEHKLDGKLIDPKRAKALKGKEPPKKVFV 119
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 67 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG- 125
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V + KD KRTG
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD-KRTGQ 159
Query: 126 HRGFGFVTFAEEVVADRVSRRSH 148
+G FV +A ADR R H
Sbjct: 160 QQGCCFVKYATSKDADRAIRALH 182
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 75 YGRGESSQRIGK---KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGF 131
Y GE +RIG K+FVG L ++AT +++ F +FG + DVY+ +D R RG GF
Sbjct: 198 YADGER-ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGF 255
Query: 132 VTFAEEVVA 140
V ++ + A
Sbjct: 256 VKYSSKETA 264
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 144
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 145 RRSHEICGQQVAIDSATP 162
R H+I + I A P
Sbjct: 174 SRYHQIGSGKCEIKVAQP 191
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 145
K+F+G L + + +DL Y SRFG ++D + DP RGFGFV F + D+V
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 146 RSHEICGQQVAIDSATPLDDAGPSQNFMM 174
+ H++ G+ + A L P + +
Sbjct: 90 KEHKLDGKLIDPKRAKALKGKEPPKKVFV 118
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 144
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 145 RRSHEICGQQVAIDSATPLDDAG 167
R H I G+ V A +++G
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESG 91
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
KK+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 159
Query: 145 RRSHEICGQQVAIDSATPLDDAGPSQN 171
++ H I G + A + Q+
Sbjct: 160 QKYHTINGHNAEVRKALSRQEMQEVQS 186
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 144
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 145 RRSHEICGQQVAIDSATPLDDAG 167
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 144
KK+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D++
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFL 171
Query: 145 RRSHEICGQQVAIDSATPLDDAGPSQN 171
++ H I G + A + Q+
Sbjct: 172 QKYHTINGHNAEVRKALSRQEMQEVQS 198
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 144
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 145 RRSHEICGQQVAIDSATPLDDAG 167
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
KK+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 171
Query: 145 RRSHEICGQQVAIDSATPLDDAGPSQN 171
++ H I G + A + Q+
Sbjct: 172 QKYHTINGHNAEVRKALSRQEMQEVQS 198
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 144
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 145 RRSHEICGQQVAIDSATPLDDAG 167
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
KK+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 171
Query: 145 RRSHEICGQQVAIDSATPLDDAGPSQN 171
++ H I G + A + Q+
Sbjct: 172 QKYHTINGHNAEVRKALSRQEMQEVQS 198
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 144
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 145 RRSHEICGQQVAIDSATPLDDAG 167
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
KK+FVG + ++ LR YF +G+I + + D + RGFGFVTF + D+ V
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 171
Query: 145 RRSHEICGQQVAIDSA 160
++ H I G + A
Sbjct: 172 QKHHTINGHNAEVRKA 187
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 144
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 145 RRSHEICGQQVAIDSATP 162
R H+I + I A P
Sbjct: 196 SRYHQIGSGKCEIKVAQP 213
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV- 143
G K+F+G L + + +DL Y SRFG ++D + DP RGFGFV F + D+V
Sbjct: 50 GNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 109
Query: 144 SRRSHEICGQQVAIDSATPLDDAGPSQNFMM 174
+ H++ G+ + A L P + +
Sbjct: 110 ELKEHKLDGKLIDPKRAKALKGKEPPKKVFV 140
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145
+K+F+G L T E+L+ ++ ++G+++DV V +D RGFGF+T+ + ++ DR
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 146 -RSHEICGQQVAIDSATP 162
R H I G+ V A P
Sbjct: 92 NRPHIIDGKTVEAKRALP 109
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
KK+FVG L E LR YF +FG ++ V + D RGF FV F + D+ +
Sbjct: 123 KKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAIL 182
Query: 145 RRSHEI 150
++ H I
Sbjct: 183 KKQHAI 188
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 144
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 145 RRSHEICGQQVAIDSATPLD 164
R H+I + I A P +
Sbjct: 293 SRYHQIGSGKCEIKVAQPKE 312
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 145
K+F+G L + + +DL Y SRFG ++D + DP RGFGFV F + D+V
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 146 RSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 184
+ H++ G+ + A L P + + E FG +G
Sbjct: 209 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFG 257
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 143
+K+F+G L E T + LR +F ++G++ D V +DP+ RGFGFVT++ EEV A +
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS-M 85
Query: 144 SRRSHEICGQQVAIDSATPLDDA 166
S R H++ G+ V A +D+
Sbjct: 86 SARPHKVDGRVVEPKRAVSREDS 108
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
KKIFVG + ++ LR Y +G+I + V +D + RGF FVTF + D+ V
Sbjct: 118 KKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 177
Query: 145 RRSHEICGQQVAIDSA 160
++ H I G + A
Sbjct: 178 QKYHTINGHNCEVKKA 193
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 144
+K+F+G L + T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 145 RRSHEICGQQVAIDSATPLDDAG 167
R H I G+ V A +++G
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESG 91
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
KK+FVG + ++ LR YF+ +G+I + + D + RGFGFVTF + D+ V
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 159
Query: 145 RRSHEICGQQVAIDSATPLDDAGPSQN 171
++ H I G + A + Q+
Sbjct: 160 QKYHTINGHNAEVRKALSRQEMQEVQS 186
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 143
+K+F+G L E T + LR +F ++G++ D V +DP+ RGFGFVT++ EEV A +
Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS-M 85
Query: 144 SRRSHEICGQQVAIDSATPLDDA 166
S R H++ G+ V A +D+
Sbjct: 86 SARPHKVDGRVVEPKRAVSREDS 108
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VS 144
KKIFVG + ++ LR YF +G+I + V +D + RGF FVTF + D+ V
Sbjct: 118 KKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV 177
Query: 145 RRSHEICGQQVAIDSA 160
++ H I + A
Sbjct: 178 QKYHTINLHNCEVKKA 193
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 143
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 144 SRRSHEICGQQVAIDSATPLDDA 166
+ R H++ G+ V A +D+
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDS 95
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 79 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 133
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 134 FAEEVVADR-VSRRSHEICGQQVAIDSA 160
F + D+ V ++ H + G + A
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 143
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 144 SRRSHEICGQQVAIDSATPLDDA 166
+ R H++ G+ V A +D+
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDS 95
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 79 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 133
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 134 FAEEVVADR-VSRRSHEICGQQVAIDSA 160
F + D+ V ++ H + G + A
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 143
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 144 SRRSHEICGQQVAIDSATPLDDA 166
+ R H++ G+ V A +D+
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDS 95
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 79 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 133
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 134 FAEEVVADR-VSRRSHEICGQQVAIDSA 160
F + D+ V ++ H + G + A
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVS 144
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A E V ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 145 RRSHEICGQQVAIDSATPLDDA 166
R H++ G+ V A +D+
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS 95
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 79 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 133
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 134 FAEEVVADR-VSRRSHEICGQQVAIDSA 160
F + D+ V ++ H + G + A
Sbjct: 153 FDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 143
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 144 SRRSHEICGQQVAIDSATPLDDA 166
+ R H++ G+ V A +D+
Sbjct: 73 NARPHKVDGRVVEPKRAVSREDS 95
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 79 ESSQRIG-----KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVT 133
E SQR G KKIFVG + ++ LR YF ++G+I + + D RGF FVT
Sbjct: 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152
Query: 134 FAEEVVADR-VSRRSHEICGQQVAIDSA 160
F + D+ V ++ H + G + A
Sbjct: 153 FDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,587,440
Number of Sequences: 539616
Number of extensions: 4226585
Number of successful extensions: 10390
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 9331
Number of HSP's gapped (non-prelim): 1173
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)