Query 027631
Match_columns 221
No_of_seqs 111 out of 140
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 21:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 92.3 0.6 2E-05 44.8 9.5 87 108-206 7-97 (528)
2 1lw3_A Myotubularin-related pr 90.8 1 3.5E-05 44.4 9.5 87 108-206 79-169 (657)
3 2hth_B Vacuolar protein sortin 78.2 2.4 8.2E-05 33.7 4.4 51 128-190 35-85 (140)
4 2yf0_A Myotubularin-related pr 69.4 16 0.00055 34.9 8.3 67 124-207 18-84 (512)
5 2cay_A VPS36 PH domain, vacuol 61.2 6.5 0.00022 31.5 3.4 48 128-186 48-95 (145)
6 2d9z_A Protein kinase C, NU ty 42.8 17 0.00059 29.2 3.1 41 159-201 43-87 (129)
7 4ag4_A Epithelial discoidin do 42.8 20 0.00068 32.5 3.9 59 114-172 250-315 (351)
8 1vcb_B Protein (elongin C); tu 41.8 9.8 0.00034 28.9 1.4 20 183-202 12-31 (112)
9 2coa_A Protein kinase C, D2 ty 37.4 26 0.0009 28.0 3.3 41 159-201 43-87 (125)
10 1hv2_A Elongin C, ELC1; protei 36.7 17 0.00057 26.8 2.0 17 186-202 2-18 (99)
11 2fnj_C Transcription elongatio 33.3 16 0.00056 26.6 1.4 15 188-202 1-15 (96)
12 1zyi_A Methylosome subunit pic 29.9 36 0.0012 28.2 3.1 29 120-149 32-60 (171)
13 4ajy_C Transcription elongatio 28.9 21 0.00073 25.7 1.4 13 189-201 3-15 (97)
14 2aze_B Transcription factor E2 24.7 26 0.00091 26.7 1.3 15 118-132 85-99 (106)
15 3tfm_A Myosin X; split PH doma 23.0 3E+02 0.01 22.2 7.6 94 96-203 29-136 (228)
16 1pfj_A TFIIH basal transcripti 22.3 2.2E+02 0.0075 22.0 6.1 60 133-207 22-81 (108)
17 2kq8_A Cell WALL hydrolase; GF 21.9 13 0.00043 25.5 -0.9 22 73-94 13-34 (70)
18 2zou_A Spondin-1; beta-sandwic 20.7 1.1E+02 0.0039 23.9 4.3 53 143-206 5-57 (149)
19 2adz_A Alpha-1-syntrophin; pro 20.5 92 0.0031 26.0 3.9 36 165-201 120-155 (178)
20 3s6n_M SurviVal motor neuron p 20.3 57 0.0019 21.3 2.0 13 208-220 18-30 (37)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=92.32 E-value=0.6 Score=44.80 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=55.8
Q ss_pred cccCcCceeeeccce--eeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCC
Q 027631 108 FNVAEGERLLKTCQC--YLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKP 185 (221)
Q Consensus 108 F~~~~~EkLlKa~~C--YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P 185 (221)
|...|||.++..-.- |+..-.|++.|+|||++.|+.|.++.. +. .+.+-|||..|..|.........
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~--------~~---~~~~~iPL~~I~~vek~~~~s~~ 75 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFVLDASLGVINRVEKIGGASSR 75 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC--------Cc---cEEEEeeccceEEEEEcCCCCcC
Confidence 567899999855211 555557999999999999999998521 11 24678999888777653221111
Q ss_pred C--CceEEEEEecCceeeeeecc
Q 027631 186 S--QKYIEIVTVDNFDFWFMGFL 206 (221)
Q Consensus 186 ~--eKYIqIvTvD~~eFWFMGFv 206 (221)
. --.|+|..-|- ..+=.+|-
T Consensus 76 ~~~~~~l~I~CKDf-r~~~f~f~ 97 (528)
T 1zsq_A 76 GENSYGLETVCKDI-RNLRFAHK 97 (528)
T ss_dssp STTCSEEEEEETTT-EEEEEECC
T ss_pred CCCCceEEEEccCC-eEEEEEec
Confidence 1 12477776664 44444454
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=90.76 E-value=1 Score=44.45 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=55.9
Q ss_pred cccCcCceeeeccc-e-eeecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCC
Q 027631 108 FNVAEGERLLKTCQ-C-YLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKP 185 (221)
Q Consensus 108 F~~~~~EkLlKa~~-C-YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P 185 (221)
|...|||.+...-. . |+..-.|++.|+|||++.|+.|.+... +. .+.+-|||..|..|.........
T Consensus 79 ~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~--------~~---~~~~~IPL~~I~~Iekv~g~s~~ 147 (657)
T 1lw3_A 79 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFVLDASLGVINRVEKIGGASSR 147 (657)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred CccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC--------Cc---ceEEEecccceEEEEecCCCccc
Confidence 77899999995421 1 444446899999999999999998521 11 24678999888888753321111
Q ss_pred CC--ceEEEEEecCceeeeeecc
Q 027631 186 SQ--KYIEIVTVDNFDFWFMGFL 206 (221)
Q Consensus 186 ~e--KYIqIvTvD~~eFWFMGFv 206 (221)
.+ -.|+|..-|- ..+=.+|-
T Consensus 148 g~~~~~l~I~CKDf-R~~~f~f~ 169 (657)
T 1lw3_A 148 GENSYGLETVCKDI-RNLRFAHK 169 (657)
T ss_dssp STTCSEEEEEETTT-EEEEEECC
T ss_pred CCCCceEEEEecCC-cEEEEEeC
Confidence 11 2476666654 44444554
No 3
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=78.23 E-value=2.4 Score=33.69 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=36.9
Q ss_pred CCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCceE
Q 027631 128 AGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYI 190 (221)
Q Consensus 128 aGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYI 190 (221)
+.--.|.||++|.||.|-.+.. ++ .-+.|||..|+.+...+..-..+-|++
T Consensus 35 ~~~k~G~l~LTshRli~~d~~~-----~~-------~s~~lpl~~v~~~e~~~~~f~~s~Ki~ 85 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWRDQKN-----HE-------CCMAILLSQIVFIEEQAAGIGKSAKIV 85 (140)
T ss_dssp SCCCCEEEEEESSEEEEEETTC-----CS-------CCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred CCCcCCEEEEecCEEEEecCCC-----Cc-------eEEEEEhHHeeeeeeeccccccCceEE
Confidence 4568899999999999965432 11 347888888888887776665555654
No 4
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=69.38 E-value=16 Score=34.93 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=40.1
Q ss_pred eecCCCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCceEEEEEecCceeeee
Q 027631 124 LSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFM 203 (221)
Q Consensus 124 LSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFM 203 (221)
++.+.+|+.|+|+|++.|+.|.+|.. + .+.||+..|.+|.-.... ....-|+|..-|-.-+=|
T Consensus 18 ~~~~~~~~~GtL~lTn~~LiF~~~~~--------~------e~wi~~~~I~~VeK~~~~--~~~~~l~I~CKDfr~~~f- 80 (512)
T 2yf0_A 18 FSTSNKSLTGTLYLTATHLLFIDSHQ--------K------ETWILHHHIASVEKLALT--TSGCPLVIQCKNFRTVHF- 80 (512)
T ss_dssp ------CCEEEEEECSSEEEEEESSS--------C------EEEEEGGGEEEEEECCCB--TTBEEEEEEETTSCEEEE-
T ss_pred cCCCCCceeEEEEEECCEEEEeCCCC--------C------ceEecccceeEEEEecCC--CCCceEEEEecCCcEEEE-
Confidence 34567999999999999999999532 2 345788887777542211 122457777777655444
Q ss_pred eccc
Q 027631 204 GFLN 207 (221)
Q Consensus 204 GFvn 207 (221)
.|-.
T Consensus 81 ~f~~ 84 (512)
T 2yf0_A 81 IVPR 84 (512)
T ss_dssp EESC
T ss_pred EeCC
Confidence 3544
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=61.22 E-value=6.5 Score=31.53 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=34.1
Q ss_pred CCcceeeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCC
Q 027631 128 AGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPS 186 (221)
Q Consensus 128 aGPVaG~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~ 186 (221)
.+--.|.|||+|.||-|-.+.+-. -.-+.|||..|+.+...+..-.++
T Consensus 48 ~~~k~G~lyLTshRIIyv~~~~~~-----------~~SfslPL~~v~~~e~~~~~fg~s 95 (145)
T 2cay_A 48 LQRQRGRIFLTSQRIIYIDDAKPT-----------QNSLGLELDDLAYVNYSSGFLTRS 95 (145)
T ss_dssp TTCSSEEEEEESSEEEEEESSCHH-----------HHCEEEEGGGEEEEEEECSSSSSS
T ss_pred cCCCccEEEEEcCeEEEecCCCCc-----------ceEEEeEhHheeeeeEEcCccccC
Confidence 567899999999999997543211 024678888888887766665554
No 6
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.81 E-value=17 Score=29.24 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=30.2
Q ss_pred ceeeeEEEEEeccccceeccCCCCCC--CCC--ceEEEEEecCceee
Q 027631 159 SARIHYKVVIPVKKIKRVNQSENVYK--PSQ--KYIEIVTVDNFDFW 201 (221)
Q Consensus 159 ~~~~~YKVvIPL~kik~Vnps~n~~~--P~e--KYIqIvTvD~~eFW 201 (221)
...-|||. |||.+|-.|.|..+-.. +.. -..||+| ++-.|.
