Query 027630
Match_columns 221
No_of_seqs 247 out of 2445
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 21:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 99.9 7.2E-25 2.5E-29 170.6 14.9 156 3-168 25-188 (196)
2 2qfj_A FBP-interacting repress 99.9 2.1E-24 7.1E-29 170.4 16.3 156 3-167 40-209 (216)
3 3md3_A Nuclear and cytoplasmic 99.9 4.9E-24 1.7E-28 161.2 15.4 150 3-162 12-166 (166)
4 4f02_A Polyadenylate-binding p 99.9 8.5E-25 2.9E-29 173.2 11.4 152 3-165 27-183 (213)
5 1b7f_A Protein (SXL-lethal pro 99.9 1.1E-23 3.7E-28 159.9 13.7 149 3-160 15-168 (168)
6 2cjk_A Nuclear polyadenylated 99.9 2.7E-24 9.3E-29 163.2 10.2 151 3-164 15-167 (167)
7 1fxl_A Paraneoplastic encephal 99.9 1.9E-23 6.6E-28 158.1 13.5 149 3-160 14-167 (167)
8 2yh0_A Splicing factor U2AF 65 99.9 7.1E-24 2.4E-28 165.2 11.1 154 3-166 16-197 (198)
9 2g4b_A Splicing factor U2AF 65 99.9 1.5E-23 5.1E-28 159.8 11.9 147 3-161 16-172 (172)
10 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-22 3.9E-27 153.6 13.5 128 40-167 11-154 (158)
11 3nmr_A Cugbp ELAV-like family 99.9 1.3E-22 4.3E-27 154.8 13.8 151 3-161 15-175 (175)
12 1fje_B Nucleolin RBD12, protei 99.9 6.2E-23 2.1E-27 157.0 10.0 145 3-163 25-174 (175)
13 3smz_A Protein raver-1, ribonu 99.9 8.8E-22 3E-26 162.0 14.3 154 3-166 107-267 (284)
14 2ghp_A U4/U6 snRNA-associated 99.9 1.3E-21 4.6E-26 161.5 12.3 151 3-164 129-292 (292)
15 1h2v_Z 20 kDa nuclear CAP bind 99.9 3.3E-21 1.1E-25 145.3 12.6 85 82-166 36-122 (156)
16 4fxv_A ELAV-like protein 1; RN 99.9 2.3E-21 7.8E-26 135.4 10.7 81 82-162 16-98 (99)
17 3smz_A Protein raver-1, ribonu 99.9 7.5E-21 2.6E-25 156.4 14.3 142 3-165 34-177 (284)
18 2lea_A Serine/arginine-rich sp 99.8 3.3E-21 1.1E-25 142.1 9.0 125 43-167 5-131 (135)
19 2adc_A Polypyrimidine tract-bi 99.8 2.8E-20 9.4E-25 148.7 14.4 142 3-163 47-228 (229)
20 2lxi_A RNA-binding protein 10; 99.8 4.5E-21 1.5E-25 131.9 8.4 82 85-166 1-86 (91)
21 2dgs_A DAZ-associated protein 99.8 3.7E-20 1.3E-24 129.0 12.9 89 80-168 5-94 (99)
22 3sde_A Paraspeckle component 1 99.8 1.1E-20 3.7E-25 154.0 11.7 143 3-166 34-182 (261)
23 2cqg_A TDP-43, TAR DNA-binding 99.8 5.2E-20 1.8E-24 129.2 13.6 87 81-167 11-97 (103)
24 3tyt_A Heterogeneous nuclear r 99.8 8.6E-21 2.9E-25 149.4 10.6 142 3-160 17-204 (205)
25 2cqd_A RNA-binding region cont 99.8 1.4E-19 4.9E-24 129.6 15.7 88 79-166 11-99 (116)
26 3pgw_A U1-A; protein-RNA compl 99.8 3.3E-20 1.1E-24 152.3 13.9 73 84-161 206-281 (282)
27 1qm9_A Polypyrimidine tract-bi 99.8 2.4E-20 8.3E-25 145.4 11.9 141 4-163 17-197 (198)
28 1whw_A Hypothetical protein ri 99.8 8.8E-20 3E-24 127.0 13.3 86 82-167 5-92 (99)
29 1x5u_A Splicing factor 3B subu 99.8 9.7E-20 3.3E-24 128.2 13.4 88 80-167 10-99 (105)
30 2dnm_A SRP46 splicing factor; 99.8 4.4E-20 1.5E-24 129.6 11.5 90 79-168 7-98 (103)
31 3q2s_C Cleavage and polyadenyl 99.8 6.2E-21 2.1E-25 152.6 8.1 80 84-163 67-150 (229)
32 2cq0_A Eukaryotic translation 99.8 6.9E-20 2.3E-24 128.6 12.2 87 82-168 12-100 (103)
33 3s8s_A Histone-lysine N-methyl 99.8 5.5E-20 1.9E-24 130.8 11.2 83 83-165 4-88 (110)
34 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-19 3.9E-24 130.0 12.9 87 82-168 22-110 (115)
35 2dnz_A Probable RNA-binding pr 99.8 1.1E-19 3.8E-24 125.5 12.4 84 83-166 3-88 (95)
36 2ghp_A U4/U6 snRNA-associated 99.8 3.5E-20 1.2E-24 152.9 11.5 146 3-167 53-201 (292)
37 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.9E-20 2.4E-24 128.2 11.0 87 82-168 9-97 (102)
38 1x5s_A Cold-inducible RNA-bind 99.8 1E-19 3.6E-24 127.3 11.3 87 81-167 8-96 (102)
39 2dgo_A Cytotoxic granule-assoc 99.8 5.3E-19 1.8E-23 126.5 15.1 88 80-167 10-99 (115)
40 2cph_A RNA binding motif prote 99.8 2.1E-19 7.1E-24 126.8 12.9 88 80-167 10-101 (107)
41 2fy1_A RNA-binding motif prote 99.8 2.2E-19 7.4E-24 128.9 13.1 84 82-166 4-89 (116)
42 1wi8_A EIF-4B, eukaryotic tran 99.8 1.9E-19 6.4E-24 126.6 12.5 85 81-167 11-98 (104)
43 1x5t_A Splicing factor 3B subu 99.8 9.4E-20 3.2E-24 126.1 10.6 85 83-167 3-90 (96)
44 2lkz_A RNA-binding protein 5; 99.8 3E-20 1E-24 128.7 8.0 81 82-162 6-94 (95)
45 1u6f_A Tcubp1, RNA-binding pro 99.8 2.6E-19 8.9E-24 132.3 13.4 86 81-166 38-125 (139)
46 2d9p_A Polyadenylate-binding p 99.8 2.4E-19 8.2E-24 125.8 12.6 87 80-168 10-98 (103)
47 2dgp_A Bruno-like 4, RNA bindi 99.8 1.3E-19 4.3E-24 127.8 11.2 88 80-167 8-100 (106)
48 2dnh_A Bruno-like 5, RNA bindi 99.8 3.4E-19 1.2E-23 125.4 13.1 86 82-168 12-102 (105)
49 2dng_A Eukaryotic translation 99.8 3.3E-19 1.1E-23 125.1 13.0 85 81-167 11-97 (103)
50 1x4h_A RNA-binding protein 28; 99.8 4.4E-19 1.5E-23 126.0 13.6 88 81-168 11-106 (111)
51 2do4_A Squamous cell carcinoma 99.8 4.8E-19 1.6E-23 123.6 13.4 84 82-166 14-99 (100)
52 2rs2_A Musashi-1, RNA-binding 99.8 2E-19 6.9E-24 127.6 11.4 86 81-166 21-107 (109)
53 2dh8_A DAZ-associated protein 99.8 1.5E-19 5.1E-24 127.2 10.5 87 81-167 12-99 (105)
54 3md1_A Nuclear and cytoplasmic 99.8 2.3E-19 7.7E-24 120.8 10.6 79 86-164 2-82 (83)
55 2dhg_A TRNA selenocysteine ass 99.8 3.2E-19 1.1E-23 125.3 11.4 86 82-168 6-95 (104)
56 2cpe_A RNA-binding protein EWS 99.8 3.6E-19 1.2E-23 126.9 11.8 87 81-167 11-107 (113)
57 2cpf_A RNA binding motif prote 99.8 2.7E-19 9.1E-24 124.3 10.3 86 83-168 3-93 (98)
58 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.4E-19 8.3E-24 121.7 9.9 81 83-163 4-86 (87)
59 2e5h_A Zinc finger CCHC-type a 99.8 6.4E-19 2.2E-23 121.4 12.0 81 81-161 12-94 (94)
60 2i2y_A Fusion protein consists 99.8 6.8E-20 2.3E-24 137.3 7.4 119 40-164 11-149 (150)
61 3s7r_A Heterogeneous nuclear r 99.8 6.1E-19 2.1E-23 119.8 11.4 80 81-160 7-87 (87)
62 3ex7_B RNA-binding protein 8A; 99.8 2.5E-19 8.5E-24 130.2 10.0 85 82-166 19-105 (126)
63 2cq3_A RNA-binding protein 9; 99.8 1.7E-18 5.7E-23 121.4 13.8 88 79-168 9-98 (103)
64 1x4b_A Heterogeneous nuclear r 99.8 4.1E-19 1.4E-23 127.3 10.8 85 83-167 25-110 (116)
65 1p27_B RNA-binding protein 8A; 99.8 3.4E-19 1.2E-23 125.6 10.1 84 82-165 20-105 (106)
66 2jrs_A RNA-binding protein 39; 99.8 5.1E-19 1.7E-23 125.4 10.9 85 80-164 21-107 (108)
67 3p5t_L Cleavage and polyadenyl 99.8 7.1E-20 2.4E-24 125.5 6.2 82 86-167 2-87 (90)
68 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.9E-18 6.4E-23 121.1 13.5 85 81-167 11-97 (103)
69 3pgw_S U1-70K; protein-RNA com 99.8 1.1E-18 3.8E-23 151.7 14.9 84 83-166 100-185 (437)
70 2cqc_A Arginine/serine-rich sp 99.8 7.3E-19 2.5E-23 121.3 11.0 82 81-162 11-94 (95)
71 2div_A TRNA selenocysteine ass 99.8 5.9E-19 2E-23 122.8 10.3 83 82-164 6-95 (99)
72 2x1f_A MRNA 3'-END-processing 99.8 7.4E-19 2.5E-23 121.7 10.6 81 85-165 2-84 (96)
73 4f25_A Polyadenylate-binding p 99.8 4.5E-19 1.5E-23 127.0 9.8 82 84-167 4-87 (115)
74 1oo0_B CG8781-PA, drosophila Y 99.8 5.1E-19 1.7E-23 125.5 10.0 85 82-166 23-109 (110)
75 2kxn_B Transformer-2 protein h 99.8 4.7E-19 1.6E-23 129.5 10.1 85 81-165 42-128 (129)
76 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.2E-19 1.8E-23 119.6 9.5 80 82-161 4-85 (85)
77 1x4c_A Splicing factor, argini 99.8 4.1E-18 1.4E-22 120.6 14.2 79 81-166 11-96 (108)
78 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-18 4.1E-23 120.7 11.1 82 82-166 6-93 (96)
79 2la6_A RNA-binding protein FUS 99.8 1.1E-18 3.8E-23 121.5 10.9 82 80-161 8-99 (99)
80 2dgw_A Probable RNA-binding pr 99.8 2.4E-18 8.1E-23 117.9 12.1 82 81-165 6-89 (91)
81 2do0_A HnRNP M, heterogeneous 99.8 5.8E-18 2E-22 120.7 14.5 85 81-166 11-97 (114)
82 1sjq_A Polypyrimidine tract-bi 99.8 6.9E-19 2.3E-23 123.5 9.3 81 82-168 13-97 (105)
83 1wg5_A Heterogeneous nuclear r 99.8 3E-18 1E-22 120.5 12.7 84 81-165 11-96 (104)
84 1x4a_A Splicing factor, argini 99.8 4.2E-18 1.4E-22 120.6 12.7 83 81-166 18-102 (109)
85 1wez_A HnRNP H', FTP-3, hetero 99.8 1.6E-18 5.6E-23 121.5 10.4 82 81-164 11-93 (102)
86 3ucg_A Polyadenylate-binding p 99.8 2.3E-18 7.7E-23 117.4 10.8 78 85-163 6-85 (89)
87 4a8x_A RNA-binding protein wit 99.8 1E-18 3.4E-23 118.8 9.0 82 84-165 3-87 (88)
88 3ns6_A Eukaryotic translation 99.8 1.4E-19 5E-24 126.4 4.6 82 83-164 4-94 (100)
89 2dgv_A HnRNP M, heterogeneous 99.8 2.6E-18 9E-23 117.8 10.8 83 82-166 5-89 (92)
90 2khc_A Testis-specific RNP-typ 99.8 2.2E-18 7.7E-23 123.7 10.8 81 81-161 36-118 (118)
91 2dis_A Unnamed protein product 99.8 5.6E-18 1.9E-22 119.9 12.3 85 83-167 6-96 (109)
92 2cq1_A PTB-like protein L; RRM 99.8 4.7E-18 1.6E-22 118.9 11.7 81 81-167 11-95 (101)
93 2m2b_A RNA-binding protein 10; 99.8 1.7E-18 5.7E-23 126.8 9.7 86 81-167 19-112 (131)
94 3n9u_C Cleavage and polyadenyl 99.8 1.5E-18 5.2E-23 130.8 9.7 80 84-163 54-137 (156)
95 2fc9_A NCL protein; structure 99.8 8.2E-18 2.8E-22 117.4 12.6 82 81-166 11-94 (101)
96 3ulh_A THO complex subunit 4; 99.8 3.1E-18 1.1E-22 120.8 10.4 80 81-161 25-106 (107)
97 2cqp_A RNA-binding protein 12; 99.8 1.5E-18 5E-23 120.6 8.5 82 82-163 12-95 (98)
98 1p1t_A Cleavage stimulation fa 99.8 6.9E-19 2.4E-23 123.5 6.6 84 83-166 6-91 (104)
99 2ywk_A Putative RNA-binding pr 99.8 2.6E-18 9E-23 118.5 9.5 81 81-162 12-94 (95)
100 2cpi_A CCR4-NOT transcription 99.8 4E-18 1.4E-22 121.2 10.7 84 82-165 12-103 (111)
101 1s79_A Lupus LA protein; RRM, 99.8 2.2E-18 7.4E-23 121.1 9.1 80 82-162 8-88 (103)
102 2fc8_A NCL protein; structure 99.8 5.8E-18 2E-22 118.4 11.0 83 81-166 11-95 (102)
103 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.2E-18 4E-23 121.7 7.4 82 81-164 15-99 (100)
104 2dgu_A Heterogeneous nuclear r 99.8 1.7E-17 5.7E-22 116.3 13.3 79 82-168 8-88 (103)
105 2mss_A Protein (musashi1); RNA 99.8 1.5E-18 5.1E-23 114.6 7.5 74 87-160 1-75 (75)
106 2hgl_A HNRPF protein, heteroge 99.8 1.3E-18 4.4E-23 128.1 7.9 82 81-164 40-126 (136)
107 2cq4_A RNA binding motif prote 99.8 4.8E-19 1.6E-23 126.5 5.2 82 84-166 24-107 (114)
108 3r27_A HnRNP L, heterogeneous 99.8 6.1E-18 2.1E-22 117.5 10.5 77 82-164 18-98 (100)
109 2dnq_A RNA-binding protein 4B; 99.8 7.7E-18 2.6E-22 115.2 10.9 78 82-167 5-84 (90)
110 2cpy_A RNA-binding protein 12; 99.8 2.4E-18 8.1E-23 123.0 8.7 82 82-164 12-95 (114)
111 1wex_A Hypothetical protein (r 99.8 1.4E-17 4.8E-22 117.1 12.4 80 82-167 12-95 (104)
112 2kt5_A RNA and export factor-b 99.8 1.8E-17 6.1E-22 120.1 13.3 86 81-167 31-118 (124)
113 2ad9_A Polypyrimidine tract-bi 99.8 5.2E-18 1.8E-22 121.8 10.2 82 81-168 27-112 (119)
114 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.3E-18 1.5E-22 129.4 10.4 86 82-167 69-156 (165)
115 2jwn_A Embryonic polyadenylate 99.8 6.2E-18 2.1E-22 122.4 10.7 81 84-165 35-117 (124)
116 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.3E-18 4.4E-23 115.4 6.4 75 86-160 1-76 (77)
117 1x4d_A Matrin 3; structural ge 99.8 6.7E-18 2.3E-22 118.1 10.2 79 82-166 12-95 (102)
118 1x5o_A RNA binding motif, sing 99.7 2E-17 7E-22 117.9 12.8 81 82-163 22-112 (114)
119 1x4e_A RNA binding motif, sing 99.7 1.5E-18 5.2E-23 117.3 6.5 78 83-160 3-82 (85)
120 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.2E-17 7.7E-22 121.7 13.3 80 81-160 59-140 (140)
121 2cpx_A Hypothetical protein FL 99.7 3.1E-18 1.1E-22 122.4 8.3 87 82-168 22-110 (115)
122 2ek1_A RNA-binding protein 12; 99.7 1.3E-18 4.3E-23 120.2 5.9 81 82-162 12-94 (95)
123 2hgn_A Heterogeneous nuclear r 99.7 1E-18 3.5E-23 129.1 5.7 83 81-165 42-125 (139)
124 2dgt_A RNA-binding protein 30; 99.7 1.9E-17 6.4E-22 113.7 11.6 80 80-167 5-86 (92)
125 1iqt_A AUF1, heterogeneous nuc 99.7 2E-18 6.8E-23 113.9 6.2 74 87-160 1-75 (75)
126 3d2w_A TAR DNA-binding protein 99.7 8E-18 2.7E-22 115.0 9.2 79 82-165 8-86 (89)
127 1why_A Hypothetical protein ri 99.7 3.1E-17 1.1E-21 113.7 12.0 78 82-165 14-95 (97)
128 1x4f_A Matrin 3; structural ge 99.7 1.4E-17 4.9E-22 118.2 10.1 80 82-167 22-106 (112)
129 1wf0_A TDP-43, TAR DNA-binding 99.7 7.4E-18 2.5E-22 114.8 8.2 80 83-167 3-82 (88)
130 2ki2_A SS-DNA binding protein 99.7 1.6E-18 5.4E-23 118.5 4.8 80 86-166 2-83 (90)
131 2nlw_A Eukaryotic translation 99.7 2.3E-17 7.8E-22 116.2 10.7 82 82-165 12-102 (105)
132 2err_A Ataxin-2-binding protei 99.7 1E-17 3.4E-22 118.8 8.9 83 79-163 23-107 (109)
133 2xs2_A Deleted in azoospermia- 99.7 3.2E-18 1.1E-22 119.7 6.2 84 82-166 6-89 (102)
134 2hvz_A Splicing factor, argini 99.7 2.4E-17 8.2E-22 115.1 10.5 76 86-166 1-78 (101)
135 1fj7_A Nucleolin RBD1, protein 99.7 2E-18 6.8E-23 120.6 4.9 83 82-166 14-98 (101)
136 1wel_A RNA-binding protein 12; 99.7 5.2E-18 1.8E-22 123.0 7.3 84 80-164 20-105 (124)
137 2lcw_A RNA-binding protein FUS 99.6 2.2E-19 7.5E-24 128.7 0.0 85 82-166 4-98 (116)
138 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-17 3.9E-22 119.4 9.0 82 82-164 5-89 (114)
139 1x4g_A Nucleolysin TIAR; struc 99.7 3E-17 1E-21 116.2 10.9 80 82-167 22-103 (109)
140 2cpd_A Apobec-1 stimulating pr 99.7 8.4E-17 2.9E-21 111.9 13.0 78 81-166 11-92 (99)
141 2db1_A Heterogeneous nuclear r 99.7 7.4E-18 2.5E-22 121.2 7.5 82 82-164 14-99 (118)
142 2a3j_A U1 small nuclear ribonu 99.7 4E-17 1.4E-21 118.8 10.8 81 82-165 26-112 (127)
143 2cpj_A Non-POU domain-containi 99.7 5.1E-17 1.7E-21 113.0 10.9 80 81-166 11-92 (99)
144 2dnp_A RNA-binding protein 14; 99.7 6E-17 2.1E-21 110.6 10.8 77 82-166 6-84 (90)
145 2e5g_A U6 snRNA-specific termi 99.7 7.6E-17 2.6E-21 111.1 11.4 80 82-167 5-86 (94)
146 2jvr_A Nucleolar protein 3; RN 99.7 2.3E-17 8E-22 117.2 9.0 78 82-163 25-105 (111)
147 2dnn_A RNA-binding protein 12; 99.7 1.6E-17 5.4E-22 117.8 8.0 78 84-163 15-93 (109)
148 2hgm_A HNRPF protein, heteroge 99.7 9.8E-18 3.4E-22 121.7 7.0 81 82-164 39-122 (126)
149 2lmi_A GRSF-1, G-rich sequence 99.7 7.8E-18 2.7E-22 119.0 5.7 83 81-164 7-93 (107)
150 2wbr_A GW182, gawky, LD47780P; 99.7 4.7E-17 1.6E-21 109.6 9.1 72 84-161 6-79 (89)
151 1wf1_A RNA-binding protein RAL 99.7 8.8E-17 3E-21 114.0 11.1 77 82-166 24-103 (110)
152 2ytc_A PRE-mRNA-splicing facto 99.7 1.1E-16 3.8E-21 108.0 10.7 75 81-161 8-85 (85)
153 2e5j_A Methenyltetrahydrofolat 99.7 7.8E-17 2.7E-21 111.7 9.9 79 82-165 16-96 (97)
154 2krb_A Eukaryotic translation 99.7 2.6E-17 9E-22 110.3 7.0 71 85-157 1-80 (81)
155 1fjc_A Nucleolin RBD2, protein 99.7 4.8E-17 1.6E-21 112.4 8.3 80 81-165 12-93 (96)
156 3beg_B Splicing factor, argini 99.7 4.7E-17 1.6E-21 116.4 8.5 76 82-164 13-95 (115)
157 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-17 4.7E-22 120.5 5.6 81 83-164 21-106 (123)
158 2jvo_A Nucleolar protein 3; nu 99.7 6.9E-17 2.3E-21 114.3 9.0 78 81-166 27-106 (108)
159 4f02_A Polyadenylate-binding p 99.7 9.7E-17 3.3E-21 126.7 10.9 82 83-164 13-96 (213)
160 1x5p_A Negative elongation fac 99.7 5.6E-16 1.9E-20 107.3 13.2 79 81-167 11-91 (97)
161 2e44_A Insulin-like growth fac 99.7 1.1E-16 3.7E-21 110.6 9.5 80 82-165 12-94 (96)
162 2kvi_A Nuclear polyadenylated 99.7 4.2E-17 1.4E-21 112.9 7.3 78 82-167 7-87 (96)
163 2cqh_A IGF-II mRNA-binding pro 99.7 6.4E-17 2.2E-21 111.2 8.2 79 82-167 5-87 (93)
164 2la4_A Nuclear and cytoplasmic 99.7 5.5E-17 1.9E-21 113.2 7.8 76 82-163 24-101 (101)
165 1nu4_A U1A RNA binding domain; 99.7 5.8E-17 2E-21 112.2 7.5 81 82-165 5-91 (97)
166 2xnq_A Nuclear polyadenylated 99.7 2.4E-16 8.1E-21 109.3 10.4 76 81-164 18-96 (97)
167 2f3j_A RNA and export factor b 99.7 1.4E-16 4.7E-21 122.5 10.0 82 82-164 85-168 (177)
168 3lqv_A PRE-mRNA branch site pr 99.7 1.5E-16 5.1E-21 113.6 9.5 81 82-165 5-87 (115)
169 1l3k_A Heterogeneous nuclear r 99.7 1.8E-16 6.2E-21 122.8 10.5 86 81-166 9-95 (196)
170 1sjr_A Polypyrimidine tract-bi 99.7 2.4E-16 8.1E-21 118.8 10.4 80 82-165 43-126 (164)
171 2j8a_A Histone-lysine N-methyl 99.7 9E-17 3.1E-21 115.4 7.6 77 85-161 2-94 (136)
172 2cjk_A Nuclear polyadenylated 99.7 9.9E-17 3.4E-21 121.2 8.2 81 84-164 2-82 (167)
173 1fxl_A Paraneoplastic encephal 99.7 4.7E-16 1.6E-20 117.1 10.9 81 85-165 2-84 (167)
174 1b7f_A Protein (SXL-lethal pro 99.7 3.6E-16 1.2E-20 118.1 9.9 83 84-166 2-86 (168)
175 1whx_A Hypothetical protein ri 99.7 2.2E-16 7.4E-21 112.3 8.0 75 83-163 8-84 (111)
176 2cq2_A Hypothetical protein LO 99.7 4.9E-16 1.7E-20 110.5 9.7 80 83-168 23-111 (114)
177 3egn_A RNA-binding protein 40; 99.6 7.9E-17 2.7E-21 119.5 4.7 85 82-166 42-133 (143)
178 2e5i_A Heterogeneous nuclear r 99.6 4.2E-15 1.4E-19 107.4 12.2 76 84-165 24-104 (124)
179 1wg1_A KIAA1579 protein, homol 99.6 7.3E-16 2.5E-20 104.8 7.7 74 83-163 3-78 (88)
180 2diu_A KIAA0430 protein; struc 99.6 1.4E-15 5E-20 103.3 8.9 73 84-166 7-87 (96)
181 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-15 5.3E-20 110.3 9.1 78 83-165 26-108 (130)
182 2qfj_A FBP-interacting repress 99.6 2.7E-15 9.2E-20 117.9 9.9 81 84-164 27-109 (216)
183 2voo_A Lupus LA protein; RNA-b 99.6 4.5E-15 1.5E-19 115.6 10.7 78 85-163 109-187 (193)
184 3md3_A Nuclear and cytoplasmic 99.6 4.6E-15 1.6E-19 111.5 10.3 79 86-165 1-81 (166)
185 3tyt_A Heterogeneous nuclear r 99.6 4.7E-15 1.6E-19 116.5 9.9 76 84-164 3-81 (205)
186 2bz2_A Negative elongation fac 99.6 4.5E-15 1.6E-19 107.0 8.6 77 82-166 36-114 (121)
187 3u1l_A PRE-mRNA-splicing facto 99.6 4.7E-15 1.6E-19 118.6 9.1 78 82-165 131-231 (240)
188 2hzc_A Splicing factor U2AF 65 99.6 5.8E-15 2E-19 99.8 8.1 70 83-159 4-86 (87)
189 3nmr_A Cugbp ELAV-like family 99.6 9.9E-15 3.4E-19 110.8 9.0 82 84-165 2-90 (175)
190 2d9o_A DNAJ (HSP40) homolog, s 99.6 8.8E-14 3E-18 96.7 12.8 78 85-167 10-94 (100)
191 3pgw_A U1-A; protein-RNA compl 99.5 2.7E-14 9.3E-19 116.9 11.3 80 82-164 6-91 (282)
192 2pe8_A Splicing factor 45; RRM 99.5 3.2E-14 1.1E-18 99.9 9.7 80 83-162 6-93 (105)
193 2adc_A Polypyrimidine tract-bi 99.5 5.1E-14 1.7E-18 112.2 10.3 79 82-165 31-112 (229)
194 2dit_A HIV TAT specific factor 99.5 2.4E-13 8.1E-18 96.6 12.0 82 82-167 12-106 (112)
195 1fje_B Nucleolin RBD12, protei 99.5 1.5E-14 5.1E-19 110.1 4.6 85 81-166 9-94 (175)
196 1qm9_A Polypyrimidine tract-bi 99.5 9.5E-14 3.3E-18 107.8 8.5 76 85-165 3-81 (198)
197 3sde_A Paraspeckle component 1 99.4 3.2E-13 1.1E-17 109.7 9.7 78 79-162 16-95 (261)
198 2yh0_A Splicing factor U2AF 65 99.4 2E-12 7E-17 99.9 11.8 75 84-165 3-90 (198)
199 2g4b_A Splicing factor U2AF 65 99.4 1.1E-12 3.8E-17 99.2 9.4 76 84-165 3-90 (172)
200 3v4m_A Splicing factor U2AF 65 99.4 1.1E-12 3.8E-17 92.0 8.1 80 83-162 3-96 (105)
201 1jmt_A Splicing factor U2AF 35 99.4 2.2E-13 7.5E-18 95.5 3.4 70 90-160 20-103 (104)
202 3ue2_A Poly(U)-binding-splicin 99.3 3.8E-12 1.3E-16 91.1 7.6 79 84-162 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.3 9.4E-12 3.2E-16 104.5 9.9 74 82-161 15-97 (345)
204 1owx_A Lupus LA protein, SS-B, 99.2 2E-10 6.7E-15 82.1 9.8 76 80-161 13-94 (121)
205 3s6e_A RNA-binding protein 39; 99.1 2.2E-10 7.6E-15 81.3 8.8 76 83-162 5-92 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 1.9E-09 6.5E-14 72.5 8.3 73 83-163 5-86 (91)
207 4f25_A Polyadenylate-binding p 99.0 3.5E-10 1.2E-14 80.4 4.2 88 3-101 17-113 (115)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 1.9E-08 6.5E-13 68.0 6.5 73 82-162 12-94 (95)
209 3dxb_A Thioredoxin N-terminall 98.7 5E-08 1.7E-12 76.9 8.0 65 97-161 141-211 (222)
210 2hvz_A Splicing factor, argini 98.4 3.2E-07 1.1E-11 63.1 4.6 78 3-94 12-100 (101)
211 3p5t_L Cleavage and polyadenyl 98.3 4.5E-07 1.5E-11 61.0 4.6 66 3-77 13-80 (90)
212 3lqv_A PRE-mRNA branch site pr 98.3 1.4E-07 4.9E-12 66.4 1.8 89 4-111 21-109 (115)
213 4fxv_A ELAV-like protein 1; RN 98.3 3.7E-07 1.3E-11 62.8 3.2 61 3-72 31-91 (99)
214 3s8s_A Histone-lysine N-methyl 98.3 7.1E-07 2.4E-11 62.6 4.3 59 3-70 18-76 (110)
215 2dhx_A Poly (ADP-ribose) polym 98.2 2.9E-05 1E-09 53.0 11.6 75 83-165 6-86 (104)
216 2dnz_A Probable RNA-binding pr 98.2 4.5E-06 1.5E-10 56.4 6.3 63 3-74 17-79 (95)
217 2dnm_A SRP46 splicing factor; 98.2 3.4E-06 1.2E-10 58.0 5.7 63 3-74 25-87 (103)
218 2lxi_A RNA-binding protein 10; 98.1 6.2E-07 2.1E-11 60.6 1.7 60 3-71 13-74 (91)
219 3ns6_A Eukaryotic translation 98.1 2.3E-06 7.8E-11 58.8 4.5 57 4-69 25-81 (100)
220 2dgs_A DAZ-associated protein 98.1 4.8E-06 1.6E-10 56.8 5.9 62 3-74 22-83 (99)
221 2kxn_B Transformer-2 protein h 98.1 6.9E-06 2.3E-10 59.2 6.9 65 3-76 58-122 (129)
222 1x5u_A Splicing factor 3B subu 98.1 4.2E-06 1.5E-10 57.7 5.4 64 3-75 27-90 (105)
223 1x5t_A Splicing factor 3B subu 98.1 3.3E-06 1.1E-10 57.2 4.6 63 3-74 17-80 (96)
224 2dhg_A TRNA selenocysteine ass 98.1 1E-05 3.5E-10 55.6 7.2 65 3-77 21-87 (104)
225 2div_A TRNA selenocysteine ass 98.1 4.4E-06 1.5E-10 57.0 4.8 60 3-71 21-81 (99)
226 2cpz_A CUG triplet repeat RNA- 98.1 4.2E-06 1.4E-10 58.8 4.8 63 3-74 37-99 (115)
227 3md1_A Nuclear and cytoplasmic 98.1 3.2E-06 1.1E-10 55.6 4.0 61 3-72 13-73 (83)
228 2dgp_A Bruno-like 4, RNA bindi 98.1 4.8E-06 1.6E-10 57.5 5.0 56 3-67 25-80 (106)
229 2l9w_A U4/U6 snRNA-associated- 98.1 3.3E-05 1.1E-09 53.3 8.9 71 83-159 19-96 (117)
230 2wbr_A GW182, gawky, LD47780P; 98.1 6.6E-06 2.2E-10 55.1 5.3 70 3-107 19-88 (89)
231 2dnh_A Bruno-like 5, RNA bindi 98.0 7.1E-06 2.4E-10 56.5 5.6 57 3-69 27-83 (105)
232 2lkz_A RNA-binding protein 5; 98.0 3.6E-06 1.2E-10 57.4 3.9 54 3-65 21-76 (95)
233 2krb_A Eukaryotic translation 98.0 6.8E-06 2.3E-10 53.9 5.1 58 4-72 20-78 (81)
234 2m2b_A RNA-binding protein 10; 98.0 9.3E-06 3.2E-10 58.5 6.2 63 3-75 35-103 (131)
235 2jrs_A RNA-binding protein 39; 98.0 7.9E-06 2.7E-10 56.9 5.6 63 3-74 38-100 (108)
236 2cq0_A Eukaryotic translation 98.0 3.5E-06 1.2E-10 58.0 3.7 62 3-73 27-88 (103)
237 1x4e_A RNA binding motif, sing 98.0 3.4E-06 1.2E-10 55.8 3.5 62 3-73 17-78 (85)
238 3bs9_A Nucleolysin TIA-1 isofo 98.0 2.5E-06 8.5E-11 56.7 2.8 60 3-71 18-77 (87)
239 2dgo_A Cytotoxic granule-assoc 98.0 4.7E-06 1.6E-10 58.5 4.3 61 3-72 27-87 (115)
240 1whw_A Hypothetical protein ri 98.0 4E-06 1.4E-10 57.2 3.8 61 3-72 20-80 (99)
241 1x5s_A Cold-inducible RNA-bind 98.0 4.4E-06 1.5E-10 57.3 4.1 62 3-73 24-85 (102)
242 2fy1_A RNA-binding motif prote 98.0 6.7E-06 2.3E-10 58.1 5.0 60 3-72 19-78 (116)
243 2cqb_A Peptidyl-prolyl CIS-tra 98.0 3.1E-06 1.1E-10 58.1 3.1 61 3-72 24-84 (102)
244 1p27_B RNA-binding protein 8A; 98.0 4.9E-06 1.7E-10 57.5 4.1 61 3-72 35-95 (106)
245 2la6_A RNA-binding protein FUS 98.0 1E-05 3.4E-10 55.2 5.5 60 3-71 25-92 (99)
246 2cpe_A RNA-binding protein EWS 98.0 8E-06 2.7E-10 57.1 5.0 62 3-73 27-96 (113)
247 1fj7_A Nucleolin RBD1, protein 98.0 3.6E-06 1.2E-10 57.7 3.1 63 3-76 29-91 (101)
248 1x4h_A RNA-binding protein 28; 98.0 7.1E-06 2.4E-10 57.1 4.7 61 3-72 27-93 (111)
249 2cph_A RNA binding motif prote 98.0 1E-05 3.4E-10 55.9 5.4 63 3-74 27-91 (107)
250 2ek1_A RNA-binding protein 12; 98.0 6E-06 2.1E-10 55.8 4.0 60 3-71 27-86 (95)
251 3n9u_C Cleavage and polyadenyl 98.0 5.3E-06 1.8E-10 61.8 3.9 59 3-70 67-127 (156)
252 2cpf_A RNA binding motif prote 98.0 6.4E-06 2.2E-10 56.0 4.0 66 3-74 17-82 (98)
253 2cpx_A Hypothetical protein FL 98.0 6.9E-06 2.4E-10 57.6 4.3 63 3-74 37-99 (115)
254 2cqp_A RNA-binding protein 12; 98.0 6.1E-06 2.1E-10 56.1 3.9 61 3-72 27-87 (98)
255 1uaw_A Mouse-musashi-1; RNP-ty 98.0 1.5E-05 5E-10 51.5 5.6 59 3-71 12-70 (77)
256 2d9p_A Polyadenylate-binding p 97.9 1.1E-05 3.8E-10 55.4 5.1 61 3-74 27-87 (103)
257 1s79_A Lupus LA protein; RRM, 97.9 1.2E-05 4.1E-10 55.6 5.3 58 3-71 23-80 (103)
258 3ex7_B RNA-binding protein 8A; 97.9 1.4E-05 4.8E-10 57.0 5.5 61 3-72 34-94 (126)
259 3mdf_A Peptidyl-prolyl CIS-tra 97.9 9.1E-06 3.1E-10 53.6 4.2 59 3-70 19-77 (85)
260 2do4_A Squamous cell carcinoma 97.9 6.8E-06 2.3E-10 56.2 3.6 59 3-71 29-87 (100)
261 2x1f_A MRNA 3'-END-processing 97.9 6.5E-06 2.2E-10 55.9 3.5 61 3-72 14-74 (96)
262 1p1t_A Cleavage stimulation fa 97.9 8.5E-06 2.9E-10 56.0 4.0 60 3-71 20-79 (104)
263 2lea_A Serine/arginine-rich sp 97.9 8.4E-06 2.9E-10 59.2 4.1 63 4-75 60-122 (135)
264 2dh8_A DAZ-associated protein 97.9 1.2E-05 4E-10 55.4 4.7 62 3-74 28-89 (105)
265 1u6f_A Tcubp1, RNA-binding pro 97.9 5.7E-06 1.9E-10 60.1 3.1 61 3-72 54-114 (139)
266 3q2s_C Cleavage and polyadenyl 97.9 9.4E-06 3.2E-10 64.3 4.6 59 3-70 80-140 (229)
267 2ki2_A SS-DNA binding protein 97.9 5.4E-06 1.8E-10 55.5 2.7 64 3-76 13-76 (90)
268 3ucg_A Polyadenylate-binding p 97.9 8.8E-06 3E-10 54.2 3.8 60 3-72 18-77 (89)
269 2khc_A Testis-specific RNP-typ 97.9 1.3E-05 4.3E-10 56.5 4.6 58 4-70 53-110 (118)
270 2mss_A Protein (musashi1); RNA 97.9 9.6E-06 3.3E-10 52.3 3.7 59 3-71 11-69 (75)
271 2cqc_A Arginine/serine-rich sp 97.9 6.1E-06 2.1E-10 55.7 2.8 59 3-70 27-85 (95)
272 2e5h_A Zinc finger CCHC-type a 97.9 1.2E-05 3.9E-10 54.2 4.1 59 3-70 28-86 (94)
273 2j76_E EIF-4B, EIF4B, eukaryot 97.9 1.8E-05 6.3E-10 54.1 5.0 62 3-75 31-93 (100)
274 1oo0_B CG8781-PA, drosophila Y 97.9 7.7E-06 2.6E-10 56.9 3.0 61 3-72 38-98 (110)
275 4a8x_A RNA-binding protein wit 97.8 7.5E-06 2.6E-10 54.4 2.7 62 3-72 16-77 (88)
276 2ywk_A Putative RNA-binding pr 97.8 1.3E-05 4.5E-10 54.1 3.9 60 3-72 28-87 (95)
277 2cqd_A RNA-binding region cont 97.8 9.3E-06 3.2E-10 57.1 3.1 60 3-72 29-88 (116)
278 1wel_A RNA-binding protein 12; 97.8 1.6E-05 5.4E-10 56.7 4.3 58 3-70 37-94 (124)
279 1h2v_Z 20 kDa nuclear CAP bind 97.8 1.2E-05 3.9E-10 59.7 3.7 59 3-70 51-109 (156)
280 2dgv_A HnRNP M, heterogeneous 97.8 3.8E-05 1.3E-09 51.4 6.0 63 3-76 20-82 (92)
281 2kn4_A Immunoglobulin G-bindin 97.8 7.5E-06 2.5E-10 60.7 2.6 61 3-72 82-142 (158)
282 2pe8_A Splicing factor 45; RRM 97.8 2.2E-05 7.7E-10 54.4 4.9 59 4-70 26-84 (105)
283 2cq4_A RNA binding motif prote 97.8 2.4E-05 8.1E-10 54.8 4.9 58 3-70 37-94 (114)
284 1wi8_A EIF-4B, eukaryotic tran 97.8 1.6E-05 5.4E-10 54.7 3.8 60 3-72 27-86 (104)
285 3ulh_A THO complex subunit 4; 97.8 1.8E-05 6E-10 54.7 4.1 58 3-70 41-98 (107)
286 2cpi_A CCR4-NOT transcription 97.8 1E-05 3.4E-10 56.6 2.8 64 3-72 27-93 (111)
287 2jwn_A Embryonic polyadenylate 97.8 1.4E-05 4.7E-10 56.8 3.6 60 3-72 48-107 (124)
288 2kt5_A RNA and export factor-b 97.8 1.8E-05 6.1E-10 56.3 4.1 59 3-71 47-105 (124)
289 2nlw_A Eukaryotic translation 97.8 1.1E-05 3.8E-10 55.8 2.7 56 4-70 34-89 (105)
290 1x5o_A RNA binding motif, sing 97.8 5.1E-05 1.8E-09 53.0 6.2 59 3-71 37-95 (114)
291 2do0_A HnRNP M, heterogeneous 97.8 2.3E-05 8E-10 54.7 4.2 60 3-72 27-86 (114)
292 2dng_A Eukaryotic translation 97.8 2E-05 6.9E-10 54.1 3.7 60 3-73 27-86 (103)
293 2lmi_A GRSF-1, G-rich sequence 97.7 4.3E-05 1.5E-09 52.9 5.2 57 3-70 23-82 (107)
294 2hgl_A HNRPF protein, heteroge 97.7 6.1E-05 2.1E-09 54.7 6.1 54 3-67 56-112 (136)
295 1wez_A HnRNP H', FTP-3, hetero 97.7 2.9E-05 9.9E-10 53.5 4.0 58 3-72 27-84 (102)
296 2dis_A Unnamed protein product 97.7 2.7E-05 9.2E-10 53.9 3.6 63 3-74 20-86 (109)
297 2f3j_A RNA and export factor b 97.7 2.5E-05 8.4E-10 59.4 3.6 60 3-72 100-159 (177)
298 2cq3_A RNA-binding protein 9; 97.7 4.8E-05 1.6E-09 52.1 4.8 59 3-72 27-85 (103)
299 2hgn_A Heterogeneous nuclear r 97.7 4.1E-05 1.4E-09 55.9 4.6 61 3-75 58-118 (139)
300 2rs2_A Musashi-1, RNA-binding 97.7 4.5E-05 1.6E-09 53.0 4.6 52 3-63 37-88 (109)
301 1x4a_A Splicing factor, argini 97.7 7.3E-05 2.5E-09 51.8 5.6 60 3-74 34-93 (109)
302 1rk8_A CG8781-PA, CG8781-PA pr 97.7 3.9E-05 1.3E-09 57.4 4.4 61 3-72 84-144 (165)
303 2cq2_A Hypothetical protein LO 97.7 4.8E-05 1.6E-09 53.5 4.5 50 3-67 39-88 (114)
304 3s7r_A Heterogeneous nuclear r 97.6 4.8E-05 1.6E-09 50.4 4.2 51 3-62 23-73 (87)
305 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.6 3.8E-05 1.3E-09 55.5 3.9 58 3-69 75-132 (140)
306 1x4b_A Heterogeneous nuclear r 97.6 2.9E-05 9.9E-10 54.5 3.1 59 3-71 39-97 (116)
307 2err_A Ataxin-2-binding protei 97.6 4.6E-05 1.6E-09 53.0 4.1 59 3-72 41-99 (109)
308 1iqt_A AUF1, heterogeneous nuc 97.6 4.2E-05 1.4E-09 49.1 3.6 57 3-69 11-67 (75)
309 2dnn_A RNA-binding protein 12; 97.6 5.6E-05 1.9E-09 52.7 4.3 53 3-67 28-80 (109)
310 1jmt_A Splicing factor U2AF 35 97.6 4.4E-05 1.5E-09 52.8 3.6 56 6-71 41-97 (104)
311 2cqi_A Nucleolysin TIAR; RNA r 97.6 3.5E-05 1.2E-09 52.8 3.0 59 3-72 27-85 (103)
312 2lcw_A RNA-binding protein FUS 96.7 9.4E-06 3.2E-10 57.1 0.0 63 4-75 20-90 (116)
313 2dgw_A Probable RNA-binding pr 97.6 2.3E-05 8E-10 52.4 1.9 57 3-71 22-78 (91)
314 3v4m_A Splicing factor U2AF 65 97.6 5.8E-05 2E-09 52.3 3.9 58 6-70 30-87 (105)
315 2e5j_A Methenyltetrahydrofolat 97.6 0.00011 3.9E-09 49.7 5.3 58 3-74 31-88 (97)
316 1wg5_A Heterogeneous nuclear r 97.6 9.3E-05 3.2E-09 50.9 4.9 59 3-72 27-86 (104)
317 2cpy_A RNA-binding protein 12; 97.6 5.5E-05 1.9E-09 53.0 3.8 53 3-66 27-80 (114)
318 1sjq_A Polypyrimidine tract-bi 97.6 0.0001 3.6E-09 51.0 5.0 59 4-77 29-89 (105)
319 2bz2_A Negative elongation fac 97.5 0.00011 3.8E-09 52.1 5.2 58 2-74 48-105 (121)
320 1x5p_A Negative elongation fac 97.5 5.8E-05 2E-09 51.2 3.5 55 3-72 25-79 (97)
321 2hgm_A HNRPF protein, heteroge 97.5 0.0001 3.4E-09 52.9 4.8 56 3-70 54-111 (126)
322 2db1_A Heterogeneous nuclear r 97.5 6.8E-05 2.3E-09 52.9 3.7 54 3-67 29-85 (118)
323 2dnq_A RNA-binding protein 4B; 97.5 0.00018 6.3E-09 47.9 5.7 56 3-75 20-75 (90)
324 2la4_A Nuclear and cytoplasmic 97.5 0.00013 4.3E-09 49.8 4.9 58 3-75 39-96 (101)
325 2d9o_A DNAJ (HSP40) homolog, s 97.5 0.00018 6.2E-09 49.3 5.6 47 4-64 30-76 (100)
326 2fc9_A NCL protein; structure 97.5 5.6E-05 1.9E-09 51.5 2.9 57 3-72 27-83 (101)
327 3pgw_S U1-70K; protein-RNA com 97.5 7.3E-05 2.5E-09 64.8 4.2 60 3-71 114-173 (437)
328 1whv_A Poly(A)-specific ribonu 97.5 0.00043 1.5E-08 46.7 6.9 55 83-146 14-68 (100)
329 3ue2_A Poly(U)-binding-splicin 97.5 8.4E-05 2.9E-09 52.6 3.7 61 5-70 39-99 (118)
330 3beg_B Splicing factor, argini 97.4 0.00015 5.1E-09 50.9 4.7 53 3-71 28-80 (115)
331 2dnl_A Cytoplasmic polyadenyla 97.4 9.4E-05 3.2E-09 51.8 3.6 53 3-62 20-72 (114)
332 2cqg_A TDP-43, TAR DNA-binding 97.4 0.00015 5E-09 49.6 4.4 50 3-61 27-76 (103)
333 2jvr_A Nucleolar protein 3; RN 97.4 4.1E-05 1.4E-09 53.6 1.3 57 3-72 40-97 (111)
334 2dgx_A KIAA0430 protein; RRM d 97.4 7.3E-05 2.5E-09 50.6 2.5 58 3-72 21-82 (96)
335 2cpj_A Non-POU domain-containi 97.4 0.00026 8.9E-09 48.0 5.2 57 3-74 27-83 (99)
336 1why_A Hypothetical protein ri 97.4 0.00023 7.7E-09 48.1 4.9 55 3-72 29-85 (97)
337 2fc8_A NCL protein; structure 97.4 0.00013 4.5E-09 49.7 3.6 58 3-72 27-84 (102)
338 1x4g_A Nucleolysin TIAR; struc 97.4 0.00015 5.3E-09 50.1 3.9 58 3-75 37-94 (109)
339 1wf1_A RNA-binding protein RAL 97.4 0.00019 6.5E-09 49.7 4.3 56 3-75 40-95 (110)
340 2a3j_A U1 small nuclear ribonu 97.3 0.00025 8.5E-09 50.8 4.9 56 8-75 50-105 (127)
341 1x4c_A Splicing factor, argini 97.3 9.7E-05 3.3E-09 51.1 2.6 51 3-69 27-77 (108)
342 1sjr_A Polypyrimidine tract-bi 97.3 0.00023 8E-09 53.2 4.7 55 2-69 57-111 (164)
343 2kvi_A Nuclear polyadenylated 97.3 0.00025 8.4E-09 47.9 4.4 55 3-74 23-77 (96)
344 2xs2_A Deleted in azoospermia- 97.3 0.0001 3.5E-09 50.3 2.2 48 3-60 21-68 (102)
345 1wey_A Calcipressin 1; structu 97.3 0.00074 2.5E-08 46.3 6.2 75 84-164 4-85 (104)
346 2jvo_A Nucleolar protein 3; nu 97.2 0.00024 8.3E-09 49.2 3.9 54 3-73 43-96 (108)
347 2cqh_A IGF-II mRNA-binding pro 97.2 0.00021 7.1E-09 47.9 3.4 55 3-73 20-76 (93)
348 2i2y_A Fusion protein consists 97.2 0.00023 7.7E-09 52.2 3.8 57 4-74 86-142 (150)
349 2ad9_A Polypyrimidine tract-bi 97.2 0.00037 1.3E-08 49.3 4.5 55 3-72 43-99 (119)
350 3egn_A RNA-binding protein 40; 97.2 0.00011 3.8E-09 53.4 1.8 61 3-72 57-122 (143)
351 2e5i_A Heterogeneous nuclear r 97.2 0.0007 2.4E-08 48.2 5.9 53 2-69 36-89 (124)
352 2dha_A FLJ20171 protein; RRM d 97.2 0.00023 7.9E-09 50.7 3.3 52 3-65 35-90 (123)
353 2e5g_A U6 snRNA-specific termi 97.2 0.00066 2.3E-08 45.5 5.5 59 3-76 20-78 (94)
354 1whx_A Hypothetical protein ri 97.2 0.00049 1.7E-08 47.9 4.9 55 3-72 22-76 (111)
355 2xnq_A Nuclear polyadenylated 97.2 0.00031 1E-08 47.6 3.6 51 4-71 36-86 (97)
356 3u1l_A PRE-mRNA-splicing facto 97.1 0.00036 1.2E-08 55.5 3.7 49 4-67 156-204 (240)
357 1nu4_A U1A RNA binding domain; 97.1 0.00021 7.2E-09 48.1 2.0 57 4-72 21-81 (97)
358 2dnp_A RNA-binding protein 14; 97.1 0.00043 1.5E-08 46.0 3.5 53 3-72 21-73 (90)
359 1wg1_A KIAA1579 protein, homol 97.1 0.00039 1.3E-08 46.1 3.3 54 3-72 17-70 (88)
360 1x4f_A Matrin 3; structural ge 97.1 0.00071 2.4E-08 47.3 4.8 54 4-72 39-94 (112)
361 3r27_A HnRNP L, heterogeneous 97.1 0.00055 1.9E-08 46.9 4.1 48 3-65 33-80 (100)
362 3zzy_A Polypyrimidine tract-bi 97.0 0.00077 2.6E-08 48.4 4.9 54 2-69 39-93 (130)
363 2dit_A HIV TAT specific factor 97.0 0.0005 1.7E-08 47.8 3.9 55 5-72 40-94 (112)
364 3s6e_A RNA-binding protein 39; 97.0 0.00048 1.7E-08 48.3 3.8 52 6-70 32-83 (114)
365 3ctr_A Poly(A)-specific ribonu 97.0 0.00097 3.3E-08 45.1 5.0 51 86-145 7-57 (101)
366 2diu_A KIAA0430 protein; struc 97.0 0.0014 4.8E-08 44.2 5.8 34 43-76 47-80 (96)
367 1wex_A Hypothetical protein (r 97.0 0.00055 1.9E-08 47.2 3.9 54 4-72 28-83 (104)
368 2hzc_A Splicing factor U2AF 65 97.0 0.00048 1.7E-08 45.3 3.3 56 3-70 18-80 (87)
369 2dgu_A Heterogeneous nuclear r 97.0 0.00032 1.1E-08 47.9 2.5 52 3-71 23-74 (103)
370 1fjc_A Nucleolin RBD2, protein 97.0 0.00021 7.3E-09 48.0 1.5 55 3-71 28-82 (96)
371 2j8a_A Histone-lysine N-methyl 97.0 0.0005 1.7E-08 49.3 3.5 54 3-65 18-81 (136)
372 2cq1_A PTB-like protein L; RRM 97.0 0.00061 2.1E-08 46.7 3.8 55 3-72 27-83 (101)
373 2ytc_A PRE-mRNA-splicing facto 97.0 0.00059 2E-08 44.7 3.5 54 3-71 24-78 (85)
374 1x4d_A Matrin 3; structural ge 97.0 0.00047 1.6E-08 47.4 3.1 53 4-71 29-83 (102)
375 3tht_A Alkylated DNA repair pr 97.0 0.00071 2.4E-08 56.6 4.7 53 3-70 32-84 (345)
376 2cpd_A Apobec-1 stimulating pr 96.9 0.001 3.5E-08 45.0 4.3 55 3-72 27-81 (99)
377 2e44_A Insulin-like growth fac 96.9 0.001 3.4E-08 44.6 4.2 58 3-73 27-85 (96)
378 1uw4_A UPF3X; nonsense mediate 96.8 0.0063 2.1E-07 40.7 7.5 60 86-145 2-63 (91)
379 2dgt_A RNA-binding protein 30; 96.8 0.00067 2.3E-08 45.2 2.6 53 3-72 22-74 (92)
380 1wwh_A Nucleoporin 35, nucleop 96.6 0.0079 2.7E-07 42.2 7.2 72 82-160 21-94 (119)
381 2voo_A Lupus LA protein; RNA-b 96.5 0.002 6.9E-08 49.3 4.1 52 3-64 121-172 (193)
382 3d2w_A TAR DNA-binding protein 96.5 0.0021 7.2E-08 42.7 3.5 40 3-56 23-62 (89)
383 3dxb_A Thioredoxin N-terminall 96.4 0.0047 1.6E-07 48.1 5.7 62 5-71 143-204 (222)
384 2l08_A Regulator of nonsense t 95.7 0.035 1.2E-06 37.4 6.6 64 83-146 7-72 (97)
385 1wf0_A TDP-43, TAR DNA-binding 95.7 0.0055 1.9E-07 40.3 2.5 42 3-58 17-58 (88)
386 3pq1_A Poly(A) RNA polymerase; 95.6 0.0065 2.2E-07 52.7 3.3 55 85-145 53-107 (464)
387 3p3d_A Nucleoporin 53; structu 95.5 0.018 6E-07 41.1 4.6 76 85-161 7-97 (132)
388 2dnr_A Synaptojanin-1; RRM dom 90.3 0.19 6.5E-06 33.4 2.7 25 45-70 52-76 (91)
389 3d45_A Poly(A)-specific ribonu 88.7 1.3 4.3E-05 38.9 7.6 54 85-147 440-493 (507)
390 1owx_A Lupus LA protein, SS-B, 87.6 0.55 1.9E-05 32.9 3.7 46 3-63 31-77 (121)
391 1ufw_A Synaptojanin 2; RNP dom 86.7 0.2 6.9E-06 33.5 0.9 25 45-70 61-85 (95)
392 2dhx_A Poly (ADP-ribose) polym 80.6 1.5 5E-05 29.8 3.2 51 44-98 49-99 (104)
393 4fdd_B RNA-binding protein FUS 49.0 14 0.00049 18.4 2.2 9 213-221 21-29 (29)
394 2pk2_A Cyclin-T1, protein TAT; 48.6 3.7 0.00013 34.2 0.0 10 97-106 229-238 (358)
395 4e8u_A Putative uncharacterize 45.5 51 0.0017 24.3 5.7 56 86-144 13-80 (172)
396 2pk2_A Cyclin-T1, protein TAT; 42.6 5.2 0.00018 33.3 0.0 7 137-143 231-237 (358)
397 4eyt_A Telomerase associated p 29.0 1.2E+02 0.0041 19.7 9.0 72 83-162 10-90 (129)
398 3ts2_A Protein LIN-28 homolog 27.3 13 0.00045 26.7 0.0 28 100-135 2-29 (148)
399 2i9x_A Putative septation prot 24.7 1E+02 0.0035 19.9 3.9 26 111-136 5-30 (87)
400 2g0c_A ATP-dependent RNA helic 24.6 1.2E+02 0.0042 18.3 5.5 56 97-161 13-75 (76)
401 2ia9_A Putative septation prot 21.3 1.2E+02 0.0042 20.0 3.9 26 111-136 5-30 (100)
402 2i9z_A Putative septation prot 20.2 1.4E+02 0.0047 20.0 4.0 26 111-136 5-30 (105)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=7.2e-25 Score=170.55 Aligned_cols=156 Identities=21% Similarity=0.315 Sum_probs=122.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC-----
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR----- 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~----- 77 (221)
.++++|.++|+.++.|....|..++.+. ++++||||.|.+.++|..|+.. ++..+.+.+......
T Consensus 25 ~te~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~ 94 (196)
T 1l3k_A 25 TTDESLRSHFEQWGTLTDCVVMRDPNTK---------RSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSRED 94 (196)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTC---------CEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC---
T ss_pred CCHHHHHHHHHhCCCEEEEEEEEcCCCC---------CccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCccc
Confidence 4689999999999999888887776555 6789999999999999999987 444444443221111
Q ss_pred --CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeE
Q 027630 78 --GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQ 154 (221)
Q Consensus 78 --~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~ 154 (221)
........++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. .+.|.|+.
T Consensus 95 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~ 174 (196)
T 1l3k_A 95 SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 174 (196)
T ss_dssp --------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE
T ss_pred ccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE
Confidence 112234568999999999999999999999999999999999999999999999999999999999974 45899999
Q ss_pred EEEEecCCCCCCCC
Q 027630 155 VAIDSATPLDDAGP 168 (221)
Q Consensus 155 l~V~~a~~~~~~~~ 168 (221)
|.|.++.++.....
T Consensus 175 i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 175 CEVRKALSKQEMAS 188 (196)
T ss_dssp CEEEECC-------
T ss_pred EEEEecCChhHhcc
Confidence 99999999877643
No 2
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.92 E-value=2.1e-24 Score=170.42 Aligned_cols=156 Identities=15% Similarity=0.261 Sum_probs=130.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCC--
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGES-- 80 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~-- 80 (221)
-++++|.++|+.++.|....|..++.+. ++++||||.|.+.++|..|+..+++..+.+.+.........
T Consensus 40 ~t~~~l~~~f~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~ 110 (216)
T 2qfj_A 40 LGEDTIRQAFAPFGPIKSIDMSWDSVTM---------KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ 110 (216)
T ss_dssp CCHHHHHHHHGGGSCEEEEEECCC-CC----------CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGG
T ss_pred CCHHHHHHHHHhCCCEEEEEEeecCCCC---------ccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccc
Confidence 3688999999999988877777665554 67899999999999999999999988887777544332221
Q ss_pred ----------CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--
Q 027630 81 ----------SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-- 148 (221)
Q Consensus 81 ----------~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-- 148 (221)
.....++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|.+|+..++
T Consensus 111 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 190 (216)
T 2qfj_A 111 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF 190 (216)
T ss_dssp GHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC
Confidence 12456899999999999999999999999999999999999999999999999999999999998554
Q ss_pred ccCCeEEEEEecCCCCCCC
Q 027630 149 EICGQQVAIDSATPLDDAG 167 (221)
Q Consensus 149 ~i~g~~l~V~~a~~~~~~~ 167 (221)
.|.|+.|.|.++.++....
T Consensus 191 ~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 191 DLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp BCSSSBCEEEECSSCSSTT
T ss_pred EeCCcEEEEEEecCCCCCC
Confidence 8999999999999875443
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.9e-24 Score=161.21 Aligned_cols=150 Identities=19% Similarity=0.270 Sum_probs=127.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC---CCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY---GRGE 79 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~---~~~~ 79 (221)
.++++|.+.|+.++.|....+..++. . +++++|||.|.+.++|..|+..+++..+.+.+.... ....
T Consensus 12 ~t~~~l~~~f~~~G~i~~v~i~~~~~-~---------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 12 ITEDILKQYFQVGGPIANIKIMIDKN-N---------KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEECCCC-----------CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCC-C---------CCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 46889999999998887766665532 2 578999999999999999999999888877664332 2222
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAI 157 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V 157 (221)
.......+|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..+ ..|.|+.|.|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999754 4899999999
Q ss_pred EecCC
Q 027630 158 DSATP 162 (221)
Q Consensus 158 ~~a~~ 162 (221)
.+|++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99874
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.92 E-value=8.5e-25 Score=173.21 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=129.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCC--
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGES-- 80 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~-- 80 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|..|+..+++..+.+.+.........
T Consensus 27 ~te~~L~~~F~~~G~I~~v~i~~d~~tg---------~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~ 97 (213)
T 4f02_A 27 VTEAMLYEKFSPAGPILSIRVCRDMITR---------RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPS 97 (213)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTC---------CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTH
T ss_pred CCHHHHHHHHHhhCCEEEEEEecccCCC---------CccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccc
Confidence 3689999999999999988888877666 78899999999999999999999988877766543332221
Q ss_pred -CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 81 -SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 81 -~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
......+|||+|||+.+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.++ .|+|+.|.|
T Consensus 98 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V 175 (213)
T 4f02_A 98 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 175 (213)
T ss_dssp HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 12345799999999999999999999999999999999874 3479999999999999999997554 899999999
Q ss_pred EecCCCCC
Q 027630 158 DSATPLDD 165 (221)
Q Consensus 158 ~~a~~~~~ 165 (221)
.+|.++..
T Consensus 176 ~~a~~~~~ 183 (213)
T 4f02_A 176 GRFKSRKE 183 (213)
T ss_dssp EECCCHHH
T ss_pred EEcCCCcc
Confidence 99998654
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.91 E-value=1.1e-23 Score=159.91 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=127.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCC-CCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG-ESS 81 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~-~~~ 81 (221)
-++++|.++|++++.|....+..++.+. ++++||||.|.+.++|..|+..+++..+.+.+....... ...
T Consensus 15 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 85 (168)
T 1b7f_A 15 MTDRELYALFRAIGPINTCRIMRDYKTG---------YSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE 85 (168)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCEETTTT---------EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEeCCCC---------ccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc
Confidence 4688999999999988877777665555 788999999999999999999999888877765443322 223
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCC--eEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g--~~l~V 157 (221)
....++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..++ .+.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999997554 7777 99999
Q ss_pred Eec
Q 027630 158 DSA 160 (221)
Q Consensus 158 ~~a 160 (221)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 6
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.91 E-value=2.7e-24 Score=163.17 Aligned_cols=151 Identities=22% Similarity=0.306 Sum_probs=123.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCC-CC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGE-SS 81 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~-~~ 81 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|..|+.. ...+.+.+........ ..
T Consensus 15 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~ 83 (167)
T 2cjk_A 15 TTEDNLREYFGKYGTVTDLKIMKDPATG---------RSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDE 83 (167)
T ss_dssp CCHHHHHHHHTTTCCEEEEECCCCTTTS---------SCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHH
T ss_pred CCHHHHHHHHHhCCCEEEEEEEECCCCC---------CccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhh
Confidence 4689999999999988877777665555 7889999999999999999986 2233333332221111 11
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeEEEEEec
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 160 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~l~V~~a 160 (221)
.....+|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++. ...|.|+.|.|.+|
T Consensus 84 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 84 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEEC
T ss_pred ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeec
Confidence 23457999999999999999999999999999999999999999999999999999999999972 23899999999999
Q ss_pred CCCC
Q 027630 161 TPLD 164 (221)
Q Consensus 161 ~~~~ 164 (221)
.|+.
T Consensus 164 ~pk~ 167 (167)
T 2cjk_A 164 EPRH 167 (167)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9873
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.90 E-value=1.9e-23 Score=158.08 Aligned_cols=149 Identities=21% Similarity=0.305 Sum_probs=126.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCC-CCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG-ESS 81 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~-~~~ 81 (221)
-++++|.+.|+.++.|....+..++.+. +++++|||.|.+.++|..|+..+++..+.+.+....... ...
T Consensus 14 ~~~~~l~~~f~~~G~i~~v~~~~~~~~~---------~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 14 MTQEEFRSLFGSIGEIESCKLVRDKITG---------QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 84 (167)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECTTTC---------CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCC---------cceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Confidence 3689999999999999888887776555 678999999999999999999999888877765443322 223
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeE--EEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ--VAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~--l~V 157 (221)
.....+|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|++.++ .+.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 4467899999999999999999999999999999999998899999999999999999999998554 788864 888
Q ss_pred Eec
Q 027630 158 DSA 160 (221)
Q Consensus 158 ~~a 160 (221)
.+|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.90 E-value=7.1e-24 Score=165.17 Aligned_cols=154 Identities=13% Similarity=0.231 Sum_probs=122.9
Q ss_pred CChHHHHHHhcccccccCce-----EeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGST-----VVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~-----v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 77 (221)
-++++|.++|++++.|.|.. .+++..+. ++++||||.|.+.++|..|+ .+++..+.+.+......
T Consensus 16 ~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---------~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~ 85 (198)
T 2yh0_A 16 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRP 85 (198)
T ss_dssp CCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---------TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECC
T ss_pred CCHHHHHHHHHHHHhhcccccCCCCceEEeEec---------CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCC
Confidence 46899999999988877732 22222233 56799999999999999999 77766555544211100
Q ss_pred ---------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcC
Q 027630 78 ---------------------GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE 136 (221)
Q Consensus 78 ---------------------~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~ 136 (221)
........++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~ 165 (198)
T 2yh0_A 86 HDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 165 (198)
T ss_dssp CCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred CCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECC
Confidence 01112467899999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHhhC--CccCCeEEEEEecCCCCCC
Q 027630 137 EVVADRVSRRS--HEICGQQVAIDSATPLDDA 166 (221)
Q Consensus 137 ~~~a~~al~~~--~~i~g~~l~V~~a~~~~~~ 166 (221)
.++|++|+..+ ..|.|+.|.|.++.++..+
T Consensus 166 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 166 INVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp SSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 99999999754 4899999999999987653
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.90 E-value=1.5e-23 Score=159.81 Aligned_cols=147 Identities=13% Similarity=0.248 Sum_probs=122.7
Q ss_pred CChHHHHHHhcccccccCc-------eEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGS-------TVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~-------~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
-++++|.+.|++++.+.|. .+.++ +. ++++||||.|.+.++|++|+ .+++..+.+.+....
T Consensus 16 ~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~--~~---------~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~ 83 (172)
T 2g4b_A 16 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ--IN---------QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIR 83 (172)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE--EE---------TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred cCHHHHHHHHHHHhhhcccccCCCCceeeeE--ec---------CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeec
Confidence 4689999999998777773 33332 33 45799999999999999999 888888877765443
Q ss_pred CCC-CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCC
Q 027630 76 GRG-ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICG 152 (221)
Q Consensus 76 ~~~-~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g 152 (221)
... .......++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..+ ..|.|
T Consensus 84 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 84 RPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp CCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred CCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence 322 223445789999999999999999999999999999999999989999999999999999999999754 48999
Q ss_pred eEEEEEecC
Q 027630 153 QQVAIDSAT 161 (221)
Q Consensus 153 ~~l~V~~a~ 161 (221)
+.|.|.+|.
T Consensus 164 ~~l~V~~As 172 (172)
T 2g4b_A 164 KKLLVQRAS 172 (172)
T ss_dssp EECEEEECC
T ss_pred eEEEEEeCC
Confidence 999999873
No 10
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=1.1e-22 Score=153.59 Aligned_cols=128 Identities=21% Similarity=0.308 Sum_probs=103.7
Q ss_pred ccCCceeEEEeehhhHHHHHHHhCCC------CcCCCC--------CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHH
Q 027630 40 RMSHGGYGAYNAYISAATRYAALGAP------TLYDHP--------GSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 105 (221)
Q Consensus 40 ~~~~~g~~~~~~~~~a~~a~~~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~ 105 (221)
+++|||||.|.+.++|+.|+..++.. ...+.. ..............++|||+|||+++++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 56899999999999999999876421 111111 1111112233455789999999999999999999
Q ss_pred hhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCCCCCC
Q 027630 106 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDDAG 167 (221)
Q Consensus 106 F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~~~~~ 167 (221)
|++||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.++.++....
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 9999999999999999999999999999999999999998655 8999999999999875543
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.89 E-value=1.3e-22 Score=154.85 Aligned_cols=151 Identities=19% Similarity=0.285 Sum_probs=122.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC---CCCCCCC--
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH---PGSFYGR-- 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~---~~~~~~~-- 77 (221)
-++++|.++|++++.|....|..++.+. ..++++||||.|.+.++|..|+..+++..+.+. +......
T Consensus 15 ~te~~l~~~F~~~G~i~~v~i~~~~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~ 87 (175)
T 3nmr_A 15 WSEKDLRELFEQYGAVYEINVLRDRSQN-------PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADS 87 (175)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEEECSSS-------SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred CCHHHHHHHHHhCCCEEEEEEEecCCCC-------CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence 3689999999999999888887776543 125789999999999999999999988666532 2211111
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccC---C
Q 027630 78 GESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC---G 152 (221)
Q Consensus 78 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~---g 152 (221)
........++|||+|||+.+++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|.+|++.++ .+. +
T Consensus 88 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 166 (175)
T 3nmr_A 88 EKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCS 166 (175)
T ss_dssp GCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCS
T ss_pred cccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 12223467899999999999999999999999999999999985 58899999999999999999997654 444 4
Q ss_pred eEEEEEecC
Q 027630 153 QQVAIDSAT 161 (221)
Q Consensus 153 ~~l~V~~a~ 161 (221)
++|.|.+|.
T Consensus 167 ~~l~V~~ad 175 (175)
T 3nmr_A 167 SPMVVKFAD 175 (175)
T ss_dssp SCCEEEECC
T ss_pred CCeEEEecC
Confidence 999999984
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.88 E-value=6.2e-23 Score=157.02 Aligned_cols=145 Identities=16% Similarity=0.207 Sum_probs=118.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC---CC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR---GE 79 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~---~~ 79 (221)
.++++|.++|.+++.+.+ .+.++..+. ++++||||.|.+.++|..|+ .+++..+.+.+...... ..
T Consensus 25 ~t~~~l~~~f~~~g~~~~-~~~~~~~~~---------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 25 KSVAELKVAISELFAKND-LAVVDVRTG---------TNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp SCHHHHHHHHHHHHHHHT-CCCCEEEEE---------TTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSC
T ss_pred CCHHHHHHHHHHhCCcce-EEEEECCCC---------ccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccc
Confidence 368899999999888887 333333343 67899999999999999999 58877777766433222 22
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
......++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..++ .|.|+.|.|
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 334467899999999999999999999999988766 4678899999999999999999998655 899999999
Q ss_pred EecCCC
Q 027630 158 DSATPL 163 (221)
Q Consensus 158 ~~a~~~ 163 (221)
.++.|+
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 999886
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.87 E-value=8.8e-22 Score=161.95 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=130.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC----C
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR----G 78 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~----~ 78 (221)
-++++|.++|..++.|....+..+..+. +++++|||.|.+..+|..|+..+++..+.+.+...... .
