Query 027632
Match_columns 221
No_of_seqs 197 out of 1362
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 12:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 4.5E-48 9.7E-53 343.6 13.0 176 26-220 15-190 (275)
2 COG0740 ClpP Protease subunit 100.0 3.3E-39 7.1E-44 278.6 11.2 111 110-220 15-125 (200)
3 CHL00028 clpP ATP-dependent Cl 100.0 1.2E-38 2.5E-43 274.1 13.1 127 83-220 2-128 (200)
4 PRK14513 ATP-dependent Clp pro 100.0 6.6E-38 1.4E-42 270.2 12.5 111 110-220 15-125 (201)
5 PRK12552 ATP-dependent Clp pro 100.0 8E-38 1.7E-42 273.6 13.0 127 83-220 2-147 (222)
6 PRK14514 ATP-dependent Clp pro 100.0 8E-38 1.7E-42 273.2 12.1 111 110-220 42-152 (221)
7 PRK12551 ATP-dependent Clp pro 100.0 8.2E-37 1.8E-41 262.1 12.3 110 111-220 14-123 (196)
8 TIGR00493 clpP ATP-dependent C 100.0 1.5E-33 3.3E-38 239.8 12.6 111 110-220 14-124 (191)
9 PRK00277 clpP ATP-dependent Cl 100.0 2.1E-32 4.6E-37 234.0 14.0 128 83-220 2-129 (200)
10 PF00574 CLP_protease: Clp pro 100.0 4.7E-33 1E-37 231.0 9.6 111 110-220 4-114 (182)
11 PRK14512 ATP-dependent Clp pro 100.0 3.4E-32 7.4E-37 233.1 12.7 107 114-220 15-121 (197)
12 PRK12553 ATP-dependent Clp pro 100.0 2.6E-31 5.6E-36 228.6 10.7 109 112-220 25-133 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 6.4E-31 1.4E-35 218.5 10.2 107 114-220 1-107 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 2E-28 4.3E-33 202.8 11.4 98 123-220 1-98 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 99.8 5.8E-21 1.3E-25 155.7 10.8 92 124-220 2-96 (160)
16 cd00394 Clp_protease_like Case 99.8 9.4E-19 2E-23 141.8 10.4 95 124-220 1-95 (161)
17 cd07015 Clp_protease_NfeD Nodu 99.8 2.1E-18 4.6E-23 145.8 11.2 94 124-220 3-99 (172)
18 cd07020 Clp_protease_NfeD_1 No 99.7 6.9E-18 1.5E-22 142.0 10.5 94 124-220 3-99 (187)
19 cd07021 Clp_protease_NfeD_like 99.6 3.8E-15 8.1E-20 126.1 10.6 94 124-220 3-96 (178)
20 COG0616 SppA Periplasmic serin 99.4 2.5E-13 5.4E-18 123.8 9.0 91 124-216 63-162 (317)
21 TIGR00706 SppA_dom signal pept 99.3 8.5E-12 1.8E-16 106.6 10.3 91 124-217 4-96 (207)
22 cd07023 S49_Sppa_N_C Signal pe 99.3 9.9E-12 2.1E-16 105.7 9.6 93 123-217 3-101 (208)
23 TIGR00705 SppA_67K signal pept 99.2 5.3E-11 1.1E-15 116.6 9.6 90 124-215 312-411 (584)
24 cd07022 S49_Sppa_36K_type Sign 99.2 1.7E-10 3.7E-15 98.9 10.3 84 134-219 25-110 (214)
25 cd07014 S49_SppA Signal peptid 99.1 5E-10 1.1E-14 93.1 9.6 84 135-220 23-109 (177)
26 PRK11778 putative inner membra 99.0 9.3E-10 2E-14 101.9 9.8 95 124-220 94-192 (330)
27 cd07019 S49_SppA_1 Signal pept 99.0 1.4E-09 3E-14 93.3 10.1 93 124-218 4-106 (211)
28 PRK10949 protease 4; Provision 99.0 8.4E-10 1.8E-14 109.2 9.1 92 124-217 330-431 (618)
29 PF01972 SDH_sah: Serine dehyd 98.9 1.3E-08 2.7E-13 92.7 9.5 82 129-215 70-151 (285)
30 cd07018 S49_SppA_67K_type Sign 98.8 1.5E-08 3.3E-13 87.5 7.9 89 129-220 24-115 (222)
31 COG1030 NfeD Membrane-bound se 98.4 9.8E-07 2.1E-11 84.6 8.1 90 123-215 29-121 (436)
32 TIGR00705 SppA_67K signal pept 97.6 0.00018 3.9E-09 71.1 8.1 84 134-220 76-163 (584)
33 PRK10949 protease 4; Provision 97.5 0.00031 6.7E-09 70.1 7.8 85 133-220 94-182 (618)
34 cd06558 crotonase-like Crotona 97.5 0.00074 1.6E-08 55.6 8.4 87 131-219 23-130 (195)
35 COG3904 Predicted periplasmic 97.2 0.0021 4.5E-08 57.4 9.1 97 119-220 71-170 (245)
36 PRK06688 enoyl-CoA hydratase; 97.0 0.0073 1.6E-07 52.8 9.9 88 131-220 29-134 (259)
37 PRK07511 enoyl-CoA hydratase; 96.9 0.0091 2E-07 52.4 9.8 48 171-220 89-136 (260)
38 PRK06072 enoyl-CoA hydratase; 96.8 0.014 3.1E-07 51.1 10.1 88 131-220 24-127 (248)
39 PRK08258 enoyl-CoA hydratase; 96.8 0.015 3.2E-07 51.8 10.3 88 131-220 41-151 (277)
40 PRK06210 enoyl-CoA hydratase; 96.6 0.017 3.6E-07 51.1 9.8 47 172-220 100-146 (272)
41 PRK05869 enoyl-CoA hydratase; 96.6 0.021 4.5E-07 49.5 10.1 91 125-219 21-136 (222)
42 PRK09674 enoyl-CoA hydratase-i 96.5 0.022 4.7E-07 50.1 9.8 88 131-220 26-130 (255)
43 PRK05981 enoyl-CoA hydratase; 96.5 0.02 4.4E-07 50.4 9.6 47 171-219 94-140 (266)
44 PRK06495 enoyl-CoA hydratase; 96.5 0.023 5E-07 50.0 9.9 94 125-220 17-135 (257)
45 PRK07468 enoyl-CoA hydratase; 96.5 0.024 5.1E-07 50.0 9.8 46 172-219 92-137 (262)
46 PRK06023 enoyl-CoA hydratase; 96.5 0.026 5.6E-07 49.5 10.0 48 171-220 88-135 (251)
47 PRK07509 enoyl-CoA hydratase; 96.5 0.023 4.9E-07 49.9 9.6 86 131-220 27-140 (262)
48 PRK12319 acetyl-CoA carboxylas 96.5 0.03 6.5E-07 50.6 10.4 93 121-217 69-171 (256)
49 TIGR00513 accA acetyl-CoA carb 96.5 0.018 4E-07 53.6 9.2 93 121-217 122-224 (316)
50 PLN02600 enoyl-CoA hydratase 96.4 0.028 6.1E-07 49.3 9.8 87 131-219 19-125 (251)
51 PRK03580 carnitinyl-CoA dehydr 96.4 0.027 5.9E-07 49.6 9.6 45 171-217 85-129 (261)
52 PF00378 ECH: Enoyl-CoA hydrat 96.4 0.021 4.7E-07 49.3 8.8 85 131-219 22-127 (245)
53 PRK08260 enoyl-CoA hydratase; 96.4 0.026 5.5E-07 50.8 9.5 47 172-220 105-151 (296)
54 PRK06143 enoyl-CoA hydratase; 96.4 0.029 6.4E-07 49.4 9.7 86 131-218 31-136 (256)
55 PRK05864 enoyl-CoA hydratase; 96.4 0.031 6.7E-07 49.7 9.9 46 172-219 101-146 (276)
56 PRK05724 acetyl-CoA carboxylas 96.4 0.027 5.7E-07 52.6 9.7 93 121-217 122-224 (319)
57 PRK05809 3-hydroxybutyryl-CoA 96.4 0.03 6.5E-07 49.2 9.6 86 131-220 28-135 (260)
58 TIGR03189 dienoyl_CoA_hyt cycl 96.4 0.033 7.1E-07 49.1 9.8 94 124-219 13-126 (251)
59 PLN03229 acetyl-coenzyme A car 96.3 0.022 4.8E-07 58.3 9.6 64 152-217 242-315 (762)
60 TIGR03210 badI 2-ketocyclohexa 96.3 0.038 8.2E-07 48.7 10.0 85 131-217 26-129 (256)
61 PRK06190 enoyl-CoA hydratase; 96.3 0.045 9.8E-07 48.6 10.5 85 131-217 28-129 (258)
62 PRK09076 enoyl-CoA hydratase; 96.3 0.033 7.2E-07 49.0 9.6 85 131-219 26-132 (258)
63 PRK07110 polyketide biosynthes 96.3 0.021 4.6E-07 50.1 8.2 87 131-219 29-131 (249)
64 PRK11423 methylmalonyl-CoA dec 96.2 0.038 8.3E-07 48.9 9.6 84 131-217 28-131 (261)
65 PRK08138 enoyl-CoA hydratase; 96.2 0.044 9.5E-07 48.3 9.9 86 131-218 32-134 (261)
66 PLN02664 enoyl-CoA hydratase/d 96.2 0.031 6.7E-07 49.7 8.9 47 171-219 102-148 (275)
67 PRK07854 enoyl-CoA hydratase; 96.2 0.036 7.9E-07 48.5 9.2 86 131-219 24-123 (243)
68 TIGR02280 PaaB1 phenylacetate 96.2 0.043 9.4E-07 48.1 9.6 85 131-218 23-129 (256)
69 PLN02851 3-hydroxyisobutyryl-C 96.2 0.041 9E-07 52.6 10.1 93 123-217 53-173 (407)
70 CHL00198 accA acetyl-CoA carbo 96.2 0.031 6.7E-07 52.3 9.0 92 123-218 127-228 (322)
71 PRK08140 enoyl-CoA hydratase; 96.1 0.063 1.4E-06 47.2 10.4 86 131-219 28-136 (262)
72 PLN03230 acetyl-coenzyme A car 96.1 0.035 7.7E-07 53.7 9.3 85 129-217 200-294 (431)
73 PRK06142 enoyl-CoA hydratase; 96.1 0.036 7.7E-07 49.1 8.8 47 171-219 100-146 (272)
74 TIGR01929 menB naphthoate synt 96.1 0.047 1E-06 48.2 9.4 47 171-219 88-134 (259)
75 PLN03214 probable enoyl-CoA hy 96.1 0.039 8.4E-07 49.5 9.0 46 172-219 99-144 (278)
76 PRK05980 enoyl-CoA hydratase; 96.1 0.045 9.7E-07 48.1 9.2 46 172-219 92-137 (260)
77 PRK08150 enoyl-CoA hydratase; 96.1 0.068 1.5E-06 47.1 10.3 47 171-219 83-129 (255)
78 PRK06127 enoyl-CoA hydratase; 96.0 0.066 1.4E-06 47.5 10.2 47 172-220 98-144 (269)
79 PLN02888 enoyl-CoA hydratase 96.0 0.065 1.4E-06 47.6 10.0 86 131-218 34-135 (265)
80 PRK07327 enoyl-CoA hydratase; 96.0 0.06 1.3E-06 47.7 9.8 86 131-218 36-142 (268)
81 PRK05870 enoyl-CoA hydratase; 96.0 0.044 9.5E-07 48.0 8.8 47 172-220 87-133 (249)
82 PRK07260 enoyl-CoA hydratase; 96.0 0.071 1.5E-06 46.8 10.1 45 171-217 89-133 (255)
83 PLN02921 naphthoate synthase 95.9 0.068 1.5E-06 49.4 10.2 87 131-219 91-198 (327)
84 PRK09245 enoyl-CoA hydratase; 95.9 0.053 1.2E-06 47.8 9.0 48 171-220 94-141 (266)
85 PRK07658 enoyl-CoA hydratase; 95.9 0.075 1.6E-06 46.5 9.6 47 171-219 85-131 (257)
86 PRK07657 enoyl-CoA hydratase; 95.8 0.078 1.7E-06 46.6 9.6 85 131-219 28-134 (260)
87 PRK07938 enoyl-CoA hydratase; 95.8 0.099 2.1E-06 45.9 10.2 46 172-219 86-131 (249)
88 PLN02988 3-hydroxyisobutyryl-C 95.8 0.079 1.7E-06 50.2 9.9 92 124-217 21-140 (381)
89 PRK08272 enoyl-CoA hydratase; 95.7 0.11 2.4E-06 46.9 10.4 45 171-217 118-162 (302)
90 PRK05995 enoyl-CoA hydratase; 95.7 0.11 2.5E-06 45.6 10.0 48 171-220 90-137 (262)
91 PRK05674 gamma-carboxygeranoyl 95.7 0.094 2E-06 46.5 9.5 46 172-219 93-138 (265)
92 PRK09120 p-hydroxycinnamoyl Co 95.6 0.11 2.3E-06 46.5 9.8 86 131-218 32-140 (275)
93 PRK06494 enoyl-CoA hydratase; 95.6 0.13 2.8E-06 45.4 10.2 88 131-220 28-132 (259)
94 PRK07396 dihydroxynaphthoic ac 95.6 0.11 2.4E-06 46.2 9.9 45 171-217 98-142 (273)
95 PRK08139 enoyl-CoA hydratase; 95.6 0.13 2.7E-06 45.7 10.1 46 172-219 96-141 (266)
96 PRK06144 enoyl-CoA hydratase; 95.6 0.087 1.9E-06 46.5 9.0 44 172-217 94-137 (262)
97 PRK07112 polyketide biosynthes 95.5 0.15 3.2E-06 44.9 10.2 48 171-220 87-134 (255)
98 PRK08290 enoyl-CoA hydratase; 95.5 0.093 2E-06 47.3 9.1 44 172-217 110-153 (288)
99 PRK06563 enoyl-CoA hydratase; 95.5 0.11 2.4E-06 45.5 9.3 44 175-220 87-130 (255)
100 PRK12478 enoyl-CoA hydratase; 95.5 0.069 1.5E-06 48.4 8.2 47 172-220 104-150 (298)
101 PLN02157 3-hydroxyisobutyryl-C 95.5 0.12 2.6E-06 49.4 10.1 92 124-217 49-168 (401)
102 PRK08321 naphthoate synthase; 95.5 0.15 3.3E-06 46.2 10.4 44 172-217 127-171 (302)
103 PRK05862 enoyl-CoA hydratase; 95.5 0.15 3.2E-06 44.8 10.0 45 171-217 85-129 (257)
104 PRK05617 3-hydroxyisobutyryl-C 95.5 0.1 2.2E-06 48.3 9.3 46 172-219 92-137 (342)
105 PLN02267 enoyl-CoA hydratase/i 95.4 0.16 3.6E-06 44.4 10.2 85 131-217 23-130 (239)
106 PRK07827 enoyl-CoA hydratase; 95.3 0.16 3.4E-06 44.7 9.5 46 171-218 92-137 (260)
107 COG1024 CaiD Enoyl-CoA hydrata 95.3 0.083 1.8E-06 46.3 7.8 89 130-220 28-136 (257)
108 PRK06213 enoyl-CoA hydratase; 95.2 0.21 4.6E-06 43.1 10.1 47 170-218 81-128 (229)
109 TIGR03200 dearomat_oah 6-oxocy 95.2 0.15 3.3E-06 48.3 9.8 46 171-218 115-160 (360)
110 TIGR03134 malonate_gamma malon 95.1 0.15 3.2E-06 45.7 8.9 85 131-216 45-142 (238)
111 PRK08788 enoyl-CoA hydratase; 95.1 0.11 2.4E-06 47.2 8.2 38 178-217 119-156 (287)
112 PRK08252 enoyl-CoA hydratase; 94.9 0.24 5.2E-06 43.5 9.7 85 131-217 27-126 (254)
113 PRK07659 enoyl-CoA hydratase; 94.6 0.33 7.2E-06 42.8 9.8 47 172-220 90-136 (260)
114 PRK07799 enoyl-CoA hydratase; 94.6 0.3 6.5E-06 43.0 9.4 43 176-220 96-138 (263)
115 PRK08259 enoyl-CoA hydratase; 94.5 0.33 7.1E-06 42.8 9.5 39 178-218 91-129 (254)
116 PLN02874 3-hydroxyisobutyryl-C 94.3 0.32 6.9E-06 45.8 9.5 91 124-218 23-141 (379)
117 TIGR01117 mmdA methylmalonyl-C 94.2 0.32 7E-06 47.8 9.6 88 128-217 328-427 (512)
118 TIGR02440 FadJ fatty oxidation 94.1 0.35 7.6E-06 49.0 9.9 86 131-219 26-135 (699)
119 TIGR02437 FadB fatty oxidation 94.1 0.37 8E-06 49.0 10.0 48 170-219 92-139 (714)
120 PF01039 Carboxyl_trans: Carbo 93.5 0.24 5.1E-06 48.2 7.3 87 129-217 308-406 (493)
121 PRK11154 fadJ multifunctional 93.3 0.68 1.5E-05 46.9 10.4 84 131-219 31-140 (708)
122 PRK08184 benzoyl-CoA-dihydrodi 93.1 0.48 1.1E-05 47.0 8.8 43 172-216 115-159 (550)
123 PRK11730 fadB multifunctional 93.1 0.67 1.4E-05 47.1 9.8 87 131-219 31-139 (715)
124 TIGR03222 benzo_boxC benzoyl-C 93.0 0.61 1.3E-05 46.4 9.4 44 172-217 111-156 (546)
125 KOG1680 Enoyl-CoA hydratase [L 92.2 0.48 1E-05 43.9 6.9 87 130-218 60-163 (290)
126 TIGR02441 fa_ox_alpha_mit fatt 91.6 0.93 2E-05 46.4 8.9 48 170-219 98-147 (737)
127 TIGR03133 malonate_beta malona 91.6 1.6 3.5E-05 40.0 9.6 89 126-217 70-173 (274)
128 PRK07189 malonate decarboxylas 90.2 1.9 4.1E-05 40.1 8.8 89 126-217 79-182 (301)
129 PLN02820 3-methylcrotonyl-CoA 90.1 2.7 5.9E-05 42.1 10.3 86 129-216 380-477 (569)
130 PRK05654 acetyl-CoA carboxylas 88.0 4.2 9E-05 37.5 9.3 88 126-217 132-230 (292)
131 TIGR00515 accD acetyl-CoA carb 87.7 3.7 8.1E-05 37.8 8.8 88 126-217 131-229 (285)
132 TIGR03222 benzo_boxC benzoyl-C 84.0 6.9 0.00015 39.1 9.2 85 131-219 295-411 (546)
133 PF06833 MdcE: Malonate decarb 83.7 4.1 8.9E-05 36.8 6.8 85 128-219 40-141 (234)
134 COG0825 AccA Acetyl-CoA carbox 82.0 1.5 3.2E-05 41.1 3.5 64 152-217 150-223 (317)
135 PLN02820 3-methylcrotonyl-CoA 79.7 14 0.00029 37.3 9.5 87 126-216 140-240 (569)
136 PRK08184 benzoyl-CoA-dihydrodi 79.2 11 0.00023 37.8 8.6 86 131-220 299-416 (550)
137 PF08496 Peptidase_S49_N: Pept 77.7 3.5 7.6E-05 34.8 4.1 44 124-167 102-146 (155)
138 TIGR01117 mmdA methylmalonyl-C 72.1 20 0.00042 35.5 8.3 85 126-214 93-186 (512)
139 CHL00174 accD acetyl-CoA carbo 64.6 43 0.00092 31.3 8.4 87 126-216 144-242 (296)
140 cd06567 Peptidase_S41 C-termin 64.3 46 0.00099 28.1 8.1 68 133-202 72-166 (224)
141 TIGR00225 prc C-terminal pepti 54.8 48 0.001 30.3 7.0 72 131-203 161-257 (334)
