Query 027630
Match_columns 221
No_of_seqs 247 out of 2445
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 12:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.3E-27 2.9E-32 202.2 21.9 155 3-166 119-278 (346)
2 KOG0148 Apoptosis-promoting RN 99.9 7.1E-24 1.5E-28 167.5 17.5 147 4-165 75-240 (321)
3 TIGR01645 half-pint poly-U bin 99.9 8E-23 1.7E-27 182.2 16.1 153 3-164 119-285 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.7E-22 3.6E-27 172.6 16.4 153 4-165 102-351 (352)
5 PLN03134 glycine-rich RNA-bind 99.9 2.3E-21 4.9E-26 145.1 16.7 87 80-166 29-117 (144)
6 TIGR01648 hnRNP-R-Q heterogene 99.9 5E-21 1.1E-25 170.4 20.2 149 3-166 150-310 (578)
7 KOG0144 RNA-binding protein CU 99.9 5.8E-22 1.3E-26 165.4 10.4 155 3-167 46-210 (510)
8 KOG0145 RNA-binding protein EL 99.9 1.3E-21 2.8E-26 154.1 9.9 151 4-163 54-209 (360)
9 TIGR01622 SF-CC1 splicing fact 99.9 2.1E-20 4.6E-25 165.0 16.2 150 3-162 101-265 (457)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.2E-20 4.7E-25 159.5 15.1 152 4-164 16-172 (352)
11 TIGR01628 PABP-1234 polyadenyl 99.8 4.7E-20 1E-24 166.6 13.9 151 3-164 190-365 (562)
12 KOG0117 Heterogeneous nuclear 99.8 3.3E-19 7.2E-24 149.6 17.1 148 4-168 177-336 (506)
13 TIGR01628 PABP-1234 polyadenyl 99.8 1E-19 2.2E-24 164.5 14.3 154 3-166 12-170 (562)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1.1E-18 2.4E-23 155.9 14.9 151 3-163 187-375 (509)
15 TIGR01648 hnRNP-R-Q heterogene 99.8 4.1E-18 8.9E-23 151.9 14.7 147 3-164 70-223 (578)
16 KOG0131 Splicing factor 3b, su 99.8 2.5E-18 5.5E-23 128.9 8.9 144 19-167 33-181 (203)
17 KOG4205 RNA-binding protein mu 99.7 4.5E-17 9.7E-22 134.9 13.7 157 3-169 18-182 (311)
18 KOG0149 Predicted RNA-binding 99.7 6.8E-18 1.5E-22 131.4 7.4 80 82-161 9-89 (247)
19 KOG0127 Nucleolar protein fibr 99.7 1.6E-16 3.5E-21 136.4 14.3 153 3-165 17-198 (678)
20 KOG0117 Heterogeneous nuclear 99.7 1.1E-16 2.4E-21 134.5 12.8 149 5-167 97-252 (506)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 2.5E-16 5.4E-21 139.8 14.1 144 4-163 289-480 (481)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 3.3E-16 7.1E-21 139.1 14.8 142 3-163 14-174 (481)
23 KOG0123 Polyadenylate-binding 99.7 2.4E-16 5.1E-21 134.6 13.3 145 4-167 11-157 (369)
24 KOG0124 Polypyrimidine tract-b 99.7 4.4E-16 9.6E-21 128.2 13.2 148 5-161 127-288 (544)
25 TIGR01659 sex-lethal sex-letha 99.7 4.4E-16 9.5E-21 132.1 11.2 83 81-163 103-187 (346)
26 KOG0105 Alternative splicing f 99.7 1.1E-15 2.3E-20 115.2 10.5 77 83-162 4-82 (241)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.6E-15 3.4E-20 135.7 13.7 150 4-162 308-501 (509)
28 KOG0147 Transcriptional coacti 99.6 9.7E-16 2.1E-20 131.9 10.5 153 4-166 192-361 (549)
29 KOG0145 RNA-binding protein EL 99.6 1.3E-14 2.8E-19 114.8 13.9 151 4-163 140-358 (360)
30 KOG0110 RNA-binding protein (R 99.6 1.8E-15 3.9E-20 133.6 9.9 155 3-163 527-693 (725)
31 KOG0107 Alternative splicing f 99.6 1.7E-14 3.7E-19 107.8 13.0 79 83-166 8-88 (195)
32 KOG0122 Translation initiation 99.6 5.8E-15 1.3E-19 115.7 11.0 83 81-163 185-269 (270)
33 KOG0109 RNA-binding protein LA 99.6 2.3E-15 4.9E-20 120.6 8.5 140 3-168 14-155 (346)
34 KOG0111 Cyclophilin-type pepti 99.6 1E-15 2.2E-20 118.3 5.8 85 82-166 7-93 (298)
35 KOG0127 Nucleolar protein fibr 99.6 1.4E-14 3.1E-19 124.7 13.1 80 86-165 293-380 (678)
36 PF00076 RRM_1: RNA recognitio 99.6 5.3E-15 1.2E-19 96.7 8.1 68 88-156 1-70 (70)
37 KOG4207 Predicted splicing fac 99.6 1.7E-14 3.8E-19 110.4 11.8 80 82-161 10-91 (256)
38 KOG0125 Ataxin 2-binding prote 99.6 1E-14 2.3E-19 118.5 9.5 83 79-163 90-174 (376)
39 KOG0146 RNA-binding protein ET 99.6 2.9E-14 6.2E-19 113.2 11.2 85 83-167 283-369 (371)
40 PLN03120 nucleic acid binding 99.5 6.7E-14 1.4E-18 112.4 11.3 77 84-163 3-80 (260)
41 KOG0121 Nuclear cap-binding pr 99.5 2.9E-14 6.2E-19 101.4 7.7 82 82-163 33-116 (153)
42 KOG0148 Apoptosis-promoting RN 99.5 6.7E-14 1.5E-18 111.2 9.3 80 85-164 62-143 (321)
43 KOG0113 U1 small nuclear ribon 99.5 3.3E-13 7.1E-18 108.6 13.2 84 83-166 99-184 (335)
44 PF14259 RRM_6: RNA recognitio 99.5 1E-13 2.2E-18 90.9 8.4 68 88-156 1-70 (70)
45 TIGR01645 half-pint poly-U bin 99.5 1E-13 2.2E-18 124.2 10.1 79 83-161 105-185 (612)
46 TIGR01622 SF-CC1 splicing fact 99.5 7E-13 1.5E-17 117.2 14.0 146 4-162 199-447 (457)
47 PLN03213 repressor of silencin 99.5 2.5E-13 5.4E-18 116.0 9.2 78 82-163 7-88 (759)
48 KOG0126 Predicted RNA-binding 99.4 1.4E-14 3.1E-19 108.8 0.3 79 83-161 33-113 (219)
49 KOG0144 RNA-binding protein CU 99.4 3.2E-13 7E-18 113.5 8.2 87 80-166 29-120 (510)
50 PLN03121 nucleic acid binding 99.4 1.2E-12 2.7E-17 103.6 10.4 75 84-161 4-79 (243)
51 KOG0131 Splicing factor 3b, su 99.4 3.6E-13 7.8E-18 101.3 6.8 83 82-164 6-90 (203)
52 KOG0116 RasGAP SH3 binding pro 99.4 3.1E-12 6.7E-17 110.0 12.7 83 84-166 287-370 (419)
53 KOG0123 Polyadenylate-binding 99.4 1.8E-12 3.9E-17 110.8 10.6 146 4-163 89-246 (369)
54 KOG0130 RNA-binding protein RB 99.4 7.5E-13 1.6E-17 95.0 6.8 82 82-163 69-152 (170)
55 smart00362 RRM_2 RNA recogniti 99.4 3.4E-12 7.4E-17 82.8 9.0 70 87-158 1-72 (72)
56 smart00360 RRM RNA recognition 99.4 4.4E-12 9.5E-17 81.9 8.3 69 90-158 1-71 (71)
57 COG0724 RNA-binding proteins ( 99.4 4.6E-12 1E-16 103.1 9.8 78 85-162 115-194 (306)
58 KOG0108 mRNA cleavage and poly 99.3 3.2E-12 6.9E-17 110.5 8.4 82 86-167 19-102 (435)
59 cd00590 RRM RRM (RNA recogniti 99.3 2.9E-11 6.3E-16 78.7 9.4 72 87-159 1-74 (74)
60 KOG0114 Predicted RNA-binding 99.3 2.2E-11 4.9E-16 83.6 8.5 80 82-164 15-96 (124)
61 KOG4205 RNA-binding protein mu 99.3 4.7E-12 1E-16 105.1 6.0 85 84-168 5-90 (311)
62 KOG4212 RNA-binding protein hn 99.3 6.4E-11 1.4E-15 100.0 11.9 78 84-162 43-123 (608)
63 KOG0109 RNA-binding protein LA 99.3 7.9E-12 1.7E-16 100.5 6.0 71 85-163 2-74 (346)
64 KOG0146 RNA-binding protein ET 99.2 2.8E-11 6.1E-16 96.4 6.7 97 69-166 2-104 (371)
65 KOG0124 Polypyrimidine tract-b 99.2 1.3E-11 2.8E-16 102.1 4.4 77 84-160 112-190 (544)
66 KOG0415 Predicted peptidyl pro 99.2 3.6E-11 7.7E-16 99.1 6.4 82 82-163 236-319 (479)
67 smart00361 RRM_1 RNA recogniti 99.1 2.7E-10 5.9E-15 74.7 7.5 59 99-157 2-69 (70)
68 PF13893 RRM_5: RNA recognitio 99.1 3.7E-10 7.9E-15 70.7 7.2 54 102-160 1-56 (56)
69 KOG4211 Splicing factor hnRNP- 99.1 6.3E-09 1.4E-13 89.3 16.3 146 3-161 22-180 (510)
70 KOG4661 Hsp27-ERE-TATA-binding 99.1 3.6E-10 7.8E-15 98.4 8.2 80 83-162 403-484 (940)
71 KOG0153 Predicted RNA-binding 99.1 8.1E-10 1.8E-14 91.0 8.8 77 81-163 224-303 (377)
72 KOG0110 RNA-binding protein (R 99.0 8.4E-09 1.8E-13 91.9 11.7 76 86-161 516-596 (725)
73 KOG4206 Spliceosomal protein s 99.0 1.7E-08 3.7E-13 78.9 12.0 117 40-161 50-220 (221)
74 KOG4208 Nucleolar RNA-binding 98.9 7.2E-09 1.6E-13 79.8 8.8 84 80-163 44-130 (214)
75 KOG0132 RNA polymerase II C-te 98.9 2.7E-09 5.9E-14 95.8 7.5 77 84-166 420-498 (894)
76 KOG4206 Spliceosomal protein s 98.9 8.5E-09 1.8E-13 80.6 8.2 77 85-164 9-91 (221)
77 KOG0105 Alternative splicing f 98.8 3.6E-07 7.7E-12 69.5 14.0 125 5-148 20-171 (241)
78 KOG0147 Transcriptional coacti 98.8 7.3E-08 1.6E-12 83.9 11.4 144 4-161 291-526 (549)
79 KOG4210 Nuclear localization s 98.7 3.4E-08 7.3E-13 81.8 7.5 127 40-166 128-267 (285)
80 KOG4212 RNA-binding protein hn 98.7 3E-08 6.6E-13 84.1 7.0 74 82-160 533-608 (608)
81 KOG4211 Splicing factor hnRNP- 98.6 1.9E-07 4E-12 80.4 9.2 79 82-163 7-86 (510)
82 KOG0106 Alternative splicing f 98.6 6.8E-08 1.5E-12 76.0 5.9 131 5-160 15-168 (216)
83 KOG0533 RRM motif-containing p 98.6 3.4E-07 7.4E-12 73.6 8.2 81 83-164 81-163 (243)
84 KOG1457 RNA binding protein (c 98.5 7.1E-07 1.5E-11 69.8 9.3 58 86-147 211-268 (284)
85 KOG0106 Alternative splicing f 98.5 1.2E-07 2.6E-12 74.7 5.1 70 86-163 2-73 (216)
86 KOG1548 Transcription elongati 98.5 4.8E-07 1E-11 74.8 8.1 79 82-161 131-219 (382)
87 KOG4209 Splicing factor RNPS1, 98.5 2.3E-07 5E-12 74.6 6.0 84 80-163 96-180 (231)
88 KOG0151 Predicted splicing reg 98.5 5.4E-07 1.2E-11 80.7 7.6 82 80-161 169-255 (877)
89 KOG0226 RNA-binding proteins [ 98.4 2.1E-07 4.6E-12 74.0 4.4 84 81-164 186-271 (290)
90 KOG1995 Conserved Zn-finger pr 98.4 1.4E-06 3.1E-11 72.5 9.1 84 82-165 63-156 (351)
91 KOG1457 RNA binding protein (c 98.4 2.6E-06 5.7E-11 66.7 10.0 87 82-168 31-123 (284)
92 KOG0120 Splicing factor U2AF, 98.4 1.9E-06 4.2E-11 75.6 9.7 150 4-162 302-491 (500)
93 KOG4454 RNA binding protein (R 98.4 1.7E-07 3.7E-12 73.0 2.5 75 82-158 6-82 (267)
94 KOG0120 Splicing factor U2AF, 98.4 1.1E-06 2.3E-11 77.2 7.6 127 40-166 221-372 (500)
95 PF04059 RRM_2: RNA recognitio 98.4 4.1E-06 8.8E-11 58.0 8.6 76 86-161 2-85 (97)
96 KOG4660 Protein Mei2, essentia 98.3 5.7E-07 1.2E-11 78.5 4.1 70 82-156 72-143 (549)
97 KOG4849 mRNA cleavage factor I 98.2 3.2E-06 7E-11 70.1 6.1 74 84-157 79-156 (498)
98 KOG1190 Polypyrimidine tract-b 98.1 5.2E-05 1.1E-09 64.3 12.2 141 4-162 311-490 (492)
99 KOG1190 Polypyrimidine tract-b 98.1 0.0001 2.2E-09 62.6 13.8 74 85-163 297-373 (492)
100 PLN03134 glycine-rich RNA-bind 98.1 4.5E-06 9.7E-11 62.5 5.0 59 3-70 46-104 (144)
101 COG0724 RNA-binding proteins ( 98.1 2.2E-05 4.8E-10 63.5 9.3 111 3-122 127-262 (306)
102 KOG1365 RNA-binding protein Fu 98.0 7.8E-05 1.7E-09 62.8 11.4 150 2-161 172-360 (508)
103 PF11608 Limkain-b1: Limkain b 98.0 2.8E-05 6E-10 51.8 6.9 66 86-161 3-75 (90)
104 KOG0128 RNA-binding protein SA 98.0 5.1E-06 1.1E-10 76.0 4.4 108 40-164 707-816 (881)
105 KOG0112 Large RNA-binding prot 97.9 2.3E-05 5E-10 72.2 6.2 142 5-164 386-532 (975)
106 PF08777 RRM_3: RNA binding mo 97.8 3.1E-05 6.8E-10 54.7 4.5 67 86-158 2-75 (105)
107 KOG1456 Heterogeneous nuclear 97.8 0.0025 5.4E-08 53.8 15.8 140 5-164 45-200 (494)
108 KOG0129 Predicted RNA-binding 97.7 0.00021 4.5E-09 62.4 8.9 65 82-147 256-326 (520)
109 KOG0129 Predicted RNA-binding 97.7 0.00083 1.8E-08 58.8 11.8 66 81-146 366-432 (520)
110 KOG1456 Heterogeneous nuclear 97.7 0.0019 4.1E-08 54.5 13.4 74 83-161 285-361 (494)
111 KOG4207 Predicted splicing fac 97.7 5.7E-05 1.2E-09 58.7 4.2 59 3-70 25-83 (256)
112 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00024 5.3E-09 43.6 5.6 52 86-144 2-53 (53)
113 KOG0149 Predicted RNA-binding 97.5 0.00011 2.3E-09 58.2 3.9 50 4-62 25-74 (247)
114 smart00361 RRM_1 RNA recogniti 97.5 0.00017 3.8E-09 46.9 4.3 59 5-70 2-65 (70)
115 KOG4454 RNA binding protein (R 97.5 7.7E-05 1.7E-09 58.4 2.7 89 44-145 51-143 (267)
116 KOG0111 Cyclophilin-type pepti 97.4 0.00017 3.6E-09 56.6 3.8 63 5-76 24-86 (298)
117 KOG0122 Translation initiation 97.4 0.00022 4.7E-09 56.8 4.5 58 4-70 202-259 (270)
118 KOG0130 RNA-binding protein RB 97.3 0.00024 5.2E-09 51.6 3.1 63 3-74 84-146 (170)
119 PF00076 RRM_1: RNA recognitio 97.3 0.00047 1E-08 44.1 4.1 56 4-69 11-66 (70)
120 KOG1365 RNA-binding protein Fu 97.2 0.0026 5.7E-08 53.9 8.5 120 41-161 99-241 (508)
121 KOG0125 Ataxin 2-binding prote 97.1 0.0005 1.1E-08 57.0 3.6 57 5-72 110-166 (376)
122 KOG4307 RNA binding protein RB 97.1 0.0018 3.9E-08 58.7 7.1 77 82-159 431-510 (944)
123 KOG1855 Predicted RNA-binding 97.1 0.0009 1.9E-08 57.3 4.8 68 80-147 226-306 (484)
124 KOG1548 Transcription elongati 97.1 0.036 7.8E-07 46.5 14.0 150 4-163 147-352 (382)
125 COG5175 MOT2 Transcriptional r 97.0 0.0019 4.2E-08 53.8 6.4 78 84-161 113-201 (480)
126 smart00360 RRM RNA recognition 97.0 0.0021 4.5E-08 40.4 5.2 55 4-67 9-63 (71)
127 KOG2314 Translation initiation 97.0 0.004 8.6E-08 55.3 8.1 76 83-159 56-140 (698)
128 KOG4307 RNA binding protein RB 97.0 0.0029 6.2E-08 57.4 7.3 73 87-159 869-943 (944)
129 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.008 1.7E-07 41.9 7.0 76 85-161 6-90 (100)
130 PLN03213 repressor of silencin 96.7 0.0021 4.5E-08 56.2 4.4 58 3-73 22-81 (759)
131 PF14259 RRM_6: RNA recognitio 96.7 0.0031 6.8E-08 40.5 4.1 54 4-67 11-64 (70)
132 KOG0107 Alternative splicing f 96.6 0.0036 7.8E-08 47.6 4.5 54 3-70 22-75 (195)
133 KOG0128 RNA-binding protein SA 96.6 0.00043 9.3E-09 63.8 -0.8 105 41-145 613-727 (881)
134 KOG0226 RNA-binding proteins [ 96.5 0.0032 6.9E-08 50.6 4.0 59 4-71 203-261 (290)
135 KOG0115 RNA-binding protein p5 96.5 0.0043 9.4E-08 49.9 4.5 61 86-147 32-92 (275)
136 PLN03120 nucleic acid binding 96.4 0.0059 1.3E-07 49.7 4.7 59 3-74 16-74 (260)
137 PF08675 RNA_bind: RNA binding 96.3 0.031 6.8E-07 37.3 6.9 55 84-147 8-62 (87)
138 PF10309 DUF2414: Protein of u 96.3 0.039 8.4E-07 34.9 7.1 55 84-146 4-61 (62)
139 KOG3152 TBP-binding protein, a 96.2 0.0044 9.6E-08 49.8 3.1 70 84-153 73-156 (278)
140 PLN03121 nucleic acid binding 96.2 0.0088 1.9E-07 48.1 4.8 57 3-72 17-73 (243)
141 smart00362 RRM_2 RNA recogniti 96.2 0.011 2.3E-07 37.2 4.5 54 4-68 12-65 (72)
142 PF08952 DUF1866: Domain of un 96.1 0.028 6E-07 41.8 6.8 55 101-163 52-107 (146)
143 KOG2193 IGF-II mRNA-binding pr 96.1 0.0041 8.9E-08 53.4 2.7 76 86-167 2-80 (584)
144 KOG0113 U1 small nuclear ribon 96.0 0.013 2.9E-07 48.1 5.2 59 2-69 112-170 (335)
145 KOG0121 Nuclear cap-binding pr 96.0 0.016 3.5E-07 41.9 4.9 63 3-74 48-110 (153)
146 KOG2193 IGF-II mRNA-binding pr 95.9 0.0015 3.2E-08 56.0 -0.9 119 41-163 36-157 (584)
147 PF13893 RRM_5: RNA recognitio 95.9 0.012 2.6E-07 36.1 3.4 49 8-70 1-49 (56)
148 KOG0108 mRNA cleavage and poly 95.7 0.019 4.1E-07 50.4 5.0 61 3-72 30-90 (435)
149 KOG2416 Acinus (induces apopto 95.6 0.017 3.8E-07 51.6 4.5 75 81-161 440-520 (718)
150 KOG4208 Nucleolar RNA-binding 95.4 0.031 6.8E-07 43.6 4.9 41 40-96 90-130 (214)
151 KOG4676 Splicing factor, argin 95.3 0.03 6.4E-07 47.8 4.7 73 86-158 8-84 (479)
152 KOG2591 c-Mpl binding protein, 94.8 0.097 2.1E-06 46.7 6.7 68 84-158 174-247 (684)
153 KOG0415 Predicted peptidyl pro 94.7 0.031 6.8E-07 47.1 3.2 57 4-69 252-308 (479)
154 cd00590 RRM RRM (RNA recogniti 94.5 0.11 2.4E-06 32.6 5.0 54 4-67 12-65 (74)
155 PF15023 DUF4523: Protein of u 94.5 0.31 6.7E-06 36.1 7.6 74 82-162 83-161 (166)
156 KOG2202 U2 snRNP splicing fact 94.2 0.024 5.1E-07 45.7 1.5 53 108-161 92-146 (260)
157 KOG1996 mRNA splicing factor [ 94.1 0.18 3.9E-06 41.6 6.4 62 99-160 300-364 (378)
158 KOG0126 Predicted RNA-binding 93.7 0.0045 9.7E-08 47.4 -3.3 58 4-70 48-105 (219)
159 KOG0112 Large RNA-binding prot 93.4 0.021 4.5E-07 53.4 -0.2 64 81-145 368-431 (975)
160 PF03467 Smg4_UPF3: Smg-4/UPF3 93.0 0.18 4E-06 38.9 4.5 65 83-147 5-75 (176)
161 KOG2068 MOT2 transcription fac 92.9 0.046 1E-06 45.7 1.2 78 84-161 76-161 (327)
162 KOG2135 Proteins containing th 92.8 0.075 1.6E-06 46.5 2.3 71 86-162 373-445 (526)
163 PRK11634 ATP-dependent RNA hel 92.7 1.1 2.3E-05 41.7 9.9 59 94-161 496-561 (629)
164 KOG0116 RasGAP SH3 binding pro 92.0 0.4 8.8E-06 42.0 5.9 52 1-61 298-349 (419)
165 KOG4661 Hsp27-ERE-TATA-binding 90.8 0.32 7E-06 43.7 4.0 57 5-70 419-475 (940)
166 KOG2253 U1 snRNP complex, subu 90.1 0.23 5.1E-06 45.2 2.6 69 82-159 37-107 (668)
167 PF04847 Calcipressin: Calcipr 89.0 1.5 3.3E-05 34.1 6.1 60 98-163 8-71 (184)
168 KOG4676 Splicing factor, argin 88.0 0.22 4.8E-06 42.7 1.0 58 86-147 152-209 (479)
169 KOG4210 Nuclear localization s 87.7 0.48 1E-05 39.5 2.8 63 83-145 86-148 (285)
170 KOG4209 Splicing factor RNPS1, 86.9 0.75 1.6E-05 37.2 3.4 53 8-70 118-170 (231)
171 KOG4285 Mitotic phosphoprotein 86.2 1.8 3.9E-05 36.0 5.2 65 88-159 200-266 (350)
172 PF03880 DbpA: DbpA RNA bindin 85.9 5.6 0.00012 25.8 6.6 57 95-160 11-74 (74)
173 KOG0132 RNA polymerase II C-te 85.6 1.2 2.6E-05 41.6 4.3 59 4-77 434-492 (894)
174 KOG4574 RNA-binding protein (c 82.8 0.88 1.9E-05 42.8 2.3 73 87-165 300-376 (1007)
175 PF07530 PRE_C2HC: Associated 81.1 4.8 0.0001 25.9 4.7 63 100-163 2-65 (68)
176 smart00596 PRE_C2HC PRE_C2HC d 80.0 4.3 9.3E-05 26.1 4.0 61 100-161 2-63 (69)
177 PF07576 BRAP2: BRCA1-associat 79.3 20 0.00042 25.4 10.5 58 87-146 15-73 (110)
178 KOG0114 Predicted RNA-binding 79.3 5.1 0.00011 28.2 4.5 53 4-68 31-83 (124)
179 KOG4410 5-formyltetrahydrofola 78.4 6.7 0.00015 32.5 5.7 47 85-137 330-377 (396)
180 KOG4660 Protein Mei2, essentia 77.5 5.1 0.00011 36.1 5.1 77 85-161 388-471 (549)
181 PF15513 DUF4651: Domain of un 70.1 13 0.00028 23.4 4.2 18 100-117 9-26 (62)
182 PF14605 Nup35_RRM_2: Nup53/35 69.2 3.9 8.4E-05 24.8 1.8 43 2-59 11-53 (53)
183 KOG4483 Uncharacterized conser 68.7 13 0.00028 32.4 5.3 57 85-148 391-448 (528)
184 PF10567 Nab6_mRNP_bdg: RNA-re 67.9 16 0.00034 30.5 5.5 78 84-161 14-106 (309)
185 PF02714 DUF221: Domain of unk 64.7 8.1 0.00018 32.5 3.5 34 130-163 1-34 (325)
186 PF03468 XS: XS domain; Inter 62.3 10 0.00022 27.1 3.1 55 87-144 10-74 (116)
187 KOG2891 Surface glycoprotein [ 62.0 8.8 0.00019 31.7 3.0 35 84-118 148-194 (445)
188 PF07292 NID: Nmi/IFP 35 domai 61.9 15 0.00032 25.0 3.7 30 130-159 1-33 (88)
189 PF04059 RRM_2: RNA recognitio 60.3 21 0.00045 24.7 4.2 28 40-67 43-70 (97)
190 KOG0533 RRM motif-containing p 59.9 19 0.00042 29.3 4.6 58 4-71 96-153 (243)
191 KOG2202 U2 snRNP splicing fact 59.3 5.2 0.00011 32.6 1.3 31 40-70 108-138 (260)
192 PF11767 SET_assoc: Histone ly 57.3 48 0.001 21.1 6.1 51 96-155 11-63 (66)
193 KOG0804 Cytoplasmic Zn-finger 51.3 1.2E+02 0.0025 27.2 8.2 61 85-147 74-135 (493)
194 KOG0151 Predicted splicing reg 46.3 35 0.00076 32.1 4.5 62 5-72 188-249 (877)
195 PRK14548 50S ribosomal protein 46.2 89 0.0019 20.9 5.6 56 87-145 22-79 (84)
196 KOG2314 Translation initiation 45.4 42 0.0009 30.8 4.7 31 40-70 103-133 (698)
197 TIGR03636 L23_arch archaeal ri 44.7 89 0.0019 20.5 5.5 55 87-144 15-71 (77)
198 COG5175 MOT2 Transcriptional r 44.2 49 0.0011 28.3 4.7 55 10-71 139-194 (480)
199 COG4907 Predicted membrane pro 42.7 26 0.00056 31.2 3.0 7 112-118 506-512 (595)
200 KOG3262 H/ACA small nucleolar 41.6 47 0.001 25.8 3.9 8 108-115 97-104 (215)
201 KOG4008 rRNA processing protei 37.3 32 0.00069 27.8 2.5 34 82-115 37-70 (261)
202 PF09707 Cas_Cas2CT1978: CRISP 34.7 85 0.0018 21.2 4.0 48 85-135 25-72 (86)
203 COG1512 Beta-propeller domains 29.4 82 0.0018 26.2 3.8 9 92-100 119-127 (271)
204 KOG4365 Uncharacterized conser 29.3 11 0.00023 33.3 -1.4 75 86-161 4-80 (572)
205 COG2098 Uncharacterized protei 29.1 89 0.0019 22.1 3.4 30 2-31 36-69 (116)
206 KOG0153 Predicted RNA-binding 27.9 77 0.0017 27.2 3.4 45 5-64 242-286 (377)
207 PF03439 Spt5-NGN: Early trans 27.6 1.2E+02 0.0026 20.1 3.8 34 111-149 33-66 (84)
208 COG0217 Uncharacterized conser 27.3 3.4E+02 0.0075 22.1 7.0 38 83-120 92-135 (241)
209 PF03108 DBD_Tnp_Mut: MuDR fam 27.1 75 0.0016 19.8 2.6 30 132-161 8-37 (67)
210 PRK10590 ATP-dependent RNA hel 27.0 4.2E+02 0.0092 23.4 8.3 7 127-133 342-348 (456)
211 PF11411 DNA_ligase_IV: DNA li 26.9 51 0.0011 18.3 1.5 16 95-110 19-34 (36)
212 KOG4019 Calcineurin-mediated s 26.4 75 0.0016 24.7 2.8 72 86-163 11-90 (193)
213 KOG2295 C2H2 Zn-finger protein 25.3 9.3 0.0002 34.6 -2.5 63 83-145 229-291 (648)
214 PRK11558 putative ssRNA endonu 23.3 1.5E+02 0.0032 20.5 3.6 49 85-136 27-75 (97)
215 PF04026 SpoVG: SpoVG; InterP 23.0 1.7E+02 0.0036 19.6 3.8 26 111-136 2-27 (84)
216 PHA01632 hypothetical protein 22.5 95 0.002 19.1 2.2 21 88-108 19-39 (64)
217 COG0445 GidA Flavin-dependent 21.7 4.5E+02 0.0097 24.5 7.2 78 42-119 236-335 (621)
218 COG5193 LHP1 La protein, small 21.0 46 0.001 29.1 0.9 62 84-145 173-244 (438)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=1.3e-27 Score=202.21 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=133.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCC-CC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGE-SS 81 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~-~~ 81 (221)
.++++|+++|++++.|..++|..+..+. ++++||||.|.+.++|+.|+..|++..+.+.++....... ..
T Consensus 119 ~te~~L~~lF~~~G~V~~v~i~~d~~tg---------~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~ 189 (346)
T TIGR01659 119 MTDRELYALFRTIGPINTCRIMRDYKTG---------YSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGE 189 (346)
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCC---------ccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccc
Confidence 4689999999999999888888877666 7889999999999999999999999988888876554322 22
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCC--eEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g--~~l~V 157 (221)
....++|||+|||+.+++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.++ .|.+ +.|.|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999998665 4444 78999
Q ss_pred EecCCCCCC
Q 027630 158 DSATPLDDA 166 (221)
Q Consensus 158 ~~a~~~~~~ 166 (221)
.+++.+...
T Consensus 270 ~~a~~~~~~ 278 (346)
T TIGR01659 270 RLAEEHGKA 278 (346)
T ss_pred EECCccccc
Confidence 999876543
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=7.1e-24 Score=167.45 Aligned_cols=147 Identities=23% Similarity=0.286 Sum_probs=128.6
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCC----
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGE---- 79 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~---- 79 (221)
+.|.|+++|..+++|.+.+|+++-++. +|+|||||.|-...+|++|++.||+.=|-...++..++..
T Consensus 75 ~~e~lr~aF~pFGevS~akvirD~~T~---------KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e 145 (321)
T KOG0148|consen 75 DNEKLREAFAPFGEVSDAKVIRDMNTG---------KSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSE 145 (321)
T ss_pred chHHHHHHhccccccccceEeecccCC---------cccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccc
Confidence 467899999999999999999999988 8999999999999999999999988766666655544422
Q ss_pred -------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh
Q 027630 80 -------------SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146 (221)
Q Consensus 80 -------------~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ 146 (221)
.+..+.++|||+||+.-++|++|++.|++||.|.+|++.++ +||+||.|++.|.|..||..
T Consensus 146 ~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~ 219 (321)
T KOG0148|consen 146 MNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQ 219 (321)
T ss_pred cCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHH
Confidence 23567899999999999999999999999999999999886 67999999999999999976
Q ss_pred CC--ccCCeEEEEEecCCCCC
Q 027630 147 SH--EICGQQVAIDSATPLDD 165 (221)
Q Consensus 147 ~~--~i~g~~l~V~~a~~~~~ 165 (221)
++ +|.|+.+++.|-+....
T Consensus 220 mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 220 MNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred hcCceeCceEEEEeccccCCC
Confidence 54 99999999999886543
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.90 E-value=8e-23 Score=182.17 Aligned_cols=153 Identities=14% Similarity=0.262 Sum_probs=131.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCC----
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG---- 78 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~---- 78 (221)
.++++|+++|..++.|....|..++.+. +++|||||.|.+.++|..|+..+++..+.+.+.......
T Consensus 119 ~tEe~Lr~lF~~fG~I~sV~I~~D~~Tg---------kskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~ 189 (612)
T TIGR01645 119 LREDTIRRAFDPFGPIKSINMSWDPATG---------KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ 189 (612)
T ss_pred CCHHHHHHHHHccCCEEEEEEeecCCCC---------CcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccc
Confidence 4789999999999999888888887776 789999999999999999999998877766654332111
Q ss_pred --------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--
Q 027630 79 --------ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-- 148 (221)
Q Consensus 79 --------~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-- 148 (221)
.......++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+||..++
T Consensus 190 a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~ 269 (612)
T TIGR01645 190 AQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLF 269 (612)
T ss_pred cccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCC
Confidence 0112245799999999999999999999999999999999999999999999999999999999998665
Q ss_pred ccCCeEEEEEecCCCC
Q 027630 149 EICGQQVAIDSATPLD 164 (221)
Q Consensus 149 ~i~g~~l~V~~a~~~~ 164 (221)
+|+|+.|+|.++.+..
T Consensus 270 elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 270 DLGGQYLRVGKCVTPP 285 (612)
T ss_pred eeCCeEEEEEecCCCc
Confidence 8899999999998654
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.90 E-value=1.7e-22 Score=172.57 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=123.6
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC--C-------CC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP--G-------SF 74 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~--~-------~~ 74 (221)
++++|..+|+.++.|....+..+..+. .+++||||.|.+.++|+.|+..|++..+.+.. . ..
T Consensus 102 ~~~~l~~~f~~~G~i~~~~~~~~~~~~---------~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 102 TQHELESIFSPFGQIITSRILSDNVTG---------LSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CHHHHHHHHhccCCEEEEEEEecCCCC---------CcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 578899999999988777777665544 67899999999999999999998765443311 0 00
Q ss_pred ------------------CCC-----------------------------------------------------------
Q 027630 75 ------------------YGR----------------------------------------------------------- 77 (221)
Q Consensus 75 ------------------~~~----------------------------------------------------------- 77 (221)
...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (352)
T TIGR01661 173 SSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQ 252 (352)
T ss_pred cCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcccccc
Confidence 000
Q ss_pred ---------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC
Q 027630 78 ---------GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 148 (221)
Q Consensus 78 ---------~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~ 148 (221)
.......+.+|||+|||+++++++|+++|++||.|.+|+|+.|+.|+.++|||||+|.+.++|.+||..++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ln 332 (352)
T TIGR01661 253 TAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLN 332 (352)
T ss_pred ccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhC
Confidence 00001123369999999999999999999999999999999999999999999999999999999998665
Q ss_pred --ccCCeEEEEEecCCCCC
Q 027630 149 --EICGQQVAIDSATPLDD 165 (221)
Q Consensus 149 --~i~g~~l~V~~a~~~~~ 165 (221)
.|.|+.|+|.++.++..
T Consensus 333 G~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 333 GYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCEECCeEEEEEEccCCCC
Confidence 89999999999998764
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.88 E-value=2.3e-21 Score=145.12 Aligned_cols=87 Identities=30% Similarity=0.509 Sum_probs=79.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAI 157 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V 157 (221)
......++|||+|||++++|++|+++|++||.|.+|.|+.|+.|++++|||||+|.+.++|++||+.+ +.|+++.|+|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999755 4899999999
Q ss_pred EecCCCCCC
Q 027630 158 DSATPLDDA 166 (221)
Q Consensus 158 ~~a~~~~~~ 166 (221)
+++.++...
T Consensus 109 ~~a~~~~~~ 117 (144)
T PLN03134 109 NPANDRPSA 117 (144)
T ss_pred EeCCcCCCC
Confidence 999876553
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.88 E-value=5e-21 Score=170.38 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=107.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhC--CCCcCCCCCCCCCC---
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG--APTLYDHPGSFYGR--- 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~--~~~~~~~~~~~~~~--- 77 (221)
.++++|.+.|++..+..-..|+... +.+ ..++++||||.|.++.+|+.|+..+. ...+.+......+.
T Consensus 150 ~TeeeL~eeFskv~egvv~vIv~~~--~~~-----kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~ 222 (578)
T TIGR01648 150 KKREEILEEFSKVTEGVVDVIVYHS--AAD-----KKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPE 222 (578)
T ss_pred hhhHHHHHHhhcccCCceEEEEecc--ccc-----cCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccc
Confidence 3566777777764432111222221 111 12678999999999999999998763 23344444332222
Q ss_pred ---CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc
Q 027630 78 ---GESSQRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 150 (221)
Q Consensus 78 ---~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i 150 (221)
++......++|||+||++++++++|+++|++| |.|+.|.+++ +||||+|.+.++|++||+.++ +|
T Consensus 223 ~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i 294 (578)
T TIGR01648 223 EEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKEL 294 (578)
T ss_pred ccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEE
Confidence 12223346789999999999999999999999 9999998754 499999999999999997654 89
Q ss_pred CCeEEEEEecCCCCCC
Q 027630 151 CGQQVAIDSATPLDDA 166 (221)
Q Consensus 151 ~g~~l~V~~a~~~~~~ 166 (221)
.|+.|+|.+++|....
T Consensus 295 ~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 295 EGSEIEVTLAKPVDKK 310 (578)
T ss_pred CCEEEEEEEccCCCcc
Confidence 9999999999986544
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=5.8e-22 Score=165.39 Aligned_cols=155 Identities=25% Similarity=0.370 Sum_probs=131.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCC-CCcCC--CCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA-PTLYD--HPGSFYGRGE 79 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~-~~~~~--~~~~~~~~~~ 79 (221)
.+|.+++.+|++++.+....|..++.+. .++++|||.|.+..+|..|++++.. .++.+ +|..+...+.
T Consensus 46 ~sE~dlr~lFe~yg~V~einl~kDk~t~---------~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 46 ASEKDLRELFEKYGNVYEINLIKDKSTG---------QSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADG 116 (510)
T ss_pred ccHHHHHHHHHHhCceeEEEeecccccC---------cccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccch
Confidence 4689999999999999988888888887 7899999999999999999999754 44433 5555555554
Q ss_pred CCCC--CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC---cc--CC
Q 027630 80 SSQR--IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EI--CG 152 (221)
Q Consensus 80 ~~~~--~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~---~i--~g 152 (221)
+.+. ..++|||+.|+..++|.+++++|++||.|++|.|++| ..+.+||||||.|.+.+.|..||+.+| .+ +.
T Consensus 117 E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs 195 (510)
T KOG0144|consen 117 ERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCS 195 (510)
T ss_pred hhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCC
Confidence 4333 3789999999999999999999999999999999999 558899999999999999999998776 34 56
Q ss_pred eEEEEEecCCCCCCC
Q 027630 153 QQVAIDSATPLDDAG 167 (221)
Q Consensus 153 ~~l~V~~a~~~~~~~ 167 (221)
.+|.|+||++++++.
T Consensus 196 ~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 196 QPLVVKFADTQKDKD 210 (510)
T ss_pred CceEEEecccCCCch
Confidence 789999999887764
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.3e-21 Score=154.10 Aligned_cols=151 Identities=23% Similarity=0.353 Sum_probs=136.2
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC-CCCCCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF-YGRGESSQ 82 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (221)
++|+++.+|...++|+.+++++++.++ +|-|||||.|..+.+|+.|++.+|+..|....+.+ +.+.+...
T Consensus 54 TqdE~rSLF~SiGeiEScKLvRDKitG---------qSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~ 124 (360)
T KOG0145|consen 54 TQDELRSLFGSIGEIESCKLVRDKITG---------QSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDS 124 (360)
T ss_pred CHHHHHHHhhcccceeeeeeeeccccc---------cccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhh
Confidence 578999999999999999999999888 89999999999999999999999999999888644 55566667
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC----ccCCeEEEEE
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAID 158 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~l~V~ 158 (221)
....+|||.+||..+|..+|+++|++||.|..-+|+.|..|+.++|.+||.|+..++|+.||..++ .-+-.+|.|+
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 788999999999999999999999999999999999999999999999999999999999998554 3355689999
Q ss_pred ecCCC
Q 027630 159 SATPL 163 (221)
Q Consensus 159 ~a~~~ 163 (221)
+|...
T Consensus 205 FannP 209 (360)
T KOG0145|consen 205 FANNP 209 (360)
T ss_pred ecCCc
Confidence 99744
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.85 E-value=2.1e-20 Score=164.95 Aligned_cols=150 Identities=22% Similarity=0.342 Sum_probs=124.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC-----
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR----- 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~----- 77 (221)
.++++|.++|.+++.|....|..++.+. ++++||||.|.+.++|.+|+. +++..+.+.+......
T Consensus 101 ~~~~~l~~~F~~~G~v~~v~i~~d~~~~---------~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~ 170 (457)
T TIGR01622 101 ARERDLYEFFSKVGKVRDVQCIKDRNSR---------RSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKN 170 (457)
T ss_pred CCHHHHHHHHHhcCCeeEEEEeecCCCC---------CcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhh
Confidence 3678899999999999888888776665 788999999999999999997 5666666655322111
Q ss_pred --------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-
Q 027630 78 --------GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH- 148 (221)
Q Consensus 78 --------~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~- 148 (221)
.........+|||+|||..+++++|+++|++||.|..|.|+.+..+++++|||||+|.+.++|.+|+..++
T Consensus 171 ~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g 250 (457)
T TIGR01622 171 RAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG 250 (457)
T ss_pred hhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC
Confidence 01112236899999999999999999999999999999999999999999999999999999999997655
Q ss_pred -ccCCeEEEEEecCC
Q 027630 149 -EICGQQVAIDSATP 162 (221)
Q Consensus 149 -~i~g~~l~V~~a~~ 162 (221)
.|.|+.|.|.++..
T Consensus 251 ~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 251 FELAGRPIKVGYAQD 265 (457)
T ss_pred cEECCEEEEEEEccC
Confidence 88999999999873
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.85 E-value=2.2e-20 Score=159.55 Aligned_cols=152 Identities=22% Similarity=0.314 Sum_probs=129.7
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCC-CCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGE-SSQ 82 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~-~~~ 82 (221)
++++|.++|++++.|...+|..++.+. +++|||||.|.+.++|..|+..+++..+.+.+.......+ ...
T Consensus 16 ~e~~l~~~F~~~G~i~~v~i~~d~~~g---------~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~ 86 (352)
T TIGR01661 16 TQEEIRSLFTSIGEIESCKLVRDKVTG---------QSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDS 86 (352)
T ss_pred CHHHHHHHHHccCCEEEEEEEEcCCCC---------ccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccc
Confidence 689999999999999988888887665 7889999999999999999999999888887764433222 223
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCC--eEEEEE
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAID 158 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g--~~l~V~ 158 (221)
....+|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|++||..++ .+.+ .+|.|.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 456799999999999999999999999999999999998889999999999999999999997655 4444 678999
Q ss_pred ecCCCC
Q 027630 159 SATPLD 164 (221)
Q Consensus 159 ~a~~~~ 164 (221)
++....
T Consensus 167 ~a~~~~ 172 (352)
T TIGR01661 167 FANNPS 172 (352)
T ss_pred ECCCCC
Confidence 987554
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.83 E-value=4.7e-20 Score=166.63 Aligned_cols=151 Identities=22% Similarity=0.300 Sum_probs=123.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcC----CCCCCCCCC-
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY----DHPGSFYGR- 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~----~~~~~~~~~- 77 (221)
.++++|.++|..+++|....|..+. .. ++++||||.|.+.++|..|+..+++..+. +........
T Consensus 190 ~tee~L~~~F~~fG~i~~~~i~~~~-~g---------~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~ 259 (562)
T TIGR01628 190 VNEDKLRELFAKFGEITSAAVMKDG-SG---------RSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQ 259 (562)
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECC-CC---------CcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeeccc
Confidence 4688999999999988766655442 22 67899999999999999999999887765 332211110
Q ss_pred ------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHH
Q 027630 78 ------------------GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 139 (221)
Q Consensus 78 ------------------~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~ 139 (221)
.........+|||+||++++++++|+++|++||.|.+|+++.+ .++.++|||||+|.+.++
T Consensus 260 ~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~ 338 (562)
T TIGR01628 260 KRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEE 338 (562)
T ss_pred ChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHH
Confidence 0111345678999999999999999999999999999999999 789999999999999999
Q ss_pred HHHHHhhCC--ccCCeEEEEEecCCCC
Q 027630 140 ADRVSRRSH--EICGQQVAIDSATPLD 164 (221)
Q Consensus 140 a~~al~~~~--~i~g~~l~V~~a~~~~ 164 (221)
|++|+..++ .|.|+.|.|.+|.+++
T Consensus 339 A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 339 ANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 999998655 8899999999998765
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3.3e-19 Score=149.60 Aligned_cols=148 Identities=21% Similarity=0.322 Sum_probs=116.7
Q ss_pred ChHHHHHHhcccc--cccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHh--CCCCcCCCCCCCCCCCC
Q 027630 4 DQDSVENLMVDTH--ELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL--GAPTLYDHPGSFYGRGE 79 (221)
Q Consensus 4 ~~~~~~~~~~~~~--~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~--~~~~~~~~~~~~~~~~~ 79 (221)
+.|++.+.|++.. .++ +|+.+.+.. .-+++||+||+|+++..|+-|...| +...++++...+.|+++
T Consensus 177 ~keeIlee~~kVteGVvd--Vivy~~p~d-------k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep 247 (506)
T KOG0117|consen 177 KKEEILEEMKKVTEGVVD--VIVYPSPDD-------KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEP 247 (506)
T ss_pred cHHHHHHHHHhhCCCeeE--EEEecCccc-------cccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCc
Confidence 4677777777533 222 233332222 1278999999999999998888776 56778888777766654
Q ss_pred C------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccC
Q 027630 80 S------SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 151 (221)
Q Consensus 80 ~------~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~ 151 (221)
. .....+.|||+||+.++||+.|+++|++||.|+.|+.++| ||||.|.+.++|.+|+++++ +|+
T Consensus 248 ~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 248 EEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred ccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceec
Confidence 3 3446788999999999999999999999999999998866 99999999999999998665 999
Q ss_pred CeEEEEEecCCCCCCCC
Q 027630 152 GQQVAIDSATPLDDAGP 168 (221)
Q Consensus 152 g~~l~V~~a~~~~~~~~ 168 (221)
|..|.|.+|+|..++..