T Consensus 107 ~t~~~l~~~f~~~G~i~~~~i~~~~~~g---------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 107 LTQQQFEELVRPFGSLERCFLVYSERTG---------QSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTC---------CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEeeCCCC---------ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 3688999999999998888887776555 78899999999999999999999988777766533222 1
Q ss_pred CCCCCCCCeEEEcCCCCCC-CHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEE
Q 027630 79 ESSQRIGKKIFVGRLPQEA-TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 155 (221)
Q Consensus 79 ~~~~~~~~~l~V~nLp~~~-te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l 155 (221)
.......++|||+|||+.+ ++++|+++|++||.|..|.|+.+. ++.++|+|||+|.+.++|.+|+..++ .|.|+.|
T Consensus 178 ~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 256 (284)
T 3smz_A 178 TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHL 256 (284)
T ss_dssp CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Confidence 2234567899999999995 999999999999999999999985 78899999999999999999997554 8999999
Q ss_pred EEEecCCCCCC
Q 027630 156 AIDSATPLDDA 166 (221)
Q Consensus 156 ~V~~a~~~~~~ 166 (221)
.|.++.++..+
T Consensus 257 ~v~~a~~~~~~ 267 (284)
T 3smz_A 257 RVSFCAPGPPG 267 (284)
T ss_dssp EEEECCSSSCH
T ss_pred EEEEecCCCcc
Confidence 99999987653
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.86 E-value=1.3e-21 Score=161.46 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=119.6
Q ss_pred CChHHHHHHhcccc-cccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCC---
Q 027630 3 KDQDSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRG--- 78 (221)
Q Consensus 3 ~~~~~~~~~~~~~~-~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~--- 78 (221)
-++++|.++|..++ .|....+..++. . ++++||||.|.+.++|..|+..+++..+.+.+.......
T Consensus 129 ~t~~~l~~~f~~~G~~i~~v~i~~~~~-~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 129 YTQRNIRDLLQDINVVALSIRLPSLRF-N---------TSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp CCHHHHHHHHHHTTCCCCEEECC-----------------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEeCCC-C---------CcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 35788888898887 776655554432 2 578999999999999999999998887777654322111
Q ss_pred -----CCCCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeecCCC-CCCcceEEEEEEcCHHHHHHHHhhCC--c
Q 027630 79 -----ESSQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPK-RTGHRGFGFVTFAEEVVADRVSRRSH--E 149 (221)
Q Consensus 79 -----~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~-tg~~~g~afV~f~~~~~a~~al~~~~--~ 149 (221)
.......++|||+|||+. +++++|+++|++||.|..|.|+.+.. |+.++|||||+|.+.++|.+|+ .++ .
T Consensus 199 ~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~ 277 (292)
T 2ghp_A 199 KSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSL 277 (292)
T ss_dssp --------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEE
T ss_pred ccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCE
Confidence 123446789999999999 99999999999999999999999876 6899999999999999999999 665 8
Q ss_pred cCCeEEEEEecCCCC
Q 027630 150 ICGQQVAIDSATPLD 164 (221)
Q Consensus 150 i~g~~l~V~~a~~~~ 164 (221)
|.|+.|.|.++.+++
T Consensus 278 ~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 278 LGNREISVSLADKKP 292 (292)
T ss_dssp ETTEEEEEEECCCCC
T ss_pred ECCcEEEEEEecCCC
Confidence 999999999999863
No 15
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=3.3e-21 Score=145.35 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.++ .|.++.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999998654 88999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+.+....
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9976543
No 16
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=135.43 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
.-.+++|||+|||+++|+++|+++|++||.|.+|.|++++.|++++|||||+|.+.++|++||+.+ ..|.|+.|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999755 489999999999
Q ss_pred cCC
Q 027630 160 ATP 162 (221)
Q Consensus 160 a~~ 162 (221)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 986
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.85 E-value=7.5e-21 Score=156.36 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=121.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221)
-++++|.++|+.++ |....+ . ++++||||.|.+.++|..|+..+++..+.+.+..... .
T Consensus 34 ~te~~l~~~F~~~G-i~~~~~------~---------~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~-----~ 92 (284)
T 3smz_A 34 VTNQEVHDLLSDYE-LKYCFV------D---------KYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL-----Q 92 (284)
T ss_dssp CCHHHHHHHTTTSC-EEEEEE------E---------TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-----C
T ss_pred CCHHHHHHHHHHcC-CEEEEE------e---------cCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe-----c
Confidence 46788999999876 443333 2 5678999999999999999999998888777655443 2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a 160 (221)
...++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..+ ..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34579999999999999999999999999999999999999999999999999999999999654 4889999999999
Q ss_pred CCCCC
Q 027630 161 TPLDD 165 (221)
Q Consensus 161 ~~~~~ 165 (221)
.++..
T Consensus 173 ~~~~~ 177 (284)
T 3smz_A 173 DAGQL 177 (284)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 87654
No 18
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=3.3e-21 Score=142.07 Aligned_cols=125 Identities=22% Similarity=0.347 Sum_probs=83.6
Q ss_pred CceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCC
Q 027630 43 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK 122 (221)
Q Consensus 43 ~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~ 122 (221)
.+.|..+.....+..|++.+++....+................++|||+|||+++++++|+++|++||.|..|.|+.++.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp ------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 45667777777888888887665444444444444455566788999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCCCCCC
Q 027630 123 RTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPLDDAG 167 (221)
Q Consensus 123 tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~~~~~ 167 (221)
+++++|||||+|.+.++|++||..++ .|.|+.|.|.++++.....
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999999999999999999997554 8999999999999765543
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.84 E-value=2.8e-20 Score=148.75 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=114.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCC---
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGE--- 79 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~--- 79 (221)
.++++|.++|++++.|....|..++ ++||||.|.+.++|+.|+..+++..+.+.+........
T Consensus 47 ~te~~L~~~F~~~G~i~~v~i~~~~--------------~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 112 (229)
T 2adc_A 47 VTPQSLFILFGVYGDVQRVKILFNK--------------KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 112 (229)
T ss_dssp CCHHHHHHHHHHHTCEEEEEECCTT--------------SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCC
T ss_pred CCHHHHHHHHHhCCCeEEEEEEECC--------------CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccc
Confidence 3789999999998887765555432 47999999999999999999988777666532211100
Q ss_pred ---------------------------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeecCCCCCC
Q 027630 80 ---------------------------------SSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTG 125 (221)
Q Consensus 80 ---------------------------------~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~ 125 (221)
....+.++|||+|||+.+++++|+++|++|| .|..|.++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----- 187 (229)
T 2adc_A 113 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----- 187 (229)
T ss_dssp CCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----
T ss_pred cCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----
Confidence 0123368999999999999999999999999 9999999653
Q ss_pred cceEEEEEEcCHHHHHHHHhhCC--ccC-CeEEEEEecCCC
Q 027630 126 HRGFGFVTFAEEVVADRVSRRSH--EIC-GQQVAIDSATPL 163 (221)
Q Consensus 126 ~~g~afV~f~~~~~a~~al~~~~--~i~-g~~l~V~~a~~~ 163 (221)
.+|||||+|.+.++|.+|+..++ .|. |+.|.|.+++++
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 46899999999999999998554 788 999999999875
No 20
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=4.5e-21 Score=131.87 Aligned_cols=82 Identities=28% Similarity=0.458 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC-C--ccCCeEEEEEec
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-H--EICGQQVAIDSA 160 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~-~--~i~g~~l~V~~a 160 (221)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.|+.++|||||+|.+.++|++||+.+ + .|.|+.|.|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999754 3 689999999999
Q ss_pred CCCCCC
Q 027630 161 TPLDDA 166 (221)
Q Consensus 161 ~~~~~~ 166 (221)
.|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987654
No 21
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=129.00 Aligned_cols=89 Identities=36% Similarity=0.682 Sum_probs=80.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAID 158 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~ 158 (221)
......++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+ +.+.|.|+.|.|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 84 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 345677999999999999999999999999999999999999999999999999999999999997 3448999999999
Q ss_pred ecCCCCCCCC
Q 027630 159 SATPLDDAGP 168 (221)
Q Consensus 159 ~a~~~~~~~~ 168 (221)
++.++..+.+
T Consensus 85 ~a~~~~~~~~ 94 (99)
T 2dgs_A 85 RAEPRDSKSS 94 (99)
T ss_dssp ECCCCCCCCC
T ss_pred ECCCCcccCC
Confidence 9998876543
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.84 E-value=1.1e-20 Score=153.98 Aligned_cols=143 Identities=22% Similarity=0.231 Sum_probs=121.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221)
-++++|.++|+.++.|....+. ++++||||.|.+.++|..|+..+++..+.+.+......
T Consensus 34 ~te~~l~~~F~~~G~i~~v~i~---------------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a----- 93 (261)
T 3sde_A 34 ITEEDFKRLFERYGEPSEVFIN---------------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA----- 93 (261)
T ss_dssp CCHHHHHHHTGGGCCCSEEEEE---------------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC-----
T ss_pred CCHHHHHHHHHhcCCEEEEEEe---------------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec-----
Confidence 4689999999999888765552 34689999999999999999999998887776655442
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC---c---cCCeEEE
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---E---ICGQQVA 156 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~---~---i~g~~l~ 156 (221)
....+|||+|||..+++++|+++|++||.|..|.|+.+ .+++++|||||+|.+.++|.+||..++ . ..+++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 24579999999999999999999999999999999999 689999999999999999999997652 2 2489999
Q ss_pred EEecCCCCCC
Q 027630 157 IDSATPLDDA 166 (221)
Q Consensus 157 V~~a~~~~~~ 166 (221)
|.++.+....
T Consensus 173 v~~~~~~~~~ 182 (261)
T 3sde_A 173 VEPMEQFDDE 182 (261)
T ss_dssp EEECCCEESS
T ss_pred EeeccccCcc
Confidence 9999876544
No 23
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.2e-20 Score=129.16 Aligned_cols=87 Identities=32% Similarity=0.470 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCCccCCeEEEEEec
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSA 160 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~l~V~~a 160 (221)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||.+++.|.|+.|.|.++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEec
Confidence 34567899999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred CCCCCCC
Q 027630 161 TPLDDAG 167 (221)
Q Consensus 161 ~~~~~~~ 167 (221)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqg_A 91 NSKQSQD 97 (103)
T ss_dssp CTTCCCC
T ss_pred CCCCcCC
Confidence 9887654
No 24
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.84 E-value=8.6e-21 Score=149.43 Aligned_cols=142 Identities=10% Similarity=0.034 Sum_probs=110.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC-----
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR----- 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~----- 77 (221)
-++++|..+|+.++.|...+|..+ +++||||.|.+.++|++|+..|++..+.+.++....+
T Consensus 17 ~~~~~L~~~F~~~G~v~~v~i~~~--------------~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 17 MNCDRVFNVFCLYGNVEKVKFMKS--------------KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCHHHHHHHHTTTSCEEEEEECTT--------------STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEecC--------------CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 368899999999988875555321 2589999999999999999999887777655311100
Q ss_pred ---CC------------------------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCe--EEEEeecCCC
Q 027630 78 ---GE------------------------------SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRI--LDVYVPKDPK 122 (221)
Q Consensus 78 ---~~------------------------------~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i--~~v~~~~~~~ 122 (221)
.. ....+.++|||+|||+++++++|+++|++||.| ..|+++.++
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~- 161 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK- 161 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-
Confidence 00 001235689999999999999999999999998 899988774
Q ss_pred CCCcceEEEEEEcCHHHHHHHHhhCC--ccCCe----EEEEEec
Q 027630 123 RTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ----QVAIDSA 160 (221)
Q Consensus 123 tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~----~l~V~~a 160 (221)
+..+|||||+|.+.++|.+||..++ +|.++ ++.|+++
T Consensus 162 -~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 -SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp -SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred -CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 4567999999999999999997655 66654 5777765
No 25
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-19 Score=129.64 Aligned_cols=88 Identities=33% Similarity=0.530 Sum_probs=79.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-ccCCeEEEE
Q 027630 79 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAI 157 (221)
Q Consensus 79 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~l~V 157 (221)
.......++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.++ .|.++.|.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 90 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 90 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999998655 899999999
Q ss_pred EecCCCCCC
Q 027630 158 DSATPLDDA 166 (221)
Q Consensus 158 ~~a~~~~~~ 166 (221)
.++.+....
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999876443
No 26
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.84 E-value=3.3e-20 Score=152.35 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccC-CeEEEEEec
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC-GQQVAIDSA 160 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~-g~~l~V~~a 160 (221)
..++|||+|||..+++++|+++|++||.|.+|.|+.++ +|||||+|.+.++|++||..++ .|. |+.|.|.|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 45789999999999999999999999999999998763 5899999999999999998665 787 999999998
Q ss_pred C
Q 027630 161 T 161 (221)
Q Consensus 161 ~ 161 (221)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 27
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=145.43 Aligned_cols=141 Identities=11% Similarity=0.114 Sum_probs=114.1
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCC----
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGE---- 79 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~---- 79 (221)
++++|.++|+.++.|....+..++ ++||||.|.+.++|+.|+..+++..+.+.+........
T Consensus 17 ~~~~l~~~F~~~G~i~~v~i~~~~--------------~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 17 TPQSLFILFGVYGDVQRVKILFNK--------------KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CHHHHHHHHHTTCCCSEEECSTTC--------------SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCC--------------CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 789999999998887755554332 47999999999999999999988777766532211100
Q ss_pred --------------------------------CCCCCCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeecCCCCCCc
Q 027630 80 --------------------------------SSQRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGH 126 (221)
Q Consensus 80 --------------------------------~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~ 126 (221)
....+.++|||+|||..+++++|+++|++|| .|..|.++.+ .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~ 157 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----D 157 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----T
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----C
Confidence 0123478999999999999999999999999 9999999764 3
Q ss_pred ceEEEEEEcCHHHHHHHHhhCC--ccC-CeEEEEEecCCC
Q 027630 127 RGFGFVTFAEEVVADRVSRRSH--EIC-GQQVAIDSATPL 163 (221)
Q Consensus 127 ~g~afV~f~~~~~a~~al~~~~--~i~-g~~l~V~~a~~~ 163 (221)
+|+|||+|.+.++|.+|+..++ .|. |+.|.|.+++++
T Consensus 158 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 158 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7899999999999999997554 788 999999999874
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.8e-20 Score=127.04 Aligned_cols=86 Identities=24% Similarity=0.368 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999997665 88999999999
Q ss_pred cCCCCCCC
Q 027630 160 ATPLDDAG 167 (221)
Q Consensus 160 a~~~~~~~ 167 (221)
+.++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99887653
No 29
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.7e-20 Score=128.16 Aligned_cols=88 Identities=24% Similarity=0.439 Sum_probs=80.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
......++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345577899999999999999999999999999999999999999999999999999999999998654 899999999
Q ss_pred EecCCCCCCC
Q 027630 158 DSATPLDDAG 167 (221)
Q Consensus 158 ~~a~~~~~~~ 167 (221)
.++.++..+.
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 1x5u_A 90 NKASAHNKNL 99 (105)
T ss_dssp EETTTTSCCC
T ss_pred EECCCCCcCC
Confidence 9999876654
No 30
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=129.56 Aligned_cols=90 Identities=26% Similarity=0.435 Sum_probs=80.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEE
Q 027630 79 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVA 156 (221)
Q Consensus 79 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~ 156 (221)
.......++|||+|||+++++++|+++|++||.|..|.|+.++.|++++|||||+|.+.++|++||..+ ..|.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344566799999999999999999999999999999999999999999999999999999999999754 489999999
Q ss_pred EEecCCCCCCCC
Q 027630 157 IDSATPLDDAGP 168 (221)
Q Consensus 157 V~~a~~~~~~~~ 168 (221)
|.++++......
T Consensus 87 V~~a~~~~~~~~ 98 (103)
T 2dnm_A 87 VQVARYGRRDLS 98 (103)
T ss_dssp EEECSSCCSCCC
T ss_pred EEECCcCCCCCC
Confidence 999997765443
No 31
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=6.2e-21 Score=152.64 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
..++|||+|||+++++++|+++|++|| .|++|.|++++.|++++|||||+|.+.++|++||+.++ .|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999998665 89999999999
Q ss_pred cCCC
Q 027630 160 ATPL 163 (221)
Q Consensus 160 a~~~ 163 (221)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 32
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.9e-20 Score=128.55 Aligned_cols=87 Identities=25% Similarity=0.424 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999998654 88999999999
Q ss_pred cCCCCCCCC
Q 027630 160 ATPLDDAGP 168 (221)
Q Consensus 160 a~~~~~~~~ 168 (221)
+.++..+.+
T Consensus 92 a~~~~~~~~ 100 (103)
T 2cq0_A 92 AKPSTNSGP 100 (103)
T ss_dssp SSCCCCSCC
T ss_pred CCCCCCCCC
Confidence 998876544
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=5.5e-20 Score=130.82 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.|+.|++++|||||+|.+.++|++||+.++ .|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999999999999999999999999999997554 899999999999
Q ss_pred CCCCC
Q 027630 161 TPLDD 165 (221)
Q Consensus 161 ~~~~~ 165 (221)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 34
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=1.2e-19 Score=129.95 Aligned_cols=87 Identities=24% Similarity=0.399 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.++ .|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4566899999999999999999999999999999999999999999999999999999999997554 89999999999
Q ss_pred cCCCCCCCC
Q 027630 160 ATPLDDAGP 168 (221)
Q Consensus 160 a~~~~~~~~ 168 (221)
++++..+.+
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpz_A 102 KRSKNDSKS 110 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCcCCC
Confidence 998876554
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=125.52 Aligned_cols=84 Identities=27% Similarity=0.483 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a 160 (221)
...++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++||+.+ ..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999754 4899999999999
Q ss_pred CCCCCC
Q 027630 161 TPLDDA 166 (221)
Q Consensus 161 ~~~~~~ 166 (221)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 987654
No 36
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.82 E-value=3.5e-20 Score=152.90 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=116.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221)
-++++|.++|+.++.|....|..+.. .+++||||.|.+.++|..|+. +++..+.+.+.....
T Consensus 53 ~t~~~l~~~F~~~G~i~~v~i~~~~~-----------~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~------ 114 (292)
T 2ghp_A 53 YNQNKVYKYFKHCGPIIHVDVADSLK-----------KNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH------ 114 (292)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTT-----------SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE------
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCC-----------CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE------
Confidence 46889999999999888777766542 246999999999999999995 788777776654433
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
...++|||+|||+.+++++|+++|++|| .|..|.++.++. +.++|||||+|.+.++|.+|+..+ ..|.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 2478999999999999999999999999 999999998865 778999999999999999999754 488999999999
Q ss_pred cCCCCCCC
Q 027630 160 ATPLDDAG 167 (221)
Q Consensus 160 a~~~~~~~ 167 (221)
+.|.....
T Consensus 194 a~~~~~~~ 201 (292)
T 2ghp_A 194 SNPLEKSK 201 (292)
T ss_dssp CCCC----
T ss_pred CCCCcccc
Confidence 99876543
No 37
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=128.25 Aligned_cols=87 Identities=28% Similarity=0.473 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.++ .|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999997544 89999999999
Q ss_pred cCCCCCCCC
Q 027630 160 ATPLDDAGP 168 (221)
Q Consensus 160 a~~~~~~~~ 168 (221)
+.++..+.+
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998876543
No 38
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=127.33 Aligned_cols=87 Identities=32% Similarity=0.489 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.++ .|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997544 8999999999
Q ss_pred ecCCCCCCC
Q 027630 159 SATPLDDAG 167 (221)
Q Consensus 159 ~a~~~~~~~ 167 (221)
++.++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 1x5s_A 88 QAGKSSDNR 96 (102)
T ss_dssp EEECCCCCC
T ss_pred ECCCCCCCC
Confidence 999876543
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=5.3e-19 Score=126.45 Aligned_cols=88 Identities=32% Similarity=0.442 Sum_probs=80.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
......++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.++ .|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999999999999999999999999999997554 899999999
Q ss_pred EecCCCCCCC
Q 027630 158 DSATPLDDAG 167 (221)
Q Consensus 158 ~~a~~~~~~~ 167 (221)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9999876654
No 40
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=126.82 Aligned_cols=88 Identities=27% Similarity=0.496 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecC-CCCCCcceEEEEEEcCHHHHHHHHhhC---CccCCeEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKD-PKRTGHRGFGFVTFAEEVVADRVSRRS---HEICGQQV 155 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~-~~tg~~~g~afV~f~~~~~a~~al~~~---~~i~g~~l 155 (221)
......++|||+|||+++++++|+++|++||.|..|.|+.+ +.++.++|||||+|.+.++|++||..+ ..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567799999999999999999999999999999999999 789999999999999999999999754 48999999
Q ss_pred EEEecCCCCCCC
Q 027630 156 AIDSATPLDDAG 167 (221)
Q Consensus 156 ~V~~a~~~~~~~ 167 (221)
.|.++.++....
T Consensus 90 ~v~~a~~~~~~~ 101 (107)
T 2cph_A 90 VLEWADSEVTVQ 101 (107)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEeCCCCCCCC
Confidence 999999876654
No 41
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-19 Score=128.89 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+.++ .|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 89999999999999999999998654 89999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
++++...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876543
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=126.58 Aligned_cols=85 Identities=21% Similarity=0.450 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCC-CCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR-TGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~t-g~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
+..+.++|||+|||+++++++|+++|++|| |..|.|+.++.+ ++++|||||+|.+.++|++|| .++ .|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999999988 999999999999999999999 554 899999999
Q ss_pred EecCCCCCCC
Q 027630 158 DSATPLDDAG 167 (221)
Q Consensus 158 ~~a~~~~~~~ 167 (221)
.++.++..+.
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9999876654
No 43
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=126.11 Aligned_cols=85 Identities=27% Similarity=0.471 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEE-EeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
...++|||+|||+++++++|+++|++||.|..| .|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 999999999999999999999999999998654 88999999999
Q ss_pred cCCCCCCC
Q 027630 160 ATPLDDAG 167 (221)
Q Consensus 160 a~~~~~~~ 167 (221)
+.++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99876554
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=128.70 Aligned_cols=81 Identities=17% Similarity=0.347 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC--eEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC------ccCCe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR--ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH------EICGQ 153 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~------~i~g~ 153 (221)
...-.+|||+|||+++|+++|+++|++||. |.+|++++|+.|++++|||||+|.+.++|++||+.++ .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456789999999999999999999999995 6799999999999999999999999999999997543 48999
Q ss_pred EEEEEecCC
Q 027630 154 QVAIDSATP 162 (221)
Q Consensus 154 ~l~V~~a~~ 162 (221)
.|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999974
No 45
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=2.6e-19 Score=132.26 Aligned_cols=86 Identities=22% Similarity=0.398 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+.++ .|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998665 8999999999
Q ss_pred ecCCCCCC
Q 027630 159 SATPLDDA 166 (221)
Q Consensus 159 ~a~~~~~~ 166 (221)
++.++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99987654
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=125.76 Aligned_cols=87 Identities=22% Similarity=0.331 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAI 157 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V 157 (221)
......++|||+|||+.+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|++||..+ ..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34557899999999999999999999999999999999998 8889999999999999999999754 4899999999
Q ss_pred EecCCCCCCCC
Q 027630 158 DSATPLDDAGP 168 (221)
Q Consensus 158 ~~a~~~~~~~~ 168 (221)
.++.++..+.+
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2d9p_A 88 ALAQRKEERQS 98 (103)
T ss_dssp EECSSCCCCCC
T ss_pred EEecccccCCC
Confidence 99998876544
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=1.3e-19 Score=127.77 Aligned_cols=88 Identities=25% Similarity=0.478 Sum_probs=79.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc---CCeE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQQ 154 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i---~g~~ 154 (221)
......++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||..++ .+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345667899999999999999999999999999999999999999999999999999999999997554 55 8899
Q ss_pred EEEEecCCCCCCC
Q 027630 155 VAIDSATPLDDAG 167 (221)
Q Consensus 155 l~V~~a~~~~~~~ 167 (221)
|.|.++.++..+.
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999999876543
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=3.4e-19 Score=125.35 Aligned_cols=86 Identities=27% Similarity=0.461 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCC---eEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG---QQVA 156 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g---~~l~ 156 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.++ .+.+ +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4567999999999999999999999999999999999997 78999999999999999999997554 6777 9999
Q ss_pred EEecCCCCCCCC
Q 027630 157 IDSATPLDDAGP 168 (221)
Q Consensus 157 V~~a~~~~~~~~ 168 (221)
|.++.++..+.+
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999998877654
No 49
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=3.3e-19 Score=125.06 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
+....++|||+|||+++++++|+++|++|| |..|.|+.++.+++++|||||+|.+.++|++|| .++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999999999999999999999999999999 554 8899999999
Q ss_pred ecCCCCCCC
Q 027630 159 SATPLDDAG 167 (221)
Q Consensus 159 ~a~~~~~~~ 167 (221)
++.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 999876543
No 50
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-19 Score=125.96 Aligned_cols=88 Identities=24% Similarity=0.400 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh--------CCccCC
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--------SHEICG 152 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~--------~~~i~g 152 (221)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||.. ...|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 345678999999999999999999999999999999999999999999999999999999999974 447899
Q ss_pred eEEEEEecCCCCCCCC
Q 027630 153 QQVAIDSATPLDDAGP 168 (221)
Q Consensus 153 ~~l~V~~a~~~~~~~~ 168 (221)
+.|.|.++.++.....
T Consensus 91 ~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAAS 106 (111)
T ss_dssp CEEEEECCCCCCCCCC
T ss_pred EEEEEEECCCCccCCC
Confidence 9999999998866543
No 51
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.8e-19 Score=123.56 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+.++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999997 89999999999999999999997554 89999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+.++..+
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9987653
No 52
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=2e-19 Score=127.64 Aligned_cols=86 Identities=35% Similarity=0.599 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-ccCCeEEEEEe
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDS 159 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~l~V~~ 159 (221)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999998654 88999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 53
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=127.24 Aligned_cols=87 Identities=32% Similarity=0.528 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeEEEEEe
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 159 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~l~V~~ 159 (221)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 356779999999999999999999999999999999999999999999999999999999999975 3489999999999
Q ss_pred cCCCCCCC
Q 027630 160 ATPLDDAG 167 (221)
Q Consensus 160 a~~~~~~~ 167 (221)
+.++....
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 99887654
No 54
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.3e-19 Score=120.80 Aligned_cols=79 Identities=29% Similarity=0.445 Sum_probs=74.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecCCC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPL 163 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~~~ 163 (221)
.+|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|+..+ ..|.|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999999999999999999999999999754 4899999999999987
Q ss_pred C
Q 027630 164 D 164 (221)
Q Consensus 164 ~ 164 (221)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-19 Score=125.27 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--c-cCCeEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSR-FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E-ICGQQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~-i~g~~l~V 157 (221)
..+.++|||+|||+++++++|+++|++ ||.|..|.|+.++ +++++|||||+|.+.++|++||..++ . |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 99999999999999999999998665 6 99999999
Q ss_pred EecCCCCCCCC
Q 027630 158 DSATPLDDAGP 168 (221)
Q Consensus 158 ~~a~~~~~~~~ 168 (221)
.++.++..+..
T Consensus 85 ~~a~~~~~~~~ 95 (104)
T 2dhg_A 85 SVAIPKASRVK 95 (104)
T ss_dssp CBCCCCCSCCC
T ss_pred EEccCCCcCCC
Confidence 99988765543
No 56
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=126.89 Aligned_cols=87 Identities=16% Similarity=0.238 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--Ccc
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--------DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEI 150 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i 150 (221)
.....++|||+|||+++++++|+++|++||.|. .|.|+.++.+++++|||||+|.+.++|++||..+ ..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999998 6999999999999999999999999999999754 489
Q ss_pred CCeEEEEEecCCCCCCC
Q 027630 151 CGQQVAIDSATPLDDAG 167 (221)
Q Consensus 151 ~g~~l~V~~a~~~~~~~ 167 (221)
.|+.|.|.+++++....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999999876643
No 57
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=124.35 Aligned_cols=86 Identities=20% Similarity=0.340 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCC---CCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPK---RTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~---tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
...++|||+|||+++++++|+++|++||.|..|.|+.++. |+.++|||||+|.+.++|++||..++ .|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999998876 66899999999999999999998654 899999999
Q ss_pred EecCCCCCCCC
Q 027630 158 DSATPLDDAGP 168 (221)
Q Consensus 158 ~~a~~~~~~~~ 168 (221)
.++.++....+
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99998765543
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=121.73 Aligned_cols=81 Identities=31% Similarity=0.443 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a 160 (221)
...++|||+|||+++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|++|++.+ ..|.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999754 4899999999999
Q ss_pred CCC
Q 027630 161 TPL 163 (221)
Q Consensus 161 ~~~ 163 (221)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.4e-19 Score=121.40 Aligned_cols=81 Identities=25% Similarity=0.471 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.++ .|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35567899999999999999999999999999999999999999999999999999999999998655 8899999999
Q ss_pred ecC
Q 027630 159 SAT 161 (221)
Q Consensus 159 ~a~ 161 (221)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 60
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=6.8e-20 Score=137.25 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=96.8
Q ss_pred ccCCceeEEEeehhhHHHHHHHh-CCCCcCCCCCCC-----------------CCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 027630 40 RMSHGGYGAYNAYISAATRYAAL-GAPTLYDHPGSF-----------------YGRGESSQRIGKKIFVGRLPQEATAED 101 (221)
Q Consensus 40 ~~~~~g~~~~~~~~~a~~a~~~~-~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~V~nLp~~~te~~ 101 (221)
.-+|+++++|.+.++|++|+..+ ++..+.+ +... ...........++|||+|||+++++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 44677888899999999999888 5544444 3111 111233345678999999999999999
Q ss_pred HHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecCCCC
Q 027630 102 LRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPLD 164 (221)
Q Consensus 102 l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~~~~ 164 (221)
|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++||..+ ..|.|+.|.|.++.++.
T Consensus 90 l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999887 6899999999999999999754 48999999999998764
No 61
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=6.1e-19 Score=119.82 Aligned_cols=80 Identities=30% Similarity=0.655 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC-CccCCeEEEEEe
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDS 159 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~-~~i~g~~l~V~~ 159 (221)
.....++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++||+.. +.|.|+.|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3557789999999999999999999999999999999999999999999999999999999999743 489999999987
Q ss_pred c
Q 027630 160 A 160 (221)
Q Consensus 160 a 160 (221)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 62
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2.5e-19 Score=130.20 Aligned_cols=85 Identities=21% Similarity=0.335 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.+ ..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 455789999999999999999999999999999999999999999999999999999999999754 489999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9877554
No 63
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-18 Score=121.42 Aligned_cols=88 Identities=31% Similarity=0.539 Sum_probs=77.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEE
Q 027630 79 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVA 156 (221)
Q Consensus 79 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~ 156 (221)
.......++|||+|||+++++++|+++|++||.|..|.|+.++.+ ++|||||+|.+.++|++||..+ ..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999999988643 8999999999999999999754 489999999
Q ss_pred EEecCCCCCCCC
Q 027630 157 IDSATPLDDAGP 168 (221)
Q Consensus 157 V~~a~~~~~~~~ 168 (221)
|.++.++.....
T Consensus 87 v~~a~~~~~~~~ 98 (103)
T 2cq3_A 87 VNNATARVMTNS 98 (103)
T ss_dssp EEECCSSCCCCC
T ss_pred EEEcccCCCCCC
Confidence 999998866543
No 64
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=127.26 Aligned_cols=85 Identities=35% Similarity=0.624 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeEEEEEecC
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSAT 161 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~l~V~~a~ 161 (221)
...++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||.. ...|.|+.|.|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 3468999999999999999999999999999999999999999999999999999999999975 348999999999999
Q ss_pred CCCCCC
Q 027630 162 PLDDAG 167 (221)
Q Consensus 162 ~~~~~~ 167 (221)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 887644
No 65
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=125.57 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..+ ..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999754 489999999999
Q ss_pred cCCCCC
Q 027630 160 ATPLDD 165 (221)
Q Consensus 160 a~~~~~ 165 (221)
+.++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=125.36 Aligned_cols=85 Identities=25% Similarity=0.460 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAI 157 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V 157 (221)
......++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.+ ..|.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33556789999999999999999999999999999999999999999999999999999999999744 4899999999
Q ss_pred EecCCCC
Q 027630 158 DSATPLD 164 (221)
Q Consensus 158 ~~a~~~~ 164 (221)
.+++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9999875
No 67
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=7.1e-20 Score=125.46 Aligned_cols=82 Identities=21% Similarity=0.360 Sum_probs=69.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 161 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~ 161 (221)
.+|||+|||+++++++|+++|++|| .|.+|.++.++.+++++|||||+|.+.++|++||+.++ .|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999997554 8999999999999
Q ss_pred CCCCCC
Q 027630 162 PLDDAG 167 (221)
Q Consensus 162 ~~~~~~ 167 (221)
|.....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876543
No 68
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-18 Score=121.14 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+ ++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456799999999999999999999999999999999998554 68999999999999999998554 8899999999
Q ss_pred ecCCCCCCC
Q 027630 159 SATPLDDAG 167 (221)
Q Consensus 159 ~a~~~~~~~ 167 (221)
++.++..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 999876544
No 69
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=1.1e-18 Score=151.74 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
...++|||+|||+.+|+++|.++|++||.|+.|.|+.++.|++++|||||+|.+.++|++||..++ .|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999997655 899999999999
Q ss_pred CCCCCC
Q 027630 161 TPLDDA 166 (221)
Q Consensus 161 ~~~~~~ 166 (221)
.++...
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 987653
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.3e-19 Score=121.29 Aligned_cols=82 Identities=28% Similarity=0.403 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
...+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|+..++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998554 8999999999
Q ss_pred ecCC
Q 027630 159 SATP 162 (221)
Q Consensus 159 ~a~~ 162 (221)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 71
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.9e-19 Score=122.80 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE-EEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeE----
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL-DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ---- 154 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~---- 154 (221)
....++|||+|||+++++++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++||+.++ .|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45679999999999999999999999999999 99999999999999999999999999999998655 788988
Q ss_pred EEEEecCCCC
Q 027630 155 VAIDSATPLD 164 (221)
Q Consensus 155 l~V~~a~~~~ 164 (221)
|+|.+|.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998664
No 72
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=7.4e-19 Score=121.72 Aligned_cols=81 Identities=16% Similarity=0.365 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecCC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATP 162 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~~ 162 (221)
.++|||+|||.++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++|++.+ ..|.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999999999999999999999999999999754 489999999999997
Q ss_pred CCC
Q 027630 163 LDD 165 (221)
Q Consensus 163 ~~~ 165 (221)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 73
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=4.5e-19 Score=127.00 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 161 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~ 161 (221)
...+|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++||+.+ ..|.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 357899999999999999999999999999999998853 37899999999999999999754 48999999999998
Q ss_pred CCCCCC
Q 027630 162 PLDDAG 167 (221)
Q Consensus 162 ~~~~~~ 167 (221)
++..+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 876543
No 74
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=5.1e-19 Score=125.54 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..+ ..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 456689999999999999999999999999999999999999999999999999999999999754 489999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+.++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9877543
No 75
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=4.7e-19 Score=129.49 Aligned_cols=85 Identities=28% Similarity=0.365 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~ 158 (221)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.+ ..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999854 48999999999
Q ss_pred ecCCCCC
Q 027630 159 SATPLDD 165 (221)
Q Consensus 159 ~a~~~~~ 165 (221)
++.++..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9998754
No 76
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=5.2e-19 Score=119.56 Aligned_cols=80 Identities=29% Similarity=0.485 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
..+.++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.+ ..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999644 489999999999
Q ss_pred cC
Q 027630 160 AT 161 (221)
Q Consensus 160 a~ 161 (221)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 77
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-18 Score=120.57 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCC-----e
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG-----Q 153 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g-----~ 153 (221)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.++ .|.+ +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3566899999999999999999999999999999999876 799999999999999998765 7888 9
Q ss_pred EEEEEecCCCCCC
Q 027630 154 QVAIDSATPLDDA 166 (221)
Q Consensus 154 ~l~V~~a~~~~~~ 166 (221)
.|.|.++.++...