142 cd01455 vWA_F11C1-5a_type Von 50.2 84 0.0018 27.5 7.4 85 103-190 64-152 (191)
143 PF01039 Carboxyl_trans: Carbo 47.6 33 0.00071 33.5 5.0 87 126-216 68-166 (493)
144 PF14566 PTPlike_phytase: Inos 47.5 55 0.0012 26.7 5.6 41 132-177 107-149 (149)
145 cd07560 Peptidase_S41_CPP C-te 46.9 1.5E+02 0.0032 25.6 8.4 23 180-202 131-153 (211)
146 COG4799 Acetyl-CoA carboxylase 44.5 49 0.0011 33.3 5.7 88 127-216 336-435 (526)
147 PLN00125 Succinyl-CoA ligase [ 44.4 82 0.0018 29.2 6.8 65 123-192 179-245 (300)
148 PLN00049 carboxyl-terminal pro 40.6 1.1E+02 0.0023 29.0 7.1 71 131-202 204-301 (389)
149 KOG1681 Enoyl-CoA isomerase [L 40.3 6.7 0.00015 36.1 -0.9 50 169-220 115-164 (292)
150 KOG1682 Enoyl-CoA isomerase [L 39.3 17 0.00037 33.1 1.5 44 171-216 116-159 (287)
151 cd01844 SGNH_hydrolase_like_6 38.5 88 0.0019 25.1 5.5 18 110-127 20-37 (177)
152 TIGR00661 MJ1255 conserved hyp 38.4 52 0.0011 29.3 4.5 35 155-190 2-37 (321)
153 PF13607 Succ_CoA_lig: Succiny 37.9 1.2E+02 0.0026 24.8 6.1 61 122-190 29-91 (138)
154 TIGR02886 spore_II_AA anti-sig 37.8 49 0.0011 24.5 3.6 77 123-203 10-92 (106)
155 KOG1679 Enoyl-CoA hydratase [L 37.5 81 0.0018 29.1 5.5 49 167-217 111-159 (291)
156 KOG1684 Enoyl-CoA hydratase [L 37.1 96 0.0021 30.3 6.2 90 123-214 49-167 (401)
157 TIGR00377 ant_ant_sig anti-ant 35.8 1.7E+02 0.0038 21.3 6.9 76 123-202 14-95 (108)
158 PRK11186 carboxy-terminal prot 35.4 1.2E+02 0.0025 31.4 6.9 75 132-207 364-464 (667)
159 cd01834 SGNH_hydrolase_like_2 35.2 1.2E+02 0.0027 23.7 5.8 68 122-192 2-73 (191)
160 cd07561 Peptidase_S41_CPP_like 34.0 2.1E+02 0.0045 25.6 7.5 21 182-202 162-182 (256)
161 smart00245 TSPc tail specific 33.5 2.2E+02 0.0048 23.8 7.3 23 180-202 112-134 (192)
162 cd07562 Peptidase_S41_TRI Tric 33.4 2.4E+02 0.0052 24.8 7.8 81 117-202 82-185 (266)
163 PF03808 Glyco_tran_WecB: Glyc 33.3 2.8E+02 0.0061 23.0 8.4 61 123-190 50-111 (172)
164 PF03572 Peptidase_S41: Peptid 32.0 2E+02 0.0043 22.6 6.4 51 152-202 32-112 (169)
165 cd01825 SGNH_hydrolase_peri1 S 29.8 1.3E+02 0.0028 23.8 5.0 59 123-191 1-67 (189)
166 TIGR00615 recR recombination p 29.3 1.8E+02 0.004 25.6 6.2 86 107-193 82-176 (195)
167 PRK14500 putative bifunctional 28.7 28 0.0006 32.7 1.1 49 166-215 122-181 (346)
168 COG0793 Prc Periplasmic protea 28.7 1.5E+02 0.0032 28.5 6.0 76 131-207 213-314 (406)
169 PRK13170 hisH imidazole glycer 27.9 51 0.0011 27.9 2.5 29 162-190 45-80 (196)
170 cd07563 Peptidase_S41_IRBP Int 26.4 4.1E+02 0.009 22.9 8.0 22 181-202 158-179 (250)
171 cd07041 STAS_RsbR_RsbS_like Su 24.8 2.9E+02 0.0063 20.4 6.8 79 123-203 12-94 (109)
172 PRK06091 membrane protein FdrA 23.4 1.3E+02 0.0029 30.5 4.8 68 123-192 222-291 (555)
173 TIGR00282 metallophosphoestera 22.8 1.6E+02 0.0035 26.8 4.9 63 123-187 2-66 (266)
174 COG0757 AroQ 3-dehydroquinate 22.4 1.5E+02 0.0032 25.3 4.2 27 157-184 70-96 (146)
175 cd01025 TOPRIM_recR TOPRIM_rec 22.3 3.6E+02 0.0078 21.6 6.2 85 108-193 5-98 (112)
176 COG3904 Predicted periplasmic 21.7 2.5E+02 0.0055 25.7 5.7 53 129-185 55-107 (245)
177 cd06844 STAS Sulphate Transpor 21.7 1E+02 0.0022 22.7 2.9 23 123-145 10-32 (100)
178 KOG3093 5-formyltetrahydrofola 21.6 1.1E+02 0.0024 27.3 3.4 45 136-180 31-75 (200)
179 COG1366 SpoIIAA Anti-anti-sigm 21.4 3.7E+02 0.0081 20.4 6.2 76 124-202 16-96 (117)
180 KOG0069 Glyoxylate/hydroxypyru 21.4 2.4E+02 0.0052 26.9 5.8 62 114-180 210-271 (336)
181 PRK14635 hypothetical protein; 21.0 2E+02 0.0043 24.2 4.7 37 129-165 48-85 (162)
182 PRK06476 pyrroline-5-carboxyla 20.9 65 0.0014 28.0 1.9 45 130-174 183-234 (258)
183 PTZ00187 succinyl-CoA syntheta 20.6 3.9E+02 0.0084 25.2 7.0 65 123-192 198-264 (317)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-48 Score=343.64 Aligned_cols=176 Identities=41% Similarity=0.644 Sum_probs=159.7
Q ss_pred ccccccccchhhhhhhhhcccccccccccceeeeecCCCccccCCCCcCccceeeccCCCCCCCCcccccccCCCCCCCC
Q 027632 26 SHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPP 105 (221)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 105 (221)
+.++...+.|.+.++|.+....+|..++++-++++++.-|++. .|+++.+.++|..++. ..+ +|
T Consensus 15 ~~~~~~~l~P~~~~~~~~~~~~~r~~~~~~~~s~~sg~~~~~~--------~~~~~~~~~~p~~~~~---~~~---rG-- 78 (275)
T KOG0840|consen 15 SPKRFSGLNPASTSNFPKQRNVRRQLKSSTPKSLRSGGSSNSR--------GWSLRAPILVPRFPIE---SPG---RG-- 78 (275)
T ss_pred ccchhcccCchhhhhccccccchhhhhccCcccccccCCCCCC--------cccccccccCCcceee---ccc---cC--
Confidence 6667778888888999988888899988888999999888733 7999999999944333 333 33
Q ss_pred CccccchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEE
Q 027632 106 PMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST 185 (221)
Q Consensus 106 p~~~e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~T 185 (221)
.|+|+||+++||++|||||+++|||++++.|++||+||+++|++|||+||||||||++++|++|||+|+++++||.|
T Consensus 79 ---~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~T 155 (275)
T KOG0840|consen 79 ---RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVST 155 (275)
T ss_pred ---CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCcee
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 186 VCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 186 v~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+|.|+|||||++||+||+||+|+++||+.+|||-.
T Consensus 156 ic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP 190 (275)
T KOG0840|consen 156 ICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQP 190 (275)
T ss_pred eehhhHHhHHHHHHhcCCCcceeecCCceeEEecc
Confidence 99999999999999999999999999999999964
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.3e-39 Score=278.63 Aligned_cols=111 Identities=54% Similarity=0.868 Sum_probs=108.1
Q ss_pred cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (221)
Q Consensus 110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G 189 (221)
|+.+|++++|+++|+|||+|+|++.+++.+++||++|+++++.|+|+||||||||+|++|++|||+||++++||+|+|.|
T Consensus 15 ~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G 94 (200)
T COG0740 15 ERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICMG 94 (200)
T ss_pred CChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEec
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+|||||++|++||++|||+++|||.+|||..
T Consensus 95 ~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP 125 (200)
T COG0740 95 QAASMGSVLLMAGDKGKRFALPNARIMIHQP 125 (200)
T ss_pred HHHhHHHHHHhcCCCCCceeCCCceEEEecC
Confidence 9999999999999999999999999999975
No 3
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=1.2e-38 Score=274.08 Aligned_cols=127 Identities=35% Similarity=0.682 Sum_probs=116.2
Q ss_pred CCCCCCCCcccccccCCCCCCCCCccccchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCC
Q 027632 83 DLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP 162 (221)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~p~~~e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP 162 (221)
++++|..++.++... ..+|.|++++||++|||||+++||+++++++++||++|+.+++.++|+||||||
T Consensus 2 ~~~~p~~~~~~~~~~-----------~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSp 70 (200)
T CHL00028 2 PIGVPKVPFRLPGEE-----------DATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSP 70 (200)
T ss_pred CCCCceeeeecCCCC-----------CcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCC
Confidence 467777765422111 146889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 163 GGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 163 GGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
||+|++|++|||+|+.++.+|+|+|.|+|||||++||++|+||+|+++|||++|||..
T Consensus 71 GG~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp 128 (200)
T CHL00028 71 GGSVISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQP 128 (200)
T ss_pred CcchhhHHHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999974
No 4
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=6.6e-38 Score=270.18 Aligned_cols=111 Identities=49% Similarity=0.796 Sum_probs=108.2
Q ss_pred cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (221)
Q Consensus 110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G 189 (221)
++|.|++++||++|||||+++|++++|++|+++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|
T Consensus 15 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G 94 (201)
T PRK14513 15 ERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVG 94 (201)
T ss_pred ccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEe
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+|||||++|++||+||||+++|||++|||..
T Consensus 95 ~AaS~As~il~aG~kgkR~~~pna~iMIHqp 125 (201)
T PRK14513 95 IAMSMGSVLLMAGDKGKRMALPNSRIMIHQG 125 (201)
T ss_pred eehhhHHHHHhcCCCCcEEecCCeEEEEecC
Confidence 9999999999999999999999999999975
No 5
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=8e-38 Score=273.58 Aligned_cols=127 Identities=39% Similarity=0.611 Sum_probs=115.5
Q ss_pred CCCCCCCCcccccccCCCCCCCCCccccchhHHHHhhcCCcEEEEcCccChh----------HHHHHHHHHhcccccCCC
Q 027632 83 DLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDD----------MANIIVAQLLYLDAVDPN 152 (221)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~p~~~e~~~di~s~L~~~RIIfL~G~Idd~----------~A~~IiaqLl~Lds~d~~ 152 (221)
+.++|.+||...... ..++| |++++|+++|||||+++|+|+ +++.|++||++|+.++++
T Consensus 2 ~~~~~~~~~~~~~~~----~~~~~-------d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~ 70 (222)
T PRK12552 2 PIMAVQAPYYGDAVM----RTPPP-------DLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPE 70 (222)
T ss_pred CCCcccccccCCCCC----CCCCc-------CHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCC
Confidence 567888888744211 22433 799999999999999999999 999999999999999999
Q ss_pred CceEEEEeCCCCC---------HHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 153 KDIIMYLNSPGGS---------VTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 153 kdI~LyINSPGGs---------V~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
|+|+||||||||+ +++|++|||+|++++++|+|+|.|+|||||++||+||+||||+++|||++|||..
T Consensus 71 k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP 147 (222)
T PRK12552 71 KPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQP 147 (222)
T ss_pred CCEEEEEeCCCCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccC
Confidence 9999999999988 7788999999999999999999999999999999999999999999999999974
No 6
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=8e-38 Score=273.21 Aligned_cols=111 Identities=50% Similarity=0.736 Sum_probs=108.2
Q ss_pred cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (221)
Q Consensus 110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G 189 (221)
+++.|++++||++|||||+|+||+++++.+++||++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|.|
T Consensus 42 ~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G 121 (221)
T PRK14514 42 VTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTG 121 (221)
T ss_pred CcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+|||||++|+++|+++||+++|||.+|||..
T Consensus 122 ~AAS~AslIl~aG~~gkR~~~pna~iMiHqP 152 (221)
T PRK14514 122 MAASMASVLLVAGTKGKRSALPHSRVMIHQP 152 (221)
T ss_pred EehhHHHHHHhcCCCCceeeCCCCEEEeccC
Confidence 9999999999999999999999999999974
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=8.2e-37 Score=262.11 Aligned_cols=110 Identities=56% Similarity=0.878 Sum_probs=107.2
Q ss_pred chhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcce
Q 027632 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (221)
Q Consensus 111 ~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~Gl 190 (221)
++.|++++|+++|||||+++||++++++++++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|+
T Consensus 14 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~ 93 (196)
T PRK12551 14 RAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGL 93 (196)
T ss_pred cccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 191 AASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 191 AASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
|||||++|+++|++++|+++|||++|||..
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP 123 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQP 123 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEEEecC
Confidence 999999999999999999999999999974
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=1.5e-33 Score=239.76 Aligned_cols=111 Identities=55% Similarity=0.885 Sum_probs=107.7
Q ss_pred cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (221)
Q Consensus 110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G 189 (221)
++|.|++++|+++|+|||+|+|+++++++++++|++|+.+++.++|+||||||||++++|++|||+|+.++++|+|+|.|
T Consensus 14 ~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G 93 (191)
T TIGR00493 14 ERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIG 93 (191)
T ss_pred cccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+|||||++|+++|++++|+++|||++|||..
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p 124 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQP 124 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCceEEEecC
Confidence 9999999999999999999999999999975
No 9
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2.1e-32 Score=233.97 Aligned_cols=128 Identities=52% Similarity=0.807 Sum_probs=116.0
Q ss_pred CCCCCCCCcccccccCCCCCCCCCccccchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCC
Q 027632 83 DLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP 162 (221)
Q Consensus 83 ~~~~p~~~~~~~~~~~~~~~~~~p~~~e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP 162 (221)
|+++|.+|+... .+. . .+.|.|++++|+++|||||+|+|++++++.++++|++|+.+++.++|+||||||
T Consensus 2 ~~~~~~~p~~~~--~~~--~------~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSp 71 (200)
T PRK00277 2 PIMMNLVPMVIE--QTS--R------GERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSP 71 (200)
T ss_pred CCCCCCCceeec--cCC--C------CcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECC
Confidence 567777776521 111 1 256889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 163 GGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 163 GGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
||++++|++|||+|++++.+|+|+|.|.|+|||++|+++|++++|+++||+.+|||..
T Consensus 72 GG~v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p 129 (200)
T PRK00277 72 GGSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQP 129 (200)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999964
No 10
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=4.7e-33 Score=231.04 Aligned_cols=111 Identities=41% Similarity=0.667 Sum_probs=105.9
Q ss_pred cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (221)
Q Consensus 110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G 189 (221)
++|+||+++|+++|+|||+|+||+++++.++++|++|+.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|
T Consensus 4 ~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G 83 (182)
T PF00574_consen 4 EEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLG 83 (182)
T ss_dssp EEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred cEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeC
Confidence 58999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+|+|||++|+++|++++|++.|||.+|||.+
T Consensus 84 ~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p 114 (182)
T PF00574_consen 84 LAASAATLIFLAGDKGKRYASPNSRFMIHQP 114 (182)
T ss_dssp EEETHHHHHHHTSSTTTEEE-TT-EEEES-C
T ss_pred ccccceehhhhcCCcCceeeeecCEEEeecc
Confidence 9999999999999999999999999999985
No 11
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.98 E-value=3.4e-32 Score=233.07 Aligned_cols=107 Identities=32% Similarity=0.557 Sum_probs=104.4
Q ss_pred HHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceech
Q 027632 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS 193 (221)
Q Consensus 114 di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAAS 193 (221)
+++++|+++|+|||+|+|++++++.|+++|++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+|||
T Consensus 15 ~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~AaS 94 (197)
T PRK14512 15 KSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVAS 94 (197)
T ss_pred hHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeHh
Confidence 68999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 194 MGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 194 mAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
||++|+++|++++|+++|||.+|||..
T Consensus 95 aaslIl~ag~~~~R~~~p~s~imiHqP 121 (197)
T PRK14512 95 AAALIFLAAKKESRFSLPNARYLLHQP 121 (197)
T ss_pred HHHHHHhcCCcCceeECCCCcEEEEcC
Confidence 999999999999999999999999974
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.97 E-value=2.6e-31 Score=228.59 Aligned_cols=109 Identities=53% Similarity=0.810 Sum_probs=106.1
Q ss_pred hhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccee
Q 027632 112 FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLA 191 (221)
Q Consensus 112 ~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlA 191 (221)
+.|++++|+++|+|||+|+|++++++.++++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|+|
T Consensus 25 ~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 25 ESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred cccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence 45899999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 192 ASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 192 ASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+|||++|++||++++|+++|||.+|||..
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p 133 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQP 133 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCc
Confidence 99999999999999999999999999975
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=99.97 E-value=6.4e-31 Score=218.54 Aligned_cols=107 Identities=55% Similarity=0.938 Sum_probs=104.3
Q ss_pred HHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceech
Q 027632 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS 193 (221)
Q Consensus 114 di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAAS 193 (221)
|++++|+++|+|||+|+|++++++.++++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 58999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 194 MGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 194 mAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
||++|+++|++|+|+++||+.+|||..
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~ 107 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQP 107 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCC
Confidence 999999999999999999999999975
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.95 E-value=2e-28 Score=202.79 Aligned_cols=98 Identities=51% Similarity=0.738 Sum_probs=95.8
Q ss_pred cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcC
Q 027632 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202 (221)
Q Consensus 123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAG 202 (221)
|+|||+|+|++.+++.++++|++|+.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 79999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEeecCceeEEeec
Q 027632 203 TKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 203 dkgkR~AlPnS~~MIh~~ 220 (221)
++|+|+++||+.+|||..
T Consensus 81 ~~g~r~~~p~a~~~ih~~ 98 (162)
T cd07013 81 AKGKRFILPNAMMMIHQP 98 (162)
T ss_pred CCCcEEEecCEEEEEccC
Confidence 999999999999999963
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.85 E-value=5.8e-21 Score=155.69 Aligned_cols=92 Identities=28% Similarity=0.314 Sum_probs=87.5
Q ss_pred EEEEcCccCh---hHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHh
Q 027632 124 IIRCGGPVED---DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLS 200 (221)
Q Consensus 124 IIfL~G~Idd---~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~Ila 200 (221)
-|+|+|+|++ .+++.+.++|..++.+ ++|.|+||||||++++|+.|||.|+.++.||.|++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 5899999999 7999999999988754 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEeecCceeEEeec
Q 027632 201 AGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 201 AGdkgkR~AlPnS~~MIh~~ 220 (221)
+|| +|++.|++.||+|.+
T Consensus 79 a~d--~~~~~~~a~~~~~~~ 96 (160)
T cd07016 79 AGD--EVEMPPNAMLMIHNP 96 (160)
T ss_pred cCC--eEEECCCcEEEEECC
Confidence 999 799999999999975
No 16
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.78 E-value=9.4e-19 Score=141.80 Aligned_cols=95 Identities=31% Similarity=0.375 Sum_probs=91.9
Q ss_pred EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCC
Q 027632 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 203 (221)
Q Consensus 124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGd 203 (221)
+|+|.|+|++.+.+.++++|..++.+++.+.|.|++|||||++.++..|+++|+.+++||.+++.|.|+|+|++|+++|+
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999988889999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEeecCceeEEeec
Q 027632 204 KGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 204 kgkR~AlPnS~~MIh~~ 220 (221)
+|++.|++.+++|.+
T Consensus 81 --~~~~~~~a~~~~~g~ 95 (161)
T cd00394 81 --KIVMAPGTRVGSHGP 95 (161)
T ss_pred --EEEECCCCEEEEeee
Confidence 899999999999976
No 17
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.77 E-value=2.1e-18 Score=145.81 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=85.8
Q ss_pred EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc---ceechHHHHHHh
Q 027632 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS 200 (221)
Q Consensus 124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~---GlAASmAa~Ila 200 (221)
+|.+.|.|++.++..+...|.... +++.+.|.|+||||||++++++.|||+|+..+.||.|+|. |+|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 578899999998888877776544 4568999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCcEEeecCceeEEeec
Q 027632 201 AGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 201 AGdkgkR~AlPnS~~MIh~~ 220 (221)
+|+ +|++.|++.++.|.+
T Consensus 82 a~~--~i~m~p~s~iG~~~p 99 (172)
T cd07015 82 GSH--LIAMAPGTSIGACRP 99 (172)
T ss_pred hcC--ceEECCCCEEEEccc
Confidence 999 599999999999975
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.75 E-value=6.9e-18 Score=142.04 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=88.5
Q ss_pred EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc---ceechHHHHHHh
Q 027632 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS 200 (221)
Q Consensus 124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~---GlAASmAa~Ila 200 (221)
+|.|.|.|++..++.+..+|..++.+ +.+.|.|+||||||+++++..||+.|+.+++||.+.+. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 68899999999999999999998854 48999999999999999999999999999999999998 999999999999
Q ss_pred cCCCCcEEeecCceeEEeec
Q 027632 201 AGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 201 AGdkgkR~AlPnS~~MIh~~ 220 (221)
+|| +|++.|++.|++|.+
T Consensus 82 a~D--~iva~p~a~~g~~~~ 99 (187)
T cd07020 82 AAH--IAAMAPGTNIGAAHP 99 (187)
T ss_pred hCC--ceeECCCCcEEeccc
Confidence 999 789999999999875
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.61 E-value=3.8e-15 Score=126.07 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=85.9
Q ss_pred EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCC
Q 027632 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 203 (221)
Q Consensus 124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGd 203 (221)
+|.|.|.|++..+..+...|.....+ +.+.|.|+||||||.++++..||+.|+..+.||.+++.|.|+|+|++|+++|+
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 57899999999888887777765544 37899999999999999999999999999999999999999999999999998
Q ss_pred CCcEEeecCceeEEeec
Q 027632 204 KGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 204 kgkR~AlPnS~~MIh~~ 220 (221)
++++.|++.++.|.+
T Consensus 82 --~i~m~p~a~iG~~~~ 96 (178)
T cd07021 82 --EIYMAPGATIGAAEP 96 (178)
T ss_pred --eEEECCCCeEecCee
Confidence 799999999999865
No 20
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.45 E-value=2.5e-13 Score=123.82 Aligned_cols=91 Identities=26% Similarity=0.283 Sum_probs=80.4
Q ss_pred EEEEcCccChhH-------HHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCC--CeEEEEcceechH
Q 027632 124 IIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRP--DVSTVCVGLAASM 194 (221)
Q Consensus 124 IIfL~G~Idd~~-------A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~--~V~Tv~~GlAASm 194 (221)
+|.+.|.|.+.. .+.+.+.|..+..++..|.|.|.||||||++.+...||+.|+.++. ||+..+.++|||+
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence 578888887543 5566677777777888999999999999999999999999999986 5999999999999
Q ss_pred HHHHHhcCCCCcEEeecCceeE
Q 027632 195 GAFLLSAGTKGKYLCFLAWFLL 216 (221)
Q Consensus 195 Aa~IlaAGdkgkR~AlPnS~~M 216 (221)
|++|.|+|| +++|.|+|++-
T Consensus 143 GY~IA~aAd--~I~a~p~si~G 162 (317)
T COG0616 143 GYYIALAAD--KIVADPSSITG 162 (317)
T ss_pred hhhhhccCC--EEEecCCceee
Confidence 999999998 79999999863
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.33 E-value=8.5e-12 Score=106.65 Aligned_cols=91 Identities=20% Similarity=0.308 Sum_probs=82.9
Q ss_pred EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEcceechHHHHHHhc
Q 027632 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGLAASMGAFLLSA 201 (221)
Q Consensus 124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~--~~V~Tv~~GlAASmAa~IlaA 201 (221)
+|.|.|.|+ .....+.+.|..+..++..+.|.|++|||||++..+..|++.|+.++ +||.+++.|.|+|+|++|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 689999998 55678888888888777789999999999999999999999999998 999999999999999999999
Q ss_pred CCCCcEEeecCceeEE
Q 027632 202 GTKGKYLCFLAWFLLV 217 (221)
Q Consensus 202 GdkgkR~AlPnS~~MI 217 (221)
|| +|++.|++.+..
T Consensus 83 aD--~i~a~p~a~vg~ 96 (207)
T TIGR00706 83 AD--EIVANPGTITGS 96 (207)
T ss_pred CC--EEEECCCCeEEe
Confidence 98 799999997644
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.31 E-value=9.9e-12 Score=105.66 Aligned_cols=93 Identities=28% Similarity=0.346 Sum_probs=84.9
Q ss_pred cEEEEcCccC---hhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC---CCeEEEEcceechHHH
Q 027632 123 RIIRCGGPVE---DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAASMGA 196 (221)
Q Consensus 123 RIIfL~G~Id---d~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~---~~V~Tv~~GlAASmAa 196 (221)
-+|.|.|.|+ +.+...+..+|..+..++..+.|.|++|||||++..+..|+++|+.++ +||.+++.|.|+|+|+
T Consensus 3 ~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~ 82 (208)
T cd07023 3 AVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGY 82 (208)
T ss_pred EEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHH
Confidence 3689999999 789999999999998888899999999999999999999999987664 6999999999999999
Q ss_pred HHHhcCCCCcEEeecCceeEE
Q 027632 197 FLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 197 ~IlaAGdkgkR~AlPnS~~MI 217 (221)
+|+++|| +|++.|++.+-.
T Consensus 83 ~lA~aaD--~i~a~~~s~~g~ 101 (208)
T cd07023 83 YIAAAAD--KIVANPTTITGS 101 (208)
T ss_pred HHHhhCC--EEEECCCCeEEe
Confidence 9999998 799999998743
No 23
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.20 E-value=5.3e-11 Score=116.60 Aligned_cols=90 Identities=26% Similarity=0.287 Sum_probs=79.3
Q ss_pred EEEEcCccChh-------HHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC---CCeEEEEcceech
Q 027632 124 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAAS 193 (221)
Q Consensus 124 IIfL~G~Idd~-------~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~---~~V~Tv~~GlAAS 193 (221)
+|++.|+|.+. ..+.+.++|..+..++..|.|.|+||||||++.++..|++.|+..+ +||.+.+.|+|||
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 79999999752 2456777777777777789999999999999999999999998654 7999999999999
Q ss_pred HHHHHHhcCCCCcEEeecCcee
Q 027632 194 MGAFLLSAGTKGKYLCFLAWFL 215 (221)
Q Consensus 194 mAa~IlaAGdkgkR~AlPnS~~ 215 (221)
+|++|+++|| +++|.|++++
T Consensus 392 ggY~iA~aaD--~I~a~p~t~~ 411 (584)
T TIGR00705 392 GGYWIASAAD--YIVASPNTIT 411 (584)
T ss_pred HHHHHHHhCC--EEEECCCCee
Confidence 9999999998 7999999987
No 24
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.17 E-value=1.7e-10 Score=98.94 Aligned_cols=84 Identities=25% Similarity=0.230 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEcceechHHHHHHhcCCCCcEEeec
Q 027632 134 DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGLAASMGAFLLSAGTKGKYLCFL 211 (221)
Q Consensus 134 ~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~--~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlP 211 (221)
.+...+++.|..++.++..+.|.|.+|||||++.....|++.|+.++ +||.+++.|.|+|+|++|+++|| ++++.|
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD--~i~a~~ 102 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAAD--RIVVTP 102 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCC--EEEEcC
Confidence 45778999999988888889999999999999999999999999998 99999999999999999999998 799999
Q ss_pred CceeEEee
Q 027632 212 AWFLLVIF 219 (221)
Q Consensus 212 nS~~MIh~ 219 (221)
++.+..+-
T Consensus 103 ~a~~g~iG 110 (214)
T cd07022 103 TAGVGSIG 110 (214)
T ss_pred CCeEEeee
Confidence 99976543
No 25
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.10 E-value=5e-10 Score=93.06 Aligned_cols=84 Identities=25% Similarity=0.195 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc---CCCeEEEEcceechHHHHHHhcCCCCcEEeec
Q 027632 135 MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFL 211 (221)
Q Consensus 135 ~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i---~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlP 211 (221)
+.+.+.+.|..++.++..+.|.|.+|||||++.....+++.++.+ ++||.+.+.|.|+++|+.|+++|| .|++.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D--~i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN--YIVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC--EEEECC
Confidence 356888888888877778999999999999999888887766554 689999999999999999999999 799999
Q ss_pred CceeEEeec
Q 027632 212 AWFLLVIFV 220 (221)
Q Consensus 212 nS~~MIh~~ 220 (221)
++.|++|.+
T Consensus 101 ~a~~~~~G~ 109 (177)
T cd07014 101 STLVGSIGI 109 (177)
T ss_pred CCeEEEech
Confidence 999999976
No 26
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.04 E-value=9.3e-10 Score=101.87 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=71.9
Q ss_pred EEEEcCccChhHHHHHHHHHhcc-cccCCCCceEEEEeCCCCCHHHHHHHHHHH---HhcCCCeEEEEcceechHHHHHH
Q 027632 124 IIRCGGPVEDDMANIIVAQLLYL-DAVDPNKDIIMYLNSPGGSVTAGMAIFDTI---RHIRPDVSTVCVGLAASMGAFLL 199 (221)
Q Consensus 124 IIfL~G~Idd~~A~~IiaqLl~L-ds~d~~kdI~LyINSPGGsV~aGlaIYDtm---r~i~~~V~Tv~~GlAASmAa~Il 199 (221)
+|.+.|.|+...+..+...+..+ ....+.+.|.|.||||||+|.+.--++..| +..+.||++.+.++|||.|++|+
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA 173 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA 173 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence 58889999977654444444432 222234789999999999998855555544 44457999999999999999999
Q ss_pred hcCCCCcEEeecCceeEEeec
Q 027632 200 SAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 200 aAGdkgkR~AlPnS~~MIh~~ 220 (221)
|+|| +.++.|.+++..+-|
T Consensus 174 saAD--~I~A~P~a~vGSIGV 192 (330)
T PRK11778 174 CVAD--KIIAAPFAIVGSIGV 192 (330)
T ss_pred HhCC--EEEECCCCeEEeeee
Confidence 9998 789999998876543
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.04 E-value=1.4e-09 Score=93.33 Aligned_cols=93 Identities=25% Similarity=0.244 Sum_probs=80.3
Q ss_pred EEEEcCccChhH-------HHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh---cCCCeEEEEcceech
Q 027632 124 IIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH---IRPDVSTVCVGLAAS 193 (221)
Q Consensus 124 IIfL~G~Idd~~-------A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~---i~~~V~Tv~~GlAAS 193 (221)
+|.+.|+|.+.. ...+...|..+..++..+.|.|.+|||||++.+...|+++|+. .++||.+.+.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 677888887653 3678888888888877899999999999999999999887654 567999999999999
Q ss_pred HHHHHHhcCCCCcEEeecCceeEEe
Q 027632 194 MGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 194 mAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
+|++|+++|| ++++.|++.+..+
T Consensus 84 ~gy~la~~aD--~i~a~~~a~~gsi 106 (211)
T cd07019 84 GGYWISTPAN--YIVANPSTLTGSI 106 (211)
T ss_pred HHHHHHHhCC--EEEEcCCCEEEEe
Confidence 9999999998 7999999988654
No 28
>PRK10949 protease 4; Provisional
Probab=99.02 E-value=8.4e-10 Score=109.16 Aligned_cols=92 Identities=26% Similarity=0.260 Sum_probs=81.1
Q ss_pred EEEEcCccChh-------HHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC---CCeEEEEcceech
Q 027632 124 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAAS 193 (221)
Q Consensus 124 IIfL~G~Idd~-------~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~---~~V~Tv~~GlAAS 193 (221)
+|.+.|.|.+. ..+.++.+|.....++..|.|.|.||||||++.+...|++.|+..+ +||++...|+|||
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 69999999753 3567888888888888899999999999999999999999997664 7999999999999
Q ss_pred HHHHHHhcCCCCcEEeecCceeEE
Q 027632 194 MGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 194 mAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.|++|+++|| +.+|.|.+++.-
T Consensus 410 ggY~iA~aad--~I~a~p~t~tGS 431 (618)
T PRK10949 410 GGYWISTPAN--YIVASPSTLTGS 431 (618)
T ss_pred HHHHHHHhcC--EEEECCCCceee
Confidence 9999999998 789999887543
No 29
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.86 E-value=1.3e-08 Score=92.71 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=71.9
Q ss_pred CccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEE
Q 027632 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYL 208 (221)
Q Consensus 129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~ 208 (221)
..|+.+.++.+...+... +++++|.|.||+|||.+.++..|.+.|+..+.+++.++-..|.|+|++|+++|| +.+
T Consensus 70 ~~I~i~dse~v~raI~~~---~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaAD--eIv 144 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAAD--EIV 144 (285)
T ss_pred eeEcHhhHHHHHHHHHhc---CCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCC--eEE
Confidence 347777778776666543 446789999999999999999999999999999999999999999999999998 679
Q ss_pred eecCcee
Q 027632 209 CFLAWFL 215 (221)
Q Consensus 209 AlPnS~~ 215 (221)
+-|+|.+
T Consensus 145 M~p~a~L 151 (285)
T PF01972_consen 145 MGPGAVL 151 (285)
T ss_pred ECCCCcc
Confidence 9999875
No 30
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.80 E-value=1.5e-08 Score=87.47 Aligned_cols=89 Identities=13% Similarity=0.057 Sum_probs=78.5
Q ss_pred CccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc---CCCeEEEEcceechHHHHHHhcCCCC
Q 027632 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKG 205 (221)
Q Consensus 129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i---~~~V~Tv~~GlAASmAa~IlaAGdkg 205 (221)
+..+......++.+|..+..++..+.|.|.+|||||++.+...|++.|+.+ ++||.+++.| |+|.|++|+++||
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad-- 100 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAAD-- 100 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCC--
Confidence 445566778899999998888889999999999999999999999999765 4799999987 9999999999998
Q ss_pred cEEeecCceeEEeec
Q 027632 206 KYLCFLAWFLLVIFV 220 (221)
Q Consensus 206 kR~AlPnS~~MIh~~ 220 (221)
++++.|++.+.++-|
T Consensus 101 ~I~a~p~~~vg~iGv 115 (222)
T cd07018 101 EIYLNPSGSVELTGL 115 (222)
T ss_pred EEEECCCceEEeecc
Confidence 799999999988754
No 31
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=9.8e-07 Score=84.56 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=76.1
Q ss_pred cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc---ceechHHHHHH
Q 027632 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLL 199 (221)
Q Consensus 123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~---GlAASmAa~Il 199 (221)
.+|.+.|+|++.+++.+...|-.-+. +....+.|.+|+|||-+.+...|.+.+...+.||..++. +.|+|+|++|+
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHH
Confidence 46899999999999999888876544 336889999999999999999999999999999776654 47999999999
Q ss_pred hcCCCCcEEeecCcee
Q 027632 200 SAGTKGKYLCFLAWFL 215 (221)
Q Consensus 200 aAGdkgkR~AlPnS~~ 215 (221)
++.+ .-++.|.+.+
T Consensus 108 m~~h--iaaMAPgT~i 121 (436)
T COG1030 108 MATH--IAAMAPGTNI 121 (436)
T ss_pred HhcC--hhhhCCCCcc
Confidence 9998 4577776543
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.62 E-value=0.00018 Score=71.11 Aligned_cols=84 Identities=10% Similarity=-0.063 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcccccCCCCceEEEEeC-CCCCHHHHHHHHHHHHhcC---CCeEEEEcceechHHHHHHhcCCCCcEEe
Q 027632 134 DMANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAASMGAFLLSAGTKGKYLC 209 (221)
Q Consensus 134 ~~A~~IiaqLl~Lds~d~~kdI~LyINS-PGGsV~aGlaIYDtmr~i~---~~V~Tv~~GlAASmAa~IlaAGdkgkR~A 209 (221)
.....++.+|.....++..|.|.|.||+ |||++.....|+++|+..+ +||+++..+. +|.+++|++++| +.++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~AD--~I~~ 152 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFAD--EIIL 152 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhCC--EEEE
Confidence 4566899999998888889999999996 6788888889999998775 7999987754 799999999998 7899
Q ss_pred ecCceeEEeec
Q 027632 210 FLAWFLLVIFV 220 (221)
Q Consensus 210 lPnS~~MIh~~ 220 (221)
.|.+.+.++-+
T Consensus 153 ~p~G~v~~~G~ 163 (584)
T TIGR00705 153 NPMGSVDLHGF 163 (584)
T ss_pred CCCceEEeece
Confidence 99999887643
No 33
>PRK10949 protease 4; Provisional
Probab=97.49 E-value=0.00031 Score=70.12 Aligned_cols=85 Identities=15% Similarity=0.015 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHH-HHHHHHHHhcC---CCeEEEEcceechHHHHHHhcCCCCcEE
Q 027632 133 DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG-MAIFDTIRHIR---PDVSTVCVGLAASMGAFLLSAGTKGKYL 208 (221)
Q Consensus 133 d~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aG-laIYDtmr~i~---~~V~Tv~~GlAASmAa~IlaAGdkgkR~ 208 (221)
+.....++.+|.....++..+.|.|.||+|||...+. ..|+++|+..+ +||+++ ...+++.+++|++++| +.+
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD--~I~ 170 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFAN--KIY 170 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCC--EEE
Confidence 3445678888988888888999999999999876655 78999998775 689987 5555789999999998 789
Q ss_pred eecCceeEEeec
Q 027632 209 CFLAWFLLVIFV 220 (221)
Q Consensus 209 AlPnS~~MIh~~ 220 (221)
+.|.+.+.++-+
T Consensus 171 l~P~G~v~~~G~ 182 (618)
T PRK10949 171 LSPQGVVDLHGF 182 (618)
T ss_pred ECCCceEEEeee
Confidence 999999888754
No 34
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=97.45 E-value=0.00074 Score=55.59 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=65.8
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHH-----------------HHHHHHHHHHhcCCCeEEEEcc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT-----------------AGMAIFDTIRHIRPDVSTVCVG 189 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~-----------------aGlaIYDtmr~i~~~V~Tv~~G 189 (221)
++.++.+.+.+.|..++.++..+-|.|.-+ |.|+++. ....++..|..++.||.+.+.|
T Consensus 23 ~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G 102 (195)
T cd06558 23 LSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG 102 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 567788888888888776554554444443 4455543 2245667777888999999999
Q ss_pred eechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.|.+.|..+++++| .|++.+++.|-+.+
T Consensus 103 ~a~g~G~~la~~~D--~~i~~~~~~~~~pe 130 (195)
T cd06558 103 AALGGGLELALACD--IRIAAEDAKFGLPE 130 (195)
T ss_pred eeecHHHHHHHhCC--EEEecCCCEEechh
Confidence 99999999999998 89999998887654
No 35
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=97.23 E-value=0.0021 Score=57.42 Aligned_cols=97 Identities=20% Similarity=0.164 Sum_probs=75.1
Q ss_pred hcCCcE--EEEcCccChhHHHHHHHHHhcccccCCCCceE-EEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHH
Q 027632 119 LFQHRI--IRCGGPVEDDMANIIVAQLLYLDAVDPNKDII-MYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMG 195 (221)
Q Consensus 119 L~~~RI--IfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~-LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmA 195 (221)
.++.|. |.+.+++-+.-+....+.|..- ....-++ +.+|||||+|..++.+-..|+..+-++..--..+|+|..
T Consensus 71 ~~dgr~l~VvVse~~a~~da~sal~~lir~---~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaC 147 (245)
T COG3904 71 TLDGRQLPVVVSEPGANVDAASALGRLIRK---AGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASAC 147 (245)
T ss_pred hccCceeeEEEcCCCCCccHHHHHHHHHhc---cCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccc
Confidence 355564 6667777665455555555431 2222334 678999999999999999999999888888889999999
Q ss_pred HHHHhcCCCCcEEeecCceeEEeec
Q 027632 196 AFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 196 a~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.++|++|. +|++=|.+.+-+|-+
T Consensus 148 pl~fagGv--rRvve~~ayiGVHq~ 170 (245)
T COG3904 148 PLMFAGGV--RRVVEDFAYIGVHQI 170 (245)
T ss_pred hhhhhcce--eeeecccceeeeeec
Confidence 99999996 899999999999965
No 36
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=96.96 E-value=0.0073 Score=52.81 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=61.6
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHH--------------HHHHHHHHHHhcCCCeEEEEcceec
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVT--------------AGMAIFDTIRHIRPDVSTVCVGLAA 192 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~--------------aGlaIYDtmr~i~~~V~Tv~~GlAA 192 (221)
++.++.+.+.+.+..++.++..+-|.|. .=|.|+++. ....+++.|..++.||.+.+.|.|.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 108 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAV 108 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 6667777777777666654333333332 113334432 1235677788889999999999999
Q ss_pred hHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 193 SMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 193 SmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+.|..|++++| -|++.+++.|-+.++
T Consensus 109 GgG~~lal~cD--~ria~~~a~f~~pe~ 134 (259)
T PRK06688 109 GVGVSLALACD--LVYASESAKFSLPFA 134 (259)
T ss_pred cHHHHHHHhCC--EEEecCCCEecCchh
Confidence 99999999999 799999998876543
No 37
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=96.87 E-value=0.0091 Score=52.43 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.++..|..++.||.+.+.|.|.+.|..|++++| -|++.+++.|-+.++
T Consensus 89 ~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~ 136 (260)
T PRK07511 89 DWIRAIRAFPKPVIAAVEGAAAGAGFSLALACD--LLVAARDAKFVMAYV 136 (260)
T ss_pred HHHHHHHcCCCCEEEEECCeeehHHHHHHHhCC--EEEeeCCCEEecccc
Confidence 356677788999999999999999999999999 899999998876654
No 38
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=96.76 E-value=0.014 Score=51.13 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=61.7
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH------------HHHHHHHHHhcCCCeEEEEcceechH
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------GMAIFDTIRHIRPDVSTVCVGLAASM 194 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a------------GlaIYDtmr~i~~~V~Tv~~GlAASm 194 (221)
++.++.+.+.+.+..++.++..+-|.|.= =|.|+++.. ...++..|..++.||.+.+.|.|.++
T Consensus 24 l~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 103 (248)
T PRK06072 24 LNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGA 103 (248)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence 67777888887777776543333232211 134455432 12345567788899999999999999
Q ss_pred HHHHHhcCCCCcEEeecCceeEEeec
Q 027632 195 GAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 195 Aa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
|..|++++| -|++.+++.|-+.++
T Consensus 104 G~~lal~cD--~~ia~~~a~f~~~~~ 127 (248)
T PRK06072 104 CIGIALSTD--FKFASRDVKFVTAFQ 127 (248)
T ss_pred HHHHHHhCC--EEEEcCCCEEecchh
Confidence 999999998 799999998876543
No 39
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=96.76 E-value=0.015 Score=51.84 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=61.4
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH-------------------HHHHHHHHhcCCCeEEEE
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC 187 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG-------------------laIYDtmr~i~~~V~Tv~ 187 (221)
++.++...+.+.|..++.++..+-|.|.=+ |-|+++..- ..+++.|..++.||.+.+
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 120 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAV 120 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 666777777777766664332332222100 334444321 245677888899999999
Q ss_pred cceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.|.|.+.|.-|++++| -|++.+++.|-+.++
T Consensus 121 ~G~a~GgG~~LalacD--~ria~~~a~f~~pe~ 151 (277)
T PRK08258 121 DGVCAGAGAILAMASD--LRLGTPSAKTAFLFT 151 (277)
T ss_pred CCeeehHHHHHHHhCC--EEEecCCCEEecccc
Confidence 9999999999999999 799999999877654
No 40
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=96.65 E-value=0.017 Score=51.09 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=41.5
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+++.|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+.++
T Consensus 100 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~ 146 (272)
T PRK06210 100 RYHFLTALRKPVIAAINGACAGIGLTHALMCD--VRFAADGAKFTTAFA 146 (272)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhCC--EEEEeCCCEEechHH
Confidence 45678888999999999999999999999999 799999999876543
No 41
>PRK05869 enoyl-CoA hydratase; Validated
Probab=96.63 E-value=0.021 Score=49.55 Aligned_cols=91 Identities=16% Similarity=0.076 Sum_probs=64.6
Q ss_pred EEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEEeCC------CCCHHH---------------HHHHHHHHHhc
Q 027632 125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTA---------------GMAIFDTIRHI 179 (221)
Q Consensus 125 IfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP------GGsV~a---------------GlaIYDtmr~i 179 (221)
|.|+.+ ++.++...+.+.|..++.++..+-|.| .+. |+++.. ...+++.|..+
T Consensus 21 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl--tg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (222)
T PRK05869 21 LLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVIL--YGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAI 98 (222)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence 445544 667777778777777775443343332 333 344322 12466778888
Q ss_pred CCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
+.||.+.+.|.|..+|..|++++| .|++.+++.|-+-+
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe 136 (222)
T PRK05869 99 PKPTVAAITGYALGAGLTLALAAD--WRVSGDNVKFGATE 136 (222)
T ss_pred CCCEEEEEcCEeecHHHHHHHhCC--EEEecCCCEEcCch
Confidence 999999999999999999999999 79999998876544
No 42
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=96.53 E-value=0.022 Score=50.06 Aligned_cols=88 Identities=8% Similarity=0.011 Sum_probs=59.8
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEcceech
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------GlaIYDtmr~i~~~V~Tv~~GlAAS 193 (221)
++.++.+.+.+.+..++.++..+-|.|.= =|.|+++.. ...+++.|..++.||.+.+.|.|.+
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALG 105 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence 56666666666666655433222222210 133444321 1245677888999999999999999
Q ss_pred HHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 194 MGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 194 mAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.|.-|++++| -|++.+++.|.+-++
T Consensus 106 gG~~lalacD--~~ia~~~a~f~~pe~ 130 (255)
T PRK09674 106 AGCELALLCD--IVIAGENARFGLPEI 130 (255)
T ss_pred HHHHHHHhCC--EEEecCCCEEeCchh
Confidence 9999999999 799999998876553
No 43
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=96.53 E-value=0.02 Score=50.40 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.+++.|..++.||.+.+.|.|.++|.-|++++| -|++.+++.|-+.+
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~~e 140 (266)
T PRK05981 94 PFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGD--LILCARSAYFLQAF 140 (266)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEecCCCEEechH
Confidence 366778888999999999999999999999999 79999998886544
No 44
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=96.53 E-value=0.023 Score=49.97 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=62.6
Q ss_pred EEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH-----------------HHHHHHHHHhc
Q 027632 125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-----------------GMAIFDTIRHI 179 (221)
Q Consensus 125 IfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a-----------------GlaIYDtmr~i 179 (221)
|.|+.+ ++.++...+.+.|..++.++..+-|.|.=+ |.|+++.+ ...+++.|..+
T Consensus 17 itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (257)
T PRK06495 17 VTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIREC 96 (257)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhC
Confidence 455554 666777777777776654433332222111 23333321 12356677888
Q ss_pred CCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+.||.+.+.|.|.++|.-|++++| -|++.+++.|-+-++
T Consensus 97 ~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~ 135 (257)
T PRK06495 97 AKPVIAAVNGPALGAGLGLVASCD--IIVASENAVFGLPEI 135 (257)
T ss_pred CCCEEEEECCeeehhHHHHHHhCC--EEEecCCCEeeChhh
Confidence 999999999999999999999999 799999998866543
No 45
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=96.50 E-value=0.024 Score=50.04 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=41.2
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
+++.|+.+++||.+.+.|.|.+.|.-|++++| -|++.+++.|-+-+
T Consensus 92 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~pe 137 (262)
T PRK07468 92 MLKALNDLPKPLIGRIQGQAFGGGVGLISVCD--VAIAVSGARFGLTE 137 (262)
T ss_pred HHHHHHcCCCCEEEEECCEEEhHHHHHHHhCC--EEEEeCCCEEeCch
Confidence 57788899999999999999999999999999 79999999876544
No 46
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=96.50 E-value=0.026 Score=49.49 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.++..|+.+++||.+.+.|.|..+|..|++++| -|++.+++.|-+-++
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD--~ria~~~a~f~~pe~ 135 (251)
T PRK06023 88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCD--LTFASPRSLFRTPFV 135 (251)
T ss_pred HHHHHHHhCCCCEEEEeCCceecHHHHHHHhCC--EEEEeCCCEecCccc
Confidence 456788888999999999999999999999999 899999998876543
No 47
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=96.49 E-value=0.023 Score=49.90 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=60.4
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe------CCCCCHHHH----------------------HHHHHHHHhcCCC
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTAG----------------------MAIFDTIRHIRPD 182 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN------SPGGsV~aG----------------------laIYDtmr~i~~~ 182 (221)
++.++.+.+.+.|..++.++..+-|.| . |.|+++..- ..+++.|+.++.|
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp 104 (262)
T PRK07509 27 LDFAMFEELIATIKRLKKDRGIRAVIL--SGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVP 104 (262)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEE--ECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 667777777777777665433332222 3 334443310 1134556788999
Q ss_pred eEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 183 VSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 183 V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
|.+.+.|.|.++|.-|++++| -|++.+++.|-+.++
T Consensus 105 vIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~ 140 (262)
T PRK07509 105 VIAALEGVCFGGGLQIALGAD--IRIAAPDTKLSIMEA 140 (262)
T ss_pred EEEEECCeeecchHHHHHhCC--EEEecCCCEeecchh
Confidence 999999999999999999999 799999998876553
No 48
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=96.46 E-value=0.03 Score=50.55 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=67.1
Q ss_pred CCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHH-------HHHHHHHHH---hcCCCeEEEEcce
Q 027632 121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTIR---HIRPDVSTVCVGL 190 (221)
Q Consensus 121 ~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~a-------GlaIYDtmr---~i~~~V~Tv~~Gl 190 (221)
++++...+|-++.+-......-+..-+. -.-||.-.+||||..+.. +..+...+. ..+.|+.+++.|-
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R~~~lA~~--~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALRLMKQAEK--FGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4456667788888866655443332222 257999999999986421 234555444 4468999999999
Q ss_pred echHHHHHHhcCCCCcEEeecCceeEE
Q 027632 191 AASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 191 AASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
|.|.|++.++.+| ..+++|++.+.+
T Consensus 147 ~~gGgA~a~~~~D--~v~m~~~a~~~v 171 (256)
T PRK12319 147 GGSGGALALAVAD--QVWMLENTMYAV 171 (256)
T ss_pred cCcHHHHHhhcCC--EEEEecCceEEE
Confidence 9999999998887 789999998765
No 49
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.46 E-value=0.018 Score=53.57 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=66.4
Q ss_pred CCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHH-------HHHHHHHH---HhcCCCeEEEEcce
Q 027632 121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTI---RHIRPDVSTVCVGL 190 (221)
Q Consensus 121 ~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~a-------GlaIYDtm---r~i~~~V~Tv~~Gl 190 (221)
++++-..+|.++++-......-+..-+. -.-||.-++|+||..+.. +.+|...+ -....|+.+++.|-
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R~m~lA~~--f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALRLMKMAER--FKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 4555566687888766655443332222 257999999999977322 33455544 45568999999999
Q ss_pred echHHHHHHhcCCCCcEEeecCceeEE
Q 027632 191 AASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 191 AASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
|+|+|++.++.+| ..+++||+.+-+
T Consensus 200 ggsGGAla~~~aD--~v~m~~~a~~sV 224 (316)
T TIGR00513 200 GGSGGALAIGVGD--KVNMLEYSTYSV 224 (316)
T ss_pred cccHHHhhhccCC--EEEEecCceEEe
Confidence 9999999887787 789999998765
No 50
>PLN02600 enoyl-CoA hydratase
Probab=96.43 E-value=0.028 Score=49.35 Aligned_cols=87 Identities=11% Similarity=0.091 Sum_probs=59.1
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH---------------HHHHHHHHHhcCCCeEEEEcce
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL 190 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a---------------GlaIYDtmr~i~~~V~Tv~~Gl 190 (221)
++.++.+.+.+.+..++.++..+-|.|.=. |.|+++.. ...+++.|..+++||.+.+.|.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 566677777777666664433332222110 22344422 1234566778899999999999
Q ss_pred echHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 191 AASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 191 AASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
|.++|.-|.+++| -|++.+++.|.+-+
T Consensus 99 a~GgG~~lala~D--~~ia~~~a~f~~pe 125 (251)
T PLN02600 99 ALGGGLELALSCD--LRICGEEAVFGLPE 125 (251)
T ss_pred ecchhHHHHHhCC--EEEeeCCCEEeCcc
Confidence 9999999999999 79999999886543
No 51
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=96.41 E-value=0.027 Score=49.61 Aligned_cols=45 Identities=20% Similarity=0.067 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.++..|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~ 129 (261)
T PRK03580 85 AGLTEIFDLDKPVIAAVNGYAFGGGFELALAAD--FIVCADNASFAL 129 (261)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHHCC--EEEecCCCEEeC
Confidence 356678888999999999999999999999999 799999988754
No 52
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=96.40 E-value=0.021 Score=49.27 Aligned_cols=85 Identities=12% Similarity=0.007 Sum_probs=65.9
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEeCC------CCCH---------------HHHHHHHHHHHhcCCCeEEEEcc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSV---------------TAGMAIFDTIRHIRPDVSTVCVG 189 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP------GGsV---------------~aGlaIYDtmr~i~~~V~Tv~~G 189 (221)
++.++.+.+...|..++.++..+ .+.|.+. |+++ .....++..|..++.||.+.+.|
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 67888888999888888765445 3444443 3443 33446788888999999999999
Q ss_pred eechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.|.+.|..+++++| -|++.+++.|-+-+
T Consensus 100 ~a~GgG~~lala~D--~~ia~~~a~f~~pe 127 (245)
T PF00378_consen 100 HAVGGGFELALACD--FRIAAEDAKFGFPE 127 (245)
T ss_dssp EEETHHHHHHHHSS--EEEEETTTEEETGG
T ss_pred cccccccccccccc--eEEeecccceeeee
Confidence 99999999999998 89999999876543
No 53
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=96.40 E-value=0.026 Score=50.85 Aligned_cols=47 Identities=21% Similarity=0.025 Sum_probs=41.6
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+++.|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+.++
T Consensus 105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~ 151 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMD--IRLASTAARFGFVFG 151 (296)
T ss_pred HHHHHHhCCCCEEEEECCeeehHhHHHHHhCC--EEEeeCCCEEecchh
Confidence 56678888999999999999999999999999 799999998876553
No 54
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=96.39 E-value=0.029 Score=49.44 Aligned_cols=86 Identities=14% Similarity=0.070 Sum_probs=60.8
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH---------------HHHHHHHHHhcCCCeEEEEcce
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL 190 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a---------------GlaIYDtmr~i~~~V~Tv~~Gl 190 (221)
++.++.+.+.+.|..++.++..+-|.|.=+ |.|+++.. ...+++.|..++.||.+.+.|.
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 110 (256)
T PRK06143 31 LGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGW 110 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 677777888887777765433333333111 23344321 1235677788899999999999
Q ss_pred echHHHHHHhcCCCCcEEeecCceeEEe
Q 027632 191 AASMGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 191 AASmAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
|.+.|.-|++++| -|++.+++.|-+=
T Consensus 111 a~GgG~~lalacD--~~ia~~~a~f~~p 136 (256)
T PRK06143 111 CLGGGLELAAACD--LRIAAHDAQFGMP 136 (256)
T ss_pred EeehhHHHHHhCC--EEEecCCCEEeCC
Confidence 9999999999999 7999999988653
No 55
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=96.38 E-value=0.031 Score=49.75 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=39.8
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
+++.|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+-+
T Consensus 101 ~~~~l~~~~kPvIaav~G~a~GgG~~LalacD--~ria~~~a~f~~pe 146 (276)
T PRK05864 101 VILALRRLHQPVIAAVNGPAIGGGLCLALAAD--IRVASSSAYFRAAG 146 (276)
T ss_pred HHHHHHhCCCCEEEEECