BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027631
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1
Length = 222
Score = 246 bits (628), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 125/205 (60%), Positives = 158/205 (77%), Gaps = 6/205 (2%)
Query: 19 KYPV-KNSPMRFLPEVPDESGGKQIVPSPANGSK--NAYPLLKRIKKADRFATGVREHVR 75
+YP K +P+ +LP+ S K VP+ + S+ N +LKR KK D F GVR+ +
Sbjct: 12 RYPAAKATPVGYLPD--PASFNKFRVPASSKKSEQSNVKSILKR-KKTDGFTNGVRDQSK 68
Query: 76 LGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLL 135
+ PK+TE VK KLSLGARI+QVGG+ K+FK+LF V+EGE+L K QCYLSTTAGPIAGLL
Sbjct: 69 IRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLL 128
Query: 136 FISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTV 195
FIS++K+AFCSERSIK+ SP G+ R+HYKV IP+ KI RVNQS+N KPSQKY+E+VTV
Sbjct: 129 FISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTV 188
Query: 196 DNFDFWFMGFLNYQKALNHLQQAIS 220
D FDFWFMGFL+YQKA N L++A+S
Sbjct: 189 DGFDFWFMGFLSYQKAFNCLEKALS 213
>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370
PE=3 SV=1
Length = 219
Score = 239 bits (610), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/201 (60%), Positives = 150/201 (74%), Gaps = 4/201 (1%)
Query: 22 VKNSPMRFLPEVPDESGGKQIVPSPANGS--KNAYPLLKRIKKADRFATGVREHVRLGPK 79
VK SP +LP+ S K +P+ + S + R KK D F GVR+ +LGPK
Sbjct: 16 VKTSPAGYLPD--PASINKLQIPTSSKFSFLTGKGKSMLRKKKNDSFTNGVRDQDKLGPK 73
Query: 80 ITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFIST 139
+TE VK KLSLGARI+Q+GG+ K++K+LF V++ E+L K QCYLSTTAGPIAGLLFIS+
Sbjct: 74 LTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISS 133
Query: 140 EKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFD 199
+KIAFCSERSIK+ SP GE R+HYKV IP+ KI VNQS+N KPSQKY+E+VTVD FD
Sbjct: 134 KKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFD 193
Query: 200 FWFMGFLNYQKALNHLQQAIS 220
FWFMGFL+YQKA N L+QA+S
Sbjct: 194 FWFMGFLSYQKAFNCLEQALS 214
>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2
Length = 218
Score = 233 bits (593), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 118/205 (57%), Positives = 149/205 (72%), Gaps = 10/205 (4%)
Query: 22 VKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLK-----RIKKADRFATGVREHVRL 76
K M +LP+ P QI S SK +Y K R KK D F G R+ +L
Sbjct: 16 AKTDTMSYLPD-PASINNHQIPTS----SKVSYLTGKGKSMLRKKKTDSFTNGARDQDKL 70
Query: 77 GPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLF 136
GPK+TE VK KLSLGA+I+Q+GG+ K++K+LF V + E+L K QCYLSTTAGPIAGLLF
Sbjct: 71 GPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLF 130
Query: 137 ISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVD 196
IS++KIAFCSERSIK+ SP G +R+HYKV IP+ KI VNQS+N KPSQKY+EIVT+D
Sbjct: 131 ISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTID 190
Query: 197 NFDFWFMGFLNYQKALNHLQQAISS 221
NFDFWFMGF++YQKA N L++A+++
Sbjct: 191 NFDFWFMGFVSYQKAFNCLEKALNN 215
>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1
Length = 210
Score = 227 bits (578), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 106/183 (57%), Positives = 140/183 (76%), Gaps = 5/183 (2%)
Query: 43 VPSPANGSKNAYPLLKRI-----KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQV 97
+P PA+ +K P ++ KK D F G R+ +LGPK+TE VK KLSLGA+I+Q+
Sbjct: 24 LPDPASINKLQIPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQM 83
Query: 98 GGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNG 157
GG+ K++K+LF V + E+L K QCYLSTT G IAGLLFIS++KIAFCSERSIK+ SP G
Sbjct: 84 GGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQG 143
Query: 158 ESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQ 217
+ R+HYKV IP+ KI VNQS+N KPSQ+Y+E+VTVDN+DFWFMGF++YQKA N L++
Sbjct: 144 DLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEK 203
Query: 218 AIS 220
A++
Sbjct: 204 ALN 206
>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1
Length = 272
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 104/161 (64%)
Query: 61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
+KA+ A + +++ GP ++E GK++L A+ I GG +F+++F E L KT
Sbjct: 102 RKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTF 161
Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSE 180
CYLSTT GP+AG +++S ++AFCS+R + +P+G+ + +Y+VV+P+ + VN
Sbjct: 162 ACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVV 221
Query: 181 NVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS 221
P +KYI++ TVD DFWFMGF+NY+KA +HL ++S
Sbjct: 222 VKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSD 262
>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1
Length = 233
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Query: 61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
+KA+ G+++H++ P I++ +LS G ++I GG +VF++ F V E+LL +
Sbjct: 65 RKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSF 124
Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIP-SPNGESARIHYKVVIPVKKIKRVNQS 179
CY+STT+GP+ G+++IS +IAFCS+ +I++P S G +YKVV+ +KI ++ S
Sbjct: 125 VCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSS 184
Query: 180 ENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAI 219
NV KPS++Y+ +VT D F+FWFMGF++Y A N L +A+
Sbjct: 185 TNVLKPSERYVHMVTRDGFEFWFMGFVSYIDAFNCLNKAL 224
>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1
SV=1
Length = 299
Score = 144 bits (363), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 102/160 (63%), Gaps = 3/160 (1%)
Query: 61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
KK + A +H+R P + G+++ ++ GG K+F++ F E+LL +
Sbjct: 134 KKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSF 193
Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARI-HYKVVIPVKKIKRVNQS 179
CYLST+AGP+ G+L+IS+ K+A+CS+ + NG+ +YKVVIP+ ++K VN S
Sbjct: 194 ACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY--KNGDQTEWSYYKVVIPLHQLKAVNPS 251
Query: 180 ENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAI 219
++ P++KYI++++VDN +FWFMGFLNY A+ LQ ++
Sbjct: 252 ASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291
>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1
Length = 259
Score = 143 bits (360), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 104/163 (63%), Gaps = 3/163 (1%)
Query: 60 IKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKT 119
KKA+ A +H++ GP + + +++ G +I+ GG KVFK+ F+ E+LLKT
Sbjct: 96 TKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKT 155
Query: 120 CQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARI-HYKVVIPVKKIKRVNQ 178
CYLST+AGP+ G++++ST K+AF S+ + GE +YKVV+P ++K VN
Sbjct: 156 YACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY--KEGEQTLWSYYKVVLPANQLKAVNP 213
Query: 179 SENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAISS 221
S + S KYI+++++DN +FWFMGF+ Y+ A+ LQ+A+ S
Sbjct: 214 STSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAVQS 256
>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100
PE=3 SV=2
Length = 239
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 87/136 (63%), Gaps = 15/136 (11%)
Query: 86 GKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFC 145
G+++ +++ GG K+F++ F E+L + CYLST+AGP+ G+L++ST K+A+C
Sbjct: 112 GRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYC 171
Query: 146 SERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGF 205
S+ S+ VVIP+ ++K VN S + P++KYI++++VD+ +FWFMGF
Sbjct: 172 SDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGF 216
Query: 206 LNYQKALNHLQQAISS 221
LNY+ A+ LQ + +
Sbjct: 217 LNYEGAVTSLQDTLQA 232
>sp|Q1DLP2|MYO1_COCIM Myosin-1 OS=Coccidioides immitis (strain RS) GN=MYO1 PE=3 SV=1
Length = 1251
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 59 RIKKADRFATGVREHVRLGPKITEIVKGKLS------LGAR--------IIQVGGMGKVF 104
RI++ R TG E ++L + +I+ G+ +G+R I G MG V
Sbjct: 754 RIQRFWRRVTGGLEFIKLRDQGHKILGGRKERRRYSLVGSRRFLGDYLGISNAGDMGDVI 813
Query: 105 KKLFNVAEGERLLKTCQCYLSTT 127
K N++ GE +L +C+C L T
Sbjct: 814 KSSINISSGENILYSCRCELLVT 836
>sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis
thaliana GN=At5g50170 PE=2 SV=1
Length = 1027
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 104 FKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCS 146
F+KLF + E LLK CYL P+ G LF+S +AF S
Sbjct: 694 FQKLFGLPHEEFLLKEYTCYLKRKL-PVQGKLFLSARIVAFYS 735
>sp|Q8CJT1|RPOC_STRCO DNA-directed RNA polymerase subunit beta' OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=rpoC PE=3 SV=1
Length = 1299
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 16/78 (20%)
Query: 40 KQIVPSPANGS-KNAYPLLKRIKKADRFATGVREHVRLGPKIT-------EIVKGKLSLG 91
K+IV +P +GS + A+P+ KR R G +HV +G K+T ++++ LG
Sbjct: 1057 KKIVVTPDDGSDETAFPISKRA----RLLVGEGDHVEVGQKLTVGATNPHDVLR---ILG 1109
Query: 92 ARIIQVGGMGKVFKKLFN 109
R +QV +G+V +K++N
Sbjct: 1110 QRAVQVHLVGEV-QKVYN 1126
>sp|A4VJ40|COBQ_PSEU5 Cobyric acid synthase OS=Pseudomonas stutzeri (strain A1501)
GN=cobQ PE=3 SV=1
Length = 485
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 25 SPMRFLPEVPDE-SGGKQIVPSPA----NGSKNAYPLLKRIKKADRFATGVREHVRLGPK 79
P+R P+V + G Q VPS GSK+ L ++ A+ + +++H+R G K
Sbjct: 266 DPLRLHPQVDLQFVGPGQPVPSADLIILPGSKSVRADLAWLR-ANGWEAAIQKHLRYGGK 324
Query: 80 ITEIVKGKLSLGARIIQVGGM--------GKVFKKLFNVAEGERLLKTCQCYLSTTAGPI 131
+ I G LG RI G+ G V E ++ L+ Q L A P+
Sbjct: 325 LLGICGGLQMLGTRIADPLGLEGPAGESAGLGLLDFATVLEADKQLRNVQGRLLPEAVPV 384
Query: 132 AG 133
G
Sbjct: 385 TG 386
>sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2
Length = 1134
Score = 31.2 bits (69), Expect = 6.1, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 104 FKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIH 163
F+ FN E E+L+ C P G L++S + F S K
Sbjct: 147 FEARFNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGK-----------E 195
Query: 164 YKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQ 217
K+VIP I+++ ++ NV+ I T N + F FLN + ++Q
Sbjct: 196 LKLVIPWVDIQKLERTSNVFLTDTIRI---TTQNKERDFSTFLNLDEVFKIMEQ 246
>sp|A1TSK3|IF2_ACIAC Translation initiation factor IF-2 OS=Acidovorax citrulli (strain
AAC00-1) GN=infB PE=3 SV=1
Length = 943
Score = 30.4 bits (67), Expect = 9.1, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 22 VKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGPKIT 81
+K SP L ++ +G + PS A + LL ++ + ATG R + L K T
Sbjct: 13 LKKSPETLLDQL-KSAGVSKAAPSDALTESDKQKLLAFLQASHGTATGDRRKITLTKKST 71
Query: 82 EIVKGKLSLG-ARIIQVGGMGK-VFKKLFNVAEGE 114
+K + G AR IQV K F K +V EGE
Sbjct: 72 SEIKQADATGKARTIQVEVRKKRTFIKRDDVVEGE 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,584,590
Number of Sequences: 539616
Number of extensions: 3295736
Number of successful extensions: 7407
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7391
Number of HSP's gapped (non-prelim): 19
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)