T Consensus 84 ~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 84 YIRVKVDGPRSPS 96 (108)
T ss_dssp EEEEEESSCCSCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999986544
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=120.75 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 155 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l 155 (221)
....++|||+|||+++++++|+ ++|++||.|.+|.|+.++.+ ++||||+|.+.++|++||+.++ .|.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456899999999999999999 99999999999999998776 7899999999999999998655 8999999
Q ss_pred EEEecCCCCCC
Q 027630 156 AIDSATPLDDA 166 (221)
Q Consensus 156 ~V~~a~~~~~~ 166 (221)
+|.+++++...
T Consensus 83 ~V~~a~~~~~~ 93 (96)
T 2dgx_A 83 LVSLATGASGP 93 (96)
T ss_dssp EEEECCCSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999877543
No 79
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=121.51 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--Cc
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HE 149 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~ 149 (221)
......++|||+|||+++++++|+++|++||.|.. |.++.++.+++++|||||+|.+.++|++||+.+ ..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999999 999999999999999999999999999999744 48
Q ss_pred cCCeEEEEEecC
Q 027630 150 ICGQQVAIDSAT 161 (221)
Q Consensus 150 i~g~~l~V~~a~ 161 (221)
|.|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 80
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=117.93 Aligned_cols=82 Identities=11% Similarity=0.247 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++| .|..|.|+.+ .+++++|||||+|.+.++|++||. ++ .|.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 45667999999999999999999999999 9999999999 889999999999999999999998 65 8899999999
Q ss_pred ecCCCCC
Q 027630 159 SATPLDD 165 (221)
Q Consensus 159 ~a~~~~~ 165 (221)
++.++..
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9988754
No 81
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.8e-18 Score=120.72 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+.+ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999996 5889999999999999999999754 48999999999
Q ss_pred ecCCCCCC
Q 027630 159 SATPLDDA 166 (221)
Q Consensus 159 ~a~~~~~~ 166 (221)
++.+...+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99865443
No 82
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=123.48 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC----CccCCeEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~----~~i~g~~l~V 157 (221)
..+.++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|++||+.+ ..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999875 689999999999999999743 3789999999
Q ss_pred EecCCCCCCCC
Q 027630 158 DSATPLDDAGP 168 (221)
Q Consensus 158 ~~a~~~~~~~~ 168 (221)
.+|+++.....
T Consensus 87 ~~A~~~~~~~~ 97 (105)
T 1sjq_A 87 QFSNHKELKTD 97 (105)
T ss_dssp CCCSSSSCCCT
T ss_pred EEcCCCCCCcc
Confidence 99998765543
No 83
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-18 Score=120.48 Aligned_cols=84 Identities=18% Similarity=0.301 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++||.|.. |.|+.+ .+++++|||||+|.+.++|++||.. ...|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 889988 8899999999999999999999975 448999999999
Q ss_pred ecCCCCC
Q 027630 159 SATPLDD 165 (221)
Q Consensus 159 ~a~~~~~ 165 (221)
.+.+++-
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9987654
No 84
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-18 Score=120.63 Aligned_cols=83 Identities=20% Similarity=0.393 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++||.|..|.|+.+ +.+++||||+|.+.++|++||+.++ .|.++.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999654 4478999999999999999997554 8999999999
Q ss_pred ecCCCCCC
Q 027630 159 SATPLDDA 166 (221)
Q Consensus 159 ~a~~~~~~ 166 (221)
+++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99887554
No 85
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=121.49 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEe
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 159 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~ 159 (221)
.....++|||+|||+++++++|+++|++||. ..|.|+.++ +++++|||||+|.+.++|++||+ +.+.|.++.|.|..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3456789999999999999999999999995 499999997 89999999999999999999995 33489999999999
Q ss_pred cCCCC
Q 027630 160 ATPLD 164 (221)
Q Consensus 160 a~~~~ 164 (221)
+.+.+
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88655
No 86
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=2.3e-18 Score=117.37 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATP 162 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~ 162 (221)
.++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|+ .++ .|.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999999999999999999999999999 544 89999999999986
Q ss_pred C
Q 027630 163 L 163 (221)
Q Consensus 163 ~ 163 (221)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 87
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=118.83 Aligned_cols=82 Identities=21% Similarity=0.407 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCC-cceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEec
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG-HRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 160 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~-~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a 160 (221)
..++|||+|||+++++++|+++|++||.|..|.++.++.++. ++|||||+|.+.++|++|+..+ ..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999887766 8999999999999999999754 4899999999999
Q ss_pred CCCCC
Q 027630 161 TPLDD 165 (221)
Q Consensus 161 ~~~~~ 165 (221)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 88
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=1.4e-19 Score=126.41 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCC-e
Q 027630 83 RIGKKIFVGRLPQ------EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICG-Q 153 (221)
Q Consensus 83 ~~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g-~ 153 (221)
...++|||+|||. ++++++|+++|++||.|.+|.|+.++.|++++|||||+|.+.++|++||+.+ ..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 9999999999999999999999999999999999999999999999999754 48998 9
Q ss_pred EEEEEecCCCC
Q 027630 154 QVAIDSATPLD 164 (221)
Q Consensus 154 ~l~V~~a~~~~ 164 (221)
.|.|.++.|++
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999998754
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2.6e-18 Score=117.83 Aligned_cols=83 Identities=23% Similarity=0.364 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.+ +++++|||||+|.+.++|++||+.+ ..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999874 7889999999999999999999754 489999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+++....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9987653
No 90
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=2.2e-18 Score=123.70 Aligned_cols=81 Identities=25% Similarity=0.388 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.++ .|.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998654 8899999999
Q ss_pred ecC
Q 027630 159 SAT 161 (221)
Q Consensus 159 ~a~ 161 (221)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 91
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-18 Score=119.88 Aligned_cols=85 Identities=26% Similarity=0.464 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEee-cCCCCCCcceEEEEEEcCHHHHHHHHhhC----CccCCeEEE
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVP-KDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 156 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~-~~~~tg~~~g~afV~f~~~~~a~~al~~~----~~i~g~~l~ 156 (221)
...++|||+|||+++++++|+++|++||. |..|.++ .++.++.++|||||+|.+.++|++||..+ ..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 88889999999999999999999999754 478999999
Q ss_pred EEecCCCCCCC
Q 027630 157 IDSATPLDDAG 167 (221)
Q Consensus 157 V~~a~~~~~~~ 167 (221)
|.++.++....
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999876543
No 92
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-18 Score=118.88 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC----CccCCeEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 156 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~----~~i~g~~l~ 156 (221)
...+.++|||+|||+.+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.+ ..|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999998864 789999999999999999743 368999999
Q ss_pred EEecCCCCCCC
Q 027630 157 IDSATPLDDAG 167 (221)
Q Consensus 157 V~~a~~~~~~~ 167 (221)
|.+++++....
T Consensus 85 V~~a~~~~~~~ 95 (101)
T 2cq1_A 85 IQYSNHKELKT 95 (101)
T ss_dssp EEECSCSSCCC
T ss_pred EEEcCcccCcC
Confidence 99999776554
No 93
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=126.81 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE--EEeecCCCCCCcceEEEEEEcCHHHHHHHHhh--CC----ccCC
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--SH----EICG 152 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~--~~----~i~g 152 (221)
.....++|||+|||+++++++|+++|++||.|.. |+|++|+.|++++|||||+|.+. +|++||.. .. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999999999999999999999 99999864 44 7899
Q ss_pred eEEEEEecCCCCCCC
Q 027630 153 QQVAIDSATPLDDAG 167 (221)
Q Consensus 153 ~~l~V~~a~~~~~~~ 167 (221)
+.|.|.++.++....
T Consensus 98 r~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 98 KTINVEFAKGSKRDM 112 (131)
T ss_dssp CCCCCEECCCSCCCC
T ss_pred EEEEEEECCCCCCCC
Confidence 999999999875543
No 94
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=130.80 Aligned_cols=80 Identities=16% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFG--RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
..++|||+|||+++++++|+++|++|| .|.+|.|+.|+.|++++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999999999999999999999999999998654 89999999999
Q ss_pred cCCC
Q 027630 160 ATPL 163 (221)
Q Consensus 160 a~~~ 163 (221)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 95
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.2e-18 Score=117.45 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++||.| .++.+ .+++++|||||+|.+.++|++||..++ .|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 35567999999999999999999999999977 56666 778899999999999999999998665 8899999999
Q ss_pred ecCCCCCC
Q 027630 159 SATPLDDA 166 (221)
Q Consensus 159 ~a~~~~~~ 166 (221)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99987543
No 96
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=3.1e-18 Score=120.81 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=74.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~ 158 (221)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+.+ ..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999997 8999999999999999999999854 48999999999
Q ss_pred ecC
Q 027630 159 SAT 161 (221)
Q Consensus 159 ~a~ 161 (221)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 97
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=120.57 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+.++ .|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4456899999999999999999999999999988888888999999999999999999999997665 89999999999
Q ss_pred cCCC
Q 027630 160 ATPL 163 (221)
Q Consensus 160 a~~~ 163 (221)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 98
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.9e-19 Score=123.50 Aligned_cols=84 Identities=27% Similarity=0.514 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
...++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.++ .|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 346899999999999999999999999999999999999999999999999999999999997554 889999999999
Q ss_pred CCCCCC
Q 027630 161 TPLDDA 166 (221)
Q Consensus 161 ~~~~~~ 166 (221)
.++..+
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 987654
No 99
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=118.52 Aligned_cols=81 Identities=21% Similarity=0.367 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~ 158 (221)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++. ++++|||||+|.+.++|++||+.+ ..|.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999975 889999999999999999999754 48999999999
Q ss_pred ecCC
Q 027630 159 SATP 162 (221)
Q Consensus 159 ~a~~ 162 (221)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 100
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=121.24 Aligned_cols=84 Identities=20% Similarity=0.269 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHhhccCCeEEEEeecCCCCC---CcceEEEEEEcCHHHHHHHHhhCC--ccCCe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLR---RYFSRFGRILDVYVPKDPKRT---GHRGFGFVTFAEEVVADRVSRRSH--EICGQ 153 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~~~~~~~tg---~~~g~afV~f~~~~~a~~al~~~~--~i~g~ 153 (221)
....++|||+|||+++++++|+ ++|++||.|.+|.|+.++.++ .++|||||+|.+.++|++||+.++ .|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4457899999999999999999 999999999999999987754 466999999999999999998654 89999
Q ss_pred EEEEEecCCCCC
Q 027630 154 QVAIDSATPLDD 165 (221)
Q Consensus 154 ~l~V~~a~~~~~ 165 (221)
.|.|.+|.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998763
No 101
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=121.09 Aligned_cols=80 Identities=15% Similarity=0.319 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEec
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 160 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~a 160 (221)
....++|||+|||+++|+++|+++|++||.|.+|.|++++. +.++|||||+|.+.++|++||. +.+.|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34568999999999999999999999999999999999977 9999999999999999999997 334899999999987
Q ss_pred CC
Q 027630 161 TP 162 (221)
Q Consensus 161 ~~ 162 (221)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 102
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.8e-18 Score=118.36 Aligned_cols=83 Identities=29% Similarity=0.440 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|+.|. .|.++.++.+++++|||||+|.+.++|++||..+ ..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 355678999999999999999999999773 7788888889999999999999999999999754 48999999999
Q ss_pred ecCCCCCC
Q 027630 159 SATPLDDA 166 (221)
Q Consensus 159 ~a~~~~~~ 166 (221)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99987653
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=121.74 Aligned_cols=82 Identities=21% Similarity=0.446 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCC-CCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDP-KRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~-~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
.....++|||+|||+++++++|+++|++|| |.+|.|+.++ .+++++|||||+|.+.++|++|| .++ .|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 355679999999999999999999999999 9999999998 68999999999999999999999 554 899999999
Q ss_pred EecCCCC
Q 027630 158 DSATPLD 164 (221)
Q Consensus 158 ~~a~~~~ 164 (221)
.+++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 104
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=1.7e-17 Score=116.35 Aligned_cols=79 Identities=27% Similarity=0.388 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
..+.++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++||+.++ .|.++.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4567899999999999999999999999999999986 3599999999999999998554 89999999999
Q ss_pred cCCCCCCCC
Q 027630 160 ATPLDDAGP 168 (221)
Q Consensus 160 a~~~~~~~~ 168 (221)
+.++.....
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 998766543
No 105
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=1.5e-18 Score=114.58 Aligned_cols=74 Identities=42% Similarity=0.719 Sum_probs=69.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEec
Q 027630 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSA 160 (221)
Q Consensus 87 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~a 160 (221)
+|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++ +...|.|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999997 334899999999875
No 106
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1.3e-18 Score=128.12 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 155 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l 155 (221)
.....++|||+|||+++|+++|+++|++||. |..|.|+.++. ++++|||||+|.+.++|++||+ ++ .|.++.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999977 9999999999999999999998 54 8999999
Q ss_pred EEEecCCCC
Q 027630 156 AIDSATPLD 164 (221)
Q Consensus 156 ~V~~a~~~~ 164 (221)
.|.++.+++
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999987553
No 107
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.8e-19 Score=126.52 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 161 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~ 161 (221)
..++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|| .++ .|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999999999999999999999999999 554 8999999999998
Q ss_pred CCCCC
Q 027630 162 PLDDA 166 (221)
Q Consensus 162 ~~~~~ 166 (221)
++..+
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 76543
No 108
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=6.1e-18 Score=117.53 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC----ccCCeEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~l~V 157 (221)
..+.++|||+|||+.+++++|+++|++||.|.+|.+++ .||||||+|.+.++|.+|+..++ .|.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45678999999999999999999999999999999985 46899999999999999997543 478999999
Q ss_pred EecCCCC
Q 027630 158 DSATPLD 164 (221)
Q Consensus 158 ~~a~~~~ 164 (221)
.+|++++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 109
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.7e-18 Score=115.15 Aligned_cols=78 Identities=26% Similarity=0.596 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.++ ++||||+|.+.++|++|+..++ .|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999997 5799999999999999997554 79999999999
Q ss_pred cCCCCCCC
Q 027630 160 ATPLDDAG 167 (221)
Q Consensus 160 a~~~~~~~ 167 (221)
+.++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876643
No 110
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=123.01 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCe-EEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRI-LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.| ..|.|+.++ +++++|||||+|.+.++|++||.. ...|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4567899999999999999999999999999 889999998 999999999999999999999975 3489999999999
Q ss_pred cCCCC
Q 027630 160 ATPLD 164 (221)
Q Consensus 160 a~~~~ 164 (221)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98765
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=117.07 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--C--ccCCeEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--H--EICGQQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~--~i~g~~l~V 157 (221)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.+ + .|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998863 689999999999999999743 3 589999999
Q ss_pred EecCCCCCCC
Q 027630 158 DSATPLDDAG 167 (221)
Q Consensus 158 ~~a~~~~~~~ 167 (221)
.+++++....
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9999876543
No 112
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=1.8e-17 Score=120.07 Aligned_cols=86 Identities=20% Similarity=0.269 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999998554 8999999999
Q ss_pred ecCCCCCCC
Q 027630 159 SATPLDDAG 167 (221)
Q Consensus 159 ~a~~~~~~~ 167 (221)
+|.+.....
T Consensus 110 ~a~~~~~~~ 118 (124)
T 2kt5_A 110 LVASQIDLE 118 (124)
T ss_dssp EECCTTCCC
T ss_pred EeCCCCCCC
Confidence 998765543
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=121.79 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC----CccCCeEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS----HEICGQQVA 156 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~----~~i~g~~l~ 156 (221)
...+.++|||+|||+++++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.+ ..|.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999875 789999999999999999743 379999999
Q ss_pred EEecCCCCCCCC
Q 027630 157 IDSATPLDDAGP 168 (221)
Q Consensus 157 V~~a~~~~~~~~ 168 (221)
|.+|+++.....
T Consensus 101 V~~a~~k~~~~~ 112 (119)
T 2ad9_A 101 IQFSNHKELKTD 112 (119)
T ss_dssp EEECSSSSCCCC
T ss_pred EEEccCCCCCcc
Confidence 999998766543
No 114
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=4.3e-18 Score=129.44 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4456799999999999999999999999999999999999999999999999999999999997544 89999999999
Q ss_pred cCCCCCCC
Q 027630 160 ATPLDDAG 167 (221)
Q Consensus 160 a~~~~~~~ 167 (221)
+.++..+.
T Consensus 149 a~~~~~~~ 156 (165)
T 1rk8_A 149 CFVKGPKR 156 (165)
T ss_dssp SEECC---
T ss_pred ecCCCCCC
Confidence 98776543
No 115
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=6.2e-18 Score=122.41 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 161 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~ 161 (221)
..++|||+|||+++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++|| .++ .|.|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4589999999999999999999999999999999999999999999999999999999999 454 8999999999998
Q ss_pred CCCC
Q 027630 162 PLDD 165 (221)
Q Consensus 162 ~~~~ 165 (221)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 116
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-18 Score=115.40 Aligned_cols=75 Identities=37% Similarity=0.666 Sum_probs=70.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC-ccCCeEEEEEec
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSA 160 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-~i~g~~l~V~~a 160 (221)
++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|++|++.++ .+.|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999998554 889999999987
No 117
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-18 Score=118.15 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC----ccCCeEEE
Q 027630 82 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH----EICGQQVA 156 (221)
Q Consensus 82 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~----~i~g~~l~ 156 (221)
..+.++|||+|||+ ++++++|+++|++||.|.+|.|+++ ++||||+|.+.++|++||+.++ .|.|+.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999875 4799999999999999997543 58999999
Q ss_pred EEecCCCCCC
Q 027630 157 IDSATPLDDA 166 (221)
Q Consensus 157 V~~a~~~~~~ 166 (221)
|.+|+++..-
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999976543
No 118
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-17 Score=117.94 Aligned_cols=81 Identities=16% Similarity=0.335 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc--------C
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI--------C 151 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i--------~ 151 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||..++ .| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999997 89999999999999999999997554 56 5
Q ss_pred CeEEEEEecCCC
Q 027630 152 GQQVAIDSATPL 163 (221)
Q Consensus 152 g~~l~V~~a~~~ 163 (221)
++.|.|.++.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999865
No 119
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=117.33 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
...++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.++ .|.++.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 457899999999999999999999999999999999999999999999999999999999998554 788888766554
No 120
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=2.2e-17 Score=121.72 Aligned_cols=80 Identities=30% Similarity=0.500 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||..+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.++ .|.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45568899999999999999999999999999999999999999999999999999999999998665 8899999998
Q ss_pred ec
Q 027630 159 SA 160 (221)
Q Consensus 159 ~a 160 (221)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 76
No 121
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=122.37 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
..+.++|||+|||+++++++|+++|++||.|..|.+..+..+++++|||||+|.+.++|++||..++ .|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4467899999999999999999999999998433222222378899999999999999999998654 88999999999
Q ss_pred cCCCCCCCC
Q 027630 160 ATPLDDAGP 168 (221)
Q Consensus 160 a~~~~~~~~ 168 (221)
+.++..+.+
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 998876543
No 122
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.3e-18 Score=120.16 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+.+ ..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 345689999999999999999999999999999999998899999999999999999999999754 489999999998
Q ss_pred cCC
Q 027630 160 ATP 162 (221)
Q Consensus 160 a~~ 162 (221)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 123
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=1e-18 Score=129.08 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEe
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 159 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~ 159 (221)
.....++|||+|||+++++++|+++|++|| |+.|.|+.++. ++++|||||+|.+.++|++||+ +...|.++.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 67999999976 9999999999999999999994 33489999999999
Q ss_pred cCCCCC
Q 027630 160 ATPLDD 165 (221)
Q Consensus 160 a~~~~~ 165 (221)
+.+++.
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 886643
No 124
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=113.69 Aligned_cols=80 Identities=23% Similarity=0.389 Sum_probs=70.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
......++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|++|+..++ .|.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3456678999999999999999999999999999999974 399999999999999997544 899999999
Q ss_pred EecCCCCCCC
Q 027630 158 DSATPLDDAG 167 (221)
Q Consensus 158 ~~a~~~~~~~ 167 (221)
.++.++....
T Consensus 77 ~~a~~~~~~~ 86 (92)
T 2dgt_A 77 QLSTSRLRTA 86 (92)
T ss_dssp EESSCCCSCC
T ss_pred EEccCCCCCC
Confidence 9999876544
No 125
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=2e-18 Score=113.92 Aligned_cols=74 Identities=35% Similarity=0.646 Sum_probs=69.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeEEEEEec
Q 027630 87 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDSA 160 (221)
Q Consensus 87 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~l~V~~a 160 (221)
+|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++. .+.|.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999974 45899999999875
No 126
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=8e-18 Score=115.03 Aligned_cols=79 Identities=39% Similarity=0.754 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCCccCCeEEEEEecC
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 161 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~l~V~~a~ 161 (221)
....++|||+|||+++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|+++......+.++.|.|.+|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcC
Confidence 567799999999999999999999999999999999885 789999999999999965444346789999999999
Q ss_pred CCCC
Q 027630 162 PLDD 165 (221)
Q Consensus 162 ~~~~ 165 (221)
|+..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 8764
No 127
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-17 Score=113.69 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccC--CeEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC--GQQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~--g~~l~V 157 (221)
..+.++|||+|||+++++++|+++|++||.|.+|.++.+ ++||||+|.+.++|++|++.++ .|. ++.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456689999999999999999999999999999999764 6899999999999999998544 788 999999
Q ss_pred EecCCCCC
Q 027630 158 DSATPLDD 165 (221)
Q Consensus 158 ~~a~~~~~ 165 (221)
.+++++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99998754
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=118.23 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--C--ccCCeEEE
Q 027630 82 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--H--EICGQQVA 156 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~--~i~g~~l~ 156 (221)
..+.++|||+|||++ +++++|+++|++||.|.+|.|++ .+|||||+|.+.++|++||+.+ + .|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999975 4789999999999999999744 2 58999999
Q ss_pred EEecCCCCCCC
Q 027630 157 IDSATPLDDAG 167 (221)
Q Consensus 157 V~~a~~~~~~~ 167 (221)
|.+|+++....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998776543
No 129
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.4e-18 Score=114.75 Aligned_cols=80 Identities=35% Similarity=0.683 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCCccCCeEEEEEecCC
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATP 162 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~l~V~~a~~ 162 (221)
...++|||+|||+++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++++.....+.++.|.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 45689999999999999999999999999999999875 7899999999999998876554577999999999998
Q ss_pred CCCCC
Q 027630 163 LDDAG 167 (221)
Q Consensus 163 ~~~~~ 167 (221)
+....
T Consensus 78 ~~~~~ 82 (88)
T 1wf0_A 78 KHNSN 82 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86654
No 130
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.6e-18 Score=118.50 Aligned_cols=80 Identities=29% Similarity=0.583 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecCCC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSATPL 163 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~~~ 163 (221)
++|||+|||+++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.+ |++|+..++ .|.|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 999998654 889999999999876
Q ss_pred CCC
Q 027630 164 DDA 166 (221)
Q Consensus 164 ~~~ 166 (221)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 131
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=116.16 Aligned_cols=82 Identities=22% Similarity=0.411 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCe
Q 027630 82 QRIGKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ 153 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~ 153 (221)
....++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+++++|||||+|.+.++|++||..++ .|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3456899999999999 789999999999999999998 4788999999999999999999998665 88998
Q ss_pred -EEEEEecCCCCC
Q 027630 154 -QVAIDSATPLDD 165 (221)
Q Consensus 154 -~l~V~~a~~~~~ 165 (221)
.|.|.++...+.
T Consensus 90 ~~l~V~~a~~~~k 102 (105)
T 2nlw_A 90 HTFRVNLFTDFDK 102 (105)
T ss_dssp CEEEEECSCCCCC
T ss_pred ceEEEEEcchHhh
Confidence 999999986643
No 132
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=118.80 Aligned_cols=83 Identities=33% Similarity=0.608 Sum_probs=73.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEE
Q 027630 79 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVA 156 (221)
Q Consensus 79 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~ 156 (221)
.......++|||+|||.++++++|+++|++||.|..|.++.++. .++|||||+|.+.++|++|+..+ ..|.|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33456779999999999999999999999999999999998753 48999999999999999999754 489999999
Q ss_pred EEecCCC
Q 027630 157 IDSATPL 163 (221)
Q Consensus 157 V~~a~~~ 163 (221)
|.++.++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999876
No 133
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=3.2e-18 Score=119.75 Aligned_cols=84 Identities=20% Similarity=0.499 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCCccCCeEEEEEecC
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSAT 161 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~l~V~~a~ 161 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||.+.+.|+|+.|.|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECC
Confidence 3456899999999999999999999999999999999998 999999999999999999999995568999999999998
Q ss_pred CCCCC
Q 027630 162 PLDDA 166 (221)
Q Consensus 162 ~~~~~ 166 (221)
++...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 77543
No 134
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=115.05 Aligned_cols=76 Identities=30% Similarity=0.573 Sum_probs=69.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecCCC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPL 163 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~~~ 163 (221)
++|||+|||+++++++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|++.+ ..|.|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999887 7889999999999999999754 4899999999999987
Q ss_pred CCC
Q 027630 164 DDA 166 (221)
Q Consensus 164 ~~~ 166 (221)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 135
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=2e-18 Score=120.58 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|.. .++.++.+++++|||||+|.+.++|++||+ ++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999888 677777888999999999999999999997 54 88999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+.++..+
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9987654
No 136
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-18 Score=122.99 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 80 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
.+....++|||+|||+++++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|++||. ++ .|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345567899999999999999999999999999887667777899999999999999999999998 54 899999999
Q ss_pred EecCCCC
Q 027630 158 DSATPLD 164 (221)
Q Consensus 158 ~~a~~~~ 164 (221)
.++.+++
T Consensus 99 ~~a~~~~ 105 (124)
T 1wel_A 99 HPITKKG 105 (124)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998653
No 137
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-19 Score=128.72 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccC
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD--------VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EIC 151 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~ 151 (221)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++||..++ .|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 9999999999999999999999999999998554 889
Q ss_pred CeEEEEEecCCCCCC
Q 027630 152 GQQVAIDSATPLDDA 166 (221)
Q Consensus 152 g~~l~V~~a~~~~~~ 166 (221)
|+.|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999987654
No 138
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=119.44 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCC---CCcceEEEEEEcCHHHHHHHHhhCCccCCeEEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKR---TGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAID 158 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~t---g~~~g~afV~f~~~~~a~~al~~~~~i~g~~l~V~ 158 (221)
....++|||+|||+++++++|+++|++||.|. +.++.++.+ ++++|||||+|.+.++|++||+.++.++|+.|.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~ 83 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCV 83 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEec
Confidence 34578999999999999999999999999999 889888877 78999999999999999999998888999998887
Q ss_pred ecCCCC
Q 027630 159 SATPLD 164 (221)
Q Consensus 159 ~a~~~~ 164 (221)
.+.+..
T Consensus 84 ~~~~~~ 89 (114)
T 2dnl_A 84 SSPTIK 89 (114)
T ss_dssp CCSSSC
T ss_pred cCCCcC
Confidence 665443
No 139
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=116.25 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||..+ ..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999875 689999999999999999754 489999999999
Q ss_pred cCCCCCCC
Q 027630 160 ATPLDDAG 167 (221)
Q Consensus 160 a~~~~~~~ 167 (221)
++++....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 99876544
No 140
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-17 Score=111.88 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRF--GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 156 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~ 156 (221)
.....++|||+|||+.+++++|+++|++| |.|..|.++ ++||||+|.+.++|++||..++ .|.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 999999874 5699999999999999998554 89999999
Q ss_pred EEecCCCCCC
Q 027630 157 IDSATPLDDA 166 (221)
Q Consensus 157 V~~a~~~~~~ 166 (221)
|.+++++...
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpd_A 83 VTLAKPVDKD 92 (99)
T ss_dssp EECCCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999987653
No 141
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=7.4e-18 Score=121.21 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V 157 (221)
....++|||+|||+++++++|+++|++||. |..|.|+.++. ++++|||||+|.+.++|++||+ +...|.++.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 456789999999999999999999999998 89999999976 9999999999999999999998 333899999999
Q ss_pred EecCCCC
Q 027630 158 DSATPLD 164 (221)
Q Consensus 158 ~~a~~~~ 164 (221)
.++.+++
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997654
No 142
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=118.79 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 155 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l 155 (221)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|+.||..++ .|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6999999999998754 57789999999999999999998665 8899999
Q ss_pred EEEecCCCCC
Q 027630 156 AIDSATPLDD 165 (221)
Q Consensus 156 ~V~~a~~~~~ 165 (221)
.|.+|.++..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987653
No 143
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=113.00 Aligned_cols=80 Identities=26% Similarity=0.574 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++.++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999999864 6899999999999999997544 8999999999
Q ss_pred ecCCCCCC
Q 027630 159 SATPLDDA 166 (221)
Q Consensus 159 ~a~~~~~~ 166 (221)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99986543
No 144
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6e-17 Score=110.65 Aligned_cols=77 Identities=27% Similarity=0.455 Sum_probs=69.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|++||..+ ..|.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999974 39999999999999999754 489999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+.++..+
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9987543
No 145
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.6e-17 Score=111.07 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||. ++ .|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 56666665 99999999999999998 55 88999999999
Q ss_pred cCCCCCCC
Q 027630 160 ATPLDDAG 167 (221)
Q Consensus 160 a~~~~~~~ 167 (221)
+.++....
T Consensus 79 a~~~~~~~ 86 (94)
T 2e5g_A 79 REQKEFQS 86 (94)
T ss_dssp SCCSCCCC
T ss_pred CCcCCCCC
Confidence 88766543
No 146
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=2.3e-17 Score=117.19 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
....++|||+|||+++++++|+++|++|| .|..+.|+.+ .++|||||+|.+.++|++||+.++ +|.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 8999998643 378999999999999999998665 8999999999
Q ss_pred ecCCC
Q 027630 159 SATPL 163 (221)
Q Consensus 159 ~a~~~ 163 (221)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 99754
No 147
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=117.77 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEecCC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATP 162 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~a~~ 162 (221)
...+|||+|||+++++++|+++|++| .|.+|.|+.++. ++++|||||+|.+.++|++||. +.+.|.++.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 899999999965 9999999999999999999995 33489999999998875
Q ss_pred C
Q 027630 163 L 163 (221)
Q Consensus 163 ~ 163 (221)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 148
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=9.8e-18 Score=121.68 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeE--EEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC-CccCCeEEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRIL--DVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAID 158 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~-~~i~g~~l~V~ 158 (221)
....++|||+|||+++++++|+++|++| .|. .|.|+.++. ++++|||||+|.+.++|++||+.. ..|.|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 4567899999999999999999999999 677 899999977 999999999999999999999743 48999999999
Q ss_pred ecCCCC
Q 027630 159 SATPLD 164 (221)
Q Consensus 159 ~a~~~~ 164 (221)
.+.+++
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 887543
No 149
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=7.8e-18 Score=118.96 Aligned_cols=83 Identities=16% Similarity=0.087 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGR---ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVA 156 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~ 156 (221)
.....++|||+|||+++++++|+++|+.||. |..|.|+.++. ++++|||||+|.+.++|++||. +...|.++.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 3557789999999999999999999999998 89999999977 9999999999999999999997 33488999999
Q ss_pred EEecCCCC
Q 027630 157 IDSATPLD 164 (221)
Q Consensus 157 V~~a~~~~ 164 (221)
|.++.+++
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99998654
No 150
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=4.7e-17 Score=109.63 Aligned_cols=72 Identities=10% Similarity=0.189 Sum_probs=66.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 161 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~ 161 (221)
...-|||+||++.+||++|+++|.+||+|.++.+.. ++|||||+|.+.++|++|++.++ .+.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999876 68999999999999999998665 8999999999984
No 151
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=8.8e-17 Score=113.98 Aligned_cols=77 Identities=26% Similarity=0.523 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEE
Q 027630 82 QRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 158 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~ 158 (221)
....++|||+|||++ +++++|+++|++||.|..|.| +++||||+|.+.++|++||+.+ ..|.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 445689999999999 999999999999999999998 5789999999999999999754 48999999999
Q ss_pred ecCCCCCC
Q 027630 159 SATPLDDA 166 (221)
Q Consensus 159 ~a~~~~~~ 166 (221)
++.+....
T Consensus 96 ~a~~~~~~ 103 (110)
T 1wf1_A 96 MAGEPKPD 103 (110)
T ss_dssp ESCCCCSC
T ss_pred ECCCCCCC
Confidence 99865443
No 152
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=108.00 Aligned_cols=75 Identities=24% Similarity=0.428 Sum_probs=67.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC---CccCCeEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS---HEICGQQVAI 157 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~---~~i~g~~l~V 157 (221)
.....++|||+|||+++++++|+++|++||.|..|.++. .+|||||+|.+.++|++|+..+ ..+.|+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 356678999999999999999999999999999999987 4789999999999999999855 3889999999
Q ss_pred EecC
Q 027630 158 DSAT 161 (221)
Q Consensus 158 ~~a~ 161 (221)
.+|+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 153
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=111.68 Aligned_cols=79 Identities=19% Similarity=0.391 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++||..+ ..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999996 666643 57899999999999999999754 489999999999
Q ss_pred cCCCCC
Q 027630 160 ATPLDD 165 (221)
Q Consensus 160 a~~~~~ 165 (221)
+.++..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 998754
No 154
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=110.28 Aligned_cols=71 Identities=21% Similarity=0.425 Sum_probs=63.9
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCe-EE
Q 027630 85 GKKIFVGRLPQEA------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQ-QV 155 (221)
Q Consensus 85 ~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~-~l 155 (221)
.++|||+|||+.+ ++++|+++|++||.|.+|.++ +.+++++|||||+|.+.++|++|+..++ .|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 4788999999999999999999998655 78888 77
Q ss_pred EE
Q 027630 156 AI 157 (221)
Q Consensus 156 ~V 157 (221)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 66
No 155
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=112.41 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|+..++ .|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999987666 3567899999999999999999998665 8999999999
Q ss_pred ecCCCCC
Q 027630 159 SATPLDD 165 (221)
Q Consensus 159 ~a~~~~~ 165 (221)
++.++..
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9987754
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=4.7e-17 Score=116.42 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=63.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeE-----
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ----- 154 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~----- 154 (221)
....++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.++ +|.|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 356789999999999999999999999999999999875 799999999999999998654 889988
Q ss_pred EEEEecCCCC
Q 027630 155 VAIDSATPLD 164 (221)
Q Consensus 155 l~V~~a~~~~ 164 (221)
|+|..+.++.
T Consensus 86 i~v~~~~~~~ 95 (115)
T 3beg_B 86 IRVKVDGPRS 95 (115)
T ss_dssp CEEEECC---
T ss_pred EEeccCCCCC
Confidence 6777766543
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=120.54 Aligned_cols=81 Identities=21% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe----EEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeEEEE
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRI----LDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAI 157 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i----~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~l~V 157 (221)
....+|||+|||+++++++|+++|++||.| ..|.|+.+ .+++++|||||+|.+.++|++||+. .+.|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 456899999999999999999999999975 68999998 5899999999999999999999974 34889999999
Q ss_pred EecCCCC
Q 027630 158 DSATPLD 164 (221)
Q Consensus 158 ~~a~~~~ 164 (221)
..+.+++
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9887543
No 158
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=6.9e-17 Score=114.32 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=69.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~ 158 (221)
.....++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|++|+..+ ..|.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45677999999999999999999999999999999997 689999999999999999754 48899999999
Q ss_pred ecCCCCCC
Q 027630 159 SATPLDDA 166 (221)
Q Consensus 159 ~a~~~~~~ 166 (221)
+++++..+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99987554
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=9.7e-17 Score=126.71 Aligned_cols=82 Identities=26% Similarity=0.296 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
.+.++|||+|||+++++++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++||..++ .+.++.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999997544 789999999998
Q ss_pred CCCC
Q 027630 161 TPLD 164 (221)
Q Consensus 161 ~~~~ 164 (221)
.+..
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7553
No 160
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.6e-16 Score=107.32 Aligned_cols=79 Identities=25% Similarity=0.346 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
.....++|||+|| ++++++|+++|++||.|..|.|. +++|||||+|.+.++|++||..++ .|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999999985 367899999999999999998655 8899999999
Q ss_pred ecCCCCCCC
Q 027630 159 SATPLDDAG 167 (221)
Q Consensus 159 ~a~~~~~~~ 167 (221)
++.++....
T Consensus 83 ~a~~~~~~~ 91 (97)
T 1x5p_A 83 IARKQPMLD 91 (97)
T ss_dssp CCSSCCCCC
T ss_pred ECCCCCCCC
Confidence 999876544
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=110.62 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEE-EeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDV-YVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 158 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~ 158 (221)
....++|||+|||+++++++|+++|++||.|..| .|+.++.++. |||+|.+.++|++||..+ ..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 5888766543 999999999999999754 48999999999
Q ss_pred ecCCCCC
Q 027630 159 SATPLDD 165 (221)
Q Consensus 159 ~a~~~~~ 165 (221)
++.+++.
T Consensus 88 ~a~~~~~ 94 (96)
T 2e44_A 88 YIPDEMA 94 (96)
T ss_dssp ECCCCCS
T ss_pred EcCcccc
Confidence 9998853
No 162
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.2e-17 Score=112.89 Aligned_cols=78 Identities=22% Similarity=0.459 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEE
Q 027630 82 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAID 158 (221)
Q Consensus 82 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~ 158 (221)
..+.++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|++||..++ .+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999984 6799999999999999998544 8899999999
Q ss_pred ecCCCCCCC
Q 027630 159 SATPLDDAG 167 (221)
Q Consensus 159 ~a~~~~~~~ 167 (221)
++.++....
T Consensus 79 ~a~~~~~~~ 87 (96)
T 2kvi_A 79 VSSSNARPQ 87 (96)
T ss_dssp EEECCCC--
T ss_pred EcCcCCCCC
Confidence 998765543
No 163
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=111.17 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh--C-CccCCeEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGR-ILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR--S-HEICGQQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~--~-~~i~g~~l~V 157 (221)
....++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++||+. . ..|.|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666553 578999999999999999974 4 5789999999
Q ss_pred EecCCCCCCC
Q 027630 158 DSATPLDDAG 167 (221)
Q Consensus 158 ~~a~~~~~~~ 167 (221)
.++.++..+.
T Consensus 78 ~~a~~~~~~~ 87 (93)
T 2cqh_A 78 DYSVSKKLRS 87 (93)
T ss_dssp EECCCCCCCC
T ss_pred EEccCccccC
Confidence 9999876543
No 164
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.5e-17 Score=113.18 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|||.++++++|+++|++||.|.+|.++. ++|||||+|.+.++|++|+..+ ..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999973 6789999999999999999754 488999999999
Q ss_pred cCCC
Q 027630 160 ATPL 163 (221)
Q Consensus 160 a~~~ 163 (221)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9874
No 165
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=5.8e-17 Score=112.15 Aligned_cols=81 Identities=30% Similarity=0.484 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQV 155 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l 155 (221)
..+.++|||+|||+++++++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|++|+..+ ..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999999874 4668899999999999999999754 48899999
Q ss_pred EEEecCCCCC
Q 027630 156 AIDSATPLDD 165 (221)
Q Consensus 156 ~V~~a~~~~~ 165 (221)
.|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999998654
No 166
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.4e-16 Score=109.34 Aligned_cols=76 Identities=22% Similarity=0.523 Sum_probs=67.7
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEE
Q 027630 81 SQRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAI 157 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V 157 (221)
.....++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..++ .+.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 355679999999998 99999999999999999999983 6899999999999999997554 789999999
Q ss_pred EecCCCC
Q 027630 158 DSATPLD 164 (221)
Q Consensus 158 ~~a~~~~ 164 (221)
.+++++.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9998653
No 167
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.4e-16 Score=122.52 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~ 159 (221)
....++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.++ .|.|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999997 89999999999999999999998654 89999999999
Q ss_pred cCCCC
Q 027630 160 ATPLD 164 (221)
Q Consensus 160 a~~~~ 164 (221)
|.+..
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 98643
No 168
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.5e-16 Score=113.59 Aligned_cols=81 Identities=17% Similarity=0.369 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|||+.+++++|+++|++||.|..|.|+.+. .++|||||+|.+.++|++|+..+ ..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999998764 45899999999999999999754 489999999999
Q ss_pred cCCCCC
Q 027630 160 ATPLDD 165 (221)
Q Consensus 160 a~~~~~ 165 (221)
+.++..
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 986543
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.8e-16 Score=122.83 Aligned_cols=86 Identities=34% Similarity=0.554 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeEEEEEe
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVAIDS 159 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~l~V~~ 159 (221)
.....++|||+|||+++++++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++||.. .+.|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 345678999999999999999999999999999999999999999999999999999999999974 3489999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+.++...
T Consensus 89 ~~~~~~~ 95 (196)
T 1l3k_A 89 AVSREDS 95 (196)
T ss_dssp CCC----
T ss_pred ccCcccc
Confidence 9876543
No 170
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=2.4e-16 Score=118.79 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCC--eEEEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICG--QQVAI 157 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g--~~l~V 157 (221)
.....+|||+||++.+++++|+++|++||.|.+|.|..+. .++||||+|.+.++|++|++.++ .|.+ +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3455679999999999999999999999999999987542 57899999999999999998765 7855 99999
Q ss_pred EecCCCCC
Q 027630 158 DSATPLDD 165 (221)
Q Consensus 158 ~~a~~~~~ 165 (221)
.+++++.-
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99998753
No 171
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=9e-17 Score=115.39 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=67.6
Q ss_pred CCeEEEcCC----CCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcC----HHH----HHHHHh----hCC
Q 027630 85 GKKIFVGRL----PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE----EVV----ADRVSR----RSH 148 (221)
Q Consensus 85 ~~~l~V~nL----p~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~----~~~----a~~al~----~~~ 148 (221)
..+|||+|| |+.+++++|+.+|+.||+|.+|.++.|+.|+.++|||||+|.+ +++ |.+|+. +..
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 479999999 9999999999999999999999999999999999999999996 322 778876 334
Q ss_pred ccCCeEEEEEecC
Q 027630 149 EICGQQVAIDSAT 161 (221)
Q Consensus 149 ~i~g~~l~V~~a~ 161 (221)
.|+|+.|+|.+..
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 8999999999764
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=9.9e-17 Score=121.22 Aligned_cols=81 Identities=33% Similarity=0.653 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCCccCCeEEEEEecCCC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAIDSATPL 163 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~l~V~~a~~~ 163 (221)
+.++|||+|||+++++++|+++|++||.|.+|.+++++.++.++|||||+|.+.++|++|+..++.+.|+.|.|.++.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 35799999999999999999999999999999999999999999999999999999999999888999999999988765
Q ss_pred C
Q 027630 164 D 164 (221)
Q Consensus 164 ~ 164 (221)
.
T Consensus 82 ~ 82 (167)
T 2cjk_A 82 D 82 (167)
T ss_dssp H
T ss_pred h
Confidence 3
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=4.7e-16 Score=117.14 Aligned_cols=81 Identities=22% Similarity=0.400 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecCC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATP 162 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~~ 162 (221)
.++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|++.+ ..+.++.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 579999999999999999999999999999999999989999999999999999999999744 488999999999987
Q ss_pred CCC
Q 027630 163 LDD 165 (221)
Q Consensus 163 ~~~ 165 (221)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 174
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=3.6e-16 Score=118.14 Aligned_cols=83 Identities=23% Similarity=0.372 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 161 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~ 161 (221)
+.++|||+|||+++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|++|+..+ ..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3589999999999999999999999999999999999999999999999999999999999744 48899999999998
Q ss_pred CCCCC
Q 027630 162 PLDDA 166 (221)
Q Consensus 162 ~~~~~ 166 (221)
+....
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 175
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=112.28 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
...++|||+|||+.+++++|+++|++||.|..|.|+. .++||||+|.+.++|++||..++ .|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3467999999999999999999999999999999874 57899999999999999997554 899999999999
Q ss_pred CCC
Q 027630 161 TPL 163 (221)
Q Consensus 161 ~~~ 163 (221)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 754
No 176
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.9e-16 Score=110.46 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=68.6
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc-----CCe
Q 027630 83 RIGKKIFV--GRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI-----CGQ 153 (221)
Q Consensus 83 ~~~~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i-----~g~ 153 (221)
.+.++||| +||++++++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.++ +| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45688999 77999999999999999999999998864 36899999999999999998665 55 588
Q ss_pred EEEEEecCCCCCCCC
Q 027630 154 QVAIDSATPLDDAGP 168 (221)
Q Consensus 154 ~l~V~~a~~~~~~~~ 168 (221)
.|.|.++.......+
T Consensus 97 ~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 97 TLYLNFVEKVQWSGP 111 (114)
T ss_dssp ECEEEEESCCCCSSC
T ss_pred EEEEEecccCcccCC
Confidence 999999986655443
No 177
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=7.9e-17 Score=119.51 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEE--eecC---CCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVY--VPKD---PKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ 154 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--~~~~---~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~ 154 (221)
..+.++|||+|||+.+++++|+++|++||.|..|. ++.+ ..+++++|||||+|.+.++|++||..++ .|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44568999999999999999999999999887641 1111 2468899999999999999999998554 899999
Q ss_pred EEEEecCCCCCC
Q 027630 155 VAIDSATPLDDA 166 (221)
Q Consensus 155 l~V~~a~~~~~~ 166 (221)
|.|.+|++...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876544
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=4.2e-15 Score=107.37 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=65.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceE-EEEEEcCHHHHHHHHhhCC--ccCC--eEEEEE
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGF-GFVTFAEEVVADRVSRRSH--EICG--QQVAID 158 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~-afV~f~~~~~a~~al~~~~--~i~g--~~l~V~ 158 (221)
....|||+||++.+++++|+++|++||.|.+|.|... .|| |||+|.+.++|+.|++.++ .|.+ +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3445789999999999999999999999999998652 276 9999999999999998655 7876 699999
Q ss_pred ecCCCCC
Q 027630 159 SATPLDD 165 (221)
Q Consensus 159 ~a~~~~~ 165 (221)
+|+++.-
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9998753
No 179
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=7.3e-16 Score=104.84 Aligned_cols=74 Identities=18% Similarity=0.300 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEec
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSA 160 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a 160 (221)
...++|||+|||+++++++|+++|++| .|.+|.+. +++|||||+|.+.++|++|++.++ .+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356899999999999999999999999 99999885 478999999999999999998655 899999999998
Q ss_pred CCC
Q 027630 161 TPL 163 (221)
Q Consensus 161 ~~~ 163 (221)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=103.34 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=62.8
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHhhccC-CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEE
Q 027630 84 IGKK-IFVGRLPQEATAED----LRRYFSRFG-RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 155 (221)
Q Consensus 84 ~~~~-l~V~nLp~~~te~~----l~~~F~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l 155 (221)
+..+ |||+|||+.+++++ |+++|++|| +|.+| |+ |+|||+|.+.++|++|++.++ +|.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999987 558999995 99998 23 899999999999999998655 8999999
Q ss_pred EEEecCCCCCC
Q 027630 156 AIDSATPLDDA 166 (221)
Q Consensus 156 ~V~~a~~~~~~ 166 (221)
+|.+|+.+.+-
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999977543
No 181
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.5e-15 Score=110.27 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceE-EEEEEcCHHHHHHHHhhCC--ccCC--eEEEE
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGF-GFVTFAEEVVADRVSRRSH--EICG--QQVAI 157 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~-afV~f~~~~~a~~al~~~~--~i~g--~~l~V 157 (221)
.....|||+||++.+|+++|+++|++||.|.+|.++.+ .+|| |||+|.+.++|++|++.++ .|.+ +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34567899999999999999999999999999988764 3678 9999999999999998655 7877 89999
Q ss_pred EecCCCCC
Q 027630 158 DSATPLDD 165 (221)
Q Consensus 158 ~~a~~~~~ 165 (221)
.+++++.-
T Consensus 101 ~~ak~~~l 108 (130)
T 3zzy_A 101 DFSKLTSL 108 (130)
T ss_dssp EECSCSSC
T ss_pred EecCCCce
Confidence 99998743
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=2.7e-15 Score=117.88 Aligned_cols=81 Identities=21% Similarity=0.418 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 161 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~ 161 (221)
..++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+.+ ..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4589999999999999999999999999999999999989999999999999999999999754 48899999998877
Q ss_pred CCC
Q 027630 162 PLD 164 (221)
Q Consensus 162 ~~~ 164 (221)
+..
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 553
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=4.5e-15 Score=115.59 Aligned_cols=78 Identities=15% Similarity=0.344 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC-CccCCeEEEEEecCCC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATPL 163 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~-~~i~g~~l~V~~a~~~ 163 (221)
.++|||+|||+++++++|+++|++||.|..|.|+++. ++.++|||||+|.+.++|++||... ..+.|+.|.|.++..-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 4799999999999999999999999999999999985 5889999999999999999999754 4899999999988754
No 184
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4.6e-15 Score=111.55 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=71.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecCCC
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSATPL 163 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~~~ 163 (221)
++|||+|||+++++++|+++|++||.|.+|.++.++. ++++|||||+|.+.++|++|+..+ ..+.++.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999864 679999999999999999999644 4889999999999876
Q ss_pred CC
Q 027630 164 DD 165 (221)
Q Consensus 164 ~~ 165 (221)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=4.7e-15 Score=116.53 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=68.7
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEec
Q 027630 84 IGKKIFVGRLP-QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSA 160 (221)
Q Consensus 84 ~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a 160 (221)
..++|||+||| +.+++++|+++|++||.|.+|+|+.+ .+|||||+|.+.++|++||+.+ ..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999876 4799999999999999999755 4899999999999
Q ss_pred CCCC
Q 027630 161 TPLD 164 (221)
Q Consensus 161 ~~~~ 164 (221)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=4.5e-15 Score=107.02 Aligned_cols=77 Identities=26% Similarity=0.343 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~ 159 (221)
....++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|++||..+ ..|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999996 69999999999999999999986 36889999999999999999754 489999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+.++...
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9987544
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=4.7e-15 Score=118.62 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc
Q 027630 82 QRIGKKIFVGRLPQEA---------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 150 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~---------te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i 150 (221)
....++|||+||+..+ ++++|+++|++||.|++|.|+. .+|||||+|.+.++|+.|++.++ .|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 7999999999999999999986 57899999999999999997654 66
Q ss_pred ------------CCeEEEEEecCCCCC
Q 027630 151 ------------CGQQVAIDSATPLDD 165 (221)
Q Consensus 151 ------------~g~~l~V~~a~~~~~ 165 (221)
.|+.|.|++|.+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 799999999986544
No 188
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=5.8e-15 Score=99.85 Aligned_cols=70 Identities=23% Similarity=0.448 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--c
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--E 149 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~ 149 (221)
...++|||+|||+++++++|+++|++| | .|.++.++.+ +|||||+|.+.++|++|+ .++ .
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8999998764 789999999999999999 555 8
Q ss_pred cCCeEEEEEe
Q 027630 150 ICGQQVAIDS 159 (221)
Q Consensus 150 i~g~~l~V~~ 159 (221)
|.|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 8999999874
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=9.9e-15 Score=110.76 Aligned_cols=82 Identities=24% Similarity=0.470 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCC--CcceEEEEEEcCHHHHHHHHhhCC--ccC---CeEEE
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRT--GHRGFGFVTFAEEVVADRVSRRSH--EIC---GQQVA 156 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg--~~~g~afV~f~~~~~a~~al~~~~--~i~---g~~l~ 156 (221)
..++|||+|||+++++++|+++|++||.|.+|.|++++.++ +++|||||+|.+.++|++|++.++ .+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35799999999999999999999999999999999998887 899999999999999999997554 333 67788
Q ss_pred EEecCCCCC
Q 027630 157 IDSATPLDD 165 (221)
Q Consensus 157 V~~a~~~~~ 165 (221)
+.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776544
No 190
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.8e-14 Score=96.74 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=65.8
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCCccCCeEEEE
Q 027630 85 GKKIFVGRLP-------QEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSHEICGQQVAI 157 (221)
Q Consensus 85 ~~~l~V~nLp-------~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~~i~g~~l~V 157 (221)
..+|-|.-.. ..+++++|+++|++||.|.+|.|+. +++|||||+|.+.++|+.||..++.+.++.|.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V 84 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKI 84 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEE
Confidence 4566555333 4589999999999999999999983 488999999999999999999888889999999
Q ss_pred EecCCCCCCC
Q 027630 158 DSATPLDDAG 167 (221)
Q Consensus 158 ~~a~~~~~~~ 167 (221)
.++.++....
T Consensus 85 ~~a~~~~~~~ 94 (100)
T 2d9o_A 85 SWLEGQPQDA 94 (100)
T ss_dssp ECSSCCCCCC
T ss_pred EEccCCCCCC
Confidence 9998776543
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=2.7e-14 Score=116.93 Aligned_cols=80 Identities=28% Similarity=0.463 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEE
Q 027630 82 QRIGKKIFVGRLPQEATAEDLR----RYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 155 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l 155 (221)
....++|||+|||+++++++|+ ++|++||.|.+|.+++ +++++|||||+|.+.++|++||+.++ .|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999976 8999999999999876 67799999999999999999997654 8899999
Q ss_pred EEEecCCCC
Q 027630 156 AIDSATPLD 164 (221)
Q Consensus 156 ~V~~a~~~~ 164 (221)
.|.++.++.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=3.2e-14 Score=99.94 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEeecCCCC-CCcceEEEEEEcCHHHHHHHHhhCC--ccCCeE
Q 027630 83 RIGKKIFVGRLPQ-----EATAEDLRRYFSRFGRILDVYVPKDPKR-TGHRGFGFVTFAEEVVADRVSRRSH--EICGQQ 154 (221)
Q Consensus 83 ~~~~~l~V~nLp~-----~~te~~l~~~F~~~G~i~~v~~~~~~~t-g~~~g~afV~f~~~~~a~~al~~~~--~i~g~~ 154 (221)
.++++|+|.||.. +-++++|+++|++||.|.+|.|+.++.+ +.++||+||+|.+.++|.+|+..++ .+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2368999999999999999999998754 6789999999999999999998655 899999
Q ss_pred EEEEecCC
Q 027630 155 VAIDSATP 162 (221)
Q Consensus 155 l~V~~a~~ 162 (221)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999975
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=5.1e-14 Score=112.21 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEE
Q 027630 82 QRIGKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAID 158 (221)
Q Consensus 82 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~ 158 (221)
....++|||+|||+ .+++++|+++|++||.|.+|.|+.++ +|||||+|.+.++|++|++.+ ..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999999874 789999999999999999744 48899999999
Q ss_pred ecCCCCC
Q 027630 159 SATPLDD 165 (221)
Q Consensus 159 ~a~~~~~ 165 (221)
++.+...
T Consensus 106 ~a~~~~~ 112 (229)
T 2adc_A 106 LSKHQNV 112 (229)
T ss_dssp CCSCCCC
T ss_pred EecCccc
Confidence 9986643
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.4e-13 Score=96.55 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--
Q 027630 82 QRIGKKIFVGRLPQEAT-----------AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-- 148 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~t-----------e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~-- 148 (221)
..+.++|+|.||..... +++|+++|++||.|.+|.| .++. ++|||||+|.+.++|++|+..++
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCC
Confidence 45678999999944332 5799999999999999966 4433 78999999999999999998665
Q ss_pred ccCCeEEEEEecCCCCCCC
Q 027630 149 EICGQQVAIDSATPLDDAG 167 (221)
Q Consensus 149 ~i~g~~l~V~~a~~~~~~~ 167 (221)
.|.|+.|.|.++.++....
T Consensus 88 ~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp EETTEECEEEECCSCCCSS
T ss_pred EECCcEEEEEEeCCCCCcc
Confidence 8899999999999876543
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.49 E-value=1.5e-14 Score=110.13 Aligned_cols=85 Identities=16% Similarity=0.304 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCeEEEEEe
Q 027630 81 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDS 159 (221)
Q Consensus 81 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~~l~V~~ 159 (221)
.....++|||+|||+++++++|+++|.+||.+.. .++.+..++.++|||||+|.+.++|++||+ +...|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 3566789999999999999999999999997766 344555778899999999999999999995 23388999999999
Q ss_pred cCCCCCC
Q 027630 160 ATPLDDA 166 (221)
Q Consensus 160 a~~~~~~ 166 (221)
+.++...
T Consensus 88 ~~~~~~~ 94 (175)
T 1fje_B 88 PKGRDSK 94 (175)
T ss_dssp CCCSSCS
T ss_pred CCCcccc
Confidence 9876543
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=9.5e-14 Score=107.83 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=68.9
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecC
Q 027630 85 GKKIFVGRLPQ-EATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 161 (221)
Q Consensus 85 ~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~ 161 (221)
.++|||+|||+ .+++++|+++|++||.|.+|.++.++ +|||||+|.+.++|++|+..+ ..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999999874 789999999999999999744 48899999999998
Q ss_pred CCCC
Q 027630 162 PLDD 165 (221)
Q Consensus 162 ~~~~ 165 (221)
+...
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7643
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=3.2e-13 Score=109.67 Aligned_cols=78 Identities=29% Similarity=0.575 Sum_probs=68.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEE
Q 027630 79 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVA 156 (221)
Q Consensus 79 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~ 156 (221)
.......++|||+|||+++|+++|+++|++||.|..|.+.+ .+|||||+|.+.++|.+|+..+ ..|.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 33345668999999999999999999999999999999965 4689999999999999999744 488999999
Q ss_pred EEecCC
Q 027630 157 IDSATP 162 (221)
Q Consensus 157 V~~a~~ 162 (221)
|.++.+
T Consensus 90 v~~a~~ 95 (261)
T 3sde_A 90 IRFATH 95 (261)
T ss_dssp EEECCC
T ss_pred eeeccc
Confidence 999875
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=2e-12 Score=99.94 Aligned_cols=75 Identities=20% Similarity=0.409 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 150 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i 150 (221)
..++|||+|||+++++++|+++|++| | .|.++.+. .++|||||+|.+.++|++|| .++ .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 56666664 35789999999999999999 444 88
Q ss_pred CCeEEEEEecCCCCC
Q 027630 151 CGQQVAIDSATPLDD 165 (221)
Q Consensus 151 ~g~~l~V~~a~~~~~ 165 (221)
.|+.|.|.++.+...
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred cCceEEEeCCCCCCC
Confidence 999999999887643
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=1.1e-12 Score=99.19 Aligned_cols=76 Identities=20% Similarity=0.397 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRF----G-------RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 151 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~ 151 (221)
+.++|||+|||+++++++|+++|++| | .|.++.+.. .+|||||+|.+.++|++|+. +...|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 45799999999999999999999999 6 777877754 47899999999999999993 234889
Q ss_pred CeEEEEEecCCCCC
Q 027630 152 GQQVAIDSATPLDD 165 (221)
Q Consensus 152 g~~l~V~~a~~~~~ 165 (221)
|+.|.|.++.+...
T Consensus 77 g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP 90 (172)
T ss_dssp TEECEEECCSSCCC
T ss_pred CceeeecCCcccCC
Confidence 99999998876543
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=1.1e-12 Score=92.04 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=67.5
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEeecCCCC--CCcceEEEEEEcCHHHHHHHHhhCC--
Q 027630 83 RIGKKIFVGRL--PQEAT--------AEDLRRYFSRFGRILDVYVPKDPKR--TGHRGFGFVTFAEEVVADRVSRRSH-- 148 (221)
Q Consensus 83 ~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~~~~~~~t--g~~~g~afV~f~~~~~a~~al~~~~-- 148 (221)
.+++.|.|.|+ |.++. +++|++.|++||.|.+|.|++++.+ +.++||+||+|.+.++|++|+..++
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678899998 44443 3689999999999999999998765 3678999999999999999997665
Q ss_pred ccCCeEEEEEecCC
Q 027630 149 EICGQQVAIDSATP 162 (221)
Q Consensus 149 ~i~g~~l~V~~a~~ 162 (221)
.+.|+.|.|.++.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 89999999999864
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=2.2e-13 Score=95.52 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=60.3
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEE
Q 027630 90 VGRLPQEATAEDLRRYF------------SRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQV 155 (221)
Q Consensus 90 V~nLp~~~te~~l~~~F------------~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l 155 (221)
+.+|++.+++++|++.| ++||.|.+|.|++++. ++++|||||+|.+.++|++|+..++ .+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888777666 9999999999998854 7889999999999999999997554 8999999
Q ss_pred EEEec
Q 027630 156 AIDSA 160 (221)
Q Consensus 156 ~V~~a 160 (221)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=3.8e-12 Score=91.12 Aligned_cols=79 Identities=10% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCCeEEEcCCC--CCC---CHHHHHHHhhccCCeEEEEeecCCC----CCCcceEEEEEEcCHHHHHHHHhhCC--ccCC
Q 027630 84 IGKKIFVGRLP--QEA---TAEDLRRYFSRFGRILDVYVPKDPK----RTGHRGFGFVTFAEEVVADRVSRRSH--EICG 152 (221)
Q Consensus 84 ~~~~l~V~nLp--~~~---te~~l~~~F~~~G~i~~v~~~~~~~----tg~~~g~afV~f~~~~~a~~al~~~~--~i~g 152 (221)
++++|+|.|+- .++ .+++|++.|++||.|.+|.|++++. ++..+||+||+|.+.++|.+|+..++ .+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999983 222 3689999999999999999998865 45678999999999999999998665 8999
Q ss_pred eEEEEEecCC
Q 027630 153 QQVAIDSATP 162 (221)
Q Consensus 153 ~~l~V~~a~~ 162 (221)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=9.4e-12 Score=104.49 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=62.1
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc---CCe-
Q 027630 82 QRIGKKIFVGR--LPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI---CGQ- 153 (221)
Q Consensus 82 ~~~~~~l~V~n--Lp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i---~g~- 153 (221)
..++.+|||+| |+..++|++|+++|++||.|.+|.++. .||||||+|.+.++|++||+.++ ++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 578899999999999999999988754 47899999999999999998765 33 345
Q ss_pred -EEEEEecC
Q 027630 154 -QVAIDSAT 161 (221)
Q Consensus 154 -~l~V~~a~ 161 (221)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777774
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2e-10 Score=82.08 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=65.8
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcC-HHHHHHHHhhCC----ccCCe
Q 027630 80 SSQRIGKKIFVGRLPQE-ATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSRRSH----EICGQ 153 (221)
Q Consensus 80 ~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~-~~~a~~al~~~~----~i~g~ 153 (221)
-.-..++.|||+||++. +++++|+++|++||.|..|.++++.. .|||.|.+ .++|..|+..++ .|.+.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34567899999999999 99999999999999999999998855 59999999 889999987653 78888
Q ss_pred EEEEEecC
Q 027630 154 QVAIDSAT 161 (221)
Q Consensus 154 ~l~V~~a~ 161 (221)
.+.+....
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88887654
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.14 E-value=2.2e-10 Score=81.35 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=62.1
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--cc
Q 027630 83 RIGKKIFVGRLPQEA----------TAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EI 150 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i 150 (221)
.+++.|.+.|+=... -+++|++.|++||.|.+|.|.++. .+||+||+|.+.++|++|+..++ .+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456788888882221 135789999999999999997763 58999999999999999997655 89
Q ss_pred CCeEEEEEecCC
Q 027630 151 CGQQVAIDSATP 162 (221)
Q Consensus 151 ~g~~l~V~~a~~ 162 (221)
.|+.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999863
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.9e-09 Score=72.53 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=59.7
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCCe
Q 027630 83 RIGKKIFVGRLPQ----EATA----EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQ 153 (221)
Q Consensus 83 ~~~~~l~V~nLp~----~~te----~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g~ 153 (221)
++.-+|+|.-++. ++.. .+|.+.|++||.|..++++.+ .+||+|.+.++|.+||. ++..++|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHhcCCeEeCCe
Confidence 4567888877662 2323 578999999999999999887 38999999999999997 33489999
Q ss_pred EEEEEecCCC
Q 027630 154 QVAIDSATPL 163 (221)
Q Consensus 154 ~l~V~~a~~~ 163 (221)
.|+|+.+.|.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999864
No 207
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.97 E-value=3.5e-10 Score=80.35 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=50.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC-----
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR----- 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~----- 77 (221)
-++++|.++|++++.|....|..++. .+++||||.|.+.++|+.|+..|++..+.+.+......
T Consensus 17 ~te~~L~~~F~~~G~v~~v~i~~d~~-----------~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 17 IDNKALYDTFSAFGNILSCKVVCDEN-----------GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEEETT-----------EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred CCHHHHHHHHhccCCEEEEEEeecCC-----------CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 36899999999999998887776632 46799999999999999999999988777765422211
Q ss_pred ----CCCCCCCCCeEEEcCCCCCCCHHH
Q 027630 78 ----GESSQRIGKKIFVGRLPQEATAED 101 (221)
Q Consensus 78 ----~~~~~~~~~~l~V~nLp~~~te~~ 101 (221)
.........+|||+|||+++|++.
T Consensus 86 ~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 86 REAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ----------------------------
T ss_pred cccccccccCCCCceEeCCCCCCccccc
Confidence 111223456899999999999864
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.9e-08 Score=67.97 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=59.8
Q ss_pred CCCCCeEEEcCCCCC------CCH---HHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccC
Q 027630 82 QRIGKKIFVGRLPQE------ATA---EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEIC 151 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~------~te---~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~ 151 (221)
-++.-+|+|.-++.. ..+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||. +...++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC
Confidence 356679999887643 232 4688999999999999999883 9999999999999997 344999
Q ss_pred CeEEEEEecCC
Q 027630 152 GQQVAIDSATP 162 (221)
Q Consensus 152 g~~l~V~~a~~ 162 (221)
|+.|+|++..|
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998654
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.68 E-value=5e-08 Score=76.94 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=56.6
Q ss_pred CCHHHHHHHhhccCCeEEEEeecC----CCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEEEEecC
Q 027630 97 ATAEDLRRYFSRFGRILDVYVPKD----PKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVAIDSAT 161 (221)
Q Consensus 97 ~te~~l~~~F~~~G~i~~v~~~~~----~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~V~~a~ 161 (221)
-.+++|.+.|++||.|.++.|+++ +.++..+|++||+|.+.++|.+|+..++ .+.||.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 356789999999999999999854 4456899999999999999999998655 8999999999875
No 210
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.38 E-value=3.2e-07 Score=63.07 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=56.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC-------
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY------- 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~------- 75 (221)
-++++|.++|++++.|....+..+ +++||||.|.+.++|+.|+..+++..+.+.+....
T Consensus 12 ~t~~~l~~~F~~~G~i~~v~i~~~--------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 12 AGKGELERAFSYYGPLRTVWIARN--------------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CSHHHHHHHHHHHCCCSEEEEESS--------------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeC--------------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 368999999999988876665544 35899999999999999999987766666553111
Q ss_pred ----CCCCCCCCCCCeEEEcCCC
Q 027630 76 ----GRGESSQRIGKKIFVGRLP 94 (221)
Q Consensus 76 ----~~~~~~~~~~~~l~V~nLp 94 (221)
...........+|||+||+
T Consensus 78 ~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSCCCSCCCCSCCCSCCCC
T ss_pred cccCCCCCccccCCCceecCCCC
Confidence 1111122336789999996
No 211
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.35 E-value=4.5e-07 Score=61.05 Aligned_cols=66 Identities=8% Similarity=-0.036 Sum_probs=55.3
Q ss_pred CChHHHHHHhcccc--cccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTH--ELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGR 77 (221)
Q Consensus 3 ~~~~~~~~~~~~~~--~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 77 (221)
.++++|.+.|++++ .|....|..++.+. +++|||||.|.+.++|++|+..+++..+.+.+......
T Consensus 13 ~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g---------~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 13 TTDEDLTEAVHSLGVNDILEIKFFENRANG---------QSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp CCHHHHHHHHHTTTCCCCCCEEEEECTTTC---------CEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred CCHHHHHHHHHHhCCCceEEEEEEecCCCC---------ccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 46899999999999 89888888887766 78899999999999999999999998887776544433
No 212
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.32 E-value=1.4e-07 Score=66.44 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=67.9
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQR 83 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (221)
++++|.++|+.++.|....|..+ + .+++||||.|.+..+|.+|+..+++..+.+.+............
T Consensus 21 t~~~l~~~F~~~G~v~~v~i~~~---~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 88 (115)
T 3lqv_A 21 TAEEMYDIFGKYGPIRQIRVGNT---P---------ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF 88 (115)
T ss_dssp CHHHHHHHHHTTSCEEEEEEECS---T---------TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT
T ss_pred CHHHHHHHHHhcCCeEEEEEeeC---C---------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh
Confidence 68899999999998876666532 1 45799999999999999999999998877766544332211111
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCC
Q 027630 84 IGKKIFVGRLPQEATAEDLRRYFSRFGR 111 (221)
Q Consensus 84 ~~~~l~V~nLp~~~te~~l~~~F~~~G~ 111 (221)
.+++...++++|+++|++||.
T Consensus 89 -------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 -------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp -------TTSCHHHHHHHHHHHHHHHCC
T ss_pred -------hhhhHhHhHHHHHHHHHHhCC
Confidence 467777889999999999984
No 213
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.29 E-value=3.7e-07 Score=62.84 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=52.5
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|+.|+..|++..+.+.+.
T Consensus 31 ~te~~L~~~F~~~G~I~~v~i~~d~~tg---------~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 31 MTQDELRSLFSSIGEVESAKLIRDKVAG---------HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECSSSC---------CEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEeEeeecCCCC---------cccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3689999999999999888888776666 788999999999999999999999877766543
No 214
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.27 E-value=7.1e-07 Score=62.63 Aligned_cols=59 Identities=7% Similarity=0.033 Sum_probs=52.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
-++++|.++|++++.|....|..++.+. +++|||||.|.+.++|++|+..||+..+.+.
T Consensus 18 ~te~~L~~~F~~~G~i~~v~i~~d~~tg---------~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 18 VRETFLKDMCRKYGEVEEVEILLHPRTR---------KHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTTC---------CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCHHHHHHHHHhcCCeeEEEEEECCCCC---------ceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3689999999999999988888887766 7899999999999999999999998776554
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.9e-05 Score=53.02 Aligned_cols=75 Identities=31% Similarity=0.368 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh-CCccCCeEEE
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSR-----FGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR-SHEICGQQVA 156 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~-----~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~-~~~i~g~~l~ 156 (221)
...++|.|.|||+.++++.|+-+|++ -|+|..+.... .-|+|+|.+.+.|+++|++ .|.|.+..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 45689999999999999999999987 24888887753 3789999999999999987 7899999999
Q ss_pred EEecCCCCC
Q 027630 157 IDSATPLDD 165 (221)
Q Consensus 157 V~~a~~~~~ 165 (221)
|.-..++..
T Consensus 78 V~P~~~~~~ 86 (104)
T 2dhx_A 78 LRPAPPRAP 86 (104)
T ss_dssp EEECCCCCC
T ss_pred EEcCCCCCc
Confidence 977665543
No 216
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=4.5e-06 Score=56.41 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=52.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|+.|+..+++..+.+.+...
T Consensus 17 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 17 ITEDMLRGIFEPFGKIDNIVLMKDSDTG---------RSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEECCSSSC---------CCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCHHHHHHHHHhcCCEeEEEEeecCCCC---------ceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4688999999999998877777665544 67899999999999999999999998887776543
No 217
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=3.4e-06 Score=58.01 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=52.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|+.|+..|++..+.+.+...
T Consensus 25 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 25 TSPDSLRRVFEKYGRVGDVYIPREPHTK---------APRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCHHHHHHHHTTTSCEEEEECCBCSSSC---------SBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCC---------CCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3688999999999888777766665544 67899999999999999999999998887776543
No 218
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.14 E-value=6.2e-07 Score=60.64 Aligned_cols=60 Identities=5% Similarity=0.085 Sum_probs=48.4
Q ss_pred CChHHHHHHhcccc-cccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHh-CCCCcCCCC
Q 027630 3 KDQDSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL-GAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~-~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~-~~~~~~~~~ 71 (221)
.++++|.++|++++ .|....|..++.+. ++++||||.|.+.++|++|+..+ ++..+.+.+
T Consensus 13 ~te~~l~~~F~~~G~~v~~v~i~~d~~t~---------~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 13 ATEDDIRGQLQSHGVQAREVRLMRNKSSG---------QSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CCHHHHHHHHHHHTCCCSBCCSSSCSSSC---------CCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CCHHHHHHHHHHhCCEeEEEEEEecCCCC---------CcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 47899999999987 78888887776666 78899999999999999999886 344444444
No 219
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.13 E-value=2.3e-06 Score=58.81 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=49.4
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
++++|.++|++++.|....|..++.+. +++|||||.|.+..+|++|+..|++..+.+
T Consensus 25 ~~~~L~~~F~~~G~i~~v~i~~d~~tg---------~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 25 LKKALTSLFSKAGKVVNMEFPIDEATG---------KTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp HHHHHHHHHHTTSCEEEEECCEETTTT---------EECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred HHHHHHHHHHhcCCEeEEEEEEcCCCC---------ccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 467889999999998888888777666 789999999999999999999999877665
No 220
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.12 E-value=4.8e-06 Score=56.81 Aligned_cols=62 Identities=6% Similarity=0.034 Sum_probs=50.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|.+++.|....|..++.+. ++++||||.|.+.++|..|+. +++..+.+.+...
T Consensus 22 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 22 CGETELREYFKKFGVVTEVVMIYDAEKQ---------RPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCHHHHHHHHSSSSCEEEEEECCCTTTC---------SCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCC---------CCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 4689999999999998877777665554 678999999999999999998 8887777766433
No 221
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.11 E-value=6.9e-06 Score=59.19 Aligned_cols=65 Identities=8% Similarity=0.014 Sum_probs=53.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG 76 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 76 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|++|+..+++..+.+.+.....
T Consensus 58 ~te~~L~~~F~~~G~I~~v~i~~d~~tg---------~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 58 TTERDLREVFSKYGPIADVSIVYDQQSR---------RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEECCSSSS---------CCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC---------ccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3689999999999999877777766555 6789999999999999999999998877776654433
No 222
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=4.2e-06 Score=57.69 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=52.5
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|..|+..|++..+.+.+....
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 27 VSEPLLWELFLQAGPVVNTHMPKDRVTG---------QHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCSSSC---------SBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC---------cCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4688999999999888777766665444 688999999999999999999999888777765443
No 223
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=3.3e-06 Score=57.23 Aligned_cols=63 Identities=10% Similarity=0.115 Sum_probs=52.4
Q ss_pred CChHHHHHHhcccccccCc-eEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGS-TVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~-~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|++++.|... .|..++.+. ++++||||.|.+.++|+.|+..+++..+.+.+...
T Consensus 17 ~t~~~l~~~F~~~G~i~~~~~i~~~~~~g---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 17 IDEKLLYDTFSAFGVILQTPKIMRDPDTG---------NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp CCHHHHHHHHHTTSCBSSCCEECCCTTTC---------SCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEEcCCCC---------CcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4689999999999999887 777665555 67899999999999999999999988777766433
No 224
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1e-05 Score=55.60 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=54.5
Q ss_pred CChHHHHHHhcc-cccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCC-cCCCCCCCCCC
Q 027630 3 KDQDSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT-LYDHPGSFYGR 77 (221)
Q Consensus 3 ~~~~~~~~~~~~-~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~-~~~~~~~~~~~ 77 (221)
-++++|.++|.. ++.|....|..++ +. ++++||||.|.+.++|..|+..+++.. +.+.+......
T Consensus 21 ~t~~~l~~~F~~~~G~v~~v~i~~~~-~g---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 21 VDDGMLYEFFVKVYPSCRGGKVVLDQ-TG---------VSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCHHHHHHHHHHHCTTEEEEEEEECT-TC---------CEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEECC-CC---------CccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 468999999998 9999888887775 54 678999999999999999999999888 77777655443
No 225
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=4.4e-06 Score=56.99 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=51.9
Q ss_pred CChHHHHHHhccccccc-CceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELG-GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~-g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.++|++++.|. ...|..++.+. ++++||||.|.+.++|+.|+..|++..+.+.+
T Consensus 21 ~t~~~l~~~F~~~G~i~~~v~i~~~~~~g---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 21 MDENFISRAFATMGETVMSVKIIRNRLTG---------IPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CCHHHHHHHHHHTTCCCCEEEEEECSSSC---------CEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCHHHHHHHHHHhCCcceEEEEeecCCCC---------CcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 36899999999999988 88888776655 67899999999999999999999988777765
No 226
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.06 E-value=4.2e-06 Score=58.79 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=53.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|+.|+..|++..+.+.+...
T Consensus 37 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 37 FGDQDLLQMFMPFGNVVSAKVFIDKQTN---------LSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCHHHHHHHHGGGSCCSEEEEEECSSSC---------SEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCC---------CcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3689999999999999888888776555 78899999999999999999999987777665433
No 227
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.06 E-value=3.2e-06 Score=55.60 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=51.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.+.|+.++.|....+..++.+. ++++||||.|.+.++|.+|+..+++..+.+.+.
T Consensus 13 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~---------~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 13 VDDETLRNAFKDFPSYLSGHVMWDMQTG---------SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp CCHHHHHHHHTTSTTEEEEEEEECTTTC---------CEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEcCCCC---------CccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3688999999999999888887776555 678999999999999999999999877766543
No 228
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.06 E-value=4.8e-06 Score=57.52 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=47.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCc
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 67 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~ 67 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|.+|+..|++..+
T Consensus 25 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 25 LDEKDLKPLFEEFGKIYELTVLKDRFTG---------MHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CCHHHHHHHHHHHSCCCEEECCCCSSSC---------SCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEecCCCC---------CcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 3688999999999988877776665554 6789999999999999999999988765
No 229
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=3.3e-05 Score=53.31 Aligned_cols=71 Identities=10% Similarity=0.162 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh--hCCccCCeEE
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRF-----GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR--RSHEICGQQV 155 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~--~~~~i~g~~l 155 (221)
...++|-+=+||..+++..|+.+..++ |.|..+.+..|- +-|+|+|.+...|-+|.. ++.+|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346788888999999999999999999 999999998873 479999999999999864 4458999999
Q ss_pred EEEe
Q 027630 156 AIDS 159 (221)
Q Consensus 156 ~V~~ 159 (221)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 230
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.05 E-value=6.6e-06 Score=55.09 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=55.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQ 82 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221)
.|++.|.++|.+++.|....+. .++|||||+|.+.++|..|+..||+..+.+.
T Consensus 19 ~te~~L~~lF~q~G~V~~~~l~---------------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr------------ 71 (89)
T 2wbr_A 19 IDGPTLRTLCMQHGPLVSFHPY---------------LNQGIALCKYTTREEANKAQMALNNCVLANT------------ 71 (89)
T ss_dssp CCCHHHHHHHHHHSCEEEEEEE---------------TTTTEEEEEESSHHHHHHHHHHHTTEEETTE------------
T ss_pred CCHHHHHHHHHhhCCEEEEEEc---------------CCCcEEEEEECCHHHHHHHHHHhcCCEECCc------------
Confidence 4788999999999888766653 2479999999999999999999999666554
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFS 107 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~ 107 (221)
+|.|. ..+|.++..+|.
T Consensus 72 ----~I~V~----~A~e~~~~~~~~ 88 (89)
T 2wbr_A 72 ----TIFAE----SPSENEVQSIMQ 88 (89)
T ss_dssp ----EEEEE----CCCHHHHHHHHC
T ss_pred ----EEEEE----ECCHHHHHHHhh
Confidence 56554 237778887775
No 231
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.04 E-value=7.1e-06 Score=56.54 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=48.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
-++++|.++|..++.|....|..++ +. ++++||||.|.+.++|+.|+..|++..+.+
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~-~g---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 27 QSEEDVLRLFQPFGVIDECTVLRGP-DG---------SSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECS-SS---------CEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECC-CC---------CcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 3688999999999998877777664 33 678999999999999999999999877766
No 232
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.04 E-value=3.6e-06 Score=57.39 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=44.4
Q ss_pred CChHHHHHHhccccc--ccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCC
Q 027630 3 KDQDSVENLMVDTHE--LGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP 65 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~--i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~ 65 (221)
.++++|.++|++++. +....|..++.+. +++|||||.|.+.++|++|+..+++.
T Consensus 21 ~tee~L~~~F~~~G~i~v~~v~i~~d~~tg---------~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 21 TVVDSIMTALSPYASLAVNNIRLIKDKQTQ---------QNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCHHHHHHHSTTTCCCCGGGEECCCCSSSS---------SCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHhhCCccEEEEEEEecCCCC---------CCceEeEEEECCHHHHHHHHHHhcCC
Confidence 478999999999885 4455566665555 78999999999999999999998763
No 233
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.03 E-value=6.8e-06 Score=53.94 Aligned_cols=58 Identities=5% Similarity=-0.040 Sum_probs=46.1
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC-CC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH-PG 72 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~-~~ 72 (221)
++++|.++|++++.|....+. +.+. ++++||||.|.+..+|+.|+..|++..+.+. +.
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~--~~~g---------~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYP--EEDG---------KTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECC--CBTT---------BCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred HHHHHHHHHhhcCCeEEEEec--CCCC---------cEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 358899999998887765544 2233 6789999999999999999999998877766 44
No 234
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.03 E-value=9.3e-06 Score=58.48 Aligned_cols=63 Identities=17% Similarity=0.074 Sum_probs=52.7
Q ss_pred CChHHHHHHhcccccccC--ceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCC----CcCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGG--STVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP----TLYDHPGSFY 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g--~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~----~~~~~~~~~~ 75 (221)
-++++|.++|.+++.|.. .+|..++.+. +++|||||.|.+. +|..|+..+++. .+.+.+....
T Consensus 35 ~te~~L~~~F~~~G~v~~~~v~i~~d~~tg---------~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~ 103 (131)
T 2m2b_A 35 STMDSILGALAPYAVLSSSNVRVIKDKQTQ---------LNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVE 103 (131)
T ss_dssp CCSHHHHHHHGGGCCCCTTTEECCBCSSSS---------SBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCE
T ss_pred CCHHHHHHHHHHhCCcceeeEEEEEcCCCC---------CcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEE
Confidence 368999999999999965 6777776666 7889999999999 999999999998 7777765443
No 235
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.03 E-value=7.9e-06 Score=56.91 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=53.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|+.++.|....|..++.+. ++++||||.|.+.++|+.|+..+++..+.+.+...
T Consensus 38 ~te~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 38 ITEDMLRGIFEPFGRIESIQLMMDSETG---------RSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEEETTTT---------EEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEcCCCC---------ccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4689999999999999888887776555 78899999999999999999999987777665433
No 236
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=3.5e-06 Score=57.96 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=52.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGS 73 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~ 73 (221)
-++++|.++|.+++.|....|..++.+. ++++||||.|.+.++|..|+..+++..+.+.+..
T Consensus 27 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 27 TRETDLQELFRPFGSISRIYLAKDKTTG---------QSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCHHHHHTTSTTTCCEEEEEEEECSSSC---------SEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCHHHHHHHHHhCCCeEEEEEeecCCCC---------ceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4688999999999999888887776555 6789999999999999999999998877766543
No 237
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=3.4e-06 Score=55.83 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=50.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGS 73 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~ 73 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|+.|+..|++..+.+....
T Consensus 17 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 17 TTDQDLVKLCQPYGKIVSTKAILDKTTN---------KCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCHHHHHTTSTTTSCEEEEEEECCSSSC---------SCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC---------CcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 3688999999999988877777665554 6789999999999999999999887666555443
No 238
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.02 E-value=2.5e-06 Score=56.69 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=50.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.++|+.++.|....+..++.+. ++++||||.|.+.++|+.|+..+++..+.+.+
T Consensus 18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 18 ITTAAIAAAFAPFGRISDARVVKDMATG---------KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTC---------CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCCC---------ccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4688999999999999888777766555 67899999999999999999999887665543
No 239
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.02 E-value=4.7e-06 Score=58.52 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=51.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|..++.|....|..++.+. ++++||||.|.+.++|+.|+..|++..+.+.+.
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 27 ITTEDIKAAFAPFGRISDARVVKDMATG---------KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTC---------CEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEcCCCC---------CcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3688999999999999888887776555 678999999999999999999998877776654
No 240
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=4e-06 Score=57.20 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=49.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|..++.|....|..++.+. ++++||||.|.+.++|+.|+..+++..+.+.+.
T Consensus 20 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 20 SSEEDLEKLFSAYGPLSELHYPIDSLTK---------KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCCCTTTC---------CCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCCC---------CcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 4688999999999888766666555444 678999999999999999999998877766553
No 241
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=4.4e-06 Score=57.27 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=51.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGS 73 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~ 73 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|..|+..+++..+.+.+..
T Consensus 24 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 24 TNEQSLEQVFSKYGQISEVVVVKDRETQ---------RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCHHHHHHHHHHHSCCCEEEECCCSSSC---------SCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCC---------CcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4688999999999988877776665444 6789999999999999999999998887776643
No 242
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.01 E-value=6.7e-06 Score=58.05 Aligned_cols=60 Identities=8% Similarity=0.114 Sum_probs=50.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
.++++|.++|++++.|....|..++ +. ++++||||.|.+.++|++|+..+++..+.+.+.
T Consensus 19 ~t~~~l~~~F~~~G~i~~v~i~~~~-~g---------~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 19 TNEKMLKAVFGKHGPISEVLLIKDR-TS---------KSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp CCHHHHHHHHHTSSCCSEEEEECST-TT---------TCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECC-CC---------CcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4689999999999999877777665 44 678999999999999999999998887777663
No 243
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=3.1e-06 Score=58.06 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=51.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|+.|+..|++..+.+.+.
T Consensus 24 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 24 VDDKVLHAAFIPFGDITDIQIPLDYETE---------KHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCHHHHHHHHTTTSCCCCEECCCCSSSC---------CCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCHHHHHHHhhccCCEEEEEEEecCCCC---------CcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3689999999999999887777665555 678999999999999999999998877666543
No 244
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=4.9e-06 Score=57.47 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=51.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|+.++.|....|..++.+. ++++||||.|.+.++|+.|+..+++..+.+.+.
T Consensus 35 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 35 ATEEDIHDKFAEYGEIKNIHLNLDRRTG---------YLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTS---------SEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCHHHHHHHHhccCCeEEEEEEecCCCC---------ceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3688999999999999888887776655 778999999999999999999999877666543
No 245
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.99 E-value=1e-05 Score=55.23 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=50.1
Q ss_pred CChHHHHHHhcccccccC--------ceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGG--------STVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g--------~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.+.|++++.|.. ..|..++.+. ++++||||.|.+.++|..|+..|++..+.+.+
T Consensus 25 ~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g---------~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 25 VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG---------KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTC---------SEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCC---------CeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 468999999999999887 6677666555 78899999999999999999999987766543
No 246
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=8e-06 Score=57.10 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=50.7
Q ss_pred CChHHHHHHhccccccc--------CceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCC
Q 027630 3 KDQDSVENLMVDTHELG--------GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGS 73 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~--------g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~ 73 (221)
-++++|.++|.+++.|. ...|..++.+. ++++||||.|.+.++|+.|+..|++..+.+.+..
T Consensus 27 ~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (113)
T 2cpe_A 27 VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG---------KPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK 96 (113)
T ss_dssp CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTC---------SBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCC---------CeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEE
Confidence 46889999999999887 46666655544 6789999999999999999999998877766543
No 247
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.98 E-value=3.6e-06 Score=57.69 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=50.5
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG 76 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 76 (221)
.++++|.++|.+++.|.. .+.+++.+. ++++||||.|.+.++|++|+. +++..+.+.+.....
T Consensus 29 ~t~~~l~~~F~~~G~v~~-~~~~~~~~g---------~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 29 KSVAELKVAISELFAKND-LAVVDVRTG---------TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCHHHHHHHHHHHHHHHT-CCCCEEEEE---------TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCHHHHHHHHHHhCCcce-EEEecCCCC---------CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 468899999999988877 555555554 678999999999999999998 988877776654433
No 248
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=7.1e-06 Score=57.09 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=50.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhC------CCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG------APTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~------~~~~~~~~~ 72 (221)
-++++|.++|..++.|....|..++.+. ++++||||.|.+.++|..|+..++ +..+.+.+.
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l 93 (111)
T 1x4h_A 27 SEEEALGEVLQQFGDLKYVRVVLHPDTE---------HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL 93 (111)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCSSSC---------CBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC---------CCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEE
Confidence 4689999999999998877777665554 678999999999999999999998 666655543
No 249
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=1e-05 Score=55.91 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=50.8
Q ss_pred CChHHHHHHhcccccccCceEeec-cccCCCCCCCCccccCCceeEEEeehhhHHHHHHHh-CCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVD-RATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL-GAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~-~~~~~~~~~~~~ 74 (221)
-++++|.++|..++.|....|..+ +.+. ++++||||.|.+.++|.+|+..+ ++..+.+.+...
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 27 ANQREIRELFSTFGELKTVRLPKKMTGTG---------AHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCCCCSSSC---------SSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCHHHHHHHHHccCCeEEEEEecCCCCCC---------CcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 368899999999988876666555 3333 67899999999999999999999 888777766533
No 250
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.97 E-value=6e-06 Score=55.77 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=50.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
.++++|.++|.+++.|....+..++.+. ++++||||.|.+.++|++|+..+++..+.+.+
T Consensus 27 ~t~~~l~~~F~~~G~i~~~~~~~~~~~g---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 27 VSIDEILDFFYGYQVIPGSVCLKYNEKG---------MPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp CCHHHHHHHTTTSCBCTTCCEEEECTTS---------CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCHHHHHHHHHhcCCccceEEEEeCCCC---------CEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 4688999999999999888887776555 67899999999999999999999887765553
No 251
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.96 E-value=5.3e-06 Score=61.84 Aligned_cols=59 Identities=8% Similarity=-0.027 Sum_probs=51.3
Q ss_pred CChHHHHHHhcccc--cccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTH--ELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~--~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.++++|.++|..++ .|....|..++.+. +++|||||.|.+.++|++|+..|++..+.+.
T Consensus 67 ~te~~L~~~F~~~G~i~v~~v~i~~d~~tg---------~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 67 TTDQQLIQVIRSIGVYDVVELKFAENRANG---------QSKGYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp CCHHHHHHHHHHTTCCCEEEEEEEECTTTC---------CEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred CCHHHHHHHHHHHCCccEEEEEEEecCCCC---------ccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 46899999999999 88888888887776 7899999999999999999999988665544
No 252
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.96 E-value=6.4e-06 Score=56.03 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=52.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|+.++.|....|..++..+. ..++++||||.|.+.++|+.|+..|++..+.+.+...
T Consensus 17 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~g------t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 17 TTEETLKGVFSKVGAIKSCTISKKKNKAG------VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEEEECTTC------CEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCC------CcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46899999999999998777777665110 0167899999999999999999999988777765433
No 253
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=6.9e-06 Score=57.58 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=52.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|.+++.|....+.++..+. ++++||||.|.+.++|+.|+..|++..+.+.+...
T Consensus 37 ~t~~~l~~~f~~~G~v~~~~~~~~~~~g---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 37 VTERDLVSLFARFQEKKGPPIQFRMMTG---------RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCHHHHHHHTHHHHHSSSSCCEEEEECS---------SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCHHHHHHHHHHhCCccceEEEEEcCCC---------ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4688999999999998877777776544 67899999999999999999999998887776543
No 254
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.96 E-value=6.1e-06 Score=56.12 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=51.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
.++++|.++|.+++.|....+..++.+. ++++||||.|.+.++|+.|+..+++..+.+.+.
T Consensus 27 ~t~~~l~~~F~~~G~v~~~~~~~~~~~g---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 27 VSIDEILDFFYGYQVIPGSVCLKYNEKG---------MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCHHHHHHHTTTSCCCTTTCEEEECSSS---------CEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCHHHHHHHHHHcCCccceEEEEECCCC---------CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 4688999999999999888887776655 678999999999999999999999877666543
No 255
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=1.5e-05 Score=51.54 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=48.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.+.|++++.|....+..++.+. +++++|||.|.+.++|+.|+..++ ..+.+.+
T Consensus 12 ~t~~~l~~~F~~~G~v~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~ 70 (77)
T 1uaw_A 12 TTQEGLREYFGQFGEVKECLVMRDPLTK---------RSRGFGFVTFMDQAGVDKVLAQSR-HELDSKT 70 (77)
T ss_dssp CCSHHHHHHHTTTSCCCCEEEECCCCSS---------SCSSEEEECCCCTTHHHHHHHTTT-CCCSSCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCCCC---------CcCceEEEEEcCHHHHHHHHHhCC-CccCCEE
Confidence 3688999999999999888877665554 678999999999999999999988 5555543
No 256
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=1.1e-05 Score=55.40 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=50.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|.+++.|....|..+ +. ++++||||.|.+.++|+.|+..|++..+.+.+...
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~--~g---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 27 IDDERLRKAFSPFGTITSAKVMME--GG---------RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCHHHHHHTTTTTSCEEEEEEEEC--SS---------SEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCHHHHHHHHHhcCCEEEEEEEcC--CC---------CcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 468899999999999887777665 33 67899999999999999999999998877766533
No 257
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=1.2e-05 Score=55.55 Aligned_cols=58 Identities=7% Similarity=0.021 Sum_probs=47.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
.++++|.+.|+.++.|....|..++. . +++|||||.|.+.++|..|+. +++..+.+.+
T Consensus 23 ~te~~L~~~F~~~G~v~~v~i~~d~~-g---------~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~ 80 (103)
T 1s79_A 23 ATLDDIKEWLEDKGQVLNIQMRRTLH-K---------AFKGSIFVVFDSIESAKKFVE-TPGQKYKETD 80 (103)
T ss_dssp CCHHHHHHHHHTSSCEEEEEEECCCT-T---------SCCCEEEEEESSHHHHHHHHT-SSCCCCTTTT
T ss_pred CCHHHHHHHHhhcCCEEEEEEEECCC-C---------CCccEEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence 46899999999999988777776543 3 688999999999999999998 7766555543
No 258
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.93 E-value=1.4e-05 Score=56.97 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=51.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|..++.|....|..++.+. ++++||||.|.+.++|++|+..|++..+.+.+.
T Consensus 34 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 34 ATEEDIHDKFAEYGEIKNIHLNLDRRTG---------YLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCTTTS---------SBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC---------ccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 3688999999999988777776665555 678999999999999999999999887766654
No 259
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.93 E-value=9.1e-06 Score=53.64 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=49.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
-++++|.++|++++.|....+..++.+. +++++|||.|.+.++|..|+..+++..+.+.
T Consensus 19 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 19 VDDKVLHAAFIPFGDITDIQIPLDYETE---------KHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCEETTTT---------EECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCHHHHHHHHhccCCEEEEEEEECCCCC---------ccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3688999999999888877776665554 7789999999999999999999988766554
No 260
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=6.8e-06 Score=56.16 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=49.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.++|.+++.|....|..++ +. ++++||||.|.+.++|..|+..+++..+.+.+
T Consensus 29 ~t~~~l~~~F~~~G~i~~v~i~~~~-~g---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 29 CTKEELEEICKAHGTVKDLRLVTNR-AG---------KPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECT-TS---------CEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCHHHHHHHHHhCCCeEEEEEEECC-CC---------CEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3688999999999998877777665 44 67899999999999999999999886665554
No 261
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.92 E-value=6.5e-06 Score=55.87 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=49.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|++++.|....|..++.+. ++++||||.|.+.++|+.|+..+++..+.+.+.
T Consensus 14 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 14 QTEEQILDLCSNVGPVINLKMMFDPQTG---------RSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCTTTC---------CBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCC---------ccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3688999999999888777766665444 678999999999999999999998877665543
No 262
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=8.5e-06 Score=55.98 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=51.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.++|+.++.|....+..++.+. ++++||||.|.+.++|..|+..+++..+.+.+
T Consensus 20 ~~~~~l~~~f~~~G~i~~~~i~~~~~~g---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 20 ATEEQLKDIFSEVGPVVSFRLVYDRETG---------KPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp SCHHHHHHHHHTTSCCSEEEEEEETTTT---------EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEeCCCCC---------ccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3688999999999999888888776555 78899999999999999999999887765553
No 263
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.91 E-value=8.4e-06 Score=59.18 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=52.1
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
++++|.++|+.++.|....|..++.+. ++++||||.|.+.++|+.|+..+++..+.+.+....
T Consensus 60 te~~L~~~F~~~G~i~~v~i~~~~~~g---------~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 60 SPDTLRRVFEKYGRVGDVYIPRDRYTK---------ESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp HHHHHHHHHGGGSCCSEEECCCCSSSS---------SCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCC---------ccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 578999999999988777766655444 678999999999999999999999988877765444
No 264
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=1.2e-05 Score=55.45 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=51.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|.+++.|....|..++.+. ++++||||.|.+.++|++|+.. ++..+.+.+...
T Consensus 28 ~t~~~l~~~F~~~G~v~~v~i~~~~~~g---------~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 28 TTQETLRSYFSQYGEVVDCVIMKDKTTN---------QSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECSSSC---------CEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCCCCC---------CcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 4689999999999999888887776555 6789999999999999999998 776666655433
No 265
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.90 E-value=5.7e-06 Score=60.10 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=51.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|+.+++|....|..++.+. ++++||||.|.+.++|.+|+..+++..+.+.+.
T Consensus 54 ~~~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 54 VDEVQLRQLFERYGPIESVKIVCDRETR---------QSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEEEETTTT---------EEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEcCCCC---------CcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3688999999999999888888776655 788999999999999999999998877666543
No 266
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.90 E-value=9.4e-06 Score=64.30 Aligned_cols=59 Identities=8% Similarity=-0.000 Sum_probs=50.9
Q ss_pred CChHHHHHHhcccc--cccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTH--ELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~--~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.++++|+++|++++ .|....|..++.+. ++++||||.|.+.++|.+|+..|++..+.+.
T Consensus 80 ~te~~L~~~F~~~G~~~v~~v~i~~d~~tg---------~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 80 TTDEDLTEAVHSLGVNDILEIKFFENRANG---------QSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp CCHHHHHHHHHTTTCCCEEEEEEEECTTTC---------CEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CCHHHHHHHHHHHCCcceEEEEEEecCCCC---------ccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 46889999999999 89888888887776 7899999999999999999999988665443
No 267
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.90 E-value=5.4e-06 Score=55.48 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=52.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG 76 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 76 (221)
-++++|.++|++++.|....+..++.+. ++++||||.|.+.+ |+.|+..+++..+.+.+.....
T Consensus 13 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 13 ATSEQVKELFSQFGKVFNVKLIYDRETK---------KPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp SSHHHHTTTHHHHTCCSEEEECCCSSSC---------CCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred CCHHHHHHHHHhcCCEEEEEEEEcCCCC---------CcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 3678899999999888877777665554 67899999999999 9999999999888777654443
No 268
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.90 E-value=8.8e-06 Score=54.21 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=50.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.+.|+.++.|....+..++.+. ++++||||.|.+.++|++|+ .+++..+.+.+.
T Consensus 18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l 77 (89)
T 3ucg_A 18 ATAEELEAHFHGCGSVNRVTILCDKFSG---------HPKGFAYIEFSDKESVRTSL-ALDESLFRGRQI 77 (89)
T ss_dssp CCHHHHHHHHGGGCCEEEEEEEESCSSS---------SCCEEEEEEESSTHHHHHHG-GGTTCEETTEEC
T ss_pred CCHHHHHHHHHhCCCEEEEEEEecCCCC---------CcceEEEEEECCHHHHHHHH-hcCCCEECCcEE
Confidence 3688999999999999888887776555 67899999999999999999 888877766554
No 269
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.89 E-value=1.3e-05 Score=56.53 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=48.9
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
++++|.++|++++.|....|..++.+. ++++||||.|.+.++|+.|+..+++..+.+.
T Consensus 53 t~~~l~~~F~~~G~i~~~~i~~~~~~g---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 53 TDTDLASTFLPFGNVISAKVFIDKQTS---------LSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CHHHHHHHTTTSCEEEEEEECCCSSSS---------CCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCC---------CcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 688999999999988877777665544 6789999999999999999999988766554
No 270
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.88 E-value=9.6e-06 Score=52.26 Aligned_cols=59 Identities=8% Similarity=0.133 Sum_probs=46.5
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.+.|++++.|....+..++.+. ++++||||.|.+.++|++|+. +++..+.+.+
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~ 69 (75)
T 2mss_A 11 TTVEDVKHYFEQFGKVDDAMLMFDKTTN---------RHRGFGFVTFESEDIVEKVCE-IHFHEINNKM 69 (75)
T ss_dssp CCHHHHHHHHHTTSCCSEECCCBCSSST---------TSCBEEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCC---------CcCcEEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence 3688999999999888876666555444 678999999999999999987 7776655543
No 271
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=6.1e-06 Score=55.69 Aligned_cols=59 Identities=8% Similarity=0.091 Sum_probs=49.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
-++++|.++|+.++.|....+..++.+. ++++||||.|.+.++|.+|+..+++..+.+.
T Consensus 27 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 27 TTERDLREVFSKYGPIADVSIVYDQQSR---------RSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECSSSS---------SEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEcCCCC---------CcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3688999999999999888887776555 6789999999999999999999988665544
No 272
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=54.24 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=48.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
-++++|.++|++++.|....+..++.+. ++++||||.|.+.++|..|+..+++..+.+.
T Consensus 28 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 28 LTNNDLYRIFSKYGKVVKVTIMKDKDTR---------KSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp SCHHHHHHHTTTTSCEEEEEECCCSSSC---------CCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCC---------CcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3688999999999888777776665544 6789999999999999999999988665443
No 273
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.86 E-value=1.8e-05 Score=54.08 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=47.9
Q ss_pred CChHHHHHHhcccccccCceEeecc-ccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDR-ATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
-++++|.++|++++ |....|..++ .+. ++++||||.|.+.++|..|+ .+++..+.+.+....
T Consensus 31 ~t~~~l~~~F~~~G-i~~v~i~~~~~~~g---------~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 31 VTEESIKEFFRGLN-ISAVRLPREPSNPE---------RLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp CSSSHHHHHSCSSC-EEEEECSCCTTTTC---------CCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCHHHHHHHHHhcC-CeEEEEEecCCcCC---------ccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 36788999999987 7666655544 233 67899999999999999999 898887777655443
No 274
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.85 E-value=7.7e-06 Score=56.90 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=49.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
.++++|.++|+.++.|....|..++.+. ++++||||.|.+..+|..|+..+++..+.+.+.
T Consensus 38 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 38 AQEDEIQEKFCDYGEIKNIHLNLDRRTG---------FSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCBCTTTS---------SBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCC---------CcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3688999999999888776666655544 678999999999999999999998877665543
No 275
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.85 E-value=7.5e-06 Score=54.38 Aligned_cols=62 Identities=10% Similarity=0.076 Sum_probs=50.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|+.++.|....+..++.+. .+++++|||.|.+.++|..|+..+++..+.+.+.
T Consensus 16 ~t~~~l~~~F~~~G~i~~~~i~~~~~~~--------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (88)
T 4a8x_A 16 VTKDHIMEIFSTYGKIKMIDMPVERMHP--------HLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 77 (88)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCEETTEE--------EEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHHHhCCCEEEEEEEeCCCCC--------CCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEE
Confidence 3688999999999988877776665544 1378999999999999999999999877766543
No 276
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.84 E-value=1.3e-05 Score=54.06 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=48.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|+.++.|....|..++. . ++++||||.|.+.++|.+|+..+++..+.+.+.
T Consensus 28 ~~~~~l~~~F~~~G~i~~v~i~~~~~-g---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 28 VREEILYELFLQAGPLTKVTICKDRE-G---------KPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTT-S---------CEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCC-C---------CCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 36899999999999888777666542 3 678999999999999999999998877665543
No 277
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=9.3e-06 Score=57.08 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=49.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|.+++.|....|..++.+. ++++||||.|.+.++|++|+..++. .+.+.+.
T Consensus 29 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 29 TTDASLRKYFEGFGDIEEAVVITDRQTG---------KSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCHHHHHHHHHTTSCEEEEEESCCSSSC---------CCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCHHHHHHHHHhCCCeeEEEEEEcCCCC---------ccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 3689999999999988877777665554 6789999999999999999999987 5555554
No 278
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=1.6e-05 Score=56.67 Aligned_cols=58 Identities=5% Similarity=0.062 Sum_probs=48.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.++++|.++|..++.|....+..+..+. ++++||||.|.+.++|.+|+. +++..+.+.
T Consensus 37 ~te~~l~~~F~~~G~v~~~~~~~~~~~g---------~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 37 AENKHVIDFFKKLDIVEDSIYIAYGPNG---------KATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCHHHHHHHSCSSCBCTTTCEEEECTTS---------SEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCHHHHHHHHHhcCCccceEEEEECCCC---------CCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 4689999999999999887777766555 788999999999999999999 887655444
No 279
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.83 E-value=1.2e-05 Score=59.69 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=50.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.++++|.++|++++.|....|..++.+. ++++||||.|.+.++|++|+..|++..+.+.
T Consensus 51 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 51 TTEEQIYELFSKSGDIKKIIMGLDKMKK---------TACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTC---------CEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC---------ccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4689999999999999888887776655 6789999999999999999999988766554
No 280
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.82 E-value=3.8e-05 Score=51.40 Aligned_cols=63 Identities=5% Similarity=-0.054 Sum_probs=50.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG 76 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 76 (221)
.++++|.++|.+++.|....|..+ +. ++++||||.|.+.++|+.|+..+++..+.+.+.....
T Consensus 20 ~t~~~l~~~f~~~G~v~~~~i~~~--~g---------~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 20 FTWKMLKDKFNECGHVLYADIKME--NG---------KSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEES--SS---------CEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCHHHHHHHHHhcCCEEEEEEEcc--CC---------CcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 468899999999988876666542 22 6789999999999999999999999888777655443
No 281
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.82 E-value=7.5e-06 Score=60.75 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=51.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|+.++.|....|..++.+. ++++||||.|.+.++|..|+..|++..+.+.+.
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTK---------ESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCT---------TSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCC---------ccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3688999999999988877777665555 788999999999999999999999877766654
No 282
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.82 E-value=2.2e-05 Score=54.42 Aligned_cols=59 Identities=8% Similarity=-0.003 Sum_probs=48.0
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.+++|.+.|++++.|....|..++.+. .+++||+||.|.+.++|.+|+..|++..+.+.
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~--------~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAP--------DDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCC--------TTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCC--------CCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 578899999999999888777654321 15789999999999999999999998766554
No 283
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=2.4e-05 Score=54.75 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=47.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
-++++|.++|..++.|....|..++.+. ++++||||.|.+.++|+.|+ .+++..+.+.
T Consensus 37 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 94 (114)
T 2cq4_A 37 IRPRDLEDFFSAVGKVRDVRIISDRNSR---------RSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV 94 (114)
T ss_dssp CCHHHHHHHHTTTSCEEEEEECCSCCSS---------SCCCCEEEEESCGGGHHHHH-HHTTEEETTE
T ss_pred CCHHHHHHHHHhCCCEeEEEEEecCCCC---------ccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe
Confidence 3688999999999998877777666555 67899999999999999999 8887655443
No 284
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.80 E-value=1.6e-05 Score=54.73 Aligned_cols=60 Identities=13% Similarity=0.251 Sum_probs=47.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|.+++ |....|..++.+. .++++||||.|.+.++|+.|+ .+++..+.+.+.
T Consensus 27 ~t~~~l~~~F~~~G-i~~v~i~~~~~~~--------g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 27 VTEESIKEFFRGLN-ISAVRLPREPSNP--------ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCHHHHHHHTTTSC-EEEEECCBCSSCT--------TSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCHHHHHHHHHHCC-ceEEEEecCCCCC--------CCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 46889999999887 7666665554441 167899999999999999999 888877766554
No 285
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.80 E-value=1.8e-05 Score=54.71 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=48.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
-++++|.++|..++.|....|..++ +. ++++||||.|.+.++|++|+..|++..+.+.
T Consensus 41 ~t~~~l~~~F~~~G~i~~v~i~~~~-~g---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 41 VSDADIQELFAEFGTLKKAAVHYDR-SG---------RSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECT-TS---------CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECC-CC---------CcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3688999999999998877777665 44 6789999999999999999999988776554
No 286
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.80 E-value=1e-05 Score=56.59 Aligned_cols=64 Identities=8% Similarity=-0.041 Sum_probs=49.4
Q ss_pred CChHHHH---HHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVE---NLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~---~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|. ++|.+++.|....|..++.+.+. .++++||||.|.+.++|++|+..|++..+.+.+.
T Consensus 27 ~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~------~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 27 LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGS------QGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSS------SCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCHHHHHHHHHHhhccCCEEEEEEecCCCcCcc------CCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 3577888 89999999887777655543311 2567999999999999999999999877766543
No 287
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.80 E-value=1.4e-05 Score=56.85 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=50.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|..++.|....|..++.+. ++++||||.|.+.++|..|+ .+++..+.+.+.
T Consensus 48 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 107 (124)
T 2jwn_A 48 STAQDLEAHFSSCGSINRITILCDKFSG---------HPKGYAYIEFAERNSVDAAV-AMDETVFRGRTI 107 (124)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEEECTTS---------SCEEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCC---------CcccEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 3689999999999999888888776555 67899999999999999999 788877766654
No 288
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.79 E-value=1.8e-05 Score=56.32 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=49.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.++|++++.|....|..++ +. ++++||||.|.+.++|..|+..+++..+.+.+
T Consensus 47 ~t~~~l~~~F~~~G~v~~v~i~~~~-~g---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 47 VSDADIQELFAEFGTLKKAAVDYDR-SG---------RSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEECCS-SS---------SCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCHHHHHHHHHhcCCeeEEEEEECC-CC---------CEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3688999999999999877777665 44 67899999999999999999999887665554
No 289
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=55.77 Aligned_cols=56 Identities=5% Similarity=-0.011 Sum_probs=45.0
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
++++|.++|++++.|....|. +.+. +++|||||.|.+..+|..|+..|++..+.+.
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~--~~~g---------~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYP--EEDG---------KTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECC--CBTT---------BSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred HHHHHHHHHhcCCCEEEEEee--CCCC---------CeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 468899999998888765554 2333 7889999999999999999999998766554
No 290
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=5.1e-05 Score=52.96 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=50.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.++|..++.|....|..++ +. ++++||||.|.+.++|+.|+..|++..+...+
T Consensus 37 ~t~~~l~~~F~~~G~i~~~~i~~~~-~g---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 37 MDEQELENMLKPFGQVISTRILRDS-SG---------TSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCHHHHHHTTTTTSCEEEEEEEECS-SS---------CEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECC-CC---------CcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 3688999999999998888877765 44 67899999999999999999999987775553
No 291
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=2.3e-05 Score=54.71 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=49.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|.+++.|....|..++ +. ++++||||.|.+.++|+.|+..|++..+.+.+.
T Consensus 27 ~~~~~l~~~f~~~G~i~~~~i~~~~-~g---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 27 VGWKKLKEVFSMAGVVVRADILEDK-DG---------KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECT-TC---------SEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECC-CC---------CeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 3689999999999988877776654 23 678999999999999999999998877766554
No 292
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.75 E-value=2e-05 Score=54.09 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=48.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGS 73 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~ 73 (221)
-++++|.++|.++. |....|..++.+. ++++||||.|.+.++|++|+ .+++..+.+.+..
T Consensus 27 ~t~~~l~~~F~~~g-i~~v~i~~~~~~g---------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 27 TVQGDIDAIFKDLS-IRSVRLVRDKDTD---------KFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCHHHHHHHTTTSC-EEEEEEEECSSSC---------SEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCHHHHHHHHHhCC-ceEEEEeecCCCC---------ccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 46889999999884 7777777766555 67899999999999999999 8888777666543
No 293
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.73 E-value=4.3e-05 Score=52.93 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=45.5
Q ss_pred CChHHHHHHhccccc---ccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHE---LGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~---i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.++++|.+.|..++. |....|..++. . +++|||||.|.+.++|++|+. +++..+.+.
T Consensus 23 ~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g---------~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 23 CTMEDVLNFFSDCRIRNGENGIHFLLNRD-G---------KRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCSHHHHHHTTTSCBTTTTTTEECCCCTT-S---------TTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred CCHHHHHHHHHhcCCcCCcceEEEEECCC-C---------CEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 468899999999777 66666665543 3 788999999999999999999 777665544
No 294
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.73 E-value=6.1e-05 Score=54.73 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=45.4
Q ss_pred CChHHHHHHhccccc---ccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCc
Q 027630 3 KDQDSVENLMVDTHE---LGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 67 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~---i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~ 67 (221)
.++++|.+.|+.++. |....|..++. . +++|||||.|.+.++|++|+. +++..+
T Consensus 56 ~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g---------~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 56 CSVEDVQNFLSDCTIHDGAAGVHFIYTRE-G---------RQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp CCHHHHHHHTTTCCCSSSSTTEEEEECSS-S---------CEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCHHHHHHHHHHhCCcCceeEEEEEECCC-C---------CCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 478999999999888 77777777654 4 789999999999999999999 777444
No 295
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=2.9e-05 Score=53.45 Aligned_cols=58 Identities=7% Similarity=0.070 Sum_probs=45.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
.++++|.+.|++++.+ ...|..++ +. ++++||||.|.+.++|++|+. +++..+.+.++
T Consensus 27 ~te~~l~~~F~~~G~~-~v~i~~d~-~g---------~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (102)
T 1wez_A 27 ATENDIYNFFSPLNPM-RVHIEIGP-DG---------RVTGEADVEFATHEDAVAAMA-KDKANMQHRYV 84 (102)
T ss_dssp CCHHHHHHSSCSCCCS-EEEEEESS-SS---------CEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCC
T ss_pred CCHHHHHHHHHHcCce-EEEEEECC-CC---------CEeeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 4789999999998844 56666554 44 788999999999999999994 67766666554
No 296
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=2.7e-05 Score=53.93 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=47.3
Q ss_pred CChHHHHHHhccccc-ccCceEe-eccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhC--CCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHE-LGGSTVV-VDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG--APTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~-i~g~~v~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~--~~~~~~~~~~~ 74 (221)
-++++|.++|.+++. |....|. .++.+. ++++||||.|.+.++|+.|+..++ ...+.+.+...
T Consensus 20 ~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g---------~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 20 KKREEILEEIAKVTEGVLDVIVYASAADKM---------KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp SCHHHHHHHHHHHSTTEEEEECCSSSCTTT---------TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCHHHHHHHHHHhcCCceEEEEEccCCCCC---------CcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 468899999998876 7655554 333322 678999999999999999999985 46666665433
No 297
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.68 E-value=2.5e-05 Score=59.41 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=50.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|.+++.|....|..++ +. ++++||||.|.+.++|.+|+..+++..+.+.+.
T Consensus 100 ~te~~L~~~F~~~G~I~~v~i~~d~-~g---------~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 100 VSDADIQELFAEFGTLKKAAVDYDR-SG---------RSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp CCHHHHHHHHHHTSCCSEEEECCCT-TS---------SCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECC-CC---------CEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 4688999999999999877776665 44 678999999999999999999999877766544
No 298
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=4.8e-05 Score=52.10 Aligned_cols=59 Identities=5% Similarity=0.036 Sum_probs=47.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|.+++.|....|..+.. .+++||||.|.+.++|+.|+..|++..+.+.+.
T Consensus 27 ~t~~~l~~~f~~~G~v~~v~i~~~~~-----------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 27 FRDPDLRQMFGQFGKILDVEIIFNER-----------GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CCHHHHHHHGGGTSCEEEEEEECCTT-----------TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCC-----------CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 46889999999998887666665421 357999999999999999999998877766654
No 299
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.68 E-value=4.1e-05 Score=55.86 Aligned_cols=61 Identities=5% Similarity=0.045 Sum_probs=46.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
.++++|.++|++++ |....|..++. . ++++||||.|.+.++|++|+ .+++..+.+.++...
T Consensus 58 ~te~dL~~~F~~~G-i~~v~i~~d~~-g---------~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 58 ATENDIYNFFSPLN-PVRVHIEIGPD-G---------RVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp CCHHHHHHHHCSCC-CSEEECCCSSS-S---------CSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCHHHHHHHHHhcC-CeEEEEEECCC-C---------CCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 57899999999988 54444444422 2 78899999999999999999 778777777665443
No 300
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.67 E-value=4.5e-05 Score=53.03 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=44.5
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG 63 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~ 63 (221)
-++++|.++|+.++.|....|..++.+. ++++||||.|.+.++|..|+..++
T Consensus 37 ~te~~L~~~F~~~G~i~~v~i~~~~~tg---------~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 37 TTQEGLREYFGQFGEVKECLVMRDPLTK---------RSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp CCHHHHHHHHTTTSCEEEEEECCCTTTC---------CCTTCEEEEESSHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHccCCeEEEEEEECCCCC---------CcCcEEEEEECCHHHHHHHHHHCC
Confidence 4688999999999999877777665555 678999999999999999998865
No 301
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.66 E-value=7.3e-05 Score=51.76 Aligned_cols=60 Identities=3% Similarity=-0.106 Sum_probs=47.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|++++.|....|..+ . ++++||||.|.+.++|+.|+..|++..+.+.+...
T Consensus 34 ~t~~~l~~~F~~~G~v~~~~i~~~---~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 34 IRTKDIEDVFYKYGAIRDIDLKNR---R---------GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCHHHHHHHHGGGSCEEEEEECCS---S---------SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEC---C---------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 368899999999888875555221 1 46799999999999999999999988777665433
No 302
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.66 E-value=3.9e-05 Score=57.41 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=52.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
.++++|.++|.+++.|....|..++.+. ++++||||.|.+..+|..|+..|++..+.+.++
T Consensus 84 ~t~~~L~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 84 AQEDEIQEKFCDYGEIKNIHLNLDRRTG---------FSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTS---------SEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHhhcCCCEEEEEEEecCCCC---------cEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4688999999999999888887776666 778999999999999999999999877766654
No 303
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.66 E-value=4.8e-05 Score=53.53 Aligned_cols=50 Identities=6% Similarity=0.096 Sum_probs=41.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCc
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 67 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~ 67 (221)
.++++|+++|+++++|....|. ..++||||.|.+.++|++|+..|++..+
T Consensus 39 ~te~~L~~~F~~fG~v~~v~i~---------------~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 39 VSRNQLLPVLEKCGLVDALLMP---------------PNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CCHHHHHHHHHHHSCEEEEECC---------------TTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEe---------------CCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4789999999999988654332 1258999999999999999999999765
No 304
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.65 E-value=4.8e-05 Score=50.38 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=44.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHh
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 62 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~ 62 (221)
-++++|.+.|+.++.|....+..++.+. ++++||||.|.+.++|.+|+..+
T Consensus 23 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 23 TSKKDLKDYFTKFGEVVDCTIKMDPNTG---------RSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTTC---------CEEEEEEEEESSTHHHHHHHHSS
T ss_pred CCHHHHHHHHHhCCCEEEEEEeecCCCC---------ccccEEEEEECCHHHHHHHHHhC
Confidence 3689999999999999888888776555 78899999999999999999763
No 305
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.63 E-value=3.8e-05 Score=55.51 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=47.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
-++++|.++|.+++.|....|..++.+. ++++||||.|.+.++|++|+..+++..+.+
T Consensus 75 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 75 VDDKVLHAAFIPFGDITDIQIPLDYETE---------KHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCCCTTTC---------CCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCHHHHHHHHHhcCCEEEEEEeecCCCC---------CcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3688999999999888776666655444 678999999999999999999988755443
No 306
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=2.9e-05 Score=54.48 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=48.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.++|..++.|....|..++.+. ++++||||.|.+..+|+.|+.. ++..+.+.+
T Consensus 39 ~te~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 97 (116)
T 1x4b_A 39 TTEESLRNYYEQWGKLTDCVVMRDPASK---------RSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRV 97 (116)
T ss_dssp CCHHHHHHHHTSSCCCSEEEEECCTTTS---------SCCSEEEEECSSHHHHHHHHTS-CSEEETTEE
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCCC---------CcCceEEEEeCCHHHHHHHHHh-CCcEECCEE
Confidence 4689999999999999888887776555 6789999999999999999988 655554443
No 307
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.62 E-value=4.6e-05 Score=52.97 Aligned_cols=59 Identities=5% Similarity=0.034 Sum_probs=48.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|++++.|....+..++ . .+++||||.|.+.++|++|+..+++..+.+.+.
T Consensus 41 ~te~~l~~~F~~~G~i~~v~i~~~~--~---------~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 41 FRDPDLRQMFGQFGKILDVEIIFNE--R---------GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCHHHHHHHGGGTCCCSCEEECCBT--T---------BCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECC--C---------CCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3688999999999999877776553 1 467999999999999999999998877665543
No 308
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.62 E-value=4.2e-05 Score=49.11 Aligned_cols=57 Identities=5% Similarity=-0.027 Sum_probs=44.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
-++++|.++|++++.|....+..++.+. ++++||||.|.+.++|.+|+.. ++..+.+
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 67 (75)
T 1iqt_A 11 TPEEKIREYFGGFGEVESIELPMDNKTN---------KRRGFCFITFKEEEPVKKIMEK-KYHNVGL 67 (75)
T ss_dssp CCHHHHHHHHHHHSCCSEECCCCSCCCS---------SSCCCEEEECSSSHHHHHHHTT-SSCCBTT
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC---------CcCCEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 3688999999998888766666555444 6789999999999999999986 4444433
No 309
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=5.6e-05 Score=52.74 Aligned_cols=53 Identities=8% Similarity=0.081 Sum_probs=41.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCc
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 67 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~ 67 (221)
.++++|.+.|+.+ .|....|..++. . +++|||||.|.+.++|++|+ .+++..+
T Consensus 28 ~te~dl~~~F~~~-~v~~v~i~~d~~-g---------~~~G~afV~F~~~~~a~~Al-~~~~~~~ 80 (109)
T 2dnn_A 28 AMENDVRDFFHGL-RVDAVHLLKDHV-G---------RNNGNGLVKFLSPQDTFEAL-KRNRMLM 80 (109)
T ss_dssp CCHHHHHHHTTTS-CCCEEEECCCTT-C---------CCCSEEEEECSSHHHHHHHH-HTTTEEE
T ss_pred CCHHHHHHHhccC-CeeEEEEEECCC-C---------CCCeEEEEEECCHHHHHHHH-hcCCCeE
Confidence 4789999999988 776666655532 3 67899999999999999999 5666443
No 310
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.60 E-value=4.4e-05 Score=52.77 Aligned_cols=56 Identities=14% Similarity=0.085 Sum_probs=41.4
Q ss_pred HHHHHHh-cccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 6 DSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 6 ~~~~~~~-~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
++|.+.| ++++.|....|..++. . +++|||||.|.+..+|.+|+..|++..+.+.+
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~-~---------~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLG-D---------HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSS-S---------SSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHhhccCCceEEEEEEeCCC-C---------CccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 3445555 7778777666553321 1 67899999999999999999999987766554
No 311
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=3.5e-05 Score=52.80 Aligned_cols=59 Identities=8% Similarity=0.060 Sum_probs=47.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|+.++.|....|..++. .+++||||.|.+.++|+.|+..|++..+.+.+.
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~-----------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 27 VTEVLILQLFSQIGPCKSCKMITEHT-----------SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEECCCC-----------SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCC-----------CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 36889999999998887666665522 346899999999999999999998877666553
No 312
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.74 E-value=9.4e-06 Score=57.10 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=49.4
Q ss_pred ChHHHHHHhcccccccC--------ceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 4 DQDSVENLMVDTHELGG--------STVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g--------~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
++++|.++|++++.|.. ..|..++.+. ++++||||.|.+.++|+.|+..|++..+.+.+....
T Consensus 20 t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (116)
T 2lcw_A 20 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG---------KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVS 90 (116)
Confidence 57889999999888876 4555544444 678999999999999999999998877776665443
No 313
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=2.3e-05 Score=52.43 Aligned_cols=57 Identities=5% Similarity=-0.048 Sum_probs=46.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
.++++|.++|+.+ .|....|..+ .+. ++++||||.|.+.++|..|+. +++..+.+.+
T Consensus 22 ~t~~~l~~~F~~~-~i~~v~i~~~-~~g---------~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~ 78 (91)
T 2dgw_A 22 VTEKNVMEFLAPL-KPVAIRIVRN-AHG---------NKTGYIFVDFSNEEEVKQALK-CNREYMGGRY 78 (91)
T ss_dssp CCHHHHHHHHTTS-CCSEEEEEEC-TTS---------CEEEEEEEECSSHHHHHHHHH-SCSEEETTEE
T ss_pred CCHHHHHHHHhhC-CceEEEEEEC-CCC---------CCceEEEEEECCHHHHHHHHH-hCCceeCCcE
Confidence 4688999999998 8887777766 344 678999999999999999999 9887766554
No 314
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.57 E-value=5.8e-05 Score=52.28 Aligned_cols=58 Identities=3% Similarity=-0.060 Sum_probs=43.6
Q ss_pred HHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 6 DSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 6 ~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
++|.+.|++++.|....|..++... ..+++|++||.|.+.++|.+|+..||+..+.+.
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~-------~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR 87 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGV-------EVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 87 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTB-------CCTTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHccCCEEEEEEeccCCCC-------CcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 5677778888887766665443321 125789999999999999999999998766554
No 315
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.00011 Score=49.65 Aligned_cols=58 Identities=7% Similarity=-0.002 Sum_probs=46.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|.+++.|. ..+.. . ++++||||.|.+..+|+.|+..|++..+.+.+...
T Consensus 31 ~t~~~l~~~F~~~G~v~-~~~~~----~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 31 ARVSDLKRALRELGSVP-LRLTW----Q---------GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp CCHHHHHHHHHHTTCCC-SEEEE----E---------TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CcHHHHHHHHHhcCCEE-EEEEc----C---------CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 46889999999998885 44432 2 56799999999999999999999988777665433
No 316
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.57 E-value=9.3e-05 Score=50.91 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=44.7
Q ss_pred CChHHHHHHhcccccccC-ceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGG-STVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g-~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
.++++|.+.|..++.|.. ..|..+ .+. +++|||||.|.+.++|+.|+.. ++..+.+.+.
T Consensus 27 ~te~~l~~~F~~~G~v~~~v~i~~~-~~g---------~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 27 CSKEEIVQFFSGLEIVPNGMTLPVD-FQG---------RSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp CCHHHHHHHTTTCCEEEEEEECCBC-SSS---------CBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCHHHHHHHHHhcCCcceeEEEEEC-CCC---------CcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 468899999999888764 333333 333 7889999999999999999998 6666555543
No 317
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.57 E-value=5.5e-05 Score=52.99 Aligned_cols=53 Identities=9% Similarity=-0.057 Sum_probs=43.8
Q ss_pred CChHHHHHHhcccccc-cCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCC
Q 027630 3 KDQDSVENLMVDTHEL-GGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPT 66 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i-~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~ 66 (221)
.++++|.++|..++.| ....|..++ +. ++++||||.|.+.++|..|+.. ++..
T Consensus 27 ~t~~~l~~~F~~~g~v~~~v~i~~d~-~g---------~~~G~afV~F~~~~~a~~Al~~-~~~~ 80 (114)
T 2cpy_A 27 ITKMDVLQFLEGIPVDENAVHVLVDN-NG---------QGLGQALVQFKNEDDARKSERL-HRKK 80 (114)
T ss_dssp SCHHHHHHHTTTSCCCSTTEEECCCT-TS---------SCSSCEEEECSSHHHHHHHGGG-CSEE
T ss_pred CCHHHHHHHHHhCCCcCCeEEEEECC-CC---------CcceEEEEEECCHHHHHHHHHh-CCCc
Confidence 4688999999999888 777777665 44 6889999999999999999887 5543
No 318
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.56 E-value=0.0001 Score=51.02 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=45.9
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCC--CCcCCCCCCCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA--PTLYDHPGSFYGR 77 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~--~~~~~~~~~~~~~ 77 (221)
++++|+++|++++.|....|..+ ++||||.|.+.++|+.|+..++. ..+.+.+.....+
T Consensus 29 te~dL~~lF~~fG~V~~v~i~~~---------------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 29 TEGEVISLGLPFGKVTNLLMLKG---------------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CHHHHHHHHHHHCCEEEEEEETT---------------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CHHHHHHHHHhcCCEEEEEEEcC---------------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 68899999999999876665521 58999999999999999998753 5566666555443
No 319
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.54 E-value=0.00011 Score=52.13 Aligned_cols=58 Identities=9% Similarity=-0.009 Sum_probs=47.7
Q ss_pred CCChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 2 PKDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
+-++++|.++|++++.|....|. ++++||||.|.+.++|..|+..+++..+.+.+...
T Consensus 48 ~~te~~L~~~F~~~G~I~~v~i~---------------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 48 DMTPTLLRGAFSPFGNIIDLSMD---------------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp SCCHHHHHHHHSTTCCCSCEEEE---------------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCHHHHHHHHHccCCEEEEEEe---------------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 35789999999999998766653 35689999999999999999999988776665433
No 320
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=5.8e-05 Score=51.15 Aligned_cols=55 Identities=9% Similarity=0.006 Sum_probs=44.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|.+++.|....| . ++++||||.|.+.++|+.|+..|++..+.+.+.
T Consensus 25 ~t~~~l~~~F~~~G~i~~v~i------~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 25 MTPTLLRGAFSPFGNIIDLSM------D---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCHHHHHHHHTTTSCEEEEEE------E---------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCHHHHHHHHhhCCCEEEEEe------c---------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 478999999999988865554 1 457899999999999999999998876655543
No 321
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.53 E-value=0.0001 Score=52.87 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=41.2
Q ss_pred CChHHHHHHhccccccc--CceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELG--GSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~--g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.++++|.+.|+++ .|. ...|..++. . +++|||||.|.+.++|++|+...+ ..+.+.
T Consensus 54 ~te~dL~~~F~~~-~i~~~~v~i~~d~~-G---------rsrGfaFV~F~~~e~A~~Al~~~~-~~l~gR 111 (126)
T 2hgm_A 54 CTKEEIVQFFSGL-EIVPNGITLPVDPE-G---------KITGEAFVQFASQELAEKALGKHK-ERIGHR 111 (126)
T ss_dssp CCHHHHHHHTTTS-CEEEEEEECCCCSS-S---------SSCSEEEEEESSTTHHHHHHTTTT-CCBTTB
T ss_pred CCHHHHHHHHhcC-CceeeEEEEEECCC-C---------CCceEEEEEECCHHHHHHHHHHCC-CEECCE
Confidence 4789999999987 554 444444432 3 788999999999999999998643 444444
No 322
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.51 E-value=6.8e-05 Score=52.92 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=44.2
Q ss_pred CChHHHHHHhccccc---ccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCc
Q 027630 3 KDQDSVENLMVDTHE---LGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 67 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~---i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~ 67 (221)
.++++|.+.|+.++. |....|..++. . ++++||||.|.+.++|++|+. +++..+
T Consensus 29 ~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g---------~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 29 CSIEDVQNFLSDCTIHDGVAGVHFIYTRE-G---------RQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCHHHHHHHTTTSCBTTGGGGEEEEECSS-S---------CEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCHHHHHHHHHHcCCccCceeEEEEECCC-C---------CCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 478999999999887 67777776654 4 788999999999999999999 766443
No 323
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.51 E-value=0.00018 Score=47.86 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=45.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
-++++|.++|.+++.|....+. ++||||.|.+.++|+.|+..+++..+.+.+....
T Consensus 20 ~t~~~l~~~F~~~G~i~~v~~~-----------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 20 ATEQEIRSLFEQYGKVLECDII-----------------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CCHHHHHHHHHTSSCEEEEEEE-----------------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCHHHHHHHHHhCCCEEEEEEE-----------------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 3688999999998887655554 3799999999999999999999887777765443
No 324
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00013 Score=49.76 Aligned_cols=58 Identities=10% Similarity=-0.093 Sum_probs=46.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
-++++|.++|.+++.|....+. ++++||||.|.+.++|+.|+..+++..+.+.+....
T Consensus 39 ~~~~~l~~~f~~~G~i~~~~~~---------------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 39 ATEADLIPLFQNFGFILDFKHY---------------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEE---------------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred cCHHHHHHHHHhCCCEEEEEEe---------------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3688999999999888765554 346899999999999999999999877766654443
No 325
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=0.00018 Score=49.34 Aligned_cols=47 Identities=9% Similarity=0.002 Sum_probs=39.4
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 64 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~ 64 (221)
++++|+++|.++++|....|. . +++|||||.|.+..+|+.|+..++.
T Consensus 30 te~~L~~~F~~~G~V~~v~i~-----~---------~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLS-----S---------KKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEE-----S---------SSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CHHHHHHHHHhcCCEEEEEEc-----c---------CCCCEEEEEECCHHHHHHHHHhcCC
Confidence 589999999999998766654 1 5679999999999999999998543
No 326
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=5.6e-05 Score=51.54 Aligned_cols=57 Identities=4% Similarity=0.086 Sum_probs=43.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|.+++.| .+..+ .+. ++++||||.|.+.++|+.|+..+++..+.+.+.
T Consensus 27 ~t~~~l~~~F~~~g~v---~~~~~-~~g---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 27 ATEETLQEVFEKATFI---KVPQN-QNG---------KSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCHHHHHHHCSSCSEE---ECCBC-SSS---------CBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCHHHHHHHHHhCCEE---EEEEC-CCC---------CEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 4688999999987766 23222 222 678999999999999999999998876666543
No 327
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.48 E-value=7.3e-05 Score=64.76 Aligned_cols=60 Identities=5% Similarity=0.024 Sum_probs=51.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
.++++|.++|..++.|..+.|+.+..+. ++++||||.|.+..+|.+|+..|++..+.+.+
T Consensus 114 ~te~~L~~~F~~~G~I~~v~i~~d~~tg---------~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 114 TTESKLRREFEVYGPIKRIHMVYSKRSG---------KPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred CCHHHHHHHHHHcCCeeEEEeeccCCCC---------CccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 3688999999999999888887776655 77899999999999999999999887766654
No 328
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.47 E-value=0.00043 Score=46.74 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=46.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhh
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 146 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ 146 (221)
...+.++| .+|+++...+|.++|+.||.| .|+++.|. -|||.|.+++.|..|+..
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 34566677 999999999999999999944 77888763 699999999999988863
No 329
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.47 E-value=8.4e-05 Score=52.64 Aligned_cols=61 Identities=7% Similarity=0.006 Sum_probs=47.4
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
+++|.+.|++++.|....|..++..... ..+++|++||.|.+.++|.+|+..|++..+.+.
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~~~~~~-----~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEKQGEEE-----DAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEEESSST-----TCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHhccCCEeEEEEeecCCCccc-----CCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 5778888888999988888777543100 126789999999999999999999998665544
No 330
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.44 E-value=0.00015 Score=50.88 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=43.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
.++++|.++|.++++|....|..+ +||||.|.+.++|++|+..|++..+.+.+
T Consensus 28 ~t~~~l~~~F~~~G~v~~~~i~~~----------------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 28 GSWQDLKDHMREAGDVCYADVYRD----------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp CCTTHHHHHHGGGSCEEEEEECTT----------------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCHHHHHHHHHhcCCeEEEEEecC----------------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 468899999999887765544322 79999999999999999999998877764
No 331
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=9.4e-05 Score=51.78 Aligned_cols=53 Identities=9% Similarity=-0.083 Sum_probs=41.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHh
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL 62 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~ 62 (221)
.++++|.++|++++.|. ..+..++.+. ...++++||||.|.+.++|++|+..+
T Consensus 20 ~te~~L~~~F~~~G~i~-~~~~~~~~~~------~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 20 IDEDEITASFRRFGPLV-VDWPHKAESK------SYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCHHHHHHHTTTTCCCC-EECTTSSSSC------CCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhcCCEE-EEEeecCCCC------CCCCcccEEEEEECCHHHHHHHHHhh
Confidence 46899999999999887 5554444331 11267899999999999999999987
No 332
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=0.00015 Score=49.62 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=43.5
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHH
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAA 61 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~ 61 (221)
-++++|.++|..++.|....|..++.+. ++++||||.|.+.++|..|+..
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g---------~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 27 TTEQDLKEYFSTFGEVLMVQVKKDLKTG---------HSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECSSSC---------SEEEEEEEEESSHHHHHHHHHS
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC---------CccceEEEEECCHHHHHHHHHc
Confidence 4688999999999999888887776655 7889999999999999999985
No 333
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.40 E-value=4.1e-05 Score=53.63 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=44.4
Q ss_pred CChHHHHHHhcccc-cccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~-~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
.++++|+++|++++ +|....|.. . ++++||||.|.+.++|+.|+..|++..+.+.++
T Consensus 40 ~te~dL~~~F~~~G~~v~~v~i~~----~---------~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 40 CSWQDLKDLARENSLETTFSSVNT----R---------DFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp CCHHHHHHHHHHHTCCCSEEECSS----C---------SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCHHHHHHHHHHhCCeeEEEEEEc----C---------CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 46889999999888 676444421 1 367999999999999999999999877666543
No 334
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=7.3e-05 Score=50.63 Aligned_cols=58 Identities=3% Similarity=-0.071 Sum_probs=44.5
Q ss_pred CChHHHH----HHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVE----NLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~----~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|+ ++|++++.|....|..++.+ ++||||.|.+.++|+.|+..+++..+.+.+.
T Consensus 21 ~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~------------rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 21 LSRKELQQLLQEAFARHGKVKSVELSPHTDY------------QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SCHHHHHHHHHHHHHHHSCEEEEEECSCCST------------TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCHHHHHHHHHHhccccCcEEEEEEEeCCCC------------CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3577888 88888887776655544321 5799999999999999999999877666543
No 335
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.00026 Score=47.99 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=46.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|++++.|....+. ++++||||.|.+.++|..|+..+++..+.+.+...
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~~~---------------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 27 ITEEEMRKLFEKYGKAGEVFIH---------------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCHHHHHHHTSTTCCCSEEEEE---------------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CCHHHHHHHHhhcCCeEEEEEe---------------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 4688999999999888655443 23589999999999999999999988877766543
No 336
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.00023 Score=48.11 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=43.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcC--CCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLY--DHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~--~~~~ 72 (221)
-++++|.++|++++.|....+.. .++||||.|.+.++|+.|+..+++..+. +.+.
T Consensus 29 ~t~~~l~~~F~~~G~v~~v~~~~---------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 29 TSLAALAREFDRFGSIRTIDHVK---------------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECS---------------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCHHHHHHHHHhcCCeeEEEEeC---------------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 36899999999988876544431 1579999999999999999999987776 5544
No 337
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.37 E-value=0.00013 Score=49.72 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=44.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|..+. ...+..++.+. ++++||||.|.+.++|+.|+..|++..+.+.+.
T Consensus 27 ~t~~~l~~~F~~~~---~~~~~~~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 27 TTEETLKESFDGSV---RARIVTDRETG---------SSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp CCHHHHHHTSTTCS---EEEEEECSSSC---------SEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCHHHHHHHhcCCe---EEEEEecCCCC---------CcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 36788999998642 23445444444 678999999999999999999999877766654
No 338
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.36 E-value=0.00015 Score=50.11 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=46.0
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
-++++|.++|..++.|....|..+ ++||||.|.+.++|+.|+..|++..+.+.+....
T Consensus 37 ~t~~~l~~~F~~~G~i~~v~i~~~---------------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 37 LTDQLMRQTFSPFGQIMEIRVFPE---------------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEETT---------------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEeCC---------------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 368899999998888765555432 5899999999999999999999887777665433
No 339
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.35 E-value=0.00019 Score=49.73 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=46.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
-++++|.++|.+++.|....| +++||||.|.+.++|+.|+..|++..+.+.+....
T Consensus 40 ~t~~~l~~~F~~~G~v~~v~i-----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 40 VKKSDVETIFSKYGRVAGCSV-----------------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp CCHHHHHHHHGGGSCCSEEEE-----------------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCHHHHHHHHHhCCCeEEEEE-----------------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 468999999999988876555 25899999999999999999999887777665443
No 340
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.34 E-value=0.00025 Score=50.83 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=41.6
Q ss_pred HHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCC
Q 027630 8 VENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFY 75 (221)
Q Consensus 8 ~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~ 75 (221)
|.++|++++.|.. |.+.+ +. +++|||||.|.+.++|..|+..|++..+.+.+....
T Consensus 50 L~~~F~~~G~I~~--v~i~~-~~---------~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 50 LYALASSQGDILD--IVVDL-SD---------DNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp HHHHHHHHSCEEE--EEECC-CC---------SSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred HHHHhccCCCeEE--EEecc-CC---------CcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3467777877753 33321 22 678999999999999999999999988887765443
No 341
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=9.7e-05 Score=51.15 Aligned_cols=51 Identities=10% Similarity=0.054 Sum_probs=42.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
.++++|.++|.+++.|....|..+ +||||.|.+.++|++|+..|++..+.+
T Consensus 27 ~t~~~l~~~F~~~G~i~~~~i~~~----------------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 27 GSWQDLKDHMREAGDVCYADVYRD----------------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEETT----------------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCHHHHHHHHHhcCCEeEEEEecC----------------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 468899999999888765555432 799999999999999999999877766
No 342
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.32 E-value=0.00023 Score=53.19 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=45.3
Q ss_pred CCChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 2 PKDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
+-++++|+++|+++++|....|..+ ++++||||+|.+.++|+.|+..|++..+++
T Consensus 57 ~vted~L~~~Fs~fG~V~~V~i~~k-------------~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 57 PVTLDVLHQIFSKFGTVLKIITFTK-------------NNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CCCHHHHHHHHHHHSCEEEEEEEES-------------SSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeC-------------CCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 3578999999999999876665322 235899999999999999999999987765
No 343
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00025 Score=47.91 Aligned_cols=55 Identities=4% Similarity=-0.004 Sum_probs=45.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
-++++|.++|++++.|....|. ++||||.|.+.++|..|+..+++..+.+.+...
T Consensus 23 ~t~~~l~~~F~~~G~v~~v~i~-----------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 23 VSKEDLFRIFSPYGHIMQINIK-----------------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp CCHHHHHHHHTTTCCCCEEEEE-----------------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCHHHHHHHHHhcCCEEEEEEe-----------------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3789999999999888765551 489999999999999999999988887776543
No 344
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.27 E-value=0.0001 Score=50.29 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=41.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHH
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYA 60 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~ 60 (221)
-++++|.++|+.++.|....|..++ +. ++++||||.|.+.++|+.|+.
T Consensus 21 ~t~~~l~~~F~~~G~i~~v~i~~~~-~g---------~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 21 MDETEIRSFFARYGSVKEVKIITDR-TG---------VSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECT-TS---------CEEEEEEEEESSCCCHHHHTT
T ss_pred CCHHHHHHHHHhCCCeEEEEEEECC-CC---------CccceEEEEECCHHHHHHHHh
Confidence 3689999999999999877777765 44 688999999999999999998
No 345
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.00074 Score=46.25 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC--ccCCeEEE
Q 027630 84 IGKKIFVGRLPQEA-T----AEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH--EICGQQVA 156 (221)
Q Consensus 84 ~~~~l~V~nLp~~~-t----e~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~--~i~g~~l~ 156 (221)
-.++|+|.||+.++ . .+.++++|..|+++....+++. -.-..|.|.+.++|.+|-..+| .+.|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999998865 2 2577999999999888877664 2256899999999999976665 78999999
Q ss_pred EEecCCCC
Q 027630 157 IDSATPLD 164 (221)
Q Consensus 157 V~~a~~~~ 164 (221)
|-++++..
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99998543
No 346
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.25 E-value=0.00024 Score=49.22 Aligned_cols=54 Identities=7% Similarity=0.115 Sum_probs=44.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGS 73 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~ 73 (221)
-++++|.++|.+++.|....+. ++||||.|.+.++|+.|+..|++..+.+.+..
T Consensus 43 ~t~~~L~~~F~~~G~i~~v~i~-----------------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 43 VQESELNEIFGPFGPMKEVKIL-----------------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp CCHHHHHHHHTTTSCCCEEEEE-----------------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCHHHHHHHHHhcCCEEEEEEE-----------------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3688999999999988766554 38999999999999999999998777665543
No 347
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.00021 Score=47.87 Aligned_cols=55 Identities=18% Similarity=0.112 Sum_probs=44.0
Q ss_pred CChHHHHHHhccccc-ccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCC-CCcCCCCCC
Q 027630 3 KDQDSVENLMVDTHE-LGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA-PTLYDHPGS 73 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~-i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~-~~~~~~~~~ 73 (221)
-++++|.++|.+++. |....+ .+++||||.|.+.++|+.|+..+++ ..+.+.+..
T Consensus 20 ~t~~~l~~~F~~~G~vv~~~~~----------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 20 VTADDLRQLFGDRKLPLAGQVL----------------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCHHHHHHHHHHTTCCCSSCEE----------------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCHHHHHHHHHHcCCceEEEEE----------------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 368999999999888 554444 1358999999999999999999998 777666543
No 348
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.24 E-value=0.00023 Score=52.21 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=45.9
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSF 74 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~ 74 (221)
++++|.++|+.++.|....|..+ +++||||.|.+.++|..|+..+++..+.+.+...
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~--------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN--------------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS--------------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC--------------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 67889999999888866555432 3689999999999999999999988777665433
No 349
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.00037 Score=49.34 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=43.5
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCC--CCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA--PTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~--~~~~~~~~ 72 (221)
-++++|+++|++++.|....|..+ ++||||.|.+.++|.+|+..++. ..+.+.+.
T Consensus 43 vte~dL~~lF~~fG~V~~v~i~~~---------------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 43 VTEGEVISLGLPFGKVTNLLMLKG---------------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp CCHHHHHHHHTTTSCCCEEEEEGG---------------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEeCC---------------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 368999999999999887665532 58999999999999999998753 45555554
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.20 E-value=0.00011 Score=53.44 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=47.2
Q ss_pred CChHHHHHHhcccccccCce--Eeec---cccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGST--VVVD---RATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~--v~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|..++.|.... +.++ ..+. ++++||||.|.+..+|..|+..|++..+.+.+.
T Consensus 57 ~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g---------~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 57 VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG---------RMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEET---------TTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCHHHHHHHHHHhCCcccccccceeeEEeccCC---------CcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 36889999999999887651 1111 1233 678999999999999999999999887776654
No 351
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.19 E-value=0.0007 Score=48.24 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=44.1
Q ss_pred CCChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCc-eeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 2 PKDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG-GYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
+-++++|.++|++++.|...+|. ++ .+| |||+|.+..+|..|+..|++..+.+
T Consensus 36 ~vt~~~L~~~Fs~yG~V~~v~i~-~~--------------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 36 PITVDVLYTVCNPVGKVQRIVIF-KR--------------NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp CCCHHHHHHHHTTTSCEEEEEEE-ES--------------SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred CCCHHHHHHHHHhcCCEEEEEEE-eC--------------CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 45789999999999998766663 21 165 9999999999999999999988776
No 352
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.19 E-value=0.00023 Score=50.69 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=41.3
Q ss_pred CChHHHHHHhcccccc----cCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCC
Q 027630 3 KDQDSVENLMVDTHEL----GGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP 65 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i----~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~ 65 (221)
.++++|.+.|++++.| ....|..+ .+. +++|||||.|.+.++|.+|+.. ++.
T Consensus 35 ~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~g---------r~~G~aFV~F~~~~~A~~Al~~-~~~ 90 (123)
T 2dha_A 35 ATAEEVVAFFGQHCPITGGKEGILFVTY-PDG---------RPTGDAFVLFACEEYAQNALRK-HKD 90 (123)
T ss_dssp CCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTS---------CEEEEEEECCSSHHHHHHHHTT-TTE
T ss_pred CCHHHHHHHHHhhCCccCCcceEEEEEC-CCC---------CEeeEEEEEECCHHHHHHHHHh-CCC
Confidence 5789999999998765 55666655 244 7889999999999999999986 543
No 353
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.00066 Score=45.49 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=45.5
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG 76 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 76 (221)
.++++|.++|.+++.|.. |.+++.+. + ||||.|.+.++|.+|+. +++..+.+.+.....
T Consensus 20 ~t~~~l~~~F~~~G~v~~--v~~~~~~g---------~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 20 VDSAQLSEYFLAFGPVAS--VVMDKDKG---------V---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CCHHHHHHHGGGTSCEEE--EEECSSSC---------C---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred CCHHHHHHHHHhcCCeEE--EEEcCCCC---------c---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 468999999999888773 34343332 2 99999999999999999 998888777655543
No 354
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.00049 Score=47.87 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=44.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
.++++|.++|.+++.|....|. ++++||||.|.+..+|+.|+..|++..+.+.+.
T Consensus 22 ~te~~L~~~F~~~G~i~~v~i~---------------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 22 TLAAEIQETFSRFGSLGRVLLP---------------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp CCHHHHHHHHHTTSCEEEEECC---------------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCHHHHHHHHHhcCCEEEEEEe---------------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 4688999999998887543332 246899999999999999999999987776654
No 355
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.16 E-value=0.00031 Score=47.65 Aligned_cols=51 Identities=4% Similarity=0.029 Sum_probs=42.3
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
++++|.++|+.++.|....+ +++||||.|.+.++|..|+..+++..+.+.+
T Consensus 36 t~~~L~~~F~~~G~v~~v~i-----------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 36 SKEDLFRIFSPYGHIMQINI-----------------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp CHHHHHHHHGGGSCEEEEEE-----------------CSSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CHHHHHHHHHhcCCEEEEEE-----------------eCCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 78999999999888765554 1589999999999999999999887665543
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.08 E-value=0.00036 Score=55.51 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=42.2
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCc
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTL 67 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~ 67 (221)
++++|.+.|.++++|....|. .+++||||.|.+..+|+.|+.+|++..+
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~---------------~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYV---------------ESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEE---------------GGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHccCCEEEEEEE---------------CCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 488999999999998866654 2368999999999999999999998777
No 357
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.07 E-value=0.00021 Score=48.13 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=42.9
Q ss_pred ChHHHH----HHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 4 DQDSVE----NLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 4 ~~~~~~----~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
++++|. ++|..++.|....+. + +. ++++||||.|.+.++|..|+..+++..+.+.+.
T Consensus 21 ~~~~l~~~l~~~f~~~G~i~~v~i~--~-~~---------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 21 KKDELKKSLHAIFSRFGQILDILVS--R-SL---------KMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp CHHHHHHHHHHHHGGGSCEEEEECC--H-HH---------HHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEEE--c-CC---------CcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 567777 888887777644433 1 22 678999999999999999999999877655543
No 358
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.06 E-value=0.00043 Score=45.98 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=42.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|++++.|....+. ++||||.|.+.++|+.|+..|++..+.+.+.
T Consensus 21 ~t~~~l~~~F~~~G~v~~~~~~-----------------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 21 CTSQELRSLFERRGRVIECDVV-----------------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEC-----------------SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCHHHHHHHHHcCCCEEEEEEE-----------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3688999999998887655443 2389999999999999999999877766654
No 359
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.06 E-value=0.00039 Score=46.07 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=43.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|+++ .|....|. ++++||||.|.+.++|+.|+..+++..+.+.+.
T Consensus 17 ~t~~~l~~~F~~~-~v~~~~i~---------------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 17 SNCQEVHDLLKDY-DLKYCYVD---------------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCHHHHHHHTCSS-CCCCEEEE---------------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCHHHHHHHHhhC-CeEEEEEe---------------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 4688999999998 77766552 457899999999999999999998876665543
No 360
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.06 E-value=0.00071 Score=47.32 Aligned_cols=54 Identities=9% Similarity=-0.039 Sum_probs=42.5
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCC--CCcCCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA--PTLYDHPG 72 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~--~~~~~~~~ 72 (221)
++++|.++|++++.|....|. ++++||||+|.+.++|..|+..++. ..+.+.+.
T Consensus 39 te~~L~~lF~~fG~V~~v~i~---------------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 39 SDSAVLKLAEPYGKIKNYILM---------------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp CSHHHHTTTTTTSCCSEEEEE---------------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CHHHHHHHHHhcCCEEEEEEe---------------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 688999999999999876663 2368999999999999999998753 34455443
No 361
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.06 E-value=0.00055 Score=46.87 Aligned_cols=48 Identities=4% Similarity=0.000 Sum_probs=39.7
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP 65 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~ 65 (221)
.++++|.++|++++.|....+. ++++||||+|.+.++|.+|+..+++.
T Consensus 33 ~te~~L~~lF~~fG~V~~v~i~---------------~~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 33 VVEADLVEALQEFGPISYVVVM---------------PKKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEE---------------TTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHhccCCEEEEEEE---------------cCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 4789999999999988755553 23589999999999999999998763
No 362
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.05 E-value=0.00077 Score=48.41 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=45.2
Q ss_pred CCChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCc-eeEEEeehhhHHHHHHHhCCCCcCC
Q 027630 2 PKDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHG-GYGAYNAYISAATRYAALGAPTLYD 69 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~a~~a~~~~~~~~~~~ 69 (221)
+-++++|.++|++++.|....|..+ +++| |||+|.+..+|..|+..|++..+++
T Consensus 39 ~vte~~L~~lFs~yG~V~~V~i~~~--------------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 39 PVTLDVLHQIFSKFGTVLKIITFTK--------------NNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp CCCHHHHHHHHTTSSCEEEEEEEEE--------------TTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred CCCHHHHHHHHhCcCCEEEEEEEcC--------------CCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 5689999999999999876655422 2466 9999999999999999999988876
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.0005 Score=47.84 Aligned_cols=55 Identities=7% Similarity=-0.064 Sum_probs=43.8
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
+++|.+.|.+++.|....| .++ .++|||||.|.+..+|..|+..|++..+.+.+.
T Consensus 40 e~~l~~~f~~~G~v~~v~i-~~~------------~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 94 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLL-FDR------------HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQI 94 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEE-ETT------------CTTCEEEEECSCHHHHHHHHHHSTTCEETTEEC
T ss_pred HHHHHHHHHccCCEeEEEE-ecC------------CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 4688889999988876644 322 257999999999999999999999877766654
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.04 E-value=0.00048 Score=48.34 Aligned_cols=52 Identities=13% Similarity=-0.035 Sum_probs=38.5
Q ss_pred HHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 6 DSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 6 ~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
++|.+.|++++.|....|. +. .++|++||.|.+.++|.+|+..|++..+.+.
T Consensus 32 edl~~~f~kfG~V~~v~i~--~~-----------~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVD--KN-----------SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp HHHHHHHTTTTCCSEEEEC--TT-----------CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred HHHHHHHhccCCEEEEEEe--cC-----------CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4566777778888654442 21 2379999999999999999999998665443
No 365
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.04 E-value=0.00097 Score=45.14 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 145 (221)
..++| ++|+++...+|.++|+.|| -..|.++.|. -|||.|.+++.|..|+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 34566 9999999999999999999 4578888773 69999999999998876
No 366
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.03 E-value=0.0014 Score=44.24 Aligned_cols=34 Identities=6% Similarity=-0.127 Sum_probs=30.9
Q ss_pred CceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCC
Q 027630 43 HGGYGAYNAYISAATRYAALGAPTLYDHPGSFYG 76 (221)
Q Consensus 43 ~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~ 76 (221)
|+|||.|.+.++|.+|+..|++..+++.|.+..-
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 8999999999999999999999999999875543
No 367
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.03 E-value=0.00055 Score=47.16 Aligned_cols=54 Identities=4% Similarity=-0.064 Sum_probs=41.4
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCC--CCcCCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA--PTLYDHPG 72 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~--~~~~~~~~ 72 (221)
++++|.++|++++.|....|.. .++||||.|.+.++|..|+..+++ ..+.+.+.
T Consensus 28 te~~L~~~F~~fG~V~~v~i~~---------------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 28 VEADLVEALEKFGTICYVMMMP---------------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CHHHHHHHHTTTSCEEEEEEET---------------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CHHHHHHHHHhCCCEEEEEEEC---------------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 6889999999999887644431 258999999999999999998753 33555554
No 368
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.01 E-value=0.00048 Score=45.25 Aligned_cols=56 Identities=9% Similarity=0.164 Sum_probs=41.3
Q ss_pred CChHHHHHHhcccccccC-------ceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGG-------STVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g-------~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.++++|.+.|++++.+.| ....++. . ++++||||.|.+.++|.+|+ .+++..+.+.
T Consensus 18 ~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~--~---------~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 18 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--N---------QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE--C---------SSSSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCHHHHHHHHHHHhhhcccccCCCCcceEEEe--c---------CCCcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 468899999998754444 3333332 2 33699999999999999999 9888766554
No 369
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.00 E-value=0.00032 Score=47.94 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=41.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.++|.+++.|....|. ++||||.|.+.++|++|+..|++..+.+.+
T Consensus 23 ~t~~~l~~~F~~~G~i~~v~~~-----------------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 23 VTEEILEKAFSQFGKLERVKKL-----------------KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEC-----------------SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCHHHHHHHHHhcCCEEEEEEE-----------------CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 3688999999998877654432 359999999999999999999887666554
No 370
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.00 E-value=0.00021 Score=48.04 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=41.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
-++++|.++|..++.|.- + ..+. ++++||||.|.+.++|..|+..+++..+.+.+
T Consensus 28 ~t~~~l~~~F~~~g~v~~----~-~~~~---------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 28 ITEDELKEVFEDALEIRL----V-SQDG---------KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp CCHHHHHHHHCSEEEECC----E-EETT---------EEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred CCHHHHHHHHhhCCcEEE----e-CCCC---------CcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 368889999998766531 1 2222 67899999999999999999999876665544
No 371
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0005 Score=49.25 Aligned_cols=54 Identities=13% Similarity=-0.020 Sum_probs=42.6
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEee----h-hh---HHHHHH--HhCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNA----Y-IS---AATRYA--ALGAP 65 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~-~~---a~~a~~--~~~~~ 65 (221)
-+++.|...|+++++|....++.++.+. +++|||||.|.+ + .+ |..|+. .+++.
T Consensus 18 tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg---------~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 18 IQDISIKNYFKKYGEISHFEAFNDPNSA---------LPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEEECTTTC---------CEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCC---------ceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 3688999999999999999999999998 889999999996 3 33 555555 34553
No 372
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.99 E-value=0.00061 Score=46.69 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=41.1
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhC--CCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALG--APTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~--~~~~~~~~~ 72 (221)
-++++|.++|++++.|....|.. .++||||.|.+.++|..|+..++ ...+.+.+.
T Consensus 27 ~te~~L~~~F~~fG~v~~v~i~~---------------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 27 VTETEVIALGLPFGKVTNILMLK---------------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCHHHHHHTTTTTSCEEEEEEET---------------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEC---------------CCCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 36889999999999886544331 25899999999999999999763 444555443
No 373
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.98 E-value=0.00059 Score=44.67 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=42.5
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHh-CCCCcCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAAL-GAPTLYDHP 71 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~-~~~~~~~~~ 71 (221)
-++++|.++|.+++.|....+.. +++||||.|.+.++|..|+..+ ++..+.+.+
T Consensus 24 ~t~~~l~~~f~~~G~i~~~~~~~---------------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 24 ITETDLRNHFYQFGEIRTITVVQ---------------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp SCHHHHHHHHHTTSCEEEEEEEG---------------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCHHHHHHHHHhCCCEeEEEEEC---------------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 36889999999988876555542 3589999999999999999988 776655543
No 374
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.00047 Score=47.39 Aligned_cols=53 Identities=6% Similarity=0.023 Sum_probs=41.1
Q ss_pred ChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCC--CcCCCC
Q 027630 4 DQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAP--TLYDHP 71 (221)
Q Consensus 4 ~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~--~~~~~~ 71 (221)
++++|.++|++++.|....|.. .++||||+|.+.++|.+|+..+++. .+.+.+
T Consensus 29 te~dL~~lF~~fG~V~~v~i~~---------------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 29 LRYQLLQLVEPFGVISNHLILN---------------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp HHHHHHTTTGGGSCEEEEEECS---------------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CHHHHHHHHHhcCCEEEEEEEc---------------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 6889999999999887666542 2379999999999999999987642 344443
No 375
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.96 E-value=0.00071 Score=56.64 Aligned_cols=53 Identities=8% Similarity=0.167 Sum_probs=43.3
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
.++++|+++|.++++|.. |.+. .+++||||.|.+.++|++|+..||+..+...
T Consensus 32 ~te~~L~~~F~~~G~V~~--v~~~-------------~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 32 VSRNQLLPVLEKCGLVDA--LLMP-------------PNKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CCHHHHHHHHHTTSCEEE--EECC-------------TTCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCHHHHHHHHHhcCCeEE--EEEe-------------CCCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 479999999999999864 3221 1458999999999999999999999777544
No 376
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.91 E-value=0.001 Score=44.97 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=40.9
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|.+++. |..+.++ ..++||||.|.+.++|..|+..|++..+.+.+.
T Consensus 27 ~t~~~l~~~F~~~g~--g~v~~~~-------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 27 TSEEMIEKEFNNIKP--GAVERVK-------------KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp CCHHHHHHHHHTTST--TCEEEEE-------------ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred CCHHHHHHHHHhcCC--cceEEEE-------------EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 468899999998832 2333333 125799999999999999999998877665543
No 377
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.001 Score=44.65 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=44.6
Q ss_pred CChHHHHHHhcccccccCc-eEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGS-TVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPGS 73 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~-~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~ 73 (221)
-++++|.++|..++.|... .|..++.+. .|||.|.+.++|..|+..|++..+.+.+..
T Consensus 27 ~t~~~l~~~F~~~G~v~~~~~i~~~~~~~-------------~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 27 LQWEVLDSLLVQYGVVESCEQVNTDSETA-------------VVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp SCHHHHHHHHHHHSCEEEEEEECCSSSSE-------------EEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCC-------------EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3688999999998888765 344443322 299999999999999999999877666543
No 378
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.81 E-value=0.0063 Score=40.75 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=47.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCC--cceEEEEEEcCHHHHHHHHh
Q 027630 86 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG--HRGFGFVTFAEEVVADRVSR 145 (221)
Q Consensus 86 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~--~~g~afV~f~~~~~a~~al~ 145 (221)
++|.|++||+.+||+++.+.+.....+..........+.+ .-.-|||.|.+.+++.....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 5899999999999999999999988776666655443332 33579999999988887765
No 379
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.78 E-value=0.00067 Score=45.23 Aligned_cols=53 Identities=6% Similarity=-0.025 Sum_probs=42.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHPG 72 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~~ 72 (221)
-++++|.++|++++.|....+. ++||||.|.+.++|.+|+..+++..+.+.+.
T Consensus 22 ~t~~~l~~~F~~~G~v~~v~~~-----------------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 22 CTNQELRAKFEEYGPVIECDIV-----------------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CCHHHHHHHHHTTSCCCEEEEC-----------------SSEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEE-----------------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 4688999999998887655543 2389999999999999999998877666543
No 380
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.63 E-value=0.0079 Score=42.22 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=54.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh-hCCccCC-eEEEEEe
Q 027630 82 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICG-QQVAIDS 159 (221)
Q Consensus 82 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~~~i~g-~~l~V~~ 159 (221)
....+-|-|-+.|+.. ...|...|++||.|.+..... ...+-.|.|.+..+|++||. +...|.+ -.|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 3446778888999885 566778899999999887622 23499999999999999996 5556664 5566665
Q ss_pred c
Q 027630 160 A 160 (221)
Q Consensus 160 a 160 (221)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 381
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.55 E-value=0.002 Score=49.34 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=42.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGA 64 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~ 64 (221)
.++++|.+.|..++.|....|..+.. . +++|||||.|.+.++|..|+..++.
T Consensus 121 ~t~~~L~~~F~~~G~v~~v~i~~~~~-~---------~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 121 ATLDDIKEWLEDKGQVLNIQMRRTLH-K---------AFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp CCHHHHHHHHTTSCCEEEEEEEECTT-C---------CEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHhcCCCEEEEEEEECCC-C---------CcccEEEEEECCHHHHHHHHHhCCC
Confidence 46889999999999888766665431 2 6789999999999999999987653
No 382
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.49 E-value=0.0021 Score=42.69 Aligned_cols=40 Identities=5% Similarity=0.032 Sum_probs=32.4
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHH
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAA 56 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~ 56 (221)
.++++|+++|++++.|....|.. .++|||||.|.+.++|+
T Consensus 23 ~te~~L~~~F~~~G~i~~v~i~~--------------~srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 23 MTAEELQQFFCQYGEVVDVFIPK--------------PFRAFAFVTFADDKVAQ 62 (89)
T ss_dssp CCHHHHHHHHTTTSCEEEEECCS--------------SCCSEEEEEESCHHHHH
T ss_pred CCHHHHHHHHhccCCEEEEEEee--------------CCCCEEEEEECCHHHHH
Confidence 46899999999998887655543 15799999999999887
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=96.43 E-value=0.0047 Score=48.05 Aligned_cols=62 Identities=6% Similarity=0.003 Sum_probs=47.7
Q ss_pred hHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHHHHHhCCCCcCCCC
Q 027630 5 QDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATRYAALGAPTLYDHP 71 (221)
Q Consensus 5 ~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a~~~~~~~~~~~~~ 71 (221)
++++.+.|.+++.|....|.......++ ..+++|++||.|.+.++|.+|+..|++..+.+.+
T Consensus 143 ~~dl~~e~~~~G~v~~~~v~~~~~~~~~-----~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 143 EGEVTEECGKFGAVNRVIIYQEKQGEEE-----DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEECCSST-----TCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred HHHHHHHHHccCCeEEEEEecCCCCccc-----CcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 5677777888888877777655444322 2378899999999999999999999997766654
No 384
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.74 E-value=0.035 Score=37.41 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=45.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCC--cceEEEEEEcCHHHHHHHHhh
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG--HRGFGFVTFAEEVVADRVSRR 146 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~--~~g~afV~f~~~~~a~~al~~ 146 (221)
...-+|.|+.||+.+||+++.+.+...-.+..........+.+ .-.-|||.|.+.+++..-.+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 3457899999999999999988888765553333332222222 224689999999988887663
No 385
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.73 E-value=0.0055 Score=40.26 Aligned_cols=42 Identities=5% Similarity=0.025 Sum_probs=32.8
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEeehhhHHHH
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYISAATR 58 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~a 58 (221)
-++++|.++|.+++.|....|.. .+++||||.|.+.++|+++
T Consensus 17 ~te~~l~~~F~~~G~i~~v~i~~--------------~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 17 MTEDELREFFSQYGDVMDVFIPK--------------PFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCHHHHHHHSTTTSCCCEEECCS--------------SCCSCCEEECSCHHHHHHT
T ss_pred CCHHHHHHHHHHcCCeeEEEEec--------------CCCCEEEEEECCHHHHHHH
Confidence 36889999999998887555542 1568999999999998643
No 386
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.64 E-value=0.0065 Score=52.69 Aligned_cols=55 Identities=15% Similarity=0.400 Sum_probs=41.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHh
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 145 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 145 (221)
.+.|+|. .|..+++.+|.++|++||.|.++.+-.+ ..-||.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-----~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-----FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-----SSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-----CCeEEEEEeCCHHHHHHHHh
Confidence 3789997 7999999999999999999999877654 23699999999999988764
No 387
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.50 E-value=0.018 Score=41.06 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=52.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEE-EEeecCC--------CCC-----CcceEEEEEEcCHHHHHHHHh-hCCc
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILD-VYVPKDP--------KRT-----GHRGFGFVTFAEEVVADRVSR-RSHE 149 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~~--------~tg-----~~~g~afV~f~~~~~a~~al~-~~~~ 149 (221)
..-|.|-+.|++.+. .+.+.|++||.|.+ ..+..+. .+. ....+-.|+|++..+|.+||. ++..
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 456677788776554 56678999999866 2222100 000 024588999999999999996 6778
Q ss_pred cCCeEEEEEecC
Q 027630 150 ICGQQVAIDSAT 161 (221)
Q Consensus 150 i~g~~l~V~~a~ 161 (221)
|.|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 899877777654
No 388
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.28 E-value=0.19 Score=33.39 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=21.4
Q ss_pred eeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 45 GYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 45 g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
+||.|.+..+|.+|+. |++..+.+.
T Consensus 52 ~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 52 MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 7999999999999998 888766554
No 389
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.70 E-value=1.3 Score=38.91 Aligned_cols=54 Identities=24% Similarity=0.379 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC
Q 027630 85 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS 147 (221)
Q Consensus 85 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~ 147 (221)
...++|+ +|..+...+|.++|+.||. ..|.++.+ -.|||.|.+.+.|..++...
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHH
Confidence 4566666 8889999999999999995 46776654 26999999999999888643
No 390
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.57 E-value=0.55 Score=32.91 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=33.2
Q ss_pred CChHHHHHHhcccccccCceEeeccccCCCCCCCCccccCCceeEEEee-hhhHHHHHHHhC
Q 027630 3 KDQDSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNA-YISAATRYAALG 63 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~i~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~a~~a~~~~~ 63 (221)
.+.++|.++|+++++|. .|+..... -.|||.|.+ ..+|..|+..++
T Consensus 31 ~sredLke~F~~~G~V~----~Vd~~~g~-----------~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 31 TCREDLHILFSNHGEIK----WIDFVRGA-----------KEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCHHHHHHHTCSSCCEE----EEECCTTC-----------SEEEEEESSCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhcCCEE----EEEEecCC-----------CEEEEEECCChHHHHHHHHHhh
Confidence 46889999999877664 33332221 138999999 788998988874
No 391
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.68 E-value=0.2 Score=33.53 Aligned_cols=25 Identities=8% Similarity=-0.033 Sum_probs=21.4
Q ss_pred eeEEEeehhhHHHHHHHhCCCCcCCC
Q 027630 45 GYGAYNAYISAATRYAALGAPTLYDH 70 (221)
Q Consensus 45 g~~~~~~~~~a~~a~~~~~~~~~~~~ 70 (221)
+||+|.+..+|.+|+. |++..+.+.
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 8999999999999998 887665554
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.62 E-value=1.5 Score=29.79 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=30.8
Q ss_pred ceeEEEeehhhHHHHHHHhCCCCcCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 027630 44 GGYGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEAT 98 (221)
Q Consensus 44 ~g~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 98 (221)
-+.|.|.....|++.+... ...+.+.+....+ .......+|++.+|++.++
T Consensus 49 ~AvItF~d~~va~rVL~k~-~H~L~~~~LsV~P---~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 49 GGVLTFREPADAERVLAQA-DHELHGAQLSLRP---APPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEEEESSHHHHHHHHTCS-CCBSSSSBCEEEE---CCCCCCCCCCCCSCCCCCC
T ss_pred cEEEEEcChHHHHHHhcCC-cceecCeEEEEEc---CCCCCcceEeeecCCCCCC
Confidence 4688888888887776651 1222222222211 2245667899999998765
No 393
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=49.04 E-value=14 Score=18.44 Aligned_cols=9 Identities=67% Similarity=1.069 Sum_probs=5.8
Q ss_pred CCCCCCCCC
Q 027630 213 RGDWRYRPY 221 (221)
Q Consensus 213 ~~~~r~~~~ 221 (221)
+.+.|-+||
T Consensus 21 R~drr~rpy 29 (29)
T 4fdd_B 21 RQDRRERPY 29 (29)
T ss_pred hhhcccCCC
Confidence 455577787
No 394
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=48.56 E-value=3.7 Score=34.18 Aligned_cols=10 Identities=30% Similarity=0.099 Sum_probs=5.1
Q ss_pred CCHHHHHHHh
Q 027630 97 ATAEDLRRYF 106 (221)
Q Consensus 97 ~te~~l~~~F 106 (221)
+++++|+++.
T Consensus 229 vt~~~l~~i~ 238 (358)
T 2pk2_A 229 VTLELLDELT 238 (358)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4555555443
No 395
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.47 E-value=51 Score=24.31 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=36.0
Q ss_pred CeEEEcCCCCC---------CCHHHHHHHh--hccCCeEEEEeecCCCCCCcceEEEEEEcCH-HHHHHHH
Q 027630 86 KKIFVGRLPQE---------ATAEDLRRYF--SRFGRILDVYVPKDPKRTGHRGFGFVTFAEE-VVADRVS 144 (221)
Q Consensus 86 ~~l~V~nLp~~---------~te~~l~~~F--~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~-~~a~~al 144 (221)
..+.|-|+|.. .+...|++.| +.|.++.-. .+.++. | +.|++.|.|.+. .-...|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~~~-G-h~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWNYL-G-HSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEECSS-B-EEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-ecccCC-C-CceeEEEEecCChHHHHHHH
Confidence 45667777762 3446888877 899887543 333322 2 789999999864 3444453
No 396
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=42.61 E-value=5.2 Score=33.28 Aligned_cols=7 Identities=14% Similarity=0.135 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 027630 137 EVVADRV 143 (221)
Q Consensus 137 ~~~a~~a 143 (221)
.+....+
T Consensus 231 ~~~l~~i 237 (358)
T 2pk2_A 231 LELLDEL 237 (358)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 397
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.02 E-value=1.2e+02 Score=19.71 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=51.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhCC---------ccCCe
Q 027630 83 RIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH---------EICGQ 153 (221)
Q Consensus 83 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~~---------~i~g~ 153 (221)
...+-|-|-|+|..+-..++.-.....|---.|..+. |-|.|.|.+.++..-||..+. +|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 4567788889999999888877777777655676643 479999999988888875321 55666
Q ss_pred EEEEEecCC
Q 027630 154 QVAIDSATP 162 (221)
Q Consensus 154 ~l~V~~a~~ 162 (221)
.+.|-...|
T Consensus 82 icdvistip 90 (129)
T 4eyt_A 82 ICDVISTIP 90 (129)
T ss_dssp EEEEECCCC
T ss_pred eeeeeecCC
Confidence 655544433
No 398
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.33 E-value=13 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=15.6
Q ss_pred HHHHHHhhccCCeEEEEeecCCCCCCcceEEEEEEc
Q 027630 100 EDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 135 (221)
Q Consensus 100 ~~l~~~F~~~G~i~~v~~~~~~~tg~~~g~afV~f~ 135 (221)
+++.++|...|.|+.. .+ .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 3455666666655433 32 5789999875
No 399
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.72 E-value=1e+02 Score=19.89 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=20.9
Q ss_pred CeEEEEeecCCCCCCcceEEEEEEcC
Q 027630 111 RILDVYVPKDPKRTGHRGFGFVTFAE 136 (221)
Q Consensus 111 ~i~~v~~~~~~~tg~~~g~afV~f~~ 136 (221)
+|++|++..-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788876666667889999999986
No 400
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=24.64 E-value=1.2e+02 Score=18.26 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=31.3
Q ss_pred CCHHHHHHHhhccC-----CeEEEEeecCCCCCCcceEEEEEEcCHHHHHHHHhhC--CccCCeEEEEEecC
Q 027630 97 ATAEDLRRYFSRFG-----RILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS--HEICGQQVAIDSAT 161 (221)
Q Consensus 97 ~te~~l~~~F~~~G-----~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~--~~i~g~~l~V~~a~ 161 (221)
+...+|..++..-+ .|-.+.+..+ |.||+.... .+..++..+ ..+.|+.+.|+.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 56667776666443 4556777443 889988753 344455433 36788888887664
No 401
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.32 E-value=1.2e+02 Score=20.04 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=20.6
Q ss_pred CeEEEEeecCCCCCCcceEEEEEEcC
Q 027630 111 RILDVYVPKDPKRTGHRGFGFVTFAE 136 (221)
Q Consensus 111 ~i~~v~~~~~~~tg~~~g~afV~f~~ 136 (221)
+|++|++..-...++-++||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788776665668889999999986
No 402
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.17 E-value=1.4e+02 Score=20.02 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=20.0
Q ss_pred CeEEEEeecCCCCCCcceEEEEEEcC
Q 027630 111 RILDVYVPKDPKRTGHRGFGFVTFAE 136 (221)
Q Consensus 111 ~i~~v~~~~~~~tg~~~g~afV~f~~ 136 (221)
+|++|++..-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46777776665667889999999986
Done!