T Consensus 320 G~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 320 GSPIEVTLAKPVDKKKK 336 (506)
T ss_pred CceEEEEecCChhhhcc
Confidence 99999999999766543
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.83 E-value=1e-19 Score=164.47 Aligned_cols=154 Identities=21% Similarity=0.252 Sum_probs=130.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCC--
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGES-- 80 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~-- 80 (221)
-++++|.++|++++.|...+|.++..+. ++++||||.|.+.++|++|+..++...+.+.++...+...+
T Consensus 12 vte~~L~~~F~~~G~v~~v~v~~d~~t~---------~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~ 82 (562)
T TIGR01628 12 VTEAKLYDLFKPFGPVLSVRVCRDSVTR---------RSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPS 82 (562)
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCC---------CcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccc
Confidence 4689999999999998888887777666 78899999999999999999999998888888665543221
Q ss_pred -CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 81 -SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 81 -~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
......+|||+|||.++++++|+++|++||.|.+|+|+.+ .+++++|||||+|.+.++|++|++.++ .+.++.|.|
T Consensus 83 ~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 83 LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 1223568999999999999999999999999999999988 578899999999999999999998655 788999999
Q ss_pred EecCCCCCC
Q 027630 158 DSATPLDDA 166 (221)
Q Consensus 158 ~~a~~~~~~ 166 (221)
....++..+
T Consensus 162 ~~~~~~~~~ 170 (562)
T TIGR01628 162 GRFIKKHER 170 (562)
T ss_pred ecccccccc
Confidence 877665444
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.80 E-value=1.1e-18 Score=155.95 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=112.8
Q ss_pred CChHHHHHHhcccccccCc------eEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC-
Q 027630 3 KDQDSVENLMVDTHELGGS------TVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY- 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~------~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~- 75 (221)
.++++|..+|.++....+. .+++...+. +.++||||+|.+.++|..|++ |++..+.+.+....
T Consensus 187 ~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---------~~kg~afVeF~~~e~A~~Al~-l~g~~~~g~~l~v~r 256 (509)
T TIGR01642 187 FVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---------KEKNFAFLEFRTVEEATFAMA-LDSIIYSNVFLKIRR 256 (509)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---------CCCCEEEEEeCCHHHHhhhhc-CCCeEeeCceeEecC
Confidence 3678888888864322221 111111122 457999999999999999995 66655544332110
Q ss_pred ----C-C------------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCc
Q 027630 76 ----G-R------------------------GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH 126 (221)
Q Consensus 76 ----~-~------------------------~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~ 126 (221)
. . .........+|||+|||..+++++|+++|+.||.|..+.|+.+..++.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~ 336 (509)
T TIGR01642 257 PHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLS 336 (509)
T ss_pred ccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCc
Confidence 0 0 0001234579999999999999999999999999999999999999999
Q ss_pred ceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCC
Q 027630 127 RGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 163 (221)
Q Consensus 127 ~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~ 163 (221)
+|||||+|.+.++|..||..++ .|.++.|.|.++...
T Consensus 337 ~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 337 KGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999999999999999997654 889999999998654
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.78 E-value=4.1e-18 Score=151.86 Aligned_cols=147 Identities=18% Similarity=0.271 Sum_probs=116.5
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcC-CCCCCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY-DHPGSFYGRGESS 81 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~-~~~~~~~~~~~~~ 81 (221)
-++++|.++|++++.|...+|..+ .+. ++++||||.|.+.++|+.|+..|++..+. +.......
T Consensus 70 ~tEd~L~~~F~~~G~I~~vrl~~D-~sG---------~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~----- 134 (578)
T TIGR01648 70 LYEDELVPLFEKAGPIYELRLMMD-FSG---------QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI----- 134 (578)
T ss_pred CCHHHHHHHHHhhCCEEEEEEEEC-CCC---------CccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc-----
Confidence 368999999999999888888777 444 78999999999999999999999886653 22222211
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEe-ecCCCCCCcceEEEEEEcCHHHHHHHHhhCC----ccCCeEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYV-PKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQV 155 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~-~~~~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~l 155 (221)
....++|||+|||+++++++|.++|++++. ++++.+ .....+++++|||||+|.++++|..|+..++ .+.++.|
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 234689999999999999999999999863 444433 3334556789999999999999999987543 5789999
Q ss_pred EEEecCCCC
Q 027630 156 AIDSATPLD 164 (221)
Q Consensus 156 ~V~~a~~~~ 164 (221)
.|.++.+..
T Consensus 215 ~VdwA~p~~ 223 (578)
T TIGR01648 215 AVDWAEPEE 223 (578)
T ss_pred EEEeecccc
Confidence 999998754
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.76 E-value=2.5e-18 Score=128.92 Aligned_cols=144 Identities=23% Similarity=0.410 Sum_probs=118.3
Q ss_pred cCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCC--CCCCCCCeEEEcCCCCC
Q 027630 19 GGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGE--SSQRIGKKIFVGRLPQE 96 (221)
Q Consensus 19 ~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~V~nLp~~ 96 (221)
.|.+|.+. .|++.... .-+||||++|.+.++|+=|+..||...|++.|+++...+. .....+.+|||+||.++
T Consensus 33 agpVv~i~--iPkDrv~~---~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~ 107 (203)
T KOG0131|consen 33 AGPVVNLH--IPKDRVTQ---KHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPE 107 (203)
T ss_pred cCceeeee--cchhhhcc---cccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcc
Confidence 34455544 44433322 4579999999999999999999999999999987766552 23445689999999999
Q ss_pred CCHHHHHHHhhccCCeEE-EEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCCCCCC
Q 027630 97 ATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDDAG 167 (221)
Q Consensus 97 ~te~~l~~~F~~~G~i~~-v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~~~~~ 167 (221)
++|..|.+.|+.||.|.. -+++++..|+.+++|+||.|.+.+.+.+||..++ .++.++|.|.++..+....
T Consensus 108 vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 108 VDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 999999999999998765 4899999999999999999999999999997554 7899999999998765543
No 17
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.74 E-value=4.5e-17 Score=134.88 Aligned_cols=157 Identities=29% Similarity=0.460 Sum_probs=128.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC---CCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD---HPGSFYGRGE 79 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~---~~~~~~~~~~ 79 (221)
.++|.|+.-|..++++..+.|..++++. ++++|+||.|.+.+...+++..-.- .+.+ .|.+..++..
T Consensus 18 ttee~Lr~yf~~~Gev~d~~vm~d~~t~---------rsrgFgfv~f~~~~~v~~vl~~~~h-~~dgr~ve~k~av~r~~ 87 (311)
T KOG4205|consen 18 TTEESLREYFSQFGEVTDCVVMRDPSTG---------RSRGFGFVTFATPEGVDAVLNARTH-KLDGRSVEPKRAVSRED 87 (311)
T ss_pred ccHHHHHHHhcccCceeeEEEeccCCCC---------CcccccceecCCCcchheeeccccc-ccCCccccceeccCccc
Confidence 4688899999999999999999999987 8899999999999888777666211 1111 1112222222
Q ss_pred C----CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeE
Q 027630 80 S----SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQ 154 (221)
Q Consensus 80 ~----~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~ 154 (221)
. ......+|||++||..+++++|++.|.+||.|..+.++.|..+.++++|+||+|.+++++++++. ..|+|+++.
T Consensus 88 ~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~ 167 (311)
T KOG4205|consen 88 QTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKK 167 (311)
T ss_pred ccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCce
Confidence 1 12246799999999999999999999999999999999999999999999999999999999985 668999999
Q ss_pred EEEEecCCCCCCCCC
Q 027630 155 VAIDSATPLDDAGPS 169 (221)
Q Consensus 155 l~V~~a~~~~~~~~~ 169 (221)
+.|+.|.|++...+.
T Consensus 168 vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 168 VEVKRAIPKEVMQST 182 (311)
T ss_pred eeEeeccchhhcccc
Confidence 999999999876653
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=6.8e-18 Score=131.43 Aligned_cols=80 Identities=36% Similarity=0.603 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-ccCCeEEEEEec
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSA 160 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~l~V~~a 160 (221)
+-+-++|||++|+|++..+.|+++|++||+|++..|+.|+.|+++|||+||+|.+.++|.+||++.+ .|+||+..|++|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 3456899999999999999999999999999999999999999999999999999999999999887 899999999987
Q ss_pred C
Q 027630 161 T 161 (221)
Q Consensus 161 ~ 161 (221)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 5
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.6e-16 Score=136.44 Aligned_cols=153 Identities=19% Similarity=0.300 Sum_probs=121.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC-------
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY------- 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~------- 75 (221)
.+.+.+...|+..+-|-.+.|+...-.. +++|||||.|.-.++++.|++......+.+.-+...
T Consensus 17 ~~~~qL~e~FS~vGPik~~~vVt~~gs~---------~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r 87 (678)
T KOG0127|consen 17 STGEQLEEFFSYVGPIKHAVVVTNKGSS---------EKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRAR 87 (678)
T ss_pred cchhHHHHhhhcccCcceeEEecCCCcc---------cccCccceeeehHhHHHHHHHHhhcCcccceeccccccccccc
Confidence 4567889999998888888888776555 788999999999999999999975543333221000
Q ss_pred -C------------CCCC-----C--CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEc
Q 027630 76 -G------------RGES-----S--QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 135 (221)
Q Consensus 76 -~------------~~~~-----~--~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~ 135 (221)
. .-.. . ..+..+|.|+||||.+.+.+|+.+|+.||.|.+|.|++.+... -+|||||+|.
T Consensus 88 ~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk-lcGFaFV~fk 166 (678)
T KOG0127|consen 88 SEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK-LCGFAFVQFK 166 (678)
T ss_pred chhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC-ccceEEEEEe
Confidence 0 0000 1 2236799999999999999999999999999999999775544 5599999999
Q ss_pred CHHHHHHHHhh--CCccCCeEEEEEecCCCCC
Q 027630 136 EEVVADRVSRR--SHEICGQQVAIDSATPLDD 165 (221)
Q Consensus 136 ~~~~a~~al~~--~~~i~g~~l~V~~a~~~~~ 165 (221)
...+|..||+. +++|.|++|-|.||.++..
T Consensus 167 ~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 167 EKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 99999999984 5599999999999987753
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.1e-16 Score=134.55 Aligned_cols=149 Identities=17% Similarity=0.293 Sum_probs=121.1
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCc-CCCCCCCCCCCCCCCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL-YDHPGSFYGRGESSQR 83 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 83 (221)
+++|.-+|++.++|-.-+|..++... .++||+||.|.+.+.|+.|+..+|.... .+..+... ...
T Consensus 97 EdeLvplfEkiG~I~elRLMmD~~sG---------~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc-----~Sv 162 (506)
T KOG0117|consen 97 EDELVPLFEKIGKIYELRLMMDPFSG---------DNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC-----VSV 162 (506)
T ss_pred chhhHHHHHhccceeeEEEeecccCC---------CCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE-----Eee
Confidence 78899999999999888888887766 7899999999999999999999987533 22222221 245
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeecCCC-CCCcceEEEEEEcCHHHHHHHHhhCC----ccCCeEEEE
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKDPK-RTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAI 157 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~~~~~-tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~l~V 157 (221)
..++|||+|||.+.++++|.+.|++.++ |++|.|...+. ..++||||||+|.++..|..|-.++. .+.|..+.|
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 6799999999999999999999999884 66776665543 45689999999999999888865442 789999999
Q ss_pred EecCCCCCCC
Q 027630 158 DSATPLDDAG 167 (221)
Q Consensus 158 ~~a~~~~~~~ 167 (221)
.||.|+.+..
T Consensus 243 dWAep~~e~d 252 (506)
T KOG0117|consen 243 DWAEPEEEPD 252 (506)
T ss_pred eccCcccCCC
Confidence 9999886543
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.70 E-value=2.5e-16 Score=139.85 Aligned_cols=144 Identities=12% Similarity=0.126 Sum_probs=112.3
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC------
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR------ 77 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~------ 77 (221)
++++|.++|+.++.|...+|..+ .+++|||.|.+..+|..|+..|++..+.+.+......
T Consensus 289 t~~~L~~lF~~yG~V~~vki~~~--------------~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~ 354 (481)
T TIGR01649 289 NCDRLFNLFCVYGNVERVKFMKN--------------KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQ 354 (481)
T ss_pred CHHHHHHHHHhcCCeEEEEEEeC--------------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccccc
Confidence 68999999999998876555443 1489999999999999999999887777755311100
Q ss_pred ---C--------------C--------C-------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC--eEEEEeecCCCC
Q 027630 78 ---G--------------E--------S-------SQRIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKDPKR 123 (221)
Q Consensus 78 ---~--------------~--------~-------~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~~~~~~~t 123 (221)
. . . -..+..+|||+|||+++++++|+++|+.||. |..|++.... +
T Consensus 355 ~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~ 433 (481)
T TIGR01649 355 PPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N 433 (481)
T ss_pred CCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C
Confidence 0 0 0 0124568999999999999999999999997 8888876543 2
Q ss_pred CCcceEEEEEEcCHHHHHHHHhhCC--ccCCeE------EEEEecCCC
Q 027630 124 TGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ------VAIDSATPL 163 (221)
Q Consensus 124 g~~~g~afV~f~~~~~a~~al~~~~--~i~g~~------l~V~~a~~~ 163 (221)
+ .+++|||+|.+.++|.+||..++ .|.++. |+|.+++++
T Consensus 434 ~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 434 E-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred C-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3 57899999999999999998654 788774 999998765
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.70 E-value=3.3e-16 Score=139.07 Aligned_cols=142 Identities=12% Similarity=0.086 Sum_probs=108.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHh--CCCCcCCCCCCCCCC---
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL--GAPTLYDHPGSFYGR--- 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~--~~~~~~~~~~~~~~~--- 77 (221)
.++++|.++|+.++.|....|.. +++||||+|.+.++|.+|++.+ +...+.+.+.....+
T Consensus 14 ~te~~L~~~f~~fG~V~~v~i~~---------------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 14 VVEADLVEALIPFGPVSYVMMLP---------------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CCHHHHHHHHHhcCCeeEEEEEC---------------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 36899999999999887665541 2479999999999999999874 445555555322111
Q ss_pred ----C------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC
Q 027630 78 ----G------ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 147 (221)
Q Consensus 78 ----~------~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~ 147 (221)
. ........+|||.||++++++++|+++|++||.|..|.|+++.. +++|||+|.+.++|.+|++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHh
Confidence 0 01112234799999999999999999999999999999987643 368999999999999999866
Q ss_pred C--ccCC--eEEEEEecCCC
Q 027630 148 H--EICG--QQVAIDSATPL 163 (221)
Q Consensus 148 ~--~i~g--~~l~V~~a~~~ 163 (221)
+ .|.+ +.|+|.++++.
T Consensus 155 ng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 155 NGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred cCCcccCCceEEEEEEecCC
Confidence 5 6754 58999998864
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.4e-16 Score=134.57 Aligned_cols=145 Identities=17% Similarity=0.239 Sum_probs=122.2
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR 83 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (221)
+++.+.++|+..+.+...+|-++- + |-+||||.|.++.+|++|+..+|-..+.+.|.+..++..++..
T Consensus 11 ~e~~l~~~f~~~~~v~s~rvc~d~-t-----------slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~ 78 (369)
T KOG0123|consen 11 TEAMLFDKFSPAGPVLSIRVCRDA-T-----------SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL 78 (369)
T ss_pred ChHHHHHHhcccCCceeEEEeecC-C-----------ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce
Confidence 466777777766655444444443 2 5699999999999999999999999999999988887655543
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 161 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~ 161 (221)
|||.||+++++..+|.++|+.||.|.+|++..+. .| ++|| ||+|++++.|.+||..++ .+.++.|.|....
T Consensus 79 ----~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 79 ----VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ----eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 9999999999999999999999999999999984 45 8999 999999999999998665 6789999999888
Q ss_pred CCCCCC
Q 027630 162 PLDDAG 167 (221)
Q Consensus 162 ~~~~~~ 167 (221)
+++.+.
T Consensus 152 ~~~er~ 157 (369)
T KOG0123|consen 152 RKEERE 157 (369)
T ss_pred chhhhc
Confidence 776654
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.4e-16 Score=128.19 Aligned_cols=148 Identities=15% Similarity=0.277 Sum_probs=127.3
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCC----
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGES---- 80 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~---- 80 (221)
++.++.+|..|+.|......-+.++. +-++|+||+|+-++.|.-|+..||+.++-+..+...-.+.-
T Consensus 127 EDtiR~AF~PFGPIKSInMSWDp~T~---------kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQ 197 (544)
T KOG0124|consen 127 EDTIRRAFDPFGPIKSINMSWDPATG---------KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQ 197 (544)
T ss_pred hHHHHhhccCCCCcceeecccccccc---------cccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccc
Confidence 57788999999988877777777776 67899999999999999999999999998877644322211
Q ss_pred --------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc
Q 027630 81 --------SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 150 (221)
Q Consensus 81 --------~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i 150 (221)
....-++|||..+.++++|++|+..|+.||+|..|.+.+++.++.++||+||+|.+..+...||..++ .+
T Consensus 198 piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL 277 (544)
T KOG0124|consen 198 PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL 277 (544)
T ss_pred hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc
Confidence 12345799999999999999999999999999999999999999999999999999999999998666 78
Q ss_pred CCeEEEEEecC
Q 027630 151 CGQQVAIDSAT 161 (221)
Q Consensus 151 ~g~~l~V~~a~ 161 (221)
.|..|+|-.+.
T Consensus 278 GGQyLRVGk~v 288 (544)
T KOG0124|consen 278 GGQYLRVGKCV 288 (544)
T ss_pred ccceEeccccc
Confidence 99999998775
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=4.4e-16 Score=132.14 Aligned_cols=83 Identities=24% Similarity=0.403 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||++||+++++++|+++|+.||.|++|+|+.|+.|++++|||||+|.++++|++||+.++ .|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999999999999999999999999999997655 8899999999
Q ss_pred ecCCC
Q 027630 159 SATPL 163 (221)
Q Consensus 159 ~a~~~ 163 (221)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88754
No 26
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.1e-15 Score=115.21 Aligned_cols=77 Identities=22% Similarity=0.470 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh--hCCccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~--~~~~i~g~~l~V~~a 160 (221)
...++|||+|||.++.+.+|+++|.+||.|.+|.|...+. ...||||+|++..+|+.||. +...+++..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g---~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG---PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC---CCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 4568999999999999999999999999999998854322 45799999999999999996 455899999999998
Q ss_pred CC
Q 027630 161 TP 162 (221)
Q Consensus 161 ~~ 162 (221)
..
T Consensus 81 rg 82 (241)
T KOG0105|consen 81 RG 82 (241)
T ss_pred cC
Confidence 63
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.66 E-value=1.6e-15 Score=135.67 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=116.6
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC------
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR------ 77 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~------ 77 (221)
+++.|.++|+.++.|....|..+..+. .++|||||.|.+...|..|+..|++..+.+........
T Consensus 308 ~~~~l~~~f~~~G~i~~~~~~~~~~~g---------~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~ 378 (509)
T TIGR01642 308 GEDQIKELLESFGDLKAFNLIKDIATG---------LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQ 378 (509)
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCC---------CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCC
Confidence 688999999999999888887776655 78899999999999999999999887776654211000
Q ss_pred ------C-----------------CCCCCCCCeEEEcCCCCC--C--------CHHHHHHHhhccCCeEEEEeecCC---
Q 027630 78 ------G-----------------ESSQRIGKKIFVGRLPQE--A--------TAEDLRRYFSRFGRILDVYVPKDP--- 121 (221)
Q Consensus 78 ------~-----------------~~~~~~~~~l~V~nLp~~--~--------te~~l~~~F~~~G~i~~v~~~~~~--- 121 (221)
. .....+..+|+|.||... + ..++|+++|++||.|+.|.|+++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~ 458 (509)
T TIGR01642 379 ATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDR 458 (509)
T ss_pred CCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCC
Confidence 0 001124567899998532 1 125789999999999999998753
Q ss_pred CCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCC
Q 027630 122 KRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 162 (221)
Q Consensus 122 ~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~ 162 (221)
.++...|++||+|.+.++|++||..++ .|+|+.|.|.+...
T Consensus 459 ~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 459 NSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 345567999999999999999998776 89999999998764
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.64 E-value=9.7e-16 Score=131.91 Aligned_cols=153 Identities=22% Similarity=0.312 Sum_probs=120.7
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC------
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR------ 77 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~------ 77 (221)
.+-+|.++|+..+.|.+..++.++-.. ++++.+||+|.+..+...|++. .+..+.+.|......
T Consensus 192 ~pRdL~efFs~~gkVrdVriI~Dr~s~---------rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~sEaeknr 261 (549)
T KOG0147|consen 192 PPRDLEEFFSIVGKVRDVRIIGDRNSR---------RSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLSEAEKNR 261 (549)
T ss_pred CchhHHHHHHhhcCcceeEeeccccch---------hhcceeEEEEecccchhhHhhh-cCCcccCceeEecccHHHHHH
Confidence 456788889888888888888887766 7889999999988888888754 444444444211100
Q ss_pred --------C-CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC
Q 027630 78 --------G-ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 148 (221)
Q Consensus 78 --------~-~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~ 148 (221)
. ..-..+...|||+||..++++++|+.+|++||.|+.|.+++|..||.++||+||+|.+.++|.+|+++++
T Consensus 262 ~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ln 341 (549)
T KOG0147|consen 262 AANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLN 341 (549)
T ss_pred HHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhc
Confidence 0 1112233349999999999999999999999999999999999999999999999999999999988666
Q ss_pred --ccCCeEEEEEecCCCCCC
Q 027630 149 --EICGQQVAIDSATPLDDA 166 (221)
Q Consensus 149 --~i~g~~l~V~~a~~~~~~ 166 (221)
+|-|+.|+|.....+...
T Consensus 342 gfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 342 GFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred cceecCceEEEEEeeeeccc
Confidence 889999998877655443
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.3e-14 Score=114.78 Aligned_cols=151 Identities=23% Similarity=0.268 Sum_probs=123.2
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC-----------CC-
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD-----------HP- 71 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~-----------~~- 71 (221)
+..+++.+|..++.|--.+|.++..+. .++|.||+-|...++|+.|+..+|+..-.+ .|
T Consensus 140 tqkelE~iFs~fGrIItSRiL~dqvtg---------~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 140 TQKELEQIFSPFGRIITSRILVDQVTG---------LSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred hHHHHHHHHHHhhhhhhhhhhhhcccc---------eecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 367899999999988777888887777 788999999999999999999987643222 11
Q ss_pred ---------------CCCCCC-----------------------C----------------CCCCCCCCeEEEcCCCCCC
Q 027630 72 ---------------GSFYGR-----------------------G----------------ESSQRIGKKIFVGRLPQEA 97 (221)
Q Consensus 72 ---------------~~~~~~-----------------------~----------------~~~~~~~~~l~V~nLp~~~ 97 (221)
.+.+.. . +.......+|||=||.+++
T Consensus 211 q~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~ 290 (360)
T KOG0145|consen 211 QKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDA 290 (360)
T ss_pred cccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCc
Confidence 000000 0 0113346889999999999
Q ss_pred CHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCC
Q 027630 98 TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 163 (221)
Q Consensus 98 te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~ 163 (221)
+|..|.++|.+||.|..|+|++|..|.+++||+||++.+-++|..||..++ .+.++.|.|.+...+
T Consensus 291 de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 291 DESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred hHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999999999999999999999999999999999999998665 889999999987654
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.8e-15 Score=133.56 Aligned_cols=155 Identities=25% Similarity=0.351 Sum_probs=121.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC----CC----
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG----SF---- 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~----~~---- 74 (221)
.+.+.+...|...+.|-...|..++... ....|.|||||+|.+.++|.+|+..|++..+.+++. ..
T Consensus 527 Tt~e~l~~~F~k~G~VlS~~I~kkkd~~------~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~ 600 (725)
T KOG0110|consen 527 TTLEDLEDLFSKQGTVLSIEISKKKDPA------NKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA 600 (725)
T ss_pred cchhHHHHHHHhcCeEEEEEEecccccc------ccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc
Confidence 4566777777776665555554443211 123678999999999999999999999888888773 11
Q ss_pred --CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc
Q 027630 75 --YGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 150 (221)
Q Consensus 75 --~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i 150 (221)
.+.........++|+|.|||+..+..+++++|..||.|.+|+|+.....+.++|||||+|-++.+|.+|+..+. .+
T Consensus 601 ~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHl 680 (725)
T KOG0110|consen 601 STVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHL 680 (725)
T ss_pred cccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccce
Confidence 11222333446799999999999999999999999999999999876666789999999999999999987654 78
Q ss_pred CCeEEEEEecCCC
Q 027630 151 CGQQVAIDSATPL 163 (221)
Q Consensus 151 ~g~~l~V~~a~~~ 163 (221)
.|+.|.+.||...
T Consensus 681 yGRrLVLEwA~~d 693 (725)
T KOG0110|consen 681 YGRRLVLEWAKSD 693 (725)
T ss_pred echhhheehhccc
Confidence 9999999999754
No 31
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.7e-14 Score=107.81 Aligned_cols=79 Identities=30% Similarity=0.588 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
...++|||+||+..+++.+|+.+|..||.|..|.|... +.|||||+|++..+|+.|+..+. .|+|..|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34789999999999999999999999999999988775 67999999999999999997554 999999999999
Q ss_pred CCCCCC
Q 027630 161 TPLDDA 166 (221)
Q Consensus 161 ~~~~~~ 166 (221)
.-+...
T Consensus 83 ~G~~r~ 88 (195)
T KOG0107|consen 83 TGRPRG 88 (195)
T ss_pred cCCccc
Confidence 755443
No 32
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.8e-15 Score=115.66 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|-|.||+.+++|++|+++|.+||.|..|.|.+|+.||.++|||||+|.+.++|.+||..++ -++.-.|+|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999998655 5677789999
Q ss_pred ecCCC
Q 027630 159 SATPL 163 (221)
Q Consensus 159 ~a~~~ 163 (221)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99986
No 33
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.61 E-value=2.3e-15 Score=120.62 Aligned_cols=140 Identities=19% Similarity=0.284 Sum_probs=117.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221)
.++.+++.+|++++++..+.|+ +.||||..++...|+.|+..|+...|.+..+....+... .
T Consensus 14 ~~~~elr~lFe~ygkVlECDIv-----------------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-s 75 (346)
T KOG0109|consen 14 ATEQELRSLFEQYGKVLECDIV-----------------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-S 75 (346)
T ss_pred cchHHHHHHHHhhCceEeeeee-----------------cccceEEeecccccHHHHhhcccceecceEEEEEecccc-C
Confidence 4677888888887765444443 368999999999999999999999888877655443333 4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
...++|+|+||.+.++.++|+..|++||.|.+|+|++| |+||.|+-.++|..||..++ ++.|++++|..+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 56789999999999999999999999999999999876 99999999999999997554 999999999999
Q ss_pred CCCCCCCC
Q 027630 161 TPLDDAGP 168 (221)
Q Consensus 161 ~~~~~~~~ 168 (221)
.++-...+
T Consensus 148 tsrlrtap 155 (346)
T KOG0109|consen 148 TSRLRTAP 155 (346)
T ss_pred ccccccCC
Confidence 88765544
No 34
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1e-15 Score=118.25 Aligned_cols=85 Identities=32% Similarity=0.525 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||++|..+++|.-|...|-+||.|.+|+++.|..++++|||+||+|...++|.+||.+++ +|.|+.|+|++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3456899999999999999999999999999999999999999999999999999999999999887 89999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
|+|.+-.
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9986543
No 35
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.4e-14 Score=124.67 Aligned_cols=80 Identities=26% Similarity=0.464 Sum_probs=73.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--------CccCCeEEEE
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--------HEICGQQVAI 157 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--------~~i~g~~l~V 157 (221)
.+|||+|||+++++++|.+.|++||+|..+.|+.++.|+.++|.|||.|.+..+|.+||..- -.|.|+.|.|
T Consensus 293 ~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv 372 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKV 372 (678)
T ss_pred ceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEee
Confidence 78999999999999999999999999999999999999999999999999999999999633 1578999999
Q ss_pred EecCCCCC
Q 027630 158 DSATPLDD 165 (221)
Q Consensus 158 ~~a~~~~~ 165 (221)
..|.+++.
T Consensus 373 ~~Av~Rke 380 (678)
T KOG0127|consen 373 TLAVTRKE 380 (678)
T ss_pred eeccchHH
Confidence 99987643
No 36
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=5.3e-15 Score=96.65 Aligned_cols=68 Identities=32% Similarity=0.687 Sum_probs=62.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEE
Q 027630 88 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 156 (221)
Q Consensus 88 l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~ 156 (221)
|||+|||+++++++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|++|++.++ .+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 778899999999999999999998554 78888874
No 37
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.60 E-value=1.7e-14 Score=110.43 Aligned_cols=80 Identities=29% Similarity=0.510 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
......|-|.||...++.++|+.+|++||.|-+|.|++|+.|.+++|||||.|.+..+|+.|++.+. .|+|+.|.|+.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 3446789999999999999999999999999999999999999999999999999999999998665 89999999998
Q ss_pred cC
Q 027630 160 AT 161 (221)
Q Consensus 160 a~ 161 (221)
|.
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 86
No 38
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=1e-14 Score=118.54 Aligned_cols=83 Identities=34% Similarity=0.591 Sum_probs=74.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEE
Q 027630 79 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 156 (221)
Q Consensus 79 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~ 156 (221)
++.....++|+|.|||+...+.||+.+|.+||+|.+|.|+.+ +.| +|||+||+|++.++|++|-+++| .|.||+|+
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-ERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-ERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-cCC-CCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 344567899999999999999999999999999999999886 334 89999999999999999988776 89999999
Q ss_pred EEecCCC
Q 027630 157 IDSATPL 163 (221)
Q Consensus 157 V~~a~~~ 163 (221)
|+.|.++
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9999865
No 39
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.9e-14 Score=113.22 Aligned_cols=85 Identities=26% Similarity=0.400 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
..+|+|||=.||.+..+.+|.++|.+||.|.+.++..|+.|.++|+|+||.|+++.+++.||..++ .|.-++|+|...
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 567999999999999999999999999999999999999999999999999999999999998776 888999999999
Q ss_pred CCCCCCC
Q 027630 161 TPLDDAG 167 (221)
Q Consensus 161 ~~~~~~~ 167 (221)
+|+..+.
T Consensus 363 RPkdanR 369 (371)
T KOG0146|consen 363 RPKDANR 369 (371)
T ss_pred CccccCC
Confidence 9987654
No 40
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=6.7e-14 Score=112.44 Aligned_cols=77 Identities=23% Similarity=0.306 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEecCC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATP 162 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~a~~ 162 (221)
..++|||+|||+.+++++|+++|+.||.|++|.|+.++. .+|||||+|.++++|+.||. +...|.++.|.|..+..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 357999999999999999999999999999999998864 46899999999999999986 45589999999999875
Q ss_pred C
Q 027630 163 L 163 (221)
Q Consensus 163 ~ 163 (221)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 41
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.9e-14 Score=101.37 Aligned_cols=82 Identities=23% Similarity=0.322 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh--CCccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~l~V~~ 159 (221)
...+++|||+||+..++|++|.++|+++|.|..|.+-.|+.+-.+.|||||+|.+.++|+.|+.. ...++.+.|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999974 4588999999998
Q ss_pred cCCC
Q 027630 160 ATPL 163 (221)
Q Consensus 160 a~~~ 163 (221)
.---
T Consensus 113 D~GF 116 (153)
T KOG0121|consen 113 DAGF 116 (153)
T ss_pred cccc
Confidence 7643
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=6.7e-14 Score=111.23 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=75.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 162 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~ 162 (221)
-..|||+.|..+++-++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|+.||..++ -|.+|.|+.+||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4689999999999999999999999999999999999999999999999999999999998665 78999999999976
Q ss_pred CC
Q 027630 163 LD 164 (221)
Q Consensus 163 ~~ 164 (221)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 54
No 43
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.3e-13 Score=108.63 Aligned_cols=84 Identities=21% Similarity=0.392 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh--CCccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~l~V~~a 160 (221)
.+-++|||+-|+.+++|..|+..|+.||.|+.|.|+.|..||+++|||||+|+++.++..|.+. ...|+++.|.|.+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4678999999999999999999999999999999999999999999999999999999999863 44899999999988
Q ss_pred CCCCCC
Q 027630 161 TPLDDA 166 (221)
Q Consensus 161 ~~~~~~ 166 (221)
.-+.-+
T Consensus 179 RgRTvk 184 (335)
T KOG0113|consen 179 RGRTVK 184 (335)
T ss_pred cccccc
Confidence 766544
No 44
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=1e-13 Score=90.93 Aligned_cols=68 Identities=38% Similarity=0.660 Sum_probs=60.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEE
Q 027630 88 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 156 (221)
Q Consensus 88 l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~ 156 (221)
|||+|||+++++++|.++|+.||.|..+.+..++. +..+++|||+|.+.++|.+|+...+ .|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 8899999999999999999997444 78888874
No 45
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=1e-13 Score=124.21 Aligned_cols=79 Identities=24% Similarity=0.485 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
...++|||+|||+.+++++|+++|.+||.|.+|.|+.|+.|++++|||||+|.+.++|++||+.++ .|.|+.|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999999999999999999999999999999999999999999997554 889999999865
Q ss_pred C
Q 027630 161 T 161 (221)
Q Consensus 161 ~ 161 (221)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 46
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.48 E-value=7e-13 Score=117.16 Aligned_cols=146 Identities=12% Similarity=0.160 Sum_probs=110.1
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCC-------
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG------- 76 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~------- 76 (221)
++++|.++|+.++.|....|..+..+. ++++||||.|.+.++|..|+..|++..+.+.++....
T Consensus 199 te~~l~~~f~~~G~i~~v~~~~d~~~g---------~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~ 269 (457)
T TIGR01622 199 TEQELRQIFEPFGDIEDVQLHRDPETG---------RSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYL 269 (457)
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCC---------ccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCcc
Confidence 588999999999988877777665544 6789999999999999999999876554433210000
Q ss_pred ---------------------------------------------C----------------------------------
Q 027630 77 ---------------------------------------------R---------------------------------- 77 (221)
Q Consensus 77 ---------------------------------------------~---------------------------------- 77 (221)
.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (457)
T TIGR01622 270 LDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMAR 349 (457)
T ss_pred ccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccC
Confidence 0
Q ss_pred -----CCCCCCCCCeEEEcCCCCCCC----------HHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHH
Q 027630 78 -----GESSQRIGKKIFVGRLPQEAT----------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR 142 (221)
Q Consensus 78 -----~~~~~~~~~~l~V~nLp~~~t----------e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~ 142 (221)
..........|+|.||....+ .++|++.|++||.|+.|.|... ...|++||.|.+.++|++
T Consensus 350 ~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 350 NSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVDAALA 425 (457)
T ss_pred CCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHHHHHH
Confidence 000113456788888844433 3678999999999999988643 357899999999999999
Q ss_pred HHhhCC--ccCCeEEEEEecCC
Q 027630 143 VSRRSH--EICGQQVAIDSATP 162 (221)
Q Consensus 143 al~~~~--~i~g~~l~V~~a~~ 162 (221)
|++.++ .++|+.|.|.+...
T Consensus 426 A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHhcCcccCCeEEEEEEEcH
Confidence 998776 89999999998754
No 47
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=2.5e-13 Score=115.97 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCH--HHHHHHHhhCC--ccCCeEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE--VVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~--~~a~~al~~~~--~i~g~~l~V 157 (221)
.....+||||||++.+++++|+.+|+.||.|..|.|+ +.|| ||||||+|.+. .++.+||..++ ++.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3456899999999999999999999999999999999 4666 89999999987 67899998665 899999999
Q ss_pred EecCCC
Q 027630 158 DSATPL 163 (221)
Q Consensus 158 ~~a~~~ 163 (221)
..|+|.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999864
No 48
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.4e-14 Score=108.79 Aligned_cols=79 Identities=25% Similarity=0.508 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
..+.-|||+|||.++||.+|.-+|++||+|++|.|++|+.||+++||||+.|++..+..-|+.+++ .|.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 346789999999999999999999999999999999999999999999999999998888887776 789999999865
Q ss_pred C
Q 027630 161 T 161 (221)
Q Consensus 161 ~ 161 (221)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.2e-13 Score=113.48 Aligned_cols=87 Identities=24% Similarity=0.457 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC---cc--CCeE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EI--CGQQ 154 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~---~i--~g~~ 154 (221)
.++...-++||+.||..++|.+|+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..+| .| ....
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 344566799999999999999999999999999999999999999999999999999999999987665 44 3478
Q ss_pred EEEEecCCCCCC
Q 027630 155 VAIDSATPLDDA 166 (221)
Q Consensus 155 l~V~~a~~~~~~ 166 (221)
|.|++|+...++
T Consensus 109 vqvk~Ad~E~er 120 (510)
T KOG0144|consen 109 VQVKYADGERER 120 (510)
T ss_pred eeecccchhhhc
Confidence 999999866555
No 50
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=1.2e-12 Score=103.64 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEecC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSAT 161 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~a~ 161 (221)
.+.+|||+||++.+|+++|+++|+.||+|.+|.|+++.. .++||||+|.++++++.||. +...|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 468999999999999999999999999999999999854 45799999999999999985 6679999999988765
No 51
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=3.6e-13 Score=101.34 Aligned_cols=83 Identities=24% Similarity=0.495 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh--hCCccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~--~~~~i~g~~l~V~~ 159 (221)
.....+|||+||+..++++.|.++|-+.|+|..+.+++|+.|..++|||||+|.++++|+-||+ ++..|.|++|+|+.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999986 44488999999999
Q ss_pred cCCCC
Q 027630 160 ATPLD 164 (221)
Q Consensus 160 a~~~~ 164 (221)
+....
T Consensus 86 as~~~ 90 (203)
T KOG0131|consen 86 ASAHQ 90 (203)
T ss_pred ccccc
Confidence 98443
No 52
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.41 E-value=3.1e-12 Score=109.99 Aligned_cols=83 Identities=28% Similarity=0.427 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC-CccCCeEEEEEecCC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATP 162 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~-~~i~g~~l~V~~a~~ 162 (221)
....|||.|||.++++++|+++|..||.|+...|......++..+||||+|.+.+.++.||+.. ..|.+++|.|+..++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4456999999999999999999999999998877664323444489999999999999999744 488999999998887
Q ss_pred CCCC
Q 027630 163 LDDA 166 (221)
Q Consensus 163 ~~~~ 166 (221)
....
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5443
No 53
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.8e-12 Score=110.82 Aligned_cols=146 Identities=21% Similarity=0.264 Sum_probs=119.9
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC--------
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY-------- 75 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~-------- 75 (221)
|..++...|+.+++|-.++|.++... +++| ||.|++.++|.+|+..+|+..+.+.+.-..
T Consensus 89 ~~~~~~d~f~~~g~ilS~kv~~~~~g-----------~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 89 DNKSLYDTFSEFGNILSCKVATDENG-----------SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred CcHHHHHHHHhhcCeeEEEEEEcCCC-----------ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 45677788888888888888777543 7889 999999999999999999999998874221
Q ss_pred --CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccC
Q 027630 76 --GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 151 (221)
Q Consensus 76 --~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~ 151 (221)
.... .......+||.+++.++++..|..+|..+|.|..+.++.+ .++++++|+||.|.+.+.|..|+..++ .+.
T Consensus 157 ~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 157 EAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred cccccc-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 1112 3445678999999999999999999999999999999998 456699999999999999999998766 566
Q ss_pred CeEEEEEecCCC
Q 027630 152 GQQVAIDSATPL 163 (221)
Q Consensus 152 g~~l~V~~a~~~ 163 (221)
+..+.|..+..+
T Consensus 235 ~~~~~V~~aqkk 246 (369)
T KOG0123|consen 235 DKELYVGRAQKK 246 (369)
T ss_pred ccceeecccccc
Confidence 788888877753
No 54
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=7.5e-13 Score=95.04 Aligned_cols=82 Identities=26% Similarity=0.360 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
...+..|||.++..+++|++|.+.|..||+|+.+.|..|+.||-.+|||+|+|++.+.|++|+..++ +|.+..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999998665 89999999999
Q ss_pred cCCC
Q 027630 160 ATPL 163 (221)
Q Consensus 160 a~~~ 163 (221)
+.-+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 9644
No 55
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=3.4e-12 Score=82.77 Aligned_cols=70 Identities=37% Similarity=0.720 Sum_probs=62.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 87 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
+|||.|||..+++++|+++|.+||.|..+.+..++ +.++++|||+|.+.+.|+.|+..++ .+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 6688999999999999999997554 7788888763
No 56
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=4.4e-12 Score=81.92 Aligned_cols=69 Identities=35% Similarity=0.640 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 90 VGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 90 V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
|+|||+.+++++|+++|.+||.|..+.+..++.++.++++|||+|.+.++|..|+..++ .+.++.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988888999999999999999999997654 6788888763
No 57
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.36 E-value=4.6e-12 Score=103.05 Aligned_cols=78 Identities=35% Similarity=0.656 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 162 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~ 162 (221)
..+|||+|||+.+++++|.++|.+||.|..+.+..++.++..+|||||+|.+.+++..|+..++ .|.++.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999999999999999999999999999998655 88999999999654
No 58
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=3.2e-12 Score=110.54 Aligned_cols=82 Identities=30% Similarity=0.552 Sum_probs=77.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 163 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~ 163 (221)
+.|||||||.++++++|..+|+..|.|.+++++.|+.||+.+||+|++|.+.++++.|+++++ ++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999998776 899999999999876
Q ss_pred CCCC
Q 027630 164 DDAG 167 (221)
Q Consensus 164 ~~~~ 167 (221)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6543
No 59
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=2.9e-11 Score=78.73 Aligned_cols=72 Identities=35% Similarity=0.689 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 87 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
+|+|++||+.+++++|+++|..+|.|..+.+..++.+ ..+++|||+|.+.++|..|+..++ .+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987655 678999999999999999998655 57899888764
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=2.2e-11 Score=83.60 Aligned_cols=80 Identities=18% Similarity=0.402 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
+.....|||.|||..+|.++..++|.+||.|..|+|-..+. .+|-|||.|++..+|.+|+..+. .++++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 44567899999999999999999999999999999976554 67899999999999999998665 78899999988
Q ss_pred cCCCC
Q 027630 160 ATPLD 164 (221)
Q Consensus 160 a~~~~ 164 (221)
-+|.+
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 77653
No 61
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.28 E-value=4.7e-12 Score=105.14 Aligned_cols=85 Identities=41% Similarity=0.656 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEecCC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATP 162 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~a~~ 162 (221)
..++|||++|+|+++++.|++.|.+||+|.+|.+++|+.+++++||+||+|++.+.+.++|. ..|.|+++.|.++.|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999999999999999999999999998886 46799999999999999
Q ss_pred CCCCCC
Q 027630 163 LDDAGP 168 (221)
Q Consensus 163 ~~~~~~ 168 (221)
+..+..
T Consensus 85 r~~~~~ 90 (311)
T KOG4205|consen 85 REDQTK 90 (311)
T ss_pred cccccc
Confidence 876554
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.27 E-value=6.4e-11 Score=100.05 Aligned_cols=78 Identities=17% Similarity=0.343 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
..+.+||.|||.++.|++|+++|. +-|+|+.|.|+.| .+++.+|||.|+|++++.+++|++.++ ++.|++|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999995 6789999999999 789999999999999999999998765 899999998876
Q ss_pred CC
Q 027630 161 TP 162 (221)
Q Consensus 161 ~~ 162 (221)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 53
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=7.9e-12 Score=100.48 Aligned_cols=71 Identities=30% Similarity=0.687 Sum_probs=66.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 162 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~ 162 (221)
..+|||+|||..+++.+|+.+|++||+|.+|.|+++ |+||..++...++.||.++| .|+|..|.|+-++.
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 358999999999999999999999999999999876 99999999999999999887 89999999998887
Q ss_pred C
Q 027630 163 L 163 (221)
Q Consensus 163 ~ 163 (221)
+
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 6
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.8e-11 Score=96.36 Aligned_cols=97 Identities=23% Similarity=0.382 Sum_probs=81.1
Q ss_pred CCCCCCCCCCCCCCC-CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC
Q 027630 69 DHPGSFYGRGESSQR-IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 147 (221)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~ 147 (221)
+.|+.+.+.+.+.+. ..++|||+-|.....|++++.+|..||.|++|.+++. ..+.+||||||.|.+..+|+.||..+
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHh
Confidence 345666666655554 7899999999999999999999999999999999987 45779999999999999999999877
Q ss_pred C---ccC--CeEEEEEecCCCCCC
Q 027630 148 H---EIC--GQQVAIDSATPLDDA 166 (221)
Q Consensus 148 ~---~i~--g~~l~V~~a~~~~~~ 166 (221)
| .+- ...|.|++++..+++
T Consensus 81 HgSqTmpGASSSLVVK~ADTdkER 104 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADTDKER 104 (371)
T ss_pred cccccCCCCccceEEEeccchHHH
Confidence 6 443 357899999876654
No 65
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.3e-11 Score=102.11 Aligned_cols=77 Identities=25% Similarity=0.493 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
-.++|||+.|.+++.|+.|+..|.+||.|++|.+.+|+.|++++|||||+|+-++.|+-|++.++ .+.|+.|+|...
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 35899999999999999999999999999999999999999999999999999999999998766 789999988743
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.6e-11 Score=99.11 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
.++.+.|||--|.+-++.++|+-+|+.||.|..|.|++|..||.+..||||+|++.+++++|.-+|. .|+.+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 4567899999999999999999999999999999999999999999999999999999999976554 67999999999
Q ss_pred cCCC
Q 027630 160 ATPL 163 (221)
Q Consensus 160 a~~~ 163 (221)
+++-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8743
No 67
>smart00361 RRM_1 RNA recognition motif.
Probab=99.13 E-value=2.7e-10 Score=74.69 Aligned_cols=59 Identities=27% Similarity=0.335 Sum_probs=51.0
Q ss_pred HHHHHHHhh----ccCCeEEEE-eecCCCC--CCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 99 AEDLRRYFS----RFGRILDVY-VPKDPKR--TGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 99 e~~l~~~F~----~~G~i~~v~-~~~~~~t--g~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
+++|+++|+ +||.|.+|. ++.++.+ +.++||+||+|.+.++|.+|+..++ .+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 7777666 8899999999999999999998665 788998876
No 68
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=3.7e-10 Score=70.67 Aligned_cols=54 Identities=30% Similarity=0.540 Sum_probs=46.9
Q ss_pred HHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 102 LRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 102 l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
|.++|++||.|..+.+..+. +++|||+|.+.++|+.|+..++ .+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998763 5799999999999999998554 889999999986
No 69
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.10 E-value=6.3e-09 Score=89.30 Aligned_cols=146 Identities=16% Similarity=0.205 Sum_probs=102.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHh-----CCCCcCCCC-----C
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL-----GAPTLYDHP-----G 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~-----~~~~~~~~~-----~ 72 (221)
.++++|...|.. ..|.. +++.+.+. +..+=+||+|++.++++.|+..- ++.+.+-.. .
T Consensus 22 at~~ei~~Ff~~-~~I~~--~~~~r~~G---------r~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d 89 (510)
T KOG4211|consen 22 ATEKEILDFFSN-CGIEN--LEIPRRNG---------RPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEAD 89 (510)
T ss_pred ccHHHHHHHHhc-CceeE--EEEeccCC---------CcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccc
Confidence 467788888875 33443 44444455 55677999999999999998873 222111111 1
Q ss_pred CCCCC-CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCc
Q 027630 73 SFYGR-GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHE 149 (221)
Q Consensus 73 ~~~~~-~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~ 149 (221)
+...+ ......+...|-+++||+.|++++|.++|+..-.+.. |.++.+ ..+++.|-|||+|++.+.|+.||.. ...
T Consensus 90 ~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~rhre~ 168 (510)
T KOG4211|consen 90 WVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGRHREN 168 (510)
T ss_pred ccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHHHHHh
Confidence 11111 1112246678999999999999999999998876655 556666 4566889999999999999999974 447
Q ss_pred cCCeEEEEEecC
Q 027630 150 ICGQQVAIDSAT 161 (221)
Q Consensus 150 i~g~~l~V~~a~ 161 (221)
|..+-|.|..+.
T Consensus 169 iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 169 IGHRYIEVFRSS 180 (510)
T ss_pred hccceEEeehhH
Confidence 888888887664
No 70
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.08 E-value=3.6e-10 Score=98.38 Aligned_cols=80 Identities=26% Similarity=0.597 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
...++|||.+|+..+...+|+.+|++||+|+-.+|+.+..+.-.++|+||++.+.++|.+||.++| +|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 346789999999999999999999999999999999988887789999999999999999999987 899999999988
Q ss_pred CC
Q 027630 161 TP 162 (221)
Q Consensus 161 ~~ 162 (221)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 63
No 71
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=8.1e-10 Score=90.95 Aligned_cols=77 Identities=26% Similarity=0.487 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC-C--ccCCeEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-H--EICGQQVAI 157 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~-~--~i~g~~l~V 157 (221)
.+....+|||++|...++|.+|++.|.+||+|..+.++.. +++|||+|.+.++|+.|.+.. + .|+|.+|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3456689999999999999999999999999999998763 569999999999999997643 3 789999999
Q ss_pred EecCCC
Q 027630 158 DSATPL 163 (221)
Q Consensus 158 ~~a~~~ 163 (221)
.|..+.
T Consensus 298 ~Wg~~~ 303 (377)
T KOG0153|consen 298 KWGRPK 303 (377)
T ss_pred EeCCCc
Confidence 999983
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=8.4e-09 Score=91.94 Aligned_cols=76 Identities=29% Similarity=0.469 Sum_probs=66.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCC---CcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEec
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRT---GHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 160 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg---~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a 160 (221)
++|||.||+++++.++|...|.+.|.|..+.|...+... .+.||+||+|.+.++|++|+..+ +.|.|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999999887665322 24599999999999999999864 5899999999999
Q ss_pred C
Q 027630 161 T 161 (221)
Q Consensus 161 ~ 161 (221)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 73
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.95 E-value=1.7e-08 Score=78.92 Aligned_cols=117 Identities=18% Similarity=0.276 Sum_probs=91.3
Q ss_pred ccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC---------------------------------C--------
Q 027630 40 RMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR---------------------------------G-------- 78 (221)
Q Consensus 40 ~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~---------------------------------~-------- 78 (221)
+++|.+||.|.+.+.|..|+.+|++...++.|.+..-+ +
T Consensus 50 KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~ 129 (221)
T KOG4206|consen 50 KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNM 129 (221)
T ss_pred CccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCccccccccccc
Confidence 78899999999999999999999999888888311100 0
Q ss_pred ----------CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC
Q 027630 79 ----------ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 148 (221)
Q Consensus 79 ----------~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~ 148 (221)
.....+...+|+.|||.+++.+.|..+|.+|.-..+|+++.. ..+.|||+|.+...+..|...+.
T Consensus 130 ~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq 204 (221)
T KOG4206|consen 130 NRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQ 204 (221)
T ss_pred ccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhc
Confidence 011344567899999999999999999999999999998875 45799999999888777765443
Q ss_pred --cc-CCeEEEEEecC
Q 027630 149 --EI-CGQQVAIDSAT 161 (221)
Q Consensus 149 --~i-~g~~l~V~~a~ 161 (221)
.| ....+.|.+++
T Consensus 205 ~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 205 GFKITKKNTMQITFAK 220 (221)
T ss_pred cceeccCceEEecccC
Confidence 33 36677777664
No 74
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.92 E-value=7.2e-09 Score=79.85 Aligned_cols=84 Identities=19% Similarity=0.418 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRF-GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 156 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~ 156 (221)
+......-+||..+|.-+.+.+|..+|.+| |.+..+++-+++.||.++|||||+|++++.|+-|.+.|+ -+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344556778999999999999999999998 678888888999999999999999999999999988776 56788888
Q ss_pred EEecCCC
Q 027630 157 IDSATPL 163 (221)
Q Consensus 157 V~~a~~~ 163 (221)
|.+-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 8877665
No 75
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.92 E-value=2.7e-09 Score=95.79 Aligned_cols=77 Identities=21% Similarity=0.441 Sum_probs=68.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 161 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~ 161 (221)
-++||||++|+..++|.+|..+|+.||+|.+|.++. +++||||.+....+|++|+.++. .+..+.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 357899999999999999999999999999998876 57899999999999999998664 7889999999998
Q ss_pred CCCCC
Q 027630 162 PLDDA 166 (221)
Q Consensus 162 ~~~~~ 166 (221)
.+.-+
T Consensus 494 g~G~k 498 (894)
T KOG0132|consen 494 GKGPK 498 (894)
T ss_pred cCCcc
Confidence 65433
No 76
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.89 E-value=8.5e-09 Score=80.56 Aligned_cols=77 Identities=29% Similarity=0.492 Sum_probs=67.7
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 85 GKKIFVGRLPQEATAEDLRR----YFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~----~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
..+|||.||+..+..++|+. +|++||.|.+|.... |.+.+|-|||.|.+.+.|-.|+..++ .+.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999998877 999999999998764 46689999999999999999998776 7899999999
Q ss_pred ecCCCC
Q 027630 159 SATPLD 164 (221)
Q Consensus 159 ~a~~~~ 164 (221)
+|..+.
T Consensus 86 yA~s~s 91 (221)
T KOG4206|consen 86 YAKSDS 91 (221)
T ss_pred cccCcc
Confidence 998653
No 77
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=3.6e-07 Score=69.49 Aligned_cols=125 Identities=16% Similarity=0.191 Sum_probs=90.4
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC------CCC------
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD------HPG------ 72 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~------~~~------ 72 (221)
+.+++.+|.+++.|....|...+-. -.|+||+|+.+-+|+.|+-.-++..+.+ .|.
T Consensus 20 ekeieDlFyKyg~i~~ieLK~r~g~------------ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~ 87 (241)
T KOG0105|consen 20 EKEIEDLFYKYGRIREIELKNRPGP------------PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSS 87 (241)
T ss_pred hccHHHHHhhhcceEEEEeccCCCC------------CCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCccc
Confidence 4567777777776643333322222 3799999999999999987754332222 221
Q ss_pred ---------------CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCH
Q 027630 73 ---------------SFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE 137 (221)
Q Consensus 73 ---------------~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~ 137 (221)
.......++.....+|.|.+||++.++++|++...+-|.|....+.+| |.+.|+|...
T Consensus 88 ~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~ 160 (241)
T KOG0105|consen 88 DRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRK 160 (241)
T ss_pred ccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeeh
Confidence 001112344566789999999999999999999999999999988776 4899999999
Q ss_pred HHHHHHHhhCC
Q 027630 138 VVADRVSRRSH 148 (221)
Q Consensus 138 ~~a~~al~~~~ 148 (221)
++.+-||.++.
T Consensus 161 eDMkYAvr~ld 171 (241)
T KOG0105|consen 161 EDMKYAVRKLD 171 (241)
T ss_pred hhHHHHHHhhc
Confidence 99999987553
No 78
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.79 E-value=7.3e-08 Score=83.87 Aligned_cols=144 Identities=14% Similarity=0.187 Sum_probs=103.0
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC--------
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY-------- 75 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~-------- 75 (221)
+++.+..+|+.++.|+-..+.++--++ +++||||+.|...+.|.+|+..||+..+.+.++.+.
T Consensus 291 te~~lr~ifepfg~Ie~v~l~~d~~tG---------~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 291 TEDMLRGIFEPFGKIENVQLTKDSETG---------RSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred hHHHHhhhccCcccceeeeeccccccc---------cccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeeccc
Confidence 467888999999999988888776677 889999999999999999999998766666552100
Q ss_pred --C------------------C---------------------------------------------CCCCC-------C
Q 027630 76 --G------------------R---------------------------------------------GESSQ-------R 83 (221)
Q Consensus 76 --~------------------~---------------------------------------------~~~~~-------~ 83 (221)
. . ...+. .
T Consensus 362 ~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i 441 (549)
T KOG0147|consen 362 KEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDI 441 (549)
T ss_pred ccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCC
Confidence 0 0 00000 1
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccC
Q 027630 84 IGKKIFVGRL--PQEAT--------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 151 (221)
Q Consensus 84 ~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~ 151 (221)
+..++.+.|+ |.+.| .+++.+.+.+||.|.+|.|-.+ +-|+.||.|.+.+.|..|+..+| .|.
T Consensus 442 ~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 442 PTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred ccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 1222333333 11111 2456667799999999988654 44899999999999999998887 789
Q ss_pred CeEEEEEecC
Q 027630 152 GQQVAIDSAT 161 (221)
Q Consensus 152 g~~l~V~~a~ 161 (221)
|+.|.+.+-.
T Consensus 517 gr~Ita~~~~ 526 (549)
T KOG0147|consen 517 GRMITAKYLP 526 (549)
T ss_pred cceeEEEEee
Confidence 9999887753
No 79
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.73 E-value=3.4e-08 Score=81.83 Aligned_cols=127 Identities=20% Similarity=0.287 Sum_probs=100.3
Q ss_pred ccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC--------C---CCCCCCCCCCCCCeEE-EcCCCCCCCHHHHHHHhh
Q 027630 40 RMSHGGYGAYNAYISAATRYAALGAPTLYDHPG--------S---FYGRGESSQRIGKKIF-VGRLPQEATAEDLRRYFS 107 (221)
Q Consensus 40 ~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~l~-V~nLp~~~te~~l~~~F~ 107 (221)
.+++++++.|...+.+.+++.......+..... . .............++| |++|+..+++++|+..|.
T Consensus 128 ~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~ 207 (285)
T KOG4210|consen 128 SSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFV 207 (285)
T ss_pred ccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhcc
Confidence 678999999999999999998865433322221 0 0111122233455666 999999999999999999
Q ss_pred ccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeEEEEEecCCCCCC
Q 027630 108 RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSATPLDDA 166 (221)
Q Consensus 108 ~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~l~V~~a~~~~~~ 166 (221)
.++.|..++++.++.++..+||++|.|.+...+..++.. ...+.++.+.|.+..++...
T Consensus 208 ~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 208 SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCCccc
Confidence 999999999999999999999999999999999999874 44888999999988877554
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.72 E-value=3e-08 Score=84.10 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=64.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||.|||.++||+.|++-|..||.|..+.|+ ++++.+| .|.|.++++|+.||..++ .++|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4567899999999999999999999999999999885 3466776 899999999999987554 89999999987
Q ss_pred c
Q 027630 160 A 160 (221)
Q Consensus 160 a 160 (221)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 81
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.63 E-value=1.9e-07 Score=80.44 Aligned_cols=79 Identities=18% Similarity=0.321 Sum_probs=65.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-ccCCeEEEEEec
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSA 160 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~l~V~~a 160 (221)
.....-|-+.+|||++|+++|.++|+.++ |+.+.++ +.+|+..|-|||+|.+++++++|+++.. .+..+-|.|-.+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 34567788999999999999999999987 6665554 4689999999999999999999998654 677788888877
Q ss_pred CCC
Q 027630 161 TPL 163 (221)
Q Consensus 161 ~~~ 163 (221)
.+.
T Consensus 84 ~~~ 86 (510)
T KOG4211|consen 84 GGA 86 (510)
T ss_pred CCc
Confidence 543
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=6.8e-08 Score=76.05 Aligned_cols=131 Identities=19% Similarity=0.294 Sum_probs=96.4
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC------CC------
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH------PG------ 72 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~------~~------ 72 (221)
+.+|+.+|+..+.|....+ ..+|+||.|.+.-+|..|+..+++..+... |.
T Consensus 15 ~~d~E~~f~~yg~~~d~~m-----------------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 15 ERDVERFFKGYGKIPDADM-----------------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR 77 (216)
T ss_pred hhHHHHHHhhcccccccee-----------------ecccceeccCchhhhhcccchhcCceecceeeeeeccccccccc
Confidence 5667777777666543222 237889999999999999998876555443 11
Q ss_pred --CCCC-------CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHH
Q 027630 73 --SFYG-------RGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 143 (221)
Q Consensus 73 --~~~~-------~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~a 143 (221)
+..+ .-..+..+.+.|.|.+++.++.+.+|.+.|.++|.+....+ ..+++||+|.+.+++..|
T Consensus 78 g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 78 GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhc
Confidence 0000 11123456788999999999999999999999999855444 345999999999999999
Q ss_pred HhhCC--ccCCeEEEEEec
Q 027630 144 SRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 144 l~~~~--~i~g~~l~V~~a 160 (221)
|..++ .+.++.|.+...
T Consensus 150 ~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred chhccchhhcCceeeeccc
Confidence 98665 889999998443
No 83
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.55 E-value=3.4e-07 Score=73.59 Aligned_cols=81 Identities=23% Similarity=0.353 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
....+|+|.|||..+++++|+++|..|+.+..+.|..+ .+|.+.|.|-|.|...++|++|++.++ .++|+.|.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34578999999999999999999999999999988888 568899999999999999999998665 789999988877
Q ss_pred CCCC
Q 027630 161 TPLD 164 (221)
Q Consensus 161 ~~~~ 164 (221)
.+..
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6443
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.54 E-value=7.1e-07 Score=69.80 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=46.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 147 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~ 147 (221)
.+|||.||..+++|++|+.+|+.|-....++|... . ....||++|++.+.|..|+..+
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHh
Confidence 57999999999999999999999986655555322 1 3458999999999998887643
No 85
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=1.2e-07 Score=74.65 Aligned_cols=70 Identities=33% Similarity=0.728 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 163 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~ 163 (221)
.+|||++||+.+.+.+|+.+|..||.|.+|.+. .+|+||+|.+..+|+.||..++ +|++..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 579999999999999999999999999999873 4699999999999999997554 778777888888754
No 86
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.51 E-value=4.8e-07 Score=74.81 Aligned_cols=79 Identities=16% Similarity=0.378 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccC
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 151 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~ 151 (221)
....+.|||.|||.++|.+++.++|++||.|. .|+|-++. .|+.+|=|.|.|...++++-||+.+. .|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34456799999999999999999999999875 36777774 48899999999999999999987655 889
Q ss_pred CeEEEEEecC
Q 027630 152 GQQVAIDSAT 161 (221)
Q Consensus 152 g~~l~V~~a~ 161 (221)
|+.|+|..|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999886
No 87
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.50 E-value=2.3e-07 Score=74.55 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=75.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAID 158 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~ 158 (221)
....+...+||+|+...++.++++..|+.||.|..+.++.|+.++.+++|+||+|.+.+.++.++. +...|.++.+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 345678899999999999999999999999999999999999999999999999999999999998 5568999999888
Q ss_pred ecCCC
Q 027630 159 SATPL 163 (221)
Q Consensus 159 ~a~~~ 163 (221)
+..-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 77644
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.46 E-value=5.4e-07 Score=80.69 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=70.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCC---CCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK---RTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ 154 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~---tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~ 154 (221)
...+..++|||+||++.++++.|...|..||+|..|+|+..+. ....+-|+||.|-+..++++|++.++ .+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 3466789999999999999999999999999999999987653 23456799999999999999998765 678888
Q ss_pred EEEEecC
Q 027630 155 VAIDSAT 161 (221)
Q Consensus 155 l~V~~a~ 161 (221)
+++-|++
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9988885
No 89
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.45 E-value=2.1e-07 Score=73.96 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
......+||++.|.-+++.+.|-..|.+|-.....++++|+.|++++||+||.|.+..++..|+..++ .++.+.|.++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 35567899999999999999999999999988889999999999999999999999999999997554 7788888777
Q ss_pred ecCCCC
Q 027630 159 SATPLD 164 (221)
Q Consensus 159 ~a~~~~ 164 (221)
.+.-++
T Consensus 266 kS~wke 271 (290)
T KOG0226|consen 266 KSEWKE 271 (290)
T ss_pred hhhHHh
Confidence 665443
No 90
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.43 E-value=1.4e-06 Score=72.50 Aligned_cols=84 Identities=18% Similarity=0.306 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccC
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEIC 151 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~ 151 (221)
.....+|||-+||..+++++|.++|.+++.|. .|.|-++++|++.|+-|.|+|.+...|+.||... ..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567899999999999999999999999884 3667788999999999999999999999998744 4889
Q ss_pred CeEEEEEecCCCCC
Q 027630 152 GQQVAIDSATPLDD 165 (221)
Q Consensus 152 g~~l~V~~a~~~~~ 165 (221)
+..|+|..|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999887664
No 91
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.43 E-value=2.6e-06 Score=66.66 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=66.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCC-CCCcceEEEEEEcCHHHHHHHHhhCC--cc---CCeEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK-RTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQQV 155 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~-tg~~~g~afV~f~~~~~a~~al~~~~--~i---~g~~l 155 (221)
....++|||.+||.++...+|..+|..|--.+.+.|..... ....+-+||++|.+..+|++|+..++ .+ .+..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 45679999999999999999999999998776666543322 22345799999999999999987665 22 57789
Q ss_pred EEEecCCCCCCCC
Q 027630 156 AIDSATPLDDAGP 168 (221)
Q Consensus 156 ~V~~a~~~~~~~~ 168 (221)
+|.+|+.-.++.+
T Consensus 111 hiElAKSNtK~kr 123 (284)
T KOG1457|consen 111 HIELAKSNTKRKR 123 (284)
T ss_pred EeeehhcCccccc
Confidence 9999876544433
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=1.9e-06 Score=75.64 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=104.7
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC--------
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY-------- 75 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~-------- 75 (221)
+++.+.+++..++.|-+-.++.+..+. -+++|+|.+|...+-...|++.+|++.+.+....+.
T Consensus 302 ~~~q~~Ell~~fg~lk~f~lv~d~~~g---------~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 302 TEDQVKELLDSFGPLKAFRLVKDSATG---------NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred CHHHHHHHHHhcccchhheeecccccc---------cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 466788899999999999999998876 688999999999999999999999888887652111
Q ss_pred ---CCC--------------CCCCCCCCeEEEcCC--CCC-CCH-------HHHHHHhhccCCeEEEEeecCCCC---CC
Q 027630 76 ---GRG--------------ESSQRIGKKIFVGRL--PQE-ATA-------EDLRRYFSRFGRILDVYVPKDPKR---TG 125 (221)
Q Consensus 76 ---~~~--------------~~~~~~~~~l~V~nL--p~~-~te-------~~l~~~F~~~G~i~~v~~~~~~~t---g~ 125 (221)
+.. .....+...|-+.|+ |.+ .++ ++++..+++||.|..|.++++-.. .-
T Consensus 373 ~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~ 452 (500)
T KOG0120|consen 373 ANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVP 452 (500)
T ss_pred ccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCC
Confidence 000 000111122222222 111 122 234455678999999999887222 22
Q ss_pred cceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCC
Q 027630 126 HRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 162 (221)
Q Consensus 126 ~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~ 162 (221)
..|-.||+|.+.+++++|...++ .+.++.|...|-.+
T Consensus 453 G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 453 GTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 35678999999999999998776 88999988877653
No 93
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=1.7e-07 Score=72.98 Aligned_cols=75 Identities=15% Similarity=0.309 Sum_probs=62.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh--hCCccCCeEEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 158 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~--~~~~i~g~~l~V~ 158 (221)
.....+|||+|+...++|+.|.++|-+-|.|..|.|+.++. ++.+ ||||.|.++.++.-|++ +...+.+..|.|+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 45678999999999999999999999999999999988854 4456 99999999999999975 4445566655544
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=1.1e-06 Score=77.18 Aligned_cols=127 Identities=18% Similarity=0.304 Sum_probs=99.3
Q ss_pred ccCCceeEEEeehhhHHHHHHHhC-----CCCcCCCC-------------C-----CCCCCCCCCCCCCCeEEEcCCCCC
Q 027630 40 RMSHGGYGAYNAYISAATRYAALG-----APTLYDHP-------------G-----SFYGRGESSQRIGKKIFVGRLPQE 96 (221)
Q Consensus 40 ~~~~~g~~~~~~~~~a~~a~~~~~-----~~~~~~~~-------------~-----~~~~~~~~~~~~~~~l~V~nLp~~ 96 (221)
..++|+|+.|.+.++|..++...+ .+.....| . ...+.........+++||++||..
T Consensus 221 ~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~ 300 (500)
T KOG0120|consen 221 LEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLY 300 (500)
T ss_pred ccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCc
Confidence 457899999999999988877642 22111111 0 111122233446789999999999
Q ss_pred CCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCCCCC
Q 027630 97 ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDDA 166 (221)
Q Consensus 97 ~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~~~~ 166 (221)
+++.++.++...||.+....++.+..++.++||||.+|-+......|+..++ .+.++.|.|..|.+....
T Consensus 301 l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 301 LTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred cCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 9999999999999999999999999999999999999999999999998666 778899999988755443
No 95
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.36 E-value=4.1e-06 Score=58.05 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=61.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-----cc-CCeEEEE
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-----EI-CGQQVAI 157 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-----~i-~g~~l~V 157 (221)
++|.|.|||...+.++|.+++... |....+.++.|..+..+.|||||.|.+++.+.+-.+..+ .+ ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999998888643 577788999999999999999999999999988765332 22 3566677
Q ss_pred EecC
Q 027630 158 DSAT 161 (221)
Q Consensus 158 ~~a~ 161 (221)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7775
No 96
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=5.7e-07 Score=78.55 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=60.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 156 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~ 156 (221)
.....+|+|-|||..+++++|+.+|+.||+|..|+.... .++..||+|.|..+|++|++.++ +|.++.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345679999999999999999999999999999765443 67899999999999999998665 77787776
No 97
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.20 E-value=3.2e-06 Score=70.13 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=60.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
....+||+||-|++|+++|.+.+...| .+.++++..++.+|++||||+|...+..++++.++-+. +|.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 445789999999999999998888777 67788899999999999999999999888888776442 676654333
No 98
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.14 E-value=5.2e-05 Score=64.30 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=100.9
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCC-------
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG------- 76 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~------- 76 (221)
|++.|.-+|.-++++.-.+|..++. -.+-|.+.+...|+-|+..|++.++++.+++..-
T Consensus 311 T~d~LftlFgvYGdVqRVkil~nkk--------------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 311 TPDVLFTLFGVYGDVQRVKILYNKK--------------DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred chhHHHHHHhhhcceEEEEeeecCC--------------cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 5667777777777766555555433 2378999999999999999999999987732210
Q ss_pred --C---CC--------------------C----CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcc
Q 027630 77 --R---GE--------------------S----SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHR 127 (221)
Q Consensus 77 --~---~~--------------------~----~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~ 127 (221)
+ .+ . --++..+|.+.|+|.+++|++|+..|..-|-........ ++.+
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~ 452 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDR 452 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCc
Confidence 0 00 0 013456899999999999999999999888654442221 2234
Q ss_pred eEEEEEEcCHHHHHHHHhhCC--ccC-CeEEEEEecCC
Q 027630 128 GFGFVTFAEEVVADRVSRRSH--EIC-GQQVAIDSATP 162 (221)
Q Consensus 128 g~afV~f~~~~~a~~al~~~~--~i~-g~~l~V~~a~~ 162 (221)
-+|++.+.+.+.|..|+..+| .+. +.-|+|.+++.
T Consensus 453 kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 453 KMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 599999999999999986554 554 55899999874
No 99
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.14 E-value=0.0001 Score=62.63 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=64.4
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh--CCccCCeEEEEEecC
Q 027630 85 GKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SHEICGQQVAIDSAT 161 (221)
Q Consensus 85 ~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~--~~~i~g~~l~V~~a~ 161 (221)
...|.|.||.++ +|.+.|..+|..||.|..|+|+.++. --|+|++.+...|+-|+.. .+.|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 467889999776 89999999999999999999998743 4699999999999999874 468999999999997
Q ss_pred CC
Q 027630 162 PL 163 (221)
Q Consensus 162 ~~ 163 (221)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 43
No 100
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.12 E-value=4.5e-06 Score=62.48 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=51.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.++++|+++|++++.|....|..++.+. ++++||||.|.+.++|++|++.+++..+.+.
T Consensus 46 ~te~~L~~~F~~~G~I~~v~i~~d~~tg---------~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr 104 (144)
T PLN03134 46 TDDASLRDAFAHFGDVVDAKVIVDRETG---------RSRGFGFVNFNDEGAATAAISEMDGKELNGR 104 (144)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEecCCCC---------CcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 5789999999999999988888887776 7889999999999999999999887554443
No 101
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.10 E-value=2.2e-05 Score=63.46 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=87.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC-----
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR----- 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~----- 77 (221)
-++++|.+.|.+++.+....+..++.+. ++++||||.|.+..++..|+..+++..+.+.+......
T Consensus 127 ~~~~~l~~~F~~~g~~~~~~~~~d~~~~---------~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~ 197 (306)
T COG0724 127 VTEEDLRELFKKFGPVKRVRLVRDRETG---------KSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQ 197 (306)
T ss_pred CCHHHHHHHHHhcCceeEEEeeeccccC---------ccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccc
Confidence 3688999999999999888888887555 78899999999999999999999877666655322221
Q ss_pred --------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCC
Q 027630 78 --------------------GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK 122 (221)
Q Consensus 78 --------------------~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~ 122 (221)
..........+++.+++..++...+...|..++.+..+.+.....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 198 PRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred cccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 011234567899999999999999999999999997777665543
No 102
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.05 E-value=7.8e-05 Score=62.82 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=99.3
Q ss_pred CCChHHHHHHhccccccc---CceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHh----------------
Q 027630 2 PKDQDSVENLMVDTHELG---GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL---------------- 62 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~---g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~---------------- 62 (221)
..++.++...|....-|. ...+.|.+... +-.|-+||.|...+.|+.|+...
T Consensus 172 dat~~dVv~FF~~~cpv~~g~egvLFV~rpdg---------rpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTa 242 (508)
T KOG1365|consen 172 DATALDVVEFFGPPCPVTGGTEGVLFVTRPDG---------RPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTA 242 (508)
T ss_pred CcchHHHHHhcCCCCcccCCccceEEEECCCC---------CcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhH
Confidence 345677777786422222 24556665444 66788999999999999997763
Q ss_pred -------CCCC---cCCCCCCC----CCC-CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEE--EEeecCCCCC
Q 027630 63 -------GAPT---LYDHPGSF----YGR-GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILD--VYVPKDPKRT 124 (221)
Q Consensus 63 -------~~~~---~~~~~~~~----~~~-~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~--v~~~~~~~tg 124 (221)
++.. |...+... -+. -.+......+|-+++||.+.+.++|.++|..|.. |.. |.++.+ ..|
T Consensus 243 aEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qG 321 (508)
T KOG1365|consen 243 AEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQG 321 (508)
T ss_pred HHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCC
Confidence 2211 22211110 011 1122333668999999999999999999999873 333 556555 568
Q ss_pred CcceEEEEEEcCHHHHHHHHhhCC-cc-CCeEEEEEecC
Q 027630 125 GHRGFGFVTFAEEVVADRVSRRSH-EI-CGQQVAIDSAT 161 (221)
Q Consensus 125 ~~~g~afV~f~~~~~a~~al~~~~-~i-~g~~l~V~~a~ 161 (221)
+..|-|||+|.+.+.|.+|....| .+ ..+.|.|--+.
T Consensus 322 rPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 322 RPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 889999999999999999876544 33 46777776543
No 103
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.04 E-value=2.8e-05 Score=51.82 Aligned_cols=66 Identities=21% Similarity=0.506 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhhccC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 86 KKIFVGRLPQEATAED----LRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~----l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
..|||.|||.+.+... |++++..|| +|.+|. .+.|+|.|.+.+.|.+|.+.+. .+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988765 456667887 666652 3579999999999999997654 7889999999
Q ss_pred ecC
Q 027630 159 SAT 161 (221)
Q Consensus 159 ~a~ 161 (221)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 884
No 104
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=5.1e-06 Score=75.98 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=88.0
Q ss_pred ccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeec
Q 027630 40 RMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPK 119 (221)
Q Consensus 40 ~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~ 119 (221)
+-+|.+|+.|..+..+.+|++..-...+ ....|+|.|+|+..|.+.|+.+++++|.+.++.++.
T Consensus 707 ~~rG~~Y~~F~~~~~~~aaV~f~d~~~~----------------gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt 770 (881)
T KOG0128|consen 707 RFRGKAYVEFLKPEHAGAAVAFRDSCFF----------------GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT 770 (881)
T ss_pred ccccceeeEeecCCchhhhhhhhhhhhh----------------hhhhhheeCCCCCCchHHHHhhccccCCccccchhh
Confidence 4469999999999999999887544222 146899999999999999999999999999998877
Q ss_pred CCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCCC
Q 027630 120 DPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLD 164 (221)
Q Consensus 120 ~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~~ 164 (221)
. ..|+++|-|+|.|.++.++.+++.... .+....+.|..+.|..
T Consensus 771 ~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 771 V-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred h-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 6 558899999999999999999986544 4555566777766643
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.90 E-value=2.3e-05 Score=72.20 Aligned_cols=142 Identities=13% Similarity=0.162 Sum_probs=101.6
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC-CCCCCCCCCCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG-SFYGRGESSQR 83 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ 83 (221)
+.+++.+|.+.+.++ .|.+|..... +..-|+|+.|.+...+-.|...+.++.+..... ...+.. ...
T Consensus 386 eseiR~af~e~gkve--~VDiKtP~~~--------~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~--kst 453 (975)
T KOG0112|consen 386 ESEIRPAFDESGKVE--EVDIKTPHIK--------TESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP--KST 453 (975)
T ss_pred hhhhhhhhhhhcccc--ccccccCCCC--------cccchhhhhhhccccCcccchhhcCCccccCccccccccc--ccc
Confidence 455667777666665 4444432111 345688999988888888888887766655432 222211 345
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccC--CeEEEEEe
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC--GQQVAIDS 159 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~--g~~l~V~~ 159 (221)
..+.+||++|..|+....|...|..||.|..|.+-. ..-||+|.|++...++.|+..+. .|. .+.|+|.+
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 668999999999999999999999999999987743 23499999999999999986443 443 46789999
Q ss_pred cCCCC
Q 027630 160 ATPLD 164 (221)
Q Consensus 160 a~~~~ 164 (221)
+.+..
T Consensus 528 a~~~~ 532 (975)
T KOG0112|consen 528 ASPPG 532 (975)
T ss_pred ccCCC
Confidence 87543
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.81 E-value=3.1e-05 Score=54.67 Aligned_cols=67 Identities=22% Similarity=0.397 Sum_probs=41.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-------ccCCeEEEEE
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-------EICGQQVAID 158 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-------~i~g~~l~V~ 158 (221)
+.|.|.+++..++.++|++.|++|+.|..|.+.... --|||.|.+.+.|+.|+.... .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568899999999999999999999999999987642 279999999999999985332 4455555444
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.78 E-value=0.0025 Score=53.83 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=89.7
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCC--CC------cCCCC--CCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA--PT------LYDHP--GSF 74 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~--~~------~~~~~--~~~ 74 (221)
+.++-+++++++.|. .|. +.| .+..+-|+|++...|.+++...-. .. +.+.. ...
T Consensus 45 eadl~eal~~fG~i~--yvt---~~P----------~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i 109 (494)
T KOG1456|consen 45 EADLVEALSNFGPIA--YVT---CMP----------HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCI 109 (494)
T ss_pred hhHHHHHHhcCCceE--EEE---ecc----------ccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhh
Confidence 556677777776653 111 122 224567889988888887665322 11 11111 011
Q ss_pred CCCCCCCCCCCCeEEEcCCCC--CCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc
Q 027630 75 YGRGESSQRIGKKIFVGRLPQ--EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 150 (221)
Q Consensus 75 ~~~~~~~~~~~~~l~V~nLp~--~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i 150 (221)
.....++....+.|.+.-|.+ .+|-+-|..+....|+|..|.|.+. ++. -|.|+|++.+.|++|..+++ .|
T Consensus 110 ~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 110 ERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred ccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccc
Confidence 111233334445555554543 4889999999999999999988764 332 58999999999999987665 55
Q ss_pred -CC-eEEEEEecCCCC
Q 027630 151 -CG-QQVAIDSATPLD 164 (221)
Q Consensus 151 -~g-~~l~V~~a~~~~ 164 (221)
.| ..|+|++|+|.+
T Consensus 185 YsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 185 YSGCCTLKIEYAKPTR 200 (494)
T ss_pred cccceeEEEEecCcce
Confidence 34 589999999864
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00021 Score=62.42 Aligned_cols=65 Identities=26% Similarity=0.533 Sum_probs=50.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCC---CCcce---EEEEEEcCHHHHHHHHhhC
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR---TGHRG---FGFVTFAEEVVADRVSRRS 147 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~t---g~~~g---~afV~f~~~~~a~~al~~~ 147 (221)
..-.++||||+||++++|+.|...|..||.+ .|.++..... -.++| |+|+.|+++.++...|...
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3456899999999999999999999999976 5666632211 12566 9999999999888776543
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00083 Score=58.77 Aligned_cols=66 Identities=32% Similarity=0.438 Sum_probs=60.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ 146 (221)
.-.+.+|||||+||.-++.++|-.+|. .||.|..+-|-.|++-..++|-+=|+|.+..+-.+||..
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 345678999999999999999999998 899999999999988888999999999999999999863
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.67 E-value=0.0019 Score=54.53 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 83 RIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 83 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
.+++.+.|-+|... ++-+.|-.+|..||.|+.|++++. ..|-|.|++.+...+++|+..++ .+.|.+|.|..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-----k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-----KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-----ccceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 35677899999776 677889999999999999999986 34689999999999999998665 66788888887
Q ss_pred cC
Q 027630 160 AT 161 (221)
Q Consensus 160 a~ 161 (221)
++
T Consensus 360 Sk 361 (494)
T KOG1456|consen 360 SK 361 (494)
T ss_pred cc
Confidence 76
No 111
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=97.67 E-value=5.7e-05 Score=58.66 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=52.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.++++|..+|++.+.|.+.-|..++.+. .+++|+||-|.+..+|+.|+++|.+.+|.+.
T Consensus 25 Tspd~LrrvFekYG~vgDVyIPrdr~Tr---------~sRgFaFVrf~~k~daedA~damDG~~ldgR 83 (256)
T KOG4207|consen 25 TSPDDLRRVFEKYGRVGDVYIPRDRYTR---------QSRGFAFVRFHDKRDAEDALDAMDGAVLDGR 83 (256)
T ss_pred CCHHHHHHHHHHhCcccceecccccccc---------cccceeEEEeeecchHHHHHHhhcceeeccc
Confidence 4689999999999999999888888877 8899999999999999999999988766554
No 112
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.60 E-value=0.00024 Score=43.62 Aligned_cols=52 Identities=25% Similarity=0.530 Sum_probs=41.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHH
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 144 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al 144 (221)
+.|-|.+.+.+..+. +...|..||+|.++.+.. ..-+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 457788888776654 455888999999998862 2348999999999999985
No 113
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.51 E-value=0.00011 Score=58.24 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=46.0
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHh
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 62 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~ 62 (221)
..|.+++-|+.+++|....|+.++.+. +|+|||||.|.+.++|.+|..-.
T Consensus 25 ~~~~l~~yFeqfGeI~eavvitd~~t~---------rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 25 HKETLRRYFEQFGEIVEAVVITDKNTG---------RSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred chHHHHHHHHHhCceEEEEEEeccCCc---------cccceeeEEeecHHHHHHHhcCC
Confidence 568899999999999999999999999 89999999999999999997764
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=97.51 E-value=0.00017 Score=46.90 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=40.7
Q ss_pred hHHHHHHhc----ccccccCce-EeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 5 QDSVENLMV----DTHELGGST-VVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 5 ~~~~~~~~~----~~~~i~g~~-v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
++++...|+ .++.|.... |.+++.+. ...+++++||.|.+..+|..|+..|++..+.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~-------~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY-------ENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC-------CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 567888888 455554332 34443330 016789999999999999999999988655443
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.48 E-value=7.7e-05 Score=58.43 Aligned_cols=89 Identities=24% Similarity=0.261 Sum_probs=73.5
Q ss_pred ceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCCCeEEEcC----CCCCCCHHHHHHHhhccCCeEEEEeec
Q 027630 44 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGR----LPQEATAEDLRRYFSRFGRILDVYVPK 119 (221)
Q Consensus 44 ~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~te~~l~~~F~~~G~i~~v~~~~ 119 (221)
|+||+|....+..-|++.+|+..+++.+.. .+++.|+ |...++++.+...|+.-+.+..+++.+
T Consensus 51 Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q------------~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~ 118 (267)
T KOG4454|consen 51 FAYVFFPNENSVQLAGQLENGDDLEEDEEQ------------RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPT 118 (267)
T ss_pred eeeeecccccchhhhhhhcccchhccchhh------------cccccCCCcchhhhhcchhhheeeecccCCCCCccccc
Confidence 999999999999999999999999888543 3455555 667789999999999999999999998
Q ss_pred CCCCCCcceEEEEEEcCHHHHHHHHh
Q 027630 120 DPKRTGHRGFGFVTFAEEVVADRVSR 145 (221)
Q Consensus 120 ~~~tg~~~g~afV~f~~~~~a~~al~ 145 (221)
+.. ++++-+.|+++.-....-.++.
T Consensus 119 ~~d-~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 119 DND-GRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred ccc-CCccCccchhhhhhhcCcHHhh
Confidence 855 7788899998876665555553
No 116
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00017 Score=56.60 Aligned_cols=63 Identities=8% Similarity=0.126 Sum_probs=51.2
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG 76 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 76 (221)
+..|.++|=.++.|.+.++..+..+. +-++||||+|.-.++|++|++.||...|++..+++.-
T Consensus 24 ekvLhaAFIPFGDI~dIqiPlDyesq---------kHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 24 EKVLHAAFIPFGDIKDIQIPLDYESQ---------KHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred HHHHHhccccccchhhcccccchhcc---------cccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45566666678888888887776665 6789999999999999999999999988887765543
No 117
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00022 Score=56.81 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=51.8
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
++++|+++|..++-|.-.-|.+++.++ .++||+||.|.+.+.|++|++.||+.-..+.
T Consensus 202 ~E~dL~eLf~~fg~i~rvylardK~TG---------~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L 259 (270)
T KOG0122|consen 202 REDDLEELFRPFGPITRVYLARDKETG---------LSKGFAFVTFESRDDAARAIADLNGYGYDNL 259 (270)
T ss_pred ChhHHHHHhhccCccceeEEEEccccC---------cccceEEEEEecHHHHHHHHHHccCcccceE
Confidence 578999999999999888889998888 8899999999999999999999998665554
No 118
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.28 E-value=0.00024 Score=51.60 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=56.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
++++++...|.++++|-...+..++-++ -.+||+.|+|++...|++|+.++|+..+.+.+..+
T Consensus 84 atEedi~d~F~dyGeiKNihLNLDRRtG---------y~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 84 ATEEDIHDKFADYGEIKNIHLNLDRRTG---------YVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred hhHHHHHHHHhhcccccceeeccccccc---------cccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 5789999999999999999999999888 78899999999999999999999998888876543
No 119
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.26 E-value=0.00047 Score=44.13 Aligned_cols=56 Identities=5% Similarity=0.153 Sum_probs=45.5
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
++++|.+.|++++.|....+..+ ... +.+++|||.|.+.++|..|+..+++..+.+
T Consensus 11 t~~~l~~~f~~~g~i~~~~~~~~-~~~---------~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 11 TEEELRDFFSQFGKIESIKVMRN-SSG---------KSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp SHHHHHHHHHTTSTEEEEEEEEE-TTS---------SEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CHHHHHHHHHHhhhccccccccc-ccc---------cccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 57899999999999976666665 222 678999999999999999999988765544
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.17 E-value=0.0026 Score=53.89 Aligned_cols=120 Identities=19% Similarity=0.113 Sum_probs=74.1
Q ss_pred cCCceeEEEeehhhHHHHHHHh-CCCCcCCCCCCCCCCCC-------------C----CCCCCCeEEEcCCCCCCCHHHH
Q 027630 41 MSHGGYGAYNAYISAATRYAAL-GAPTLYDHPGSFYGRGE-------------S----SQRIGKKIFVGRLPQEATAEDL 102 (221)
Q Consensus 41 ~~~~g~~~~~~~~~a~~a~~~~-~~~~~~~~~~~~~~~~~-------------~----~~~~~~~l~V~nLp~~~te~~l 102 (221)
.+.+|.+...+.+...+.++.. ....+....+..++... . +...--.|-+++||.++++.++
T Consensus 99 grRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dV 178 (508)
T KOG1365|consen 99 GRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDV 178 (508)
T ss_pred hccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHH
Confidence 3456666666666666666653 22333333333332211 1 1122335677899999999999
Q ss_pred HHHhhcc----CCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-ccCCeEEEEEecC
Q 027630 103 RRYFSRF----GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSAT 161 (221)
Q Consensus 103 ~~~F~~~----G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~l~V~~a~ 161 (221)
.++|.+- +..+.|.++.. .+|+..|-|||.|..+++|+.||.+.. .|.-|.|.+-.+.
T Consensus 179 v~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 179 VEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred HHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999632 23455555544 457788999999999999999997543 4555555554443
No 121
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=97.10 E-value=0.0005 Score=56.95 Aligned_cols=57 Identities=7% Similarity=0.031 Sum_probs=47.3
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
+-+|..+|.+++.|-+++|+-+.- -|+|||||.|++..+|++|.+++++.+..+..+
T Consensus 110 dpDL~aMF~kfG~VldVEIIfNER-----------GSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 110 DPDLRAMFEKFGKVLDVEIIFNER-----------GSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred CccHHHHHHhhCceeeEEEEeccC-----------CCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 347889999999988888876632 578999999999999999999998877766554
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.08 E-value=0.0018 Score=58.67 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=60.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEeecCCCCCCcceEEEEEEcCHHHHHHHHh--hCCccCCeEEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQVAID 158 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~~~tg~~~g~afV~f~~~~~a~~al~--~~~~i~g~~l~V~ 158 (221)
......|||..||..+++.++.++|...-.|++ |.|... -+++.++.|||.|..++++..|+. ..+.+..+.|+|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 456788999999999999999999998887877 555444 567788899999999888777754 3335666777776
Q ss_pred e
Q 027630 159 S 159 (221)
Q Consensus 159 ~ 159 (221)
-
T Consensus 510 s 510 (944)
T KOG4307|consen 510 S 510 (944)
T ss_pred c
Confidence 4
No 123
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.06 E-value=0.0009 Score=57.32 Aligned_cols=68 Identities=19% Similarity=0.329 Sum_probs=55.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecC---CCCCC----------cceEEEEEEcCHHHHHHHHhh
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKD---PKRTG----------HRGFGFVTFAEEVVADRVSRR 146 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~---~~tg~----------~~g~afV~f~~~~~a~~al~~ 146 (221)
....+.++|.+-|||.+-.-+.|.++|+.+|.|..|+|... +.+.. .+-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34568899999999999888999999999999999999766 32221 256899999999999999764
Q ss_pred C
Q 027630 147 S 147 (221)
Q Consensus 147 ~ 147 (221)
+
T Consensus 306 ~ 306 (484)
T KOG1855|consen 306 L 306 (484)
T ss_pred h
Confidence 4
No 124
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.05 E-value=0.036 Score=46.54 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=96.6
Q ss_pred ChHHHHHHhccccccc----CceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC----
Q 027630 4 DQDSVENLMVDTHELG----GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY---- 75 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~----g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~---- 75 (221)
|.++..++|.+.+.|. .-+..+|-.. ++. ..-+|-|-+.|-..++..-|+..|....+.+...++.
T Consensus 147 T~dE~~~~~sKcGiI~~d~~t~epk~KlYr--d~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkf 220 (382)
T KOG1548|consen 147 TVDEFAEVMSKCGIIMRDPQTGEPKVKLYR--DNQ----GKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKF 220 (382)
T ss_pred cHHHHHHHHHhcceEeccCCCCCeeEEEEe--cCC----CCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhh
Confidence 4667777777655432 2222333221 111 2456888899999999999998885544443321000
Q ss_pred ----------------------------------C-CCCCCCCCCCeEEEcCCC--C--CCC-------HHHHHHHhhcc
Q 027630 76 ----------------------------------G-RGESSQRIGKKIFVGRLP--Q--EAT-------AEDLRRYFSRF 109 (221)
Q Consensus 76 ----------------------------------~-~~~~~~~~~~~l~V~nLp--~--~~t-------e~~l~~~F~~~ 109 (221)
- .+.......++|.+.||= . ..+ .++|.+-.++|
T Consensus 221 q~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~ 300 (382)
T KOG1548|consen 221 QMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKF 300 (382)
T ss_pred hhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 0 012223456788888882 1 122 24566778899
Q ss_pred CCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCC
Q 027630 110 GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 163 (221)
Q Consensus 110 G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~ 163 (221)
|.|..|.|.-. .+.|.+-|.|.+.+.|..||+.++ .+.|+.|......-+
T Consensus 301 G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 301 GQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred CCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 99999877422 267899999999999999998776 789999987765533
No 125
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.03 E-value=0.0019 Score=53.80 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=57.6
Q ss_pred CCCeEEEcCCCCCCCHHH----H--HHHhhccCCeEEEEeecCCCCCC-cce--EEEEEEcCHHHHHHHHhhC--CccCC
Q 027630 84 IGKKIFVGRLPQEATAED----L--RRYFSRFGRILDVYVPKDPKRTG-HRG--FGFVTFAEEVVADRVSRRS--HEICG 152 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~----l--~~~F~~~G~i~~v~~~~~~~tg~-~~g--~afV~f~~~~~a~~al~~~--~~i~g 152 (221)
...-+||-+||+.+..++ | .++|.+||.|..|.|.+...+.. ..+ -.||+|.+.++|.+||... ..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 446689999998866554 3 58999999999988765431111 112 2399999999999999744 47899
Q ss_pred eEEEEEecC
Q 027630 153 QQVAIDSAT 161 (221)
Q Consensus 153 ~~l~V~~a~ 161 (221)
+.|+..+..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999887765
No 126
>smart00360 RRM RNA recognition motif.
Probab=97.00 E-value=0.0021 Score=40.42 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=42.5
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCc
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 67 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~ 67 (221)
+++++...|+.++.|....+..++.+. ++++++||.|.+..+|..|+..++...+
T Consensus 9 ~~~~l~~~f~~~g~v~~~~i~~~~~~~---------~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 9 TEEELRELFSKFGKIESVRLVRDKDTG---------KSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CHHHHHHHHHhhCCEeEEEEEeCCCCC---------CCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 578899999988877655555443322 6779999999999999999998886444
No 127
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.004 Score=55.25 Aligned_cols=76 Identities=21% Similarity=0.376 Sum_probs=60.2
Q ss_pred CCCCeEEEcCCCCCCCH------HHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc-CCe
Q 027630 83 RIGKKIFVGRLPQEATA------EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-CGQ 153 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te------~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i-~g~ 153 (221)
.-...|+|.|+|.--.. .-|..+|+++|+|....++.+..+| .+||.|++|.+..+|+.|+++++ .| ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44578999999875332 2467899999999999999887766 99999999999999999998654 44 456
Q ss_pred EEEEEe
Q 027630 154 QVAIDS 159 (221)
Q Consensus 154 ~l~V~~ 159 (221)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666654
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.96 E-value=0.0029 Score=57.42 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=60.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 87 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
.|-|.|+|++++-++|.++|..|-.+-.-.+++-...|...|-|.|.|++.++|.+|...+. .|..+.|.+.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 67899999999999999999999866443334444678899999999999999999987554 78888877754
No 129
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.78 E-value=0.008 Score=41.93 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=48.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEE-eecCC------CCCCcceEEEEEEcCHHHHHHHHh-hCCccCCe-EE
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVY-VPKDP------KRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQ-QV 155 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~-~~~~~------~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~-~l 155 (221)
..-|.|-+.|+. ....|.+.|++||.|.+.. +.++. ..-....+-.|+|+++.+|.+||. ++..|.|. .+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 456777789887 5567788899999997774 11110 001134589999999999999996 56677765 44
Q ss_pred EEEecC
Q 027630 156 AIDSAT 161 (221)
Q Consensus 156 ~V~~a~ 161 (221)
-|.+.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 566664
No 130
>PLN03213 repressor of silencing 3; Provisional
Probab=96.72 E-value=0.0021 Score=56.22 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=46.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeeh--hhHHHHHHHhCCCCcCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAY--ISAATRYAALGAPTLYDHPGS 73 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~a~~a~~~~~~~~~~~~~~~ 73 (221)
-++++|.++|.+++.|....|+ |.+. ++||||.|.+. .++.+|+..|++...-+..+.
T Consensus 22 VTEDDLravFSeFGsVkdVEIp--RETG-----------RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 22 VGRDDLLKIFSPMGTVDAVEFV--RTKG-----------RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred CCHHHHHHHHHhcCCeeEEEEe--cccC-----------CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 3689999999999999888887 2222 69999999987 689999999987766665543
No 131
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=96.67 E-value=0.0031 Score=40.51 Aligned_cols=54 Identities=6% Similarity=0.118 Sum_probs=41.3
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCc
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 67 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~ 67 (221)
+++++.+.|..++.|....+..++. . +.+++|||.|.+.++|..|+..+++..+
T Consensus 11 ~~~~l~~~f~~~g~v~~v~~~~~~~-~---------~~~~~a~v~f~~~~~a~~al~~~~~~~~ 64 (70)
T PF14259_consen 11 TEEDLRNFFSRFGPVEKVRLIKNKD-G---------QSRGFAFVEFSSEEDAKRALELLNGKEI 64 (70)
T ss_dssp -HHHHHHHCTTSSBEEEEEEEESTT-S---------SEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CHHHHHHHHHhcCCcceEEEEeeec-c---------ccCCEEEEEeCCHHHHHHHHHHCCCcEE
Confidence 5788888888877776555554433 3 6789999999999999999999875444
No 132
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=96.60 E-value=0.0036 Score=47.60 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=45.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
++..+|+.+|..++.|..+||... .| +|+||+|+..-+|+.|+..|++..+-+.
T Consensus 22 a~k~eLE~~F~~yG~lrsvWvArn--PP------------GfAFVEFed~RDA~DAvr~LDG~~~cG~ 75 (195)
T KOG0107|consen 22 ATKRELERAFSKYGPLRSVWVARN--PP------------GFAFVEFEDPRDAEDAVRYLDGKDICGS 75 (195)
T ss_pred cchHHHHHHHHhcCcceeEEEeec--CC------------CceEEeccCcccHHHHHhhcCCccccCc
Confidence 457899999999999998888863 44 8999999999999999999988655443
No 133
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.57 E-value=0.00043 Score=63.76 Aligned_cols=105 Identities=21% Similarity=0.142 Sum_probs=75.3
Q ss_pred cCCceeEEEeehhhHHHHHHHhCCCCcCCCC-----CCCCCC-----CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccC
Q 027630 41 MSHGGYGAYNAYISAATRYAALGAPTLYDHP-----GSFYGR-----GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFG 110 (221)
Q Consensus 41 ~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G 110 (221)
+..++++.+..+.++++|....++....... .+.... .+.......++||.||+..+.+.+|...|..++
T Consensus 613 ~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~ 692 (881)
T KOG0128|consen 613 EQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSG 692 (881)
T ss_pred ccchhhhhhccccchhhcccccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccc
Confidence 3347788888888888886664332211111 111110 011113446789999999999999999999999
Q ss_pred CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh
Q 027630 111 RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145 (221)
Q Consensus 111 ~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 145 (221)
.+..+++.-...+++.+|.||+.|...+++.+||.
T Consensus 693 ~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 693 TIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred hhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 99888877666788899999999999999999874
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.54 E-value=0.0032 Score=50.60 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=51.3
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
+.+.+.++|+++....+.+|+.++-+. ++++||||.|.+.+++..|+..|++.-.-..|
T Consensus 203 nd~vl~raf~Kfpsf~~akviRdkRTg---------KSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 203 NDDVLARAFKKFPSFQKAKVIRDKRTG---------KSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred cHHHHHHHHHhccchhhcccccccccc---------ccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 568899999999999999999988888 89999999999999999999999875554444
No 135
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.49 E-value=0.0043 Score=49.85 Aligned_cols=61 Identities=31% Similarity=0.418 Sum_probs=52.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 147 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~ 147 (221)
..|||.||+..++.+.|.+.|+.||.|....+..| ..++..+-++|.|...-.+.+|+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHh
Confidence 78999999999999999999999999988766666 45677888999999998888887543
No 136
>PLN03120 nucleic acid binding protein; Provisional
Probab=96.38 E-value=0.0059 Score=49.73 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=47.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
.++++|++.|..+++|....|..++. .++||||.|.+..+|..|+. |++..+.+.+...
T Consensus 16 tTE~dLrefFS~~G~I~~V~I~~d~~------------~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~V 74 (260)
T PLN03120 16 ATERDIKEFFSFSGDIEYVEMQSENE------------RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTI 74 (260)
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCC------------CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEE
Confidence 46899999999999998777765431 35899999999999999995 8888888777433
No 137
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.28 E-value=0.031 Score=37.34 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=41.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 147 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~ 147 (221)
.....||. +|.++...+|.++|+.||.| .|.++.|. -|||...+.+.|..++...
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHH
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHh
Confidence 34556666 99999999999999999987 77777762 6999999999999887533
No 138
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.27 E-value=0.039 Score=34.88 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=44.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc---CCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRF---GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ 146 (221)
...+|+|.++. +++.++|+.+|..| .....|.++.|. -|-|.|.+.+.|.+||.+
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 35689999985 57888999999998 135688898874 488999999999999864
No 139
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.21 E-value=0.0044 Score=49.80 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=54.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCC--------CCcc----eEEEEEEcCHHHHHHHHhhC--Cc
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR--------TGHR----GFGFVTFAEEVVADRVSRRS--HE 149 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~t--------g~~~----g~afV~f~~~~~a~~al~~~--~~ 149 (221)
..-.||+++||+.+....|+++|+.||.|-.|.|.....+ +.++ --+.|+|.+...|..+...+ +.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988665443 2222 23678999999999886544 36
Q ss_pred cCCe
Q 027630 150 ICGQ 153 (221)
Q Consensus 150 i~g~ 153 (221)
|.|+
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 6665
No 140
>PLN03121 nucleic acid binding protein; Provisional
Probab=96.20 E-value=0.0088 Score=48.07 Aligned_cols=57 Identities=11% Similarity=0.162 Sum_probs=46.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
.++++|++.|..+++|....|..+. +..++|||.|.+..+++.|+ .|++..+.+.+.
T Consensus 17 tTE~dLrefFS~~G~I~~V~I~~D~------------et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I 73 (243)
T PLN03121 17 ATEKDVYDFFSHCGAIEHVEIIRSG------------EYACTAYVTFKDAYALETAV-LLSGATIVDQRV 73 (243)
T ss_pred CCHHHHHHHHHhcCCeEEEEEecCC------------CcceEEEEEECCHHHHHHHH-hcCCCeeCCceE
Confidence 4789999999999999888877552 34479999999999999998 677777777764
No 141
>smart00362 RRM_2 RNA recognition motif.
Probab=96.19 E-value=0.011 Score=37.20 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=41.0
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 68 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~ 68 (221)
+.+++.+.|++++.+....+..+. . .+++++|+.|.+..+|..|+..+++..+.
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~--~---------~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDT--G---------KSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCC--C---------CCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 578899999988877644444332 1 56789999999999999999988765443
No 142
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.12 E-value=0.028 Score=41.75 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=43.3
Q ss_pred HHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEecCCC
Q 027630 101 DLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPL 163 (221)
Q Consensus 101 ~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~a~~~ 163 (221)
+|.+.|..||.+.=+++..+ .-.|+|.+-.+|.+|+. .+..++|+.|.|+...|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 67788899999888888764 57999999999999996 667999999999987654
No 143
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.11 E-value=0.0041 Score=53.37 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=58.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC---ccCCeEEEEEecCC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---EICGQQVAIDSATP 162 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~---~i~g~~l~V~~a~~ 162 (221)
.++|++||.+.++..+|+.+|..--.-..-.++. ..||+||...+...|.+|++.+. ++.|+++.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5799999999999999999997542111111222 34799999999999999998554 78999999999988
Q ss_pred CCCCC
Q 027630 163 LDDAG 167 (221)
Q Consensus 163 ~~~~~ 167 (221)
+..+.
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 76543
No 144
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=96.05 E-value=0.013 Score=48.13 Aligned_cols=59 Identities=8% Similarity=0.070 Sum_probs=50.9
Q ss_pred CCChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 2 PKDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
..+++.|++.|+.++.|.-..|+.+..+. +++||+||+|+...+..+||....+.++.+
T Consensus 112 dT~EskLrreF~~YG~IkrirlV~d~vTg---------kskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 112 DTSESKLRREFEKYGPIKRIRLVRDKVTG---------KSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred cccHHHHHHHHHhcCcceeEEEeeecccC---------CccceEEEEeccHHHHHHHHHhccCceecC
Confidence 35788999999999999988889888888 889999999999999999999976554433
No 145
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=96.02 E-value=0.016 Score=41.94 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=48.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
.++|.+.++|...++|--..+-+++.+- ..=|||||+|...++|+.|+.-+++..|.+.|++.
T Consensus 48 ttEEqiyELFs~cG~irriiMGLdr~kk---------tpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 48 TTEEQIYELFSKCGDIRRIIMGLDRFKK---------TPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred ecHHHHHHHHHhccchheeEeccccCCc---------CccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 3688899999988887644444554433 34599999999999999999999998888877543
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.87 E-value=0.0015 Score=55.97 Aligned_cols=119 Identities=11% Similarity=0.103 Sum_probs=85.2
Q ss_pred cCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEe-ec
Q 027630 41 MSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYV-PK 119 (221)
Q Consensus 41 ~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~-~~ 119 (221)
..+|+||......-|..|+..+++.....-.......+-+.....+++-|.|+|+...++.|..++..||.++.|.. ..
T Consensus 36 k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt 115 (584)
T KOG2193|consen 36 KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT 115 (584)
T ss_pred ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc
Confidence 35889999999999999999987754433333233333333455677999999999999999999999999998854 44
Q ss_pred CCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCC
Q 027630 120 DPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 163 (221)
Q Consensus 120 ~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~ 163 (221)
+++|- ..-|+|...+.+..||..++ .+....+.|.|--..
T Consensus 116 ~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 116 DSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred chHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 44332 33467778888888886543 777777777765433
No 147
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=95.87 E-value=0.012 Score=36.14 Aligned_cols=49 Identities=8% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 8 VENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 8 ~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
|.+.|+++++|....+..+. .+++||.|.+.++|..|+..+++..+.+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------------RGFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------------TTEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred ChHHhCCcccEEEEEEEeCC--------------CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 45778888887644443322 37899999999999999999988765544
No 148
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=95.66 E-value=0.019 Score=50.44 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=53.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-+++.|..+|.+.+.|...+++.++.++ +.+||||++|...+.++.|+..+|+....+.+.
T Consensus 30 ~se~~l~~~~~~~g~v~s~~~v~D~~tG---------~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 30 GSEEQLLSIFSGVGPVLSFRLVYDRETG---------KPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred ccHHHHHHHHhccCccceeeecccccCC---------CcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 3578899999988888889999998888 788999999999999999999998877766663
No 149
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.60 E-value=0.017 Score=51.62 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=58.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-----ccCCeE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFS-RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-----EICGQQ 154 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-----~i~g~~ 154 (221)
.....+.|||.||-.-.|.-+|+.++. .+|.|++. ||-. .+..|||.|.+.++|.+.+..+| .-+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 345678899999999999999999998 55566665 4432 45689999999999988877666 236678
Q ss_pred EEEEecC
Q 027630 155 VAIDSAT 161 (221)
Q Consensus 155 l~V~~a~ 161 (221)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888775
No 150
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=95.43 E-value=0.031 Score=43.64 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=34.8
Q ss_pred ccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCCCeEEEcCCCCC
Q 027630 40 RMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQE 96 (221)
Q Consensus 40 ~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~ 96 (221)
.|+|||||+|++.+-|.-|...||...+.+. -|.|.=||++
T Consensus 90 NSKgYAFVEFEs~eVA~IaAETMNNYLl~e~----------------lL~c~vmppe 130 (214)
T KOG4208|consen 90 NSKGYAFVEFESEEVAKIAAETMNNYLLMEH----------------LLECHVMPPE 130 (214)
T ss_pred CcCceEEEEeccHHHHHHHHHHhhhhhhhhh----------------eeeeEEeCch
Confidence 7999999999999999999999999877765 5556667776
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.30 E-value=0.03 Score=47.79 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=53.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCC---CCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEE
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK---RTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAID 158 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~---tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~ 158 (221)
..|-|.||.+.++.++++.+|...|+|.++.|..... .....-.|||-|.+...+..|-. ....+-++.|.|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 4889999999999999999999999999998765322 22244589999999988887742 2223444444443
No 152
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.83 E-value=0.097 Score=46.68 Aligned_cols=68 Identities=10% Similarity=0.249 Sum_probs=52.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh----hCCccCCeEEEE
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSR--FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR----RSHEICGQQVAI 157 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~--~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~----~~~~i~g~~l~V 157 (221)
..|.|.++-||..+.+++++.+|.. |-++.+|.+-.+. -=||+|++..+|+.|.+ ..++|-|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4577889999999999999999964 7788888876541 24999999999999854 234777777644
Q ss_pred E
Q 027630 158 D 158 (221)
Q Consensus 158 ~ 158 (221)
+
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 153
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.031 Score=47.11 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=50.0
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
+.++|+-+|+.|+.|.++.|+.++.+. -+..|+||+|++..+++.|+=.|......+
T Consensus 252 tDeDLeiIFSrFG~i~sceVIRD~ktg---------dsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 252 TDEDLEIIFSRFGKIVSCEVIRDRKTG---------DSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred cccchhhHHhhcccceeeeEEeccccc---------chhheeeeeecchhhHHHHHhhhcceeecc
Confidence 467899999999999999999999888 788999999999999999999986654433
No 154
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=94.54 E-value=0.11 Score=32.56 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=39.8
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCc
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 67 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~ 67 (221)
+++++...|+.++.|....+...... ..++++|+.|.+.++|..|+..++...+
T Consensus 12 ~~~~i~~~~~~~g~i~~~~~~~~~~~----------~~~~~~~v~f~s~~~a~~a~~~~~~~~~ 65 (74)
T cd00590 12 TEEDLRELFSKFGKVESVRIVRDKDT----------KSKGFAFVEFEDEEDAEKALEALNGKEL 65 (74)
T ss_pred CHHHHHHHHHhcCCEEEEEEeeCCCC----------CcceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 57888899988776654444433221 3568999999999999999998877543
No 155
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.51 E-value=0.31 Score=36.06 Aligned_cols=74 Identities=18% Similarity=0.125 Sum_probs=54.1
Q ss_pred CCCCCeEEEcCCCCCCC----HHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-ccCCeEEE
Q 027630 82 QRIGKKIFVGRLPQEAT----AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVA 156 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~l~ 156 (221)
..+..+|.|.=|..++. -..+...++.||+|.+|.+. .+--|.|.|.+..+|=+|+...+ ...|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 45567888876665543 23456667899999998764 34479999999999999987665 56777888
Q ss_pred EEecCC
Q 027630 157 IDSATP 162 (221)
Q Consensus 157 V~~a~~ 162 (221)
+.|-.+
T Consensus 156 CsWqqr 161 (166)
T PF15023_consen 156 CSWQQR 161 (166)
T ss_pred eecccc
Confidence 877654
No 156
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.20 E-value=0.024 Score=45.71 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=40.8
Q ss_pred ccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecC
Q 027630 108 RFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 161 (221)
Q Consensus 108 ~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~ 161 (221)
+||+|+++.|-.+.. -.-.|=+||.|..+++|++|+..++ -+.|++|...+..
T Consensus 92 kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred Hhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 899999886654321 2246778999999999999998665 7889998776653
No 157
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.12 E-value=0.18 Score=41.58 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=46.6
Q ss_pred HHHHHHHhhccCCeEEEEeecCCCCCCcce-EEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 99 AEDLRRYFSRFGRILDVYVPKDPKRTGHRG-FGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 99 e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g-~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
++++++.+.+||.|..|.|..++..-.... --||+|...++|.+|+-.++ .|.|+.+...+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 356778889999999998877654333333 36999999999999986554 778888766554
No 158
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.69 E-value=0.0045 Score=47.40 Aligned_cols=58 Identities=10% Similarity=0.109 Sum_probs=48.9
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
++.++-.+|+++++|.+..+++++.|+ +|+||||.-|+.--+..-|+..+|+..+.+.
T Consensus 48 tEgDil~VFSqyGe~vdinLiRDk~TG---------KSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 48 TEGDILCVFSQYGEIVDINLIRDKKTG---------KSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cCCcEEEEeeccCceEEEEEEecCCCC---------cccceEEEEecCccceEEEEeccCCceecce
Confidence 345666789999999999999999998 8999999999998888778888888766655
No 159
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.39 E-value=0.021 Score=53.43 Aligned_cols=64 Identities=17% Similarity=0.346 Sum_probs=52.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 145 (221)
......+||++||+..+++.+|+..|..+|.|.+|.|-.... +.--.|+||.|.+...+-.|+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~ 431 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKF 431 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccch
Confidence 455678999999999999999999999999999998865422 2234589999999888877764
No 160
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.98 E-value=0.18 Score=38.93 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=38.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEEeecCC-CC-CCcceEEEEEEcCHHHHHHHHhhC
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSR-FGRI---LDVYVPKDP-KR-TGHRGFGFVTFAEEVVADRVSRRS 147 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i---~~v~~~~~~-~t-g~~~g~afV~f~~~~~a~~al~~~ 147 (221)
....+|.|++||+.+||+++.+.++. ++.. ..+.-.... .. .....-|||.|.+.+++..-+...
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~ 75 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRF 75 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHC
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 44579999999999999999887776 5544 233211111 11 113356999999999977776543
No 161
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.95 E-value=0.046 Score=45.75 Aligned_cols=78 Identities=26% Similarity=0.374 Sum_probs=54.0
Q ss_pred CCCeEEEcCCCCCCCHH-HH--HHHhhccCCeEEEEeecCCC--CCC-cceEEEEEEcCHHHHHHHHhhCC--ccCCeEE
Q 027630 84 IGKKIFVGRLPQEATAE-DL--RRYFSRFGRILDVYVPKDPK--RTG-HRGFGFVTFAEEVVADRVSRRSH--EICGQQV 155 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~-~l--~~~F~~~G~i~~v~~~~~~~--tg~-~~g~afV~f~~~~~a~~al~~~~--~i~g~~l 155 (221)
....+||-+|+.....+ .| .+.|.+||.|..|.+..++. ... ...-++|+|...++|..||...+ .+.++.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 44678899998876544 44 47889999999998877652 111 22347999999999999987554 4456655
Q ss_pred EEEecC
Q 027630 156 AIDSAT 161 (221)
Q Consensus 156 ~V~~a~ 161 (221)
+..+..
T Consensus 156 ka~~gt 161 (327)
T KOG2068|consen 156 KASLGT 161 (327)
T ss_pred HHhhCC
Confidence 544443
No 162
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.78 E-value=0.075 Score=46.45 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=54.5
Q ss_pred CeEEEcCCCCCC-CHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEecCC
Q 027630 86 KKIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATP 162 (221)
Q Consensus 86 ~~l~V~nLp~~~-te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~a~~ 162 (221)
+.|-+.-.|... +.++|...|.+||+|..|.+-.. ---|.|+|.+..+|-.|-. ....|+++.|+|.|-+|
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 344455555553 56889999999999999988554 2268999999998866644 45589999999999887
No 163
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.69 E-value=1.1 Score=41.73 Aligned_cols=59 Identities=7% Similarity=0.087 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHhhccCCe-----EEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecC
Q 027630 94 PQEATAEDLRRYFSRFGRI-----LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 161 (221)
Q Consensus 94 p~~~te~~l~~~F~~~G~i-----~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~ 161 (221)
-..++..+|-.++..-+.| -.|+|..+ |.||+.... .+...+..+. .+.|+.|.|..+.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChh-hHHHHHHHhccccccCCceEEEECC
Confidence 3347888887777665544 34556433 889988753 4555565443 7899999999875
No 164
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=92.04 E-value=0.4 Score=42.03 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=41.9
Q ss_pred CCCChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHH
Q 027630 1 MPKDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAA 61 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~ 61 (221)
|.+++++|+++|+.++.|.--.|.++. + ..++..||||.|.+.+++..|+.+
T Consensus 298 ~da~~~~l~~~Fk~FG~Ik~~~I~vr~--~-------~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 298 PDATPAELEEVFKQFGPIKEGGIQVRS--P-------GGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred CCCCHHHHHHHHhhcccccccceEEec--c-------CCCcCceEEEEEeecchhhhhhhc
Confidence 457789999999999999877777765 1 114448999999999999999887
No 165
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=90.82 E-value=0.32 Score=43.72 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=47.5
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
..+|..+|.+++++.|.+|+.+--+| -.+.||||.+.+...|...+.-|....|.+.
T Consensus 419 AtDLKnlFSKyGKVvGAKVVTNaRsP---------GaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 419 ATDLKNLFSKYGKVVGAKVVTNARSP---------GARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred hhHHHHHHHHhcceeceeeeecCCCC---------CcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 45789999999999999999987777 4578999999999999999998865555443
No 166
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.13 E-value=0.23 Score=45.18 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=55.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
..+..++||+|+...+..+-++.++..||.|..+.... |+|..|..+.....|+..++ .+++..+.++.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45667999999999999999999999999887765433 99999999998888876444 66777766554
No 167
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.97 E-value=1.5 Score=34.12 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=41.4
Q ss_pred CHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC----ccCCeEEEEEecCCC
Q 027630 98 TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAIDSATPL 163 (221)
Q Consensus 98 te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~l~V~~a~~~ 163 (221)
..+.|+++|..++.+....+++. -+-..|.|.+.++|.+|...++ .+.|..|+|-++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998888877653 3468999999999999976544 688999999988544
No 168
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=88.04 E-value=0.22 Score=42.66 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=44.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 147 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~ 147 (221)
.+|+|.+|+..+...++-+.|..+|.|....+... ...-+|-|.|....+...|+...
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhc
Confidence 56999999999999999999999999877666432 23346678888777777776543
No 169
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=87.74 E-value=0.48 Score=39.52 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=55.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 145 (221)
...+++|++++.+.+.+.++..++..+|.+..+.+.........++++++.|...+.+..||+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~ 148 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE 148 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH
Confidence 357889999999999999899999999988888777766777899999999999999999986
No 170
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=86.95 E-value=0.75 Score=37.16 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=39.9
Q ss_pred HHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 8 VENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 8 ~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
++.-|+..+.|....|.+++... .+++|+|+.|...+....+|. |+...+...
T Consensus 118 ~e~hf~~Cg~i~~~ti~~d~~~~---------~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~ 170 (231)
T KOG4209|consen 118 IELHFESCGGINRVTVPKDKFRG---------HPKGFAYVEFSSYELVEEAYK-LDGSEIPGP 170 (231)
T ss_pred hhheeeccCCccceeeeccccCC---------CcceeEEEecccHhhhHHHhh-cCCcccccc
Confidence 45555556666666777777665 578999999999999999999 776555444
No 171
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.25 E-value=1.8 Score=36.01 Aligned_cols=65 Identities=15% Similarity=0.294 Sum_probs=44.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeE-EEEEe
Q 027630 88 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQ-VAIDS 159 (221)
Q Consensus 88 l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~-l~V~~ 159 (221)
|-|-++|+... ..|..+|++||.|.+..... .--|-+|.|.+..+|++||. +...|++.. |-|+-
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 44446666533 45678899999998765542 22389999999999999996 555666543 33444
No 172
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.92 E-value=5.6 Score=25.81 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHhhccC-----CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 95 QEATAEDLRRYFSRFG-----RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 95 ~~~te~~l~~~F~~~G-----~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
..++..+|..++..-+ .|-.|.|..+ |+||+-... .++.++..++ .+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3478888888887654 4567777554 899988764 5666665443 889999999865
No 173
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=85.65 E-value=1.2 Score=41.64 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=46.6
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR 77 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 77 (221)
.+.+|..+|+++++|....+.. .++.+||.+..-.+|.+|+..|+...+.+..+...|.
T Consensus 434 ~e~dL~~~feefGeiqSi~li~---------------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 434 TEQDLANLFEEFGEIQSIILIP---------------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred hHHHHHHHHHhcccceeEeecc---------------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 4778999999999987655543 3577999999999999999999987777766544443
No 174
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.84 E-value=0.88 Score=42.84 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=56.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC----ccCCeEEEEEecCC
Q 027630 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAIDSATP 162 (221)
Q Consensus 87 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~l~V~~a~~ 162 (221)
+.++.|.+-..+...|..+|+.||.+.++..+++-. .|.|.|.+.+.|-.|+..++ .+-|-+.+|.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 345556666778888999999999999998877633 79999999999888887554 34567788999886
Q ss_pred CCC
Q 027630 163 LDD 165 (221)
Q Consensus 163 ~~~ 165 (221)
-.-
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 543
No 175
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=81.14 E-value=4.8 Score=25.85 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=43.6
Q ss_pred HHHHHHhhccC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCCccCCeEEEEEecCCC
Q 027630 100 EDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 163 (221)
Q Consensus 100 ~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~l~V~~a~~~ 163 (221)
++|.+.|...| .|..+.-+..+.+....-.-||++....+ .+-+-+...|++..|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~-~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN-NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc-ccceeehHhhCCeEEEEecCCCC
Confidence 46777787777 78888888877677777788888876554 22233445788888777665433
No 176
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=80.02 E-value=4.3 Score=26.14 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=43.4
Q ss_pred HHHHHHhhccC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCCccCCeEEEEEecC
Q 027630 100 EDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 161 (221)
Q Consensus 100 ~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~l~V~~a~ 161 (221)
.+|++.|...| .+..+..+..+.+..+.-.-+|+.....+... |-+.+.|+++.+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCc
Confidence 46788888888 78888888887777666777888765533333 445568889887776544
No 177
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=79.35 E-value=20 Score=25.43 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=40.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh
Q 027630 87 KIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146 (221)
Q Consensus 87 ~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ 146 (221)
.+.+...|..++.++|..+.+.+- .|..++|++|.. .++-.+++.|.+...|..-...
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~ 73 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEE 73 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHH
Confidence 344444555566667776666664 677889988733 2566789999999999988753
No 178
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=79.32 E-value=5.1 Score=28.16 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=38.5
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY 68 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~ 68 (221)
+.|+...+|.+++.|--..|-..+ ..+|-+||.|++..+|.+|+.-|++..+.
T Consensus 31 TseemydlFGkyg~IrQIRiG~~k------------~TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 31 TSEEMYDLFGKYGTIRQIRIGNTK------------ETRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred cHHHHHHHhhcccceEEEEecCcc------------CcCceEEEEehHhhhHHHHHHHhcccccC
Confidence 467788888888887433333222 34578999999999999999998875443
No 179
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=78.38 E-value=6.7 Score=32.51 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=36.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCe-EEEEeecCCCCCCcceEEEEEEcCH
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKDPKRTGHRGFGFVTFAEE 137 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~~~~~~~tg~~~g~afV~f~~~ 137 (221)
..-|||+||+.++.-.+|+..+.+.+.+ .++.|. -+++-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 3559999999999999999999887743 344442 1677899999754
No 180
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=77.53 E-value=5.1 Score=36.09 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=49.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHh-hccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-----ccC-CeEEEE
Q 027630 85 GKKIFVGRLPQEATAEDLRRYF-SRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-----EIC-GQQVAI 157 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-----~i~-g~~l~V 157 (221)
.+++.|.|+|-..|...|.+.- ...|.-..+.++.|=.+....|||||.|-+.+++..+.+..+ .++ .+.+.|
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 3455555555554444433332 224556677888887888889999999999998887765332 444 344566
Q ss_pred EecC
Q 027630 158 DSAT 161 (221)
Q Consensus 158 ~~a~ 161 (221)
.||.
T Consensus 468 tYAr 471 (549)
T KOG4660|consen 468 TYAR 471 (549)
T ss_pred ehhh
Confidence 6665
No 181
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=70.11 E-value=13 Score=23.44 Aligned_cols=18 Identities=39% Similarity=0.914 Sum_probs=15.0
Q ss_pred HHHHHHhhccCCeEEEEe
Q 027630 100 EDLRRYFSRFGRILDVYV 117 (221)
Q Consensus 100 ~~l~~~F~~~G~i~~v~~ 117 (221)
++|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999976654
No 182
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=69.20 E-value=3.9 Score=24.80 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=29.5
Q ss_pred CCChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHH
Q 027630 2 PKDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRY 59 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~ 59 (221)
|++.+.+.+-|.++++|....+. ......|+.|.+..+|+.|+
T Consensus 11 ~~~~~~vl~~F~~fGeI~~~~~~---------------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 11 PDLAEEVLEHFASFGEIVDIYVP---------------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred chHHHHHHHHHHhcCCEEEEEcC---------------CCCcEEEEEECCHHHHHhhC
Confidence 34556666777777777654444 12356799999999998874
No 183
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.65 E-value=13 Score=32.42 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH 148 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~ 148 (221)
.+.|=|-++|...-.++|...|+.|+ .--+|.|+.|. .+|..|.+...|..||...|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 45677789999988888999999997 44577887763 79999999999999986544
No 184
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.89 E-value=16 Score=30.48 Aligned_cols=78 Identities=10% Similarity=0.213 Sum_probs=57.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCC-------CCCCcceEEEEEEcCHHHHHHH----HhhCC----
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP-------KRTGHRGFGFVTFAEEVVADRV----SRRSH---- 148 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~-------~tg~~~g~afV~f~~~~~a~~a----l~~~~---- 148 (221)
..+.|.+.|+..+++--.+...|.+||+|++|.++.+. ...+......+.|-+.+.|..- ++.+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45678888999889888888999999999999998765 1122345778899998887754 33332
Q ss_pred ccCCeEEEEEecC
Q 027630 149 EICGQQVAIDSAT 161 (221)
Q Consensus 149 ~i~g~~l~V~~a~ 161 (221)
.+....|.|.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 5666777777654
No 185
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=64.69 E-value=8.1 Score=32.53 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=25.9
Q ss_pred EEEEEcCHHHHHHHHhhCCccCCeEEEEEecCCC
Q 027630 130 GFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 163 (221)
Q Consensus 130 afV~f~~~~~a~~al~~~~~i~g~~l~V~~a~~~ 163 (221)
|||+|++..+|+.|++.........+.|..|-+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCc
Confidence 7999999999999988655555566677776544
No 186
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.26 E-value=10 Score=27.15 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=27.9
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCH-HHHHHHH
Q 027630 87 KIFVGRLPQE---------ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEE-VVADRVS 144 (221)
Q Consensus 87 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~-~~a~~al 144 (221)
.+.|-|++.+ .+.+.|.+.|+.|..++ ++.+.+.. -+.|+++|.|.+. .-...|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 4556666443 34578999999998775 44444422 3789999999854 3444443
No 187
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=62.01 E-value=8.8 Score=31.72 Aligned_cols=35 Identities=29% Similarity=0.575 Sum_probs=27.9
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhhccCCeEEEEee
Q 027630 84 IGKKIFVGRLPQE------------ATAEDLRRYFSRFGRILDVYVP 118 (221)
Q Consensus 84 ~~~~l~V~nLp~~------------~te~~l~~~F~~~G~i~~v~~~ 118 (221)
...+||+.+||-. .+++-|+..|..||.|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4567888888753 3678899999999999988875
No 188
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=61.92 E-value=15 Score=24.97 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=22.4
Q ss_pred EEEEEcCHHHHHHHHhhC-C--ccCCeEEEEEe
Q 027630 130 GFVTFAEEVVADRVSRRS-H--EICGQQVAIDS 159 (221)
Q Consensus 130 afV~f~~~~~a~~al~~~-~--~i~g~~l~V~~ 159 (221)
|+|+|.+...|++.++.. + .+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 689999999999998744 3 56666665543
No 189
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=60.29 E-value=21 Score=24.71 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=23.6
Q ss_pred ccCCceeEEEeehhhHHHHHHHhCCCCc
Q 027630 40 RMSHGGYGAYNAYISAATRYAALGAPTL 67 (221)
Q Consensus 40 ~~~~~g~~~~~~~~~a~~a~~~~~~~~~ 67 (221)
.+.|||||.|.++..+..=+...++...
T Consensus 43 ~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 43 CNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999988888776443
No 190
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=59.89 E-value=19 Score=29.30 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=41.5
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
.+++|.++|.++..+.-..|-.+++ .++.+.|-|.|....+|..|+..+++..+.+.+
T Consensus 96 ~~~Dl~eLF~~~~~~~r~~vhy~~~----------G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 96 IDADLKELFAEFGELKRVAVHYDRA----------GRSLGTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred chHHHHHHHHHhccceEEeeccCCC----------CCCCccceeeecchHhHHHHHHHhcCcccCCce
Confidence 3567788888766554333333332 257788999999999999999999996666654
No 191
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=59.28 E-value=5.2 Score=32.56 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=25.8
Q ss_pred ccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 40 RMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 40 ~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
...|.-||.|...++|++|++.||+.-..+.
T Consensus 108 hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~ 138 (260)
T KOG2202|consen 108 HLVGNVYVKFRSEEDAEAALEDLNNRWYNGR 138 (260)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHcCccccCC
Confidence 4568899999999999999999988555444
No 192
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=57.34 E-value=48 Score=21.13 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=34.5
Q ss_pred CCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEE
Q 027630 96 EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQV 155 (221)
Q Consensus 96 ~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l 155 (221)
.++-++++..+..|.- ..|. .| .| -=||.|.+..+|++|.... ..+....|
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d-~t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DD-RT-----GFYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ec-CC-----EEEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 3677899999999983 2333 33 22 2489999999999998633 34444444
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=51.33 E-value=1.2e+02 Score=27.15 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=49.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 147 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~ 147 (221)
...|.|=.+|..++--+|-.|...+- .|.++++++|..- ++=..+|.|.+.++|....+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~ef 135 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEF 135 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHc
Confidence 67888889999999999999888765 6889999996331 3446799999999999887633
No 194
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=46.26 E-value=35 Score=32.11 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=41.3
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
++.+...|..++-|.+.+|. -|+.+-.+ .+....|||.|-+-.++++|+..|++.+....+.
T Consensus 188 E~~ll~tfGrfgPlasvKim----wpRtEeEk--~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 188 ENFLLRTFGRFGPLASVKIM----WPRTEEEK--RRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred HHHHHHHhcccCcccceeee----cccchhhh--ccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 34444455556666655554 34322221 2567899999999999999999998877666554
No 195
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.20 E-value=89 Score=20.95 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=39.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh
Q 027630 87 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145 (221)
Q Consensus 87 ~l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 145 (221)
+.|+--++...+..+|++.++. |+ .|..|..+.-+. ..-=|||++.....|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 3455557889999999999987 55 677776655432 22359999998887777643
No 196
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=45.41 E-value=42 Score=30.76 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=26.3
Q ss_pred ccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 40 RMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 40 ~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
..+||-|++|.+...|..|+..+++..+.-.
T Consensus 103 gtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 103 GTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 4789999999999999999999988765443
No 197
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=44.68 E-value=89 Score=20.54 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=38.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHH
Q 027630 87 KIFVGRLPQEATAEDLRRYFSR-FG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS 144 (221)
Q Consensus 87 ~l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al 144 (221)
+-|+-.++...+..+|+..++. |+ .|..|..+.-+. ..-=|||++...+.|...-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 4566668889999999999977 55 667776554432 2235999998877766653
No 198
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=44.23 E-value=49 Score=28.28 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=36.8
Q ss_pred HHhcccccccCceEeeccccCCCCCCCCccccCCc-eeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 10 NLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG-GYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 10 ~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
+-|.+++.|. +|+|.+.++--.. .+.++ =|+.|.+.++|++++++..+..+.+.-
T Consensus 139 eyFGQyGkI~--KIvvNkkt~s~ns-----t~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 139 EYFGQYGKIK--KIVVNKKTSSLNS-----TASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred hhhhhcccee--EEEeccccccccc-----ccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 3444566764 6777776652111 12233 389999999999999998887776654
No 199
>COG4907 Predicted membrane protein [Function unknown]
Probab=42.71 E-value=26 Score=31.25 Aligned_cols=7 Identities=0% Similarity=-0.339 Sum_probs=3.2
Q ss_pred eEEEEee
Q 027630 112 ILDVYVP 118 (221)
Q Consensus 112 i~~v~~~ 118 (221)
++++.+.
T Consensus 506 pesI~~W 512 (595)
T COG4907 506 PESIHLW 512 (595)
T ss_pred CcceehH
Confidence 3455443
No 200
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=41.59 E-value=47 Score=25.81 Aligned_cols=8 Identities=63% Similarity=0.808 Sum_probs=3.8
Q ss_pred ccCCeEEE
Q 027630 108 RFGRILDV 115 (221)
Q Consensus 108 ~~G~i~~v 115 (221)
-||.|.++
T Consensus 97 IfG~i~d~ 104 (215)
T KOG3262|consen 97 IFGPINDV 104 (215)
T ss_pred hccccccc
Confidence 34555444
No 201
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.25 E-value=32 Score=27.83 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=28.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV 115 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v 115 (221)
.....+||+-|||..++++.|..+.+++|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3456799999999999999999999998855443
No 202
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=34.73 E-value=85 Score=21.16 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=31.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEc
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 135 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~ 135 (221)
..-|||++++..+.|.-...+.+..+.-.-+-+..+ .+ ..||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~-~n--eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD-NN--EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc-CC--CCCEEEEEeC
Confidence 457999999988887766666665544433333333 22 5689988773
No 203
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=29.43 E-value=82 Score=26.16 Aligned_cols=9 Identities=22% Similarity=0.025 Sum_probs=3.9
Q ss_pred CCCCCCCHH
Q 027630 92 RLPQEATAE 100 (221)
Q Consensus 92 nLp~~~te~ 100 (221)
+|...+|+.
T Consensus 119 GLEg~ltD~ 127 (271)
T COG1512 119 GLEGVLTDA 127 (271)
T ss_pred CcccccChH
Confidence 444444443
No 204
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.29 E-value=11 Score=33.32 Aligned_cols=75 Identities=5% Similarity=-0.199 Sum_probs=51.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 161 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~ 161 (221)
.+.|+..||...+++++.-+|..||.|..+.+-+.-..+...-.+||+-.. +.+..||..+ +.+.+..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 355677889999999999999999999988776554445455567777654 3455555422 35556666666554
No 205
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.14 E-value=89 Score=22.08 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCChHHHHHHhcc----cccccCceEeeccccCC
Q 027630 2 PKDQDSVENLMVD----THELGGSTVVVDRATPK 31 (221)
Q Consensus 2 ~~~~~~~~~~~~~----~~~i~g~~v~~~~~~~~ 31 (221)
|.+.+.+++++++ ...+.+..|.+++.+.+
T Consensus 36 ~~~a~~le~aI~esi~~QP~v~daeV~Id~~~~K 69 (116)
T COG2098 36 PGTAESLEKAIEESIKVQPFVEDAEVKIDRDKEK 69 (116)
T ss_pred ccchHHHHHHHHHHHhcCCceeeEEEEecccccc
Confidence 5677888888875 44567788888876443
No 206
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=27.92 E-value=77 Score=27.23 Aligned_cols=45 Identities=4% Similarity=0.045 Sum_probs=31.4
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 64 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~ 64 (221)
+.+++.-|.++++|....+... ++.+||.|++.++|+.|...+-.
T Consensus 242 e~dIrdhFyqyGeirsi~~~~~---------------~~CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 242 EQDIRDHFYQYGEIRSIRILPR---------------KGCAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred HHHHHHHHhhcCCeeeEEeecc---------------cccceeeehhhHHHHHHHHhhcc
Confidence 3455666666777765444432 34789999999999999888533
No 207
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.61 E-value=1.2e+02 Score=20.07 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=23.6
Q ss_pred CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCCc
Q 027630 111 RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHE 149 (221)
Q Consensus 111 ~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~~ 149 (221)
.|.++-.+.+ .+||-||+=.+..++..|+.....
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 4556655443 789999999999999999986543
No 208
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=27.29 E-value=3.4e+02 Score=22.09 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=27.1
Q ss_pred CCCCeEEEcCCCCCC--CHHHHHHHhhccCC-e---EEEEeecC
Q 027630 83 RIGKKIFVGRLPQEA--TAEDLRRYFSRFGR-I---LDVYVPKD 120 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~--te~~l~~~F~~~G~-i---~~v~~~~~ 120 (221)
+.+.-|.|-.|..+- |-.+|+..|.+.|- + -+|.++.+
T Consensus 92 P~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~ 135 (241)
T COG0217 92 PGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFD 135 (241)
T ss_pred CCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEe
Confidence 445678888887664 56789999998873 2 25777766
No 209
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.09 E-value=75 Score=19.77 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=20.6
Q ss_pred EEEcCHHHHHHHHhhCCccCCeEEEEEecC
Q 027630 132 VTFAEEVVADRVSRRSHEICGQQVAIDSAT 161 (221)
Q Consensus 132 V~f~~~~~a~~al~~~~~i~g~~l~V~~a~ 161 (221)
..|.+.+++..||.......+..+.|..+.
T Consensus 8 ~~F~~~~e~k~av~~yai~~~~~~~v~ksd 37 (67)
T PF03108_consen 8 QTFPSKEEFKEAVREYAIKNGFEFKVKKSD 37 (67)
T ss_pred CEECCHHHHHHHHHHHHHhcCcEEEEeccC
Confidence 368899999999876554555555555554
No 210
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=27.03 E-value=4.2e+02 Score=23.44 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=3.0
Q ss_pred ceEEEEE
Q 027630 127 RGFGFVT 133 (221)
Q Consensus 127 ~g~afV~ 133 (221)
.|.+++.
T Consensus 342 ~G~ai~l 348 (456)
T PRK10590 342 TGEALSL 348 (456)
T ss_pred CeeEEEE
Confidence 3445433
No 211
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.86 E-value=51 Score=18.33 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHhhccC
Q 027630 95 QEATAEDLRRYFSRFG 110 (221)
Q Consensus 95 ~~~te~~l~~~F~~~G 110 (221)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998754
No 212
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=26.39 E-value=75 Score=24.71 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=45.6
Q ss_pred CeEEEcCCCCCCCH-----HHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCe-EEEE
Q 027630 86 KKIFVGRLPQEATA-----EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ-QVAI 157 (221)
Q Consensus 86 ~~l~V~nLp~~~te-----~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~-~l~V 157 (221)
..+.+-+|+..+-. ...+.+|.+|-+....++++ +.++--|.|.+.+.|..|....+ .+.++ .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 44566666655322 23355666666555555554 34466789999999999865544 77777 7777
Q ss_pred EecCCC
Q 027630 158 DSATPL 163 (221)
Q Consensus 158 ~~a~~~ 163 (221)
-++++-
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 777654
No 213
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=25.32 E-value=9.3 Score=34.61 Aligned_cols=63 Identities=8% Similarity=0.066 Sum_probs=42.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 145 (221)
...+.||+.|+++.++-.+|..++..+-....+.+..+..-....-+..|+|.---....|+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~ 291 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACW 291 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHH
Confidence 346789999999999999999999988766666554432222234567788874444444443
No 214
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=23.26 E-value=1.5e+02 Score=20.52 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 136 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~ 136 (221)
..-|||++++..+.+.-...+-+.++.-.-+-+..+ +. ..||.|-++.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~~-eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--NT-ESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--CC-CCCcEEEecCC
Confidence 457999999888777655555555544323333222 22 33899988765
No 215
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.98 E-value=1.7e+02 Score=19.60 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=20.0
Q ss_pred CeEEEEeecCCCCCCcceEEEEEEcC
Q 027630 111 RILDVYVPKDPKRTGHRGFGFVTFAE 136 (221)
Q Consensus 111 ~i~~v~~~~~~~tg~~~g~afV~f~~ 136 (221)
+|.+|+|-.-...++-+++|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36777776655558889999999987
No 216
>PHA01632 hypothetical protein
Probab=22.51 E-value=95 Score=19.06 Aligned_cols=21 Identities=33% Similarity=0.755 Sum_probs=16.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhc
Q 027630 88 IFVGRLPQEATAEDLRRYFSR 108 (221)
Q Consensus 88 l~V~nLp~~~te~~l~~~F~~ 108 (221)
|.|..+|...|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345688999999999987764
No 217
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=21.70 E-value=4.5e+02 Score=24.53 Aligned_cols=78 Identities=9% Similarity=0.066 Sum_probs=52.5
Q ss_pred CCceeEEEeehhhHHHHHHHhCCCCcCCCCC----CCCCC----------C--------CCCCCCCCeEEEcCCCCCCCH
Q 027630 42 SHGGYGAYNAYISAATRYAALGAPTLYDHPG----SFYGR----------G--------ESSQRIGKKIFVGRLPQEATA 99 (221)
Q Consensus 42 ~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~----~~~~~----------~--------~~~~~~~~~l~V~nLp~~~te 99 (221)
+--||+.+++....+--.+.++...++.--+ +.+=+ + ++.......||+.+|+.++.+
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~ 315 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPE 315 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCH
Confidence 4469999999988877777777666665332 11111 1 223456788999999988888
Q ss_pred HHHHHHhhccCCeEEEEeec
Q 027630 100 EDLRRYFSRFGRILDVYVPK 119 (221)
Q Consensus 100 ~~l~~~F~~~G~i~~v~~~~ 119 (221)
+-=.++....--.+.+.|++
T Consensus 316 dVQ~~~irsipGlEna~i~r 335 (621)
T COG0445 316 DVQEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHHHhCcccccceeec
Confidence 76666666666677777765
No 218
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=46 Score=29.10 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=48.3
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHhhc--cCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh
Q 027630 84 IGKKIFVGRLPQEATAE--------DLRRYFSR--FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~--------~l~~~F~~--~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 145 (221)
.-+.+|+.++..+.+.+ ++...|.. .+.+..+..-++-.....+|--|++|.....+++.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34567887777765544 88999988 5677778777776566688889999999999999984
Done!