T Consensus 43 ~~~k~yke-IpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~y~ 87 (129)
T 2d9z_A 43 SGSKYYKE-IPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMVYF 87 (129)
T ss_dssp SCCSCCCE-ECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCEEE
T ss_pred CCCceece-eeHHHhcccccccCccccCCCCCCceEEEEE-CCEEEE
Confidence 44557887 99999999999876653 222 6799998 666664
No 7
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=42.76 E-value=20 Score=32.50 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=45.9
Q ss_pred ceeeeccceeeecCCCcceeeEEeeeceeeeecC-------CcccccCCCCCceeeeEEEEEeccc
Q 027631 114 ERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSE-------RSIKIPSPNGESARIHYKVVIPVKK 172 (221)
Q Consensus 114 EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSd-------rpl~~~sp~G~~~~~~YKVvIPL~k 172 (221)
+++++-.+|.|-+..=.--|+-.-|..++=|++| .|+.|+.+.-...++-.-|.|||++
T Consensus 250 d~~RnFt~~~ih~~n~~~~~v~~f~~~~~~Fs~~~~~~~~~~p~~~~~~~d~~~~~ar~v~i~l~~ 315 (351)
T 4ag4_A 250 DRLRAFQAMQVHCNNMHTLGARLPGGVECRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVSVPLGG 315 (351)
T ss_dssp EEEEEEEEEEEEECCCGGGTBCCCSEEEEEEECSSSSSCSSSCEEEECSSCCSCCSCEEEEEEEEE
T ss_pred CcEEEEEEEEEEecccccccceeeeEEEEEEECCCCccccCCceEeecCCCcCCCccceEEEeCCC
Confidence 5678999999999888888888888899999988 3888875433334445679999973
No 8
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=41.76 E-value=9.8 Score=28.87 Aligned_cols=20 Identities=20% Similarity=0.571 Sum_probs=13.9
Q ss_pred CCCCCceEEEEEecCceeee
Q 027631 183 YKPSQKYIEIVTVDNFDFWF 202 (221)
Q Consensus 183 ~~P~eKYIqIvTvD~~eFWF 202 (221)
+-|..+||.++|-||++|--
T Consensus 12 ~~~~~~~v~L~SsDG~~F~V 31 (112)
T 1vcb_B 12 EGPDAMYVKLISSDGHEFIV 31 (112)
T ss_dssp -----CEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCEEEE
Confidence 34667999999999999964
No 9
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=37.41 E-value=26 Score=27.95 Aligned_cols=41 Identities=32% Similarity=0.511 Sum_probs=29.8
Q ss_pred ceeeeEEEEEeccccceeccCCCCCC--CC--CceEEEEEecCceee
Q 027631 159 SARIHYKVVIPVKKIKRVNQSENVYK--PS--QKYIEIVTVDNFDFW 201 (221)
Q Consensus 159 ~~~~~YKVvIPL~kik~Vnps~n~~~--P~--eKYIqIvTvD~~eFW 201 (221)
...-|||. |||.+|-.|.+..+... +. .-..||+| .+-.|.
T Consensus 43 ~~~~~yke-IpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~~yy 87 (125)
T 2coa_A 43 TTNRYYKE-IPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANATYF 87 (125)
T ss_dssp SCSSCSEE-EETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSCCCC
T ss_pred CCCceeee-eehhHeecccccccccccCCCCCCceEEEEe-CCeEEE
Confidence 34557887 99999999999876553 22 26799999 566654
No 10
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=36.68 E-value=17 Score=26.75 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.6
Q ss_pred CCceEEEEEecCceeee
Q 027631 186 SQKYIEIVTVDNFDFWF 202 (221)
Q Consensus 186 ~eKYIqIvTvD~~eFWF 202 (221)
+.+||.++|-||++|--
T Consensus 2 ~~~~v~L~SsDg~~f~V 18 (99)
T 1hv2_A 2 SQDFVTLVSKDDKEYEI 18 (99)
T ss_dssp CCSEEEEEETTTEEEEE
T ss_pred CCcEEEEEecCCCEEEE
Confidence 35899999999999963
No 11
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=33.27 E-value=16 Score=26.57 Aligned_cols=15 Identities=20% Similarity=0.669 Sum_probs=13.5
Q ss_pred ceEEEEEecCceeee
Q 027631 188 KYIEIVTVDNFDFWF 202 (221)
Q Consensus 188 KYIqIvTvD~~eFWF 202 (221)
+||.++|-||++|--
T Consensus 1 ~~v~L~SsDg~~f~V 15 (96)
T 2fnj_C 1 MYVKLISSDGHEFIV 15 (96)
T ss_dssp CEEEEECTTSCEEEE
T ss_pred CeEEEEecCCCEEEe
Confidence 699999999999964
No 12
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=29.88 E-value=36 Score=28.18 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=22.1
Q ss_pred cceeeecCCCcceeeEEeeeceeeeecCCc
Q 027631 120 CQCYLSTTAGPIAGLLFISTEKIAFCSERS 149 (221)
Q Consensus 120 ~~CYLSTtaGPVaG~LfiSt~kvAFcSdrp 149 (221)
-+++|-.. .+-.|+|||++.||.+-|+..
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~~ 60 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGSG 60 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETTT
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCCC
Confidence 46777553 334699999999999998753
No 13
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=28.85 E-value=21 Score=25.66 Aligned_cols=13 Identities=23% Similarity=0.805 Sum_probs=12.0
Q ss_pred eEEEEEecCceee
Q 027631 189 YIEIVTVDNFDFW 201 (221)
Q Consensus 189 YIqIvTvD~~eFW 201 (221)
||.++|.||++|-
T Consensus 3 ~v~L~SsDg~~F~ 15 (97)
T 4ajy_C 3 YVKLISSDGHEFI 15 (97)
T ss_dssp EEEEECTTCCEEE
T ss_pred EEEEEecCCcEEE
Confidence 8999999999984
No 14
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=24.70 E-value=26 Score=26.73 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=13.5
Q ss_pred eccceeeecCCCcce
Q 027631 118 KTCQCYLSTTAGPIA 132 (221)
Q Consensus 118 Ka~~CYLSTtaGPVa 132 (221)
+.|++||.++.|||-
T Consensus 85 ~~yqi~LkS~~GPId 99 (106)
T 2aze_B 85 ENFQISLKSKQGPID 99 (106)
T ss_dssp SCEEEEEECSSSCCE
T ss_pred cceEEEEECCCCCEE
Confidence 589999999999984
No 15
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=23.05 E-value=3e+02 Score=22.23 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=56.1
Q ss_pred hccCcceeeeeccccCcCceeeeccceeeecCCCc--ceeeEEeeece------------eeeecCCcccccCCCCCcee
Q 027631 96 QVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGP--IAGLLFISTEK------------IAFCSERSIKIPSPNGESAR 161 (221)
Q Consensus 96 ~~GG~ekvFkq~F~~~~~EkLlKa~~CYLSTtaGP--VaG~LfiSt~k------------vAFcSdrpl~~~sp~G~~~~ 161 (221)
..||+-|-+|.-+-+ +|.-.+.+..+.++ ..|-|+.-..+ .....|..|.|.....+
T Consensus 29 ~~~~~~~~w~~rw~v------l~~~~~~~~~~~~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~--- 99 (228)
T 3tfm_A 29 MNGGLMNSWKRRWCV------LKDETFLWFRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSE--- 99 (228)
T ss_dssp ECCTTTCCCEEEEEE------EETTEEEEESSCCCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTC---
T ss_pred ecCcccccceEEEEE------EeCCEEEEeccCCCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCC---
Confidence 358888889665555 33333333333333 35777776543 35556778877644333
Q ss_pred eeEEEEEeccccceeccCCCCCCCCCceEEEEEecCceeeee
Q 027631 162 IHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFM 203 (221)
Q Consensus 162 ~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFM 203 (221)
..-+=+|||..+..|.+..+. +--++|+| ++..|.|.
T Consensus 100 ~~~~g~I~L~~~~~v~~~~~k----~~~F~I~t-~~r~~~l~ 136 (228)
T 3tfm_A 100 EKLKGTVEVRSAKEIIDNTNK----ENGIDIIM-ADRTFHLI 136 (228)
T ss_dssp CSEEEEEEGGGCSEEEEETTT----TSEEEEEC-SSCEEEEE
T ss_pred cceeEEEEcCCCEEeccCCCC----CcEEEEEc-CCcEEEEE
Confidence 234668999999887764432 23577876 55666664
No 16
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=22.29 E-value=2.2e+02 Score=22.03 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=40.2
Q ss_pred eeEEeeeceeeeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCceEEEEEecCceeeeeeccc
Q 027631 133 GLLFISTEKIAFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFLN 207 (221)
Q Consensus 133 G~LfiSt~kvAFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvn 207 (221)
|+||++..+|+...+.. +. --|.++..+|+.-..|- ..-+.==+||+-.|+-.+=|- |.|
T Consensus 22 GtL~l~~d~i~W~p~~~-------~~-----~~vs~~~~~I~~qq~SP--~~k~KVqLqi~l~~~~~~~F~-Ftn 81 (108)
T 1pfj_A 22 GALYLMAERIAWAPEGK-------DR-----FTISHMYADIKCQKISP--EGKAKIQLQLVLHAGDTTNFH-FSN 81 (108)
T ss_dssp CEEEEETTEEEEECSSS-------SS-----CSEEEETTTCCCEEECC--SSSSSCEEEEECSSSCEEEEE-CCC
T ss_pred ceEEEEcceEEEccCCC-------CC-----ceEEEehhhhhcceeCC--CCCccEEEEEEEeCCCceEEE-EcC
Confidence 99999999999876433 11 24677899998754432 334555678888776665553 555
No 17
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=21.92 E-value=13 Score=25.47 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred hcccCCChHHHHhhhhccccee
Q 027631 73 HVRLGPKITEIVKGKLSLGARI 94 (221)
Q Consensus 73 hlk~gp~iset~~GKlslGaki 94 (221)
+||.||+..-.+.|+|..|+++
T Consensus 13 nvRsgP~~~~~ii~~l~~G~~v 34 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGALPQGQKV 34 (70)
T ss_dssp CSSSSSSSCTTSCCCCCSSSSC
T ss_pred EEEcCCCCCCceEEEECCCCEE
Confidence 7999999999999999999875
No 18
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=20.69 E-value=1.1e+02 Score=23.86 Aligned_cols=53 Identities=17% Similarity=0.439 Sum_probs=27.1
Q ss_pred eeecCCcccccCCCCCceeeeEEEEEeccccceeccCCCCCCCCCceEEEEEecCceeeeeecc
Q 027631 143 AFCSERSIKIPSPNGESARIHYKVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFWFMGFL 206 (221)
Q Consensus 143 AFcSdrpl~~~sp~G~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFMGFv 206 (221)
+-| ||-..... .-+..-.+|+|.|.= +.+...|.+.|---+.-..- =.|+||+
T Consensus 5 ~aC-~~~p~~~~-~~~~~~~py~i~i~~--------~~~~y~pG~~~~VtL~~~~~-~~F~GFl 57 (149)
T 2zou_A 5 GYC-SRILRAQG-TRREGYTEFSLRVEG--------DPDFYKPGTSYRVTLSAAPP-SYFRGFT 57 (149)
T ss_dssp -CC-TTC--------CCSCCSEEEEETT--------CCSSBCTTCEEEEEEEECTT-CCBSEEE
T ss_pred hhh-cCCCCCCC-CCCCCCCCEEEEEec--------CCceEcCCCcEEEEEeccCC-CceEEEE
Confidence 457 66554443 224445689888752 23556799998433332211 2589997
No 19
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=20.53 E-value=92 Score=25.97 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=26.8
Q ss_pred EEEEeccccceeccCCCCCCCCCceEEEEEecCceee
Q 027631 165 KVVIPVKKIKRVNQSENVYKPSQKYIEIVTVDNFDFW 201 (221)
Q Consensus 165 KVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFW 201 (221)
.+.|||. +-.|...-...+|..+++||.+.||-.-=
T Consensus 120 ~~~IPLk-MayvtR~~~~tD~e~r~fEv~s~DG~~t~ 155 (178)
T 2adz_A 120 AKHVSLK-MAYVSRRCTPTDPEPRYLEICAADGQDAV 155 (178)
T ss_dssp CEEEETT-TCEEEEECCSSCCSSCEEEEEETTTTEEE
T ss_pred ceeecHH-HHHHHHhccCCCCCccEEEEEcCCCCeeE
Confidence 4779975 44555555556779999999999998753
No 20
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=20.33 E-value=57 Score=21.31 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhh
Q 027631 208 YQKALNHLQQAIS 220 (221)
Q Consensus 208 Y~KA~k~Lq~Ai~ 220 (221)
||||+..++.||.
T Consensus 18 yDKAVaSfk~alk 30 (37)
T 3s6n_M 18 YDKAVASFKHALK 30 (37)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
Done!