Query 027631
Match_columns 221
No_of_seqs 111 out of 140
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 12:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02893 GRAM: GRAM domain; I 99.4 5.2E-13 1.1E-17 94.4 4.1 66 103-178 2-67 (69)
2 smart00568 GRAM domain in gluc 99.2 1.9E-11 4.2E-16 84.6 5.2 59 110-179 2-60 (61)
3 PF14470 bPH_3: Bacterial PH d 96.7 0.03 6.6E-07 40.6 9.8 94 111-220 2-95 (96)
4 KOG4347 GTPase-activating prot 85.7 0.85 1.8E-05 46.6 3.8 95 106-215 14-110 (671)
5 PF14844 PH_BEACH: PH domain a 81.8 3.2 6.9E-05 31.4 4.7 86 115-202 1-90 (106)
6 PF00169 PH: PH domain; Inter 76.3 9.4 0.0002 26.3 5.4 63 141-204 20-86 (104)
7 PF08498 Sterol_MT_C: Sterol m 75.6 1.2 2.5E-05 33.3 0.6 54 54-107 5-58 (67)
8 KOG3473 RNA polymerase II tran 65.5 3.7 7.9E-05 33.6 1.5 21 182-202 11-31 (112)
9 KOG4471 Phosphatidylinositol 3 64.0 6.8 0.00015 40.4 3.3 63 105-180 31-93 (717)
10 smart00233 PH Pleckstrin homol 60.6 39 0.00085 22.4 5.7 60 137-205 25-85 (102)
11 smart00683 DM16 Repeats in sea 58.8 16 0.00034 26.5 3.5 37 128-177 17-53 (55)
12 PF07289 DUF1448: Protein of u 58.6 13 0.00028 35.5 4.0 65 107-184 148-214 (339)
13 PF08567 TFIIH_BTF_p62_N: TFII 56.1 61 0.0013 24.4 6.5 54 131-197 12-67 (79)
14 KOG1032 Uncharacterized conser 55.2 18 0.00039 36.5 4.5 90 110-213 117-206 (590)
15 KOG2415 Electron transfer flav 54.0 7.1 0.00015 39.3 1.5 51 72-125 345-397 (621)
16 PF07719 TPR_2: Tetratricopept 53.8 12 0.00027 21.7 2.0 14 207-220 16-29 (34)
17 PF00515 TPR_1: Tetratricopept 53.5 12 0.00027 22.1 2.0 14 207-220 16-29 (34)
18 cd00900 PH-like Pleckstrin hom 48.4 79 0.0017 21.0 5.7 65 129-205 18-84 (99)
19 PF13181 TPR_8: Tetratricopept 48.0 17 0.00038 21.3 2.0 14 207-220 16-29 (34)
20 PF11605 Vps36_ESCRT-II: Vacuo 47.9 34 0.00073 26.4 4.1 47 131-188 36-82 (89)
21 PF10882 bPH_5: Bacterial PH d 43.2 23 0.0005 26.3 2.5 28 160-188 13-40 (100)
22 cd00821 PH Pleckstrin homology 43.0 94 0.002 20.3 5.8 59 135-203 21-79 (96)
23 PF12068 DUF3548: Domain of un 42.4 41 0.0009 29.9 4.3 39 160-200 108-146 (213)
24 PF09890 DUF2117: Uncharacteri 41.9 17 0.00037 32.7 1.9 64 58-134 48-114 (215)
25 PF13176 TPR_7: Tetratricopept 40.5 25 0.00053 21.8 2.0 13 207-219 14-26 (36)
26 PF03931 Skp1_POZ: Skp1 family 39.5 20 0.00044 25.1 1.6 14 188-201 1-14 (62)
27 smart00028 TPR Tetratricopepti 38.3 30 0.00065 17.6 1.9 14 207-220 16-29 (34)
28 TIGR02681 phage_pRha phage reg 35.2 40 0.00086 26.8 2.8 30 192-221 68-106 (108)
29 cd00851 MTH1175 This uncharact 35.1 84 0.0018 22.8 4.4 38 165-206 2-40 (103)
30 cd01244 PH_RasGAP_CG9209 RAS_G 34.5 49 0.0011 25.7 3.2 33 164-197 43-76 (98)
31 PRK13708 plasmid maintenance p 32.8 58 0.0013 26.1 3.4 35 164-203 30-64 (101)
32 PF01845 CcdB: CcdB protein; 32.5 59 0.0013 25.8 3.4 36 163-203 30-65 (102)
33 PF08238 Sel1: Sel1 repeat; I 30.2 47 0.001 19.9 2.0 14 207-220 23-36 (39)
34 cd00562 NifX_NifB This CD repr 29.8 97 0.0021 22.3 3.9 39 165-207 1-39 (102)
35 cd00852 NifB NifB belongs to a 27.1 1.2E+02 0.0026 22.8 4.1 40 165-208 1-40 (106)
36 cd08544 Reeler Reeler, the N-t 25.6 1.3E+02 0.0029 23.5 4.3 34 162-206 19-52 (135)
37 smart00671 SEL1 Sel1-like repe 23.6 77 0.0017 18.5 2.1 16 206-221 19-34 (36)
38 PF10756 bPH_6: Bacterial PH d 23.1 77 0.0017 22.6 2.3 37 164-205 18-54 (73)
39 PF13414 TPR_11: TPR repeat; P 23.0 67 0.0014 21.3 1.9 14 207-220 18-31 (69)
40 PF13424 TPR_12: Tetratricopep 22.9 69 0.0015 21.9 2.0 14 207-220 20-33 (78)
41 PF14472 DUF4429: Domain of un 22.4 1.1E+02 0.0024 23.3 3.3 29 166-198 27-58 (94)
42 KOG3294 WW domain binding prot 22.0 66 0.0014 29.9 2.2 21 129-149 45-65 (261)
43 PF04397 LytTR: LytTr DNA-bind 20.8 1.5E+02 0.0032 21.4 3.4 40 166-219 4-43 (98)
44 PF13374 TPR_10: Tetratricopep 20.7 91 0.002 18.4 2.0 14 207-220 17-30 (42)
45 PF08909 DUF1854: Domain of un 20.5 70 0.0015 26.8 1.9 34 186-219 17-52 (133)
No 1
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.36 E-value=5.2e-13 Score=94.42 Aligned_cols=66 Identities=33% Similarity=0.601 Sum_probs=46.1
Q ss_pred eeeeccccCcCceeeeccceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceecc
Q 027631 103 VFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQ 178 (221)
Q Consensus 103 vFkq~F~~~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnp 178 (221)
-|++.|...++|+|...+.|+|..+.+|+.|.||||+.+++|+|+.+..-. ++++|||..|..|..
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k 67 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK 67 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence 489999999999999999999999999999999999999999998665443 799999999999864
No 2
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.21 E-value=1.9e-11 Score=84.55 Aligned_cols=59 Identities=41% Similarity=0.730 Sum_probs=51.4
Q ss_pred cCcCceeeeccceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccC
Q 027631 110 VAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQS 179 (221)
Q Consensus 110 ~~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps 179 (221)
..++|+|...|.|+|+ +.+|+.|.||||+.+++|+|+.+-... .+++|||+.|.+|+..
T Consensus 2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEKS 60 (61)
T ss_pred cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEEC
Confidence 4689999999999999 779999999999999999997655432 2999999999998753
No 3
>PF14470 bPH_3: Bacterial PH domain
Probab=96.69 E-value=0.03 Score=40.64 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=67.8
Q ss_pred CcCceeeeccceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCceE
Q 027631 111 AEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYI 190 (221)
Q Consensus 111 ~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYI 190 (221)
.+||+.+-...|.+-...+.-.|+|+++++||-||+-..+. . .....||+++|.+|+-.... -...|
T Consensus 2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~------~----~~~~~i~y~~I~~v~~~~g~---~~~~i 68 (96)
T PF14470_consen 2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG------G----KKFESIPYDDITSVSFKKGI---LGGKI 68 (96)
T ss_pred cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC------C----ceEEEEEhhheEEEEEEccc---cccEE
Confidence 58999999999988877889999999999999999873221 1 13689999999999997444 34669
Q ss_pred EEEEecCceeeeeecccHHHHHHHHHHHhh
Q 027631 191 EIVTVDNFDFWFMGFLNYQKALNHLQQAIS 220 (221)
Q Consensus 191 qIvTvD~~eFWFMGFvnY~KA~k~Lq~Ai~ 220 (221)
.|.| ++..+ =++-+ -..-++-+-+.|+
T Consensus 69 ~i~~-~~~~~-~i~~i-~k~~~~~~~~~i~ 95 (96)
T PF14470_consen 69 TIET-NGEKI-KIDNI-QKGDVKEFYEYIK 95 (96)
T ss_pred EEEE-CCEEE-EEEEc-CHHHHHHHHHHHh
Confidence 9888 44444 44544 3333455555544
No 4
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=85.69 E-value=0.85 Score=46.62 Aligned_cols=95 Identities=24% Similarity=0.346 Sum_probs=73.8
Q ss_pred eccccCcCceeeeccceeeecCCC--cceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCC
Q 027631 106 KLFNVAEGERLLKTCQCYLSTTAG--PIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVY 183 (221)
Q Consensus 106 q~F~~~~~EkLlKa~~CYLSTtaG--PVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~ 183 (221)
-.|... |+|--.-.|=|.|..- -..|-||+||..++|.||-+=.. .+++||.-|+.|.-.. ..
T Consensus 14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~c------------~~~~Pl~~vr~ve~~~-~s 78 (671)
T KOG4347|consen 14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWLC------------SFITPLLAVRSVERLD-DS 78 (671)
T ss_pred ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcccc------------eEeeehhhhhhhhccC-cc
Confidence 456665 9999999999999876 58999999999999999976543 7899999999998755 22
Q ss_pred CCCCceEEEEEecCceeeeeecccHHHHHHHH
Q 027631 184 KPSQKYIEIVTVDNFDFWFMGFLNYQKALNHL 215 (221)
Q Consensus 184 ~P~eKYIqIvTvD~~eFWFMGFvnY~KA~k~L 215 (221)
+--..=|-+.|-.+-.|-|-|...=++.+.-+
T Consensus 79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~ 110 (671)
T KOG4347|consen 79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKL 110 (671)
T ss_pred ccchhhhHHhhcCcceEEecchhhHHHHHHHH
Confidence 22223366778889999999988766666544
No 5
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=81.83 E-value=3.2 Score=31.40 Aligned_cols=86 Identities=23% Similarity=0.352 Sum_probs=53.8
Q ss_pred eeeeccceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCC----ceeeeEEEEEeccccceeccCCCCCCCCCceE
Q 027631 115 RLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGE----SARIHYKVVIPVKKIKRVNQSENVYKPSQKYI 190 (221)
Q Consensus 115 kLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~----~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYI 190 (221)
|++-++.|-+=|..+-+.|+|.|++..+.|..|..-........ ....+--..+|+.+|+.|-..--..+ +-=|
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr--~~Al 78 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLR--DTAL 78 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTE--EEEE
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCc--ceEE
Confidence 34567889999999999999999999999999811111000000 01112234589999999987443332 3448
Q ss_pred EEEEecCceeee
Q 027631 191 EIVTVDNFDFWF 202 (221)
Q Consensus 191 qIvTvD~~eFWF 202 (221)
||.+.||.-+.|
T Consensus 79 EiF~~dg~s~f~ 90 (106)
T PF14844_consen 79 EIFFSDGRSYFF 90 (106)
T ss_dssp EEEETTS-EEEE
T ss_pred EEEEcCCcEEEE
Confidence 999999988754
No 6
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=76.28 E-value=9.4 Score=26.31 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=43.0
Q ss_pred eeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCC----CCCCCceEEEEEecCceeeeee
Q 027631 141 KIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENV----YKPSQKYIEIVTVDNFDFWFMG 204 (221)
Q Consensus 141 kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~----~~P~eKYIqIvTvD~~eFWFMG 204 (221)
|.++-.+.-|.+..++.+.....++-+|||..+ .|.+..+. ..+.+..++|.+.++-.|+|..
T Consensus 20 r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 86 (104)
T PF00169_consen 20 RYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSA 86 (104)
T ss_dssp EEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEE
T ss_pred EEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEc
Confidence 344444444444444443445567889999999 77776666 3678888999998887888764
No 7
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=75.58 E-value=1.2 Score=33.32 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=48.9
Q ss_pred chhhhhccchhhhhhhhhhhcccCCChHHHHhhhhcccceehhccCcceeeeec
Q 027631 54 YPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKL 107 (221)
Q Consensus 54 ~~~~k~~rKae~~a~~i~~hlk~gp~iset~~GKlslGakil~~GG~ekvFkq~ 107 (221)
++|+.++|..-...=.+.|-+++.|+=+-.+.--|..+|.-|.+||-++||--.
T Consensus 5 ~r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM 58 (67)
T PF08498_consen 5 FRMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM 58 (67)
T ss_pred EeccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence 378899998888888899999999999999999999999999999999999643
No 8
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=65.50 E-value=3.7 Score=33.64 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=18.4
Q ss_pred CCCCCCceEEEEEecCceeee
Q 027631 182 VYKPSQKYIEIVTVDNFDFWF 202 (221)
Q Consensus 182 ~~~P~eKYIqIvTvD~~eFWF 202 (221)
-+-|+++|+.+|+-|||||-.
T Consensus 11 ~egp~~~yVkLvS~Ddhefii 31 (112)
T KOG3473|consen 11 CEGPDSMYVKLVSSDDHEFII 31 (112)
T ss_pred ccCcchhheEeecCCCcEEEE
Confidence 456899999999999999964
No 9
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.99 E-value=6.8 Score=40.40 Aligned_cols=63 Identities=22% Similarity=0.421 Sum_probs=47.0
Q ss_pred eeccccCcCceeeeccceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCC
Q 027631 105 KKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSE 180 (221)
Q Consensus 105 kq~F~~~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~ 180 (221)
.--|...|||.+..-- |..-=.||+.|+|.||+-|+=|-|.-. +.+|-+-|||.-|.+|+--.
T Consensus 31 ~~~~~~L~GE~i~~~~--y~c~f~G~~~g~l~lsNyRl~fks~~t-----------~~~~~~~VPLg~Ie~vek~~ 93 (717)
T KOG4471|consen 31 QVPFPLLPGESIIDEK--YICPFLGAVDGTLALSNYRLYFKSKET-----------DPPFVLDVPLGVIERVEKRG 93 (717)
T ss_pred cCcccccCCcccccce--ecccccccccceEEeeeeEEEEEeccC-----------CCceeEeechhhhhhhhhcC
Confidence 4567888999884322 444456899999999999999987532 22578889999888887644
No 10
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=60.61 E-value=39 Score=22.41 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=36.8
Q ss_pred eeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCC-CCCCceEEEEEecCceeeeeec
Q 027631 137 ISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVY-KPSQKYIEIVTVDNFDFWFMGF 205 (221)
Q Consensus 137 iSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~-~P~eKYIqIvTvD~~eFWFMGF 205 (221)
+.+..+.++++.+-.. .....-.|||..+ .|....+.. .+..-.+.|.+-++..++|..-
T Consensus 25 L~~~~l~~~~~~~~~~--------~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~ 85 (102)
T smart00233 25 LFNSTLLYYKSEKAKK--------DYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLLQAE 85 (102)
T ss_pred EECCEEEEEeCCCccc--------cCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEEEcC
Confidence 3445555555554321 1446778999999 555444432 3556778888877778888753
No 11
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=58.77 E-value=16 Score=26.50 Aligned_cols=37 Identities=16% Similarity=0.456 Sum_probs=29.4
Q ss_pred CCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceec
Q 027631 128 AGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVN 177 (221)
Q Consensus 128 aGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vn 177 (221)
.| --|+|++++-|+...|+..-. +.|.||.-+|..++
T Consensus 17 ~G-~~G~l~VTNlRiiW~s~~~~~------------~NlSIgy~~i~~i~ 53 (55)
T smart00683 17 NG-DLGVFFVTNLRLVWHSDTNPR------------FNISVGYLQITNVR 53 (55)
T ss_pred CC-CeeEEEEEeeEEEEEeCCCCc------------eEEEEcceeEEEEE
Confidence 45 459999999999999986533 57889988887764
No 12
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=58.63 E-value=13 Score=35.54 Aligned_cols=65 Identities=17% Similarity=0.355 Sum_probs=52.6
Q ss_pred ccccCcCceeeecc--ceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCC
Q 027631 107 LFNVAEGERLLKTC--QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYK 184 (221)
Q Consensus 107 ~F~~~~~EkLlKa~--~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~ 184 (221)
.+-..|+|++.... .+=||+--|=+ |+++|++-||..|+|-.-.| .|.||.=+|+++.-.+.+--
T Consensus 148 ~L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~ne~f------------NVSiPylqi~~i~ir~SKfG 214 (339)
T PF07289_consen 148 QLKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMNESF------------NVSIPYLQIKSIRIRDSKFG 214 (339)
T ss_pred eEeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCCccc------------cccchHhhheeeeeeccccc
Confidence 35578888887765 47788888887 99999999999999876554 79999999999987666543
No 13
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=56.09 E-value=61 Score=24.38 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=35.5
Q ss_pred ceeeEEeeece--eeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCceEEEEEecC
Q 027631 131 IAGLLFISTEK--IAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDN 197 (221)
Q Consensus 131 VaG~LfiSt~k--vAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~ 197 (221)
+.|+|+|+.++ +...-+. .++.. .|.||+..|+.-..+- +..+.==++|+-.|+
T Consensus 12 ~~G~L~l~~d~~~~~W~~~~------~~~~~-----~v~i~~~~I~~lq~Sp--~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 12 KDGTLTLTEDRKPLEWTPKA------SDGPS-----TVSIPLNDIKNLQQSP--EGSPKVMLKIVLKDD 67 (79)
T ss_dssp EEEEEEEETTCSSEEEEECC------SSSSS-----EEEEETTTEEEEEE----TTSSTEEEEEEETTS
T ss_pred CCcEEEEecCCceEEEeecC------CCCCc-----eEEEEHHHhhhhccCC--CCCcceEEEEEEecC
Confidence 35999999888 7765441 11111 6999999999866543 334455678887766
No 14
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=55.20 E-value=18 Score=36.55 Aligned_cols=90 Identities=28% Similarity=0.349 Sum_probs=63.5
Q ss_pred cCcCceeeeccceeeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCce
Q 027631 110 VAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKY 189 (221)
Q Consensus 110 ~~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKY 189 (221)
+.++|+|+..+.|+|.-.- +.=|=+|||...|+|-|.- ..|. -|||||++.|..+.......- ..-=
T Consensus 117 ~~~~~~l~~~~~cal~rei-llQGrmyis~~~icF~s~i----------~gw~-~~~vIpf~eI~~ikk~~tag~-fpn~ 183 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREI-LLQGRMYISEEHICFNSNI----------FGWE-TKVVIPFDEITLIKKTKTAGI-FPNA 183 (590)
T ss_pred CCCcceeeeecchhhcccc-ccccccccccceeeecccc----------cCcc-ceeEEeeeeeeeeehhhhccC-CCcc
Confidence 7799999999999998553 4568999999999997652 2222 499999998887776543221 1123
Q ss_pred EEEEEecCceeeeeecccHHHHHH
Q 027631 190 IEIVTVDNFDFWFMGFLNYQKALN 213 (221)
Q Consensus 190 IqIvTvD~~eFWFMGFvnY~KA~k 213 (221)
|+|-|+..-. =|.+|++=|-+++
T Consensus 184 i~i~t~~~ky-~f~s~~Srda~~~ 206 (590)
T KOG1032|consen 184 IEITTGTTKY-IFVSLLSRDATYK 206 (590)
T ss_pred eEEecCCCcc-eeeecccCccHHH
Confidence 5555444444 4688988888877
No 15
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=54.00 E-value=7.1 Score=39.35 Aligned_cols=51 Identities=25% Similarity=0.604 Sum_probs=40.5
Q ss_pred hhcccCCChHHHHhh--hhcccceehhccCcceeeeeccccCcCceeeeccceeee
Q 027631 72 EHVRLGPKITEIVKG--KLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLS 125 (221)
Q Consensus 72 ~hlk~gp~iset~~G--KlslGakil~~GG~ekvFkq~F~~~~~EkLlKa~~CYLS 125 (221)
+.+|.-|+++....| +|..|||.|-|||+..|=|-.| ||--|.-.++-+|-
T Consensus 345 Qk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~F---PGG~liGcSaGFlN 397 (621)
T KOG2415|consen 345 QKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVF---PGGALIGCSAGFLN 397 (621)
T ss_pred HHhhcCcchhhhhcCcceeeehhhhhccCCcccCccccc---CCceEeeccccccc
Confidence 456667999999987 7999999999999999876655 67777766666653
No 16
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=53.77 E-value=12 Score=21.68 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHhh
Q 027631 207 NYQKALNHLQQAIS 220 (221)
Q Consensus 207 nY~KA~k~Lq~Ai~ 220 (221)
+|++|.+++++|++
T Consensus 16 ~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 16 NYEEAIEYFEKALE 29 (34)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 68999999999985
No 17
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=53.50 E-value=12 Score=22.08 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=12.0
Q ss_pred cHHHHHHHHHHHhh
Q 027631 207 NYQKALNHLQQAIS 220 (221)
Q Consensus 207 nY~KA~k~Lq~Ai~ 220 (221)
+|++|++++++||.
T Consensus 16 ~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 16 DYEEALEYYQRALE 29 (34)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 68999999999985
No 18
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=48.39 E-value=79 Score=20.95 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=41.0
Q ss_pred CcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCceEEEEEec--Cceeeeeec
Q 027631 129 GPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVD--NFDFWFMGF 205 (221)
Q Consensus 129 GPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD--~~eFWFMGF 205 (221)
..-...++|+...+-++++.+-..... -++||..+. |....... -...-++|++.+ +..++|.--
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~----------~~~~l~~~~-v~~~~~~~-~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKP----------GSIPLSEIS-VEEDPDGS-DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCC----------CEEEccceE-EEECCCCC-CCCceEEEECCCCCcEEEEEEcC
Confidence 444455667777777777766443211 578999888 76654432 234678888886 777777543
No 19
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=48.00 E-value=17 Score=21.26 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHhh
Q 027631 207 NYQKALNHLQQAIS 220 (221)
Q Consensus 207 nY~KA~k~Lq~Ai~ 220 (221)
+|++|++++++|++
T Consensus 16 ~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 16 DYEEALEYFEKALE 29 (34)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 68999999999985
No 20
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=47.92 E-value=34 Score=26.41 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=31.5
Q ss_pred ceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCc
Q 027631 131 IAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQK 188 (221)
Q Consensus 131 VaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eK 188 (221)
-.|.||++|.||.+--|....- .-+.|||+.|..+.-....-+.+-|
T Consensus 36 q~G~l~LTsHRliw~d~~~~~~-----------~s~~l~L~~i~~~e~~~gf~~sSpK 82 (89)
T PF11605_consen 36 QNGRLYLTSHRLIWVDDSDPSK-----------HSIALPLSLISHIEYSAGFLKSSPK 82 (89)
T ss_dssp SCEEEEEESSEEEEEESSGHCH-----------H-EEEEGGGEEEEEEE-STTSSS-E
T ss_pred cCCEEEEEeeEEEEEcCCCCce-----------eEEEEEchHeEEEEEEccccCCCCe
Confidence 4799999999999975543211 2488999999888655554444444
No 21
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=43.18 E-value=23 Score=26.27 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=22.1
Q ss_pred eeeeEEEEEeccccceeccCCCCCCCCCc
Q 027631 160 ARIHYKVVIPVKKIKRVNQSENVYKPSQK 188 (221)
Q Consensus 160 ~~~~YKVvIPL~kik~Vnps~n~~~P~eK 188 (221)
.|..+++.||+++|..|....+.. +.-|
T Consensus 13 ~~~~~~~~Ip~~~I~~v~~~~~~~-~~~R 40 (100)
T PF10882_consen 13 RWPFGKITIPLAEIESVELVDDLP-PGIR 40 (100)
T ss_pred EEccccEEEEHHHcEEEEeccccC-cceE
Confidence 467789999999999999877665 4433
No 22
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=43.04 E-value=94 Score=20.34 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=34.9
Q ss_pred EEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCceEEEEEecCceeeee
Q 027631 135 LFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFM 203 (221)
Q Consensus 135 LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFM 203 (221)
+++....+.+|++.+-.. ....+-+|||.. ..|....+.. ..+..++|++.++..+.|.
T Consensus 21 ~~L~~~~l~~~~~~~~~~--------~~~~~~~i~l~~-~~v~~~~~~~-~~~~~f~i~~~~~~~~~~~ 79 (96)
T cd00821 21 FVLFNDLLLYYKKKSSKK--------SYKPKGSIPLSG-AEVEESPDDS-GRKNCFEIRTPDGRSYLLQ 79 (96)
T ss_pred EEEECCEEEEEECCCCCc--------CCCCcceEEcCC-CEEEECCCcC-CCCcEEEEecCCCcEEEEE
Confidence 344455666665544321 223466788888 4444433322 4578899988888888876
No 23
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=42.42 E-value=41 Score=29.90 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=31.3
Q ss_pred eeeeEEEEEeccccceeccCCCCCCCCCceEEEEEecCcee
Q 027631 160 ARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDF 200 (221)
Q Consensus 160 ~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eF 200 (221)
.+..|.+.|||..|+++.-+.... .-.||.++|-||.-|
T Consensus 108 ~~~~~aFsv~lsdl~Si~~~~p~~--G~~~lv~~~kdG~~~ 146 (213)
T PF12068_consen 108 SRSSYAFSVPLSDLKSIRVSKPSL--GWWYLVFILKDGTSL 146 (213)
T ss_pred CCcceEEEEEhhheeeEEecCCCC--CceEEEEEecCCCcc
Confidence 467889999999999998843322 668999999999654
No 24
>PF09890 DUF2117: Uncharacterized protein conserved in archaea (DUF2117); InterPro: IPR012032 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.86 E-value=17 Score=32.74 Aligned_cols=64 Identities=31% Similarity=0.455 Sum_probs=43.6
Q ss_pred hhccch---hhhhhhhhhhcccCCChHHHHhhhhcccceehhccCcceeeeeccccCcCceeeeccceeeecCCCcceee
Q 027631 58 KRIKKA---DRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGL 134 (221)
Q Consensus 58 k~~rKa---e~~a~~i~~hlk~gp~iset~~GKlslGakil~~GG~ekvFkq~F~~~~~EkLlKa~~CYLSTtaGPVaG~ 134 (221)
-|.+++ +.+|..+.+||.+- |++-+.--++.+...- +|+ .++||...++.|||.+. =.|-|.|.
T Consensus 48 ~Wn~~~~~~~~~a~~Ls~~l~l~--i~~p~~~~i~~~~~~~-~~~-~~v~R~i~Gv~pGE~I~---------VNGiVIG~ 114 (215)
T PF09890_consen 48 PWNKKAEEVEPIAEKLSELLGLK--IVRPVENPISSGENCW-EGK-GRVFRKISGVSPGENIF---------VNGIVIGR 114 (215)
T ss_pred eccccccchHHHHHHHHHHhCCC--ccCcccccccCccccc-cCC-ceEEEEEeccCCCCCEE---------EeeEEEEE
Confidence 355666 99999999998875 2221333334443332 333 78999999999999875 36777776
No 25
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=40.55 E-value=25 Score=21.80 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=11.0
Q ss_pred cHHHHHHHHHHHh
Q 027631 207 NYQKALNHLQQAI 219 (221)
Q Consensus 207 nY~KA~k~Lq~Ai 219 (221)
+|++|..++++||
T Consensus 14 ~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 14 DYEKAIEYYEQAL 26 (36)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6999999999976
No 26
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=39.50 E-value=20 Score=25.12 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=11.8
Q ss_pred ceEEEEEecCceee
Q 027631 188 KYIEIVTVDNFDFW 201 (221)
Q Consensus 188 KYIqIvTvD~~eFW 201 (221)
+||.++|-||++|=
T Consensus 1 ~~v~L~SsDg~~f~ 14 (62)
T PF03931_consen 1 MYVKLVSSDGQEFE 14 (62)
T ss_dssp -EEEEEETTSEEEE
T ss_pred CEEEEEcCCCCEEE
Confidence 58999999999983
No 27
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=38.31 E-value=30 Score=17.59 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.6
Q ss_pred cHHHHHHHHHHHhh
Q 027631 207 NYQKALNHLQQAIS 220 (221)
Q Consensus 207 nY~KA~k~Lq~Ai~ 220 (221)
+|++|..++++++.
T Consensus 16 ~~~~a~~~~~~~~~ 29 (34)
T smart00028 16 DYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHc
Confidence 57889999998874
No 28
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=35.19 E-value=40 Score=26.79 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=25.6
Q ss_pred EEEecCceeeeeec---------ccHHHHHHHHHHHhhC
Q 027631 192 IVTVDNFDFWFMGF---------LNYQKALNHLQQAISS 221 (221)
Q Consensus 192 IvTvD~~eFWFMGF---------vnY~KA~k~Lq~Ai~~ 221 (221)
.+|-||+.+--||| ..|-++|+-+++.|++
T Consensus 68 ~ltkdgf~lLvmg~tg~ka~~fK~~yI~~Fn~ME~~l~~ 106 (108)
T TIGR02681 68 NLTEDGFTIVAMGYTTPKAMKMKEKFIKEFNEMKEHLQK 106 (108)
T ss_pred EEcCCceEEEEecCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35999999999999 4688899999998863
No 29
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=35.13 E-value=84 Score=22.79 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=21.8
Q ss_pred EEEEeccccc-eeccCCCCCCCCCceEEEEEecCceeeeeecc
Q 027631 165 KVVIPVKKIK-RVNQSENVYKPSQKYIEIVTVDNFDFWFMGFL 206 (221)
Q Consensus 165 KVvIPL~kik-~Vnps~n~~~P~eKYIqIvTvD~~eFWFMGFv 206 (221)
||.||.+.-+ .|+++-.. -+|+.|+.+|+....+...+
T Consensus 2 ~IAv~~~~~~~~v~~hFg~----a~~f~i~d~~~~~~~~~~~~ 40 (103)
T cd00851 2 KIAIPVSGNGGKVSPHFGR----APYFLIYDVETGKIKNVEVI 40 (103)
T ss_pred EEEEEecCCCccccCcccc----CCEEEEEEccCCcEeEEEEe
Confidence 5666666655 45554332 25666777776665555544
No 30
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=34.49 E-value=49 Score=25.66 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=24.0
Q ss_pred EEEEEeccccceeccCCCCCCCCCce-EEEEEecC
Q 027631 164 YKVVIPVKKIKRVNQSENVYKPSQKY-IEIVTVDN 197 (221)
Q Consensus 164 YKVvIPL~kik~Vnps~n~~~P~eKY-IqIvTvD~ 197 (221)
-+=.|||..+++|....+.... .+| +||||-|.
T Consensus 43 ~~g~I~L~~i~~ve~v~~~~~~-~~~~fqivt~~r 76 (98)
T cd01244 43 KSALIKLAAIKGTEPLSDKSFV-NVDIITIVCEDD 76 (98)
T ss_pred eeeeEEccceEEEEEcCCcccC-CCceEEEEeCCC
Confidence 3668999999999876654322 245 89999775
No 31
>PRK13708 plasmid maintenance protein CcdB; Provisional
Probab=32.81 E-value=58 Score=26.10 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=25.1
Q ss_pred EEEEEeccccceeccCCCCCCCCCceEEEEEecCceeeee
Q 027631 164 YKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFM 203 (221)
Q Consensus 164 YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFM 203 (221)
-+|||||-......+.. ..+--=++++||.+|-.|
T Consensus 30 tRvViPL~~~~~~~~~~-----~~rL~P~~~I~g~~~vl~ 64 (101)
T PRK13708 30 RRMVIPLASARLLSDKV-----SRELYPVVHIGDESYRLM 64 (101)
T ss_pred ceEEEeCccHHHCCCCc-----CCCcCceEEECCeEEEEE
Confidence 48999999888776643 133334788999998754
No 32
>PF01845 CcdB: CcdB protein; InterPro: IPR002712 CcdB protein is a topoisomerase poison from Escherichia coli []. It is responsible for killing plasmid-free segregants, and interferes with the activity of DNA gyrase. It acts to inhibit partitioning of the chromosomal DNA.; GO: 0008657 DNA topoisomerase (ATP-hydrolyzing) inhibitor activity, 0006276 plasmid maintenance; PDB: 2VUB_G 1VUB_D 3VUB_A 1X75_C 3HPW_B 4VUB_A 4ELZ_D 2KMT_B 4ELY_C 3JRZ_A ....
Probab=32.51 E-value=59 Score=25.77 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=24.1
Q ss_pred eEEEEEeccccceeccCCCCCCCCCceEEEEEecCceeeee
Q 027631 163 HYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFM 203 (221)
Q Consensus 163 ~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFM 203 (221)
...|||||-......+ ++..+--=++++||.+|-.|
T Consensus 30 ~tRvVvPL~~~~~~~~-----~~~~~L~P~~~i~g~~~vl~ 65 (102)
T PF01845_consen 30 NTRVVVPLLPLSNLPG-----KPPRRLNPVFEIEGEDYVLM 65 (102)
T ss_dssp SEEEEEEEEEGGGTSS-----TS-TTTS-EEEETTEEEEE-
T ss_pred CcEEEEecCchhhcCc-----ccCCceeeEEEECCEEEEEE
Confidence 4689999998877751 23344444789999998654
No 33
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=30.16 E-value=47 Score=19.86 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHhh
Q 027631 207 NYQKALNHLQQAIS 220 (221)
Q Consensus 207 nY~KA~k~Lq~Ai~ 220 (221)
++++|+++|++|..
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 68999999999865
No 34
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=29.83 E-value=97 Score=22.34 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=23.4
Q ss_pred EEEEeccccceeccCCCCCCCCCceEEEEEecCceeeeeeccc
Q 027631 165 KVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLN 207 (221)
Q Consensus 165 KVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvn 207 (221)
||.||...-+.|+++--. -+|+.|+.+|+.++++...+.
T Consensus 1 kIAi~~~~~~~v~~hFg~----A~~f~I~d~~~~~~~~~e~~~ 39 (102)
T cd00562 1 KIAVASSDGGRVDQHFGR----APEFLIYEVEPGGIKLVEVRE 39 (102)
T ss_pred CEEEEcCCCCEehhhcCC----CCeEEEEEEcCCcEEEEEEEe
Confidence 456666665556654433 357777777777666655543
No 35
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=27.11 E-value=1.2e+02 Score=22.80 Aligned_cols=40 Identities=23% Similarity=0.113 Sum_probs=22.4
Q ss_pred EEEEeccccceeccCCCCCCCCCceEEEEEecCceeeeeecccH
Q 027631 165 KVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNY 208 (221)
Q Consensus 165 KVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvnY 208 (221)
||.||...-..|+++--+- +|.-|+.+|+.+++|+.....
T Consensus 1 kIAv~s~~~~~V~~HFG~a----~~F~Iydv~~~~~~~ve~~~~ 40 (106)
T cd00852 1 LVAVASKGGGRVNQHFGHA----TEFQIYEVSGSGVKFVEHRKV 40 (106)
T ss_pred CEEEECCCCCEehhhccCC----CEEEEEEEcCCcEEEEEEeec
Confidence 3445544444555544333 566677777777777665543
No 36
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=25.58 E-value=1.3e+02 Score=23.54 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=24.7
Q ss_pred eeEEEEEeccccceeccCCCCCCCCCceEEEEEecCceeeeeecc
Q 027631 162 IHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFL 206 (221)
Q Consensus 162 ~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFMGFv 206 (221)
.+|.|.++-. ...|.|.|---++..+- -.|.||+
T Consensus 19 ~py~i~~~~~----------~y~pG~~~~Vtl~~~~~-~~F~GF~ 52 (135)
T cd08544 19 SPYSITISGN----------SYVPGETYTVTLSGSSP-SPFRGFL 52 (135)
T ss_pred CCEEEEeCCC----------EECCCCEEEEEEECCCC-CceeEEE
Confidence 7899988765 46688888655555444 6899997
No 37
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=23.64 E-value=77 Score=18.47 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.1
Q ss_pred ccHHHHHHHHHHHhhC
Q 027631 206 LNYQKALNHLQQAISS 221 (221)
Q Consensus 206 vnY~KA~k~Lq~Ai~~ 221 (221)
.++++|++++++|..+
T Consensus 19 ~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 19 KDLEKALEYYKKAAEL 34 (36)
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4789999999998753
No 38
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=23.14 E-value=77 Score=22.61 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=31.2
Q ss_pred EEEEEeccccceeccCCCCCCCCCceEEEEEecCceeeeeec
Q 027631 164 YKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGF 205 (221)
Q Consensus 164 YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFMGF 205 (221)
-...||.++|..|.- ....+|+.+.+.|+..++||+.
T Consensus 18 rt~~vpW~~I~~v~~-----~~~~~~v~~~~~dg~~~~l~~~ 54 (73)
T PF10756_consen 18 RTRRVPWSEIAGVRF-----RRGRRWVRLDLRDGRLVPLPAV 54 (73)
T ss_pred eeEEEChHHeEEEEc-----cCCceEEEEECCCCCEEEEeeE
Confidence 456799999999983 4667779999999999999985
No 39
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=23.02 E-value=67 Score=21.34 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHHhh
Q 027631 207 NYQKALNHLQQAIS 220 (221)
Q Consensus 207 nY~KA~k~Lq~Ai~ 220 (221)
+|++|++++++||.
T Consensus 18 ~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 18 DYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 46777777777663
No 40
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=22.92 E-value=69 Score=21.86 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=11.6
Q ss_pred cHHHHHHHHHHHhh
Q 027631 207 NYQKALNHLQQAIS 220 (221)
Q Consensus 207 nY~KA~k~Lq~Ai~ 220 (221)
.|++|+.++++|+.
T Consensus 20 ~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 20 RYDEALDYYEKALD 33 (78)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 68999999999984
No 41
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=22.42 E-value=1.1e+02 Score=23.27 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=21.9
Q ss_pred EEEeccccceeccCCCCCCCC---CceEEEEEecCc
Q 027631 166 VVIPVKKIKRVNQSENVYKPS---QKYIEIVTVDNF 198 (221)
Q Consensus 166 VvIPL~kik~Vnps~n~~~P~---eKYIqIvTvD~~ 198 (221)
..|||..|..|.= +.|. .=||+++..++-
T Consensus 27 ~~ipl~~i~gV~~----~~pg~~~~G~Lrf~~~~g~ 58 (94)
T PF14472_consen 27 KTIPLSAISGVEW----KPPGGLTNGYLRFVLRGGA 58 (94)
T ss_pred EEEEHHHcceEEE----EcCCceeEEEEEEEECCcC
Confidence 5799999999986 4354 348999987743
No 42
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=22.03 E-value=66 Score=29.93 Aligned_cols=21 Identities=29% Similarity=0.668 Sum_probs=17.8
Q ss_pred CcceeeEEeeeceeeeecCCc
Q 027631 129 GPIAGLLFISTEKIAFCSERS 149 (221)
Q Consensus 129 GPVaG~LfiSt~kvAFcSdrp 149 (221)
|=--|+||+++.||-|-|+-+
T Consensus 45 g~kkGtlyLTs~RiIFis~~~ 65 (261)
T KOG3294|consen 45 GTKKGTLYLTSHRIIFISSKP 65 (261)
T ss_pred cceeeeEEeecceEEEecCCC
Confidence 344699999999999999875
No 43
>PF04397 LytTR: LytTr DNA-binding domain; InterPro: IPR007492 The LytTr domain is a DNA-binding, potential winged helix-turn-helix domain (~100 residues) present in a variety of bacterial transcriptional regulators of the algR/agrA/lytR family. It is named after the lytR response regulators involved in the regulation of cell autolysis. The LytTr domain binds to a specific DNA sequence pattern in the upstream regions of target genes []. The N-terminal of the protein contains a response regulator receiver domain (IPR001789 from INTERPRO).; PDB: 3BS1_A 3D6W_B.
Probab=20.80 E-value=1.5e+02 Score=21.37 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=27.0
Q ss_pred EEEeccccceeccCCCCCCCCCceEEEEEecCceeeeeecccHHHHHHHHHHHh
Q 027631 166 VVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLNYQKALNHLQQAI 219 (221)
Q Consensus 166 VvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvnY~KA~k~Lq~Ai 219 (221)
+.||+++|-.+. ...+|+.|.|. +.+|.. ...++.+++.+
T Consensus 4 ~~i~~~~I~yi~-------~~~~~~~i~~~-~~~~~~------~~tl~~~~~~l 43 (98)
T PF04397_consen 4 IRIPLDDILYIE-------SEGHYVRIHTK-NGSYEI------RGTLKELEEQL 43 (98)
T ss_dssp EEEEGGGEEEEE-------CCTTEEEEEES-S-EEEE------CS-HHHHHHHS
T ss_pred EEEeHHHeEEEE-------EECCEEEEEEC-CcEEEE------eCCHHHHhhhh
Confidence 578999999993 36789999999 555544 34555555543
No 44
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=20.69 E-value=91 Score=18.36 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=11.2
Q ss_pred cHHHHHHHHHHHhh
Q 027631 207 NYQKALNHLQQAIS 220 (221)
Q Consensus 207 nY~KA~k~Lq~Ai~ 220 (221)
.|++|.+++++|+.
T Consensus 17 ~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 17 RYEEALELLEEALE 30 (42)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHH
Confidence 68999999999874
No 45
>PF08909 DUF1854: Domain of unknown function (DUF1854); InterPro: IPR015005 These protein is functionally uncharacterised. It is found at the C terminus of a number of ATP transporter proteins suggesting it may be involved in ligand binding.
Probab=20.53 E-value=70 Score=26.82 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCceEEEEEecCce-eeeeecccHHH-HHHHHHHHh
Q 027631 186 SQKYIEIVTVDNFD-FWFMGFLNYQK-ALNHLQQAI 219 (221)
Q Consensus 186 ~eKYIqIvTvD~~e-FWFMGFvnY~K-A~k~Lq~Ai 219 (221)
.+.||-+++.||+| +|.=-.=--+. +.+.++++|
T Consensus 17 P~~~isl~~~~G~El~~I~~l~~L~~~~r~lle~eL 52 (133)
T PF08909_consen 17 PDEGISLVDEDGHELAWIDDLDDLPEESRALLEEEL 52 (133)
T ss_pred CCccEEEEcCCCcEEEEEcChhHCCHHHHHHHHHHH
Confidence 46899999999999 88754433322 233444444
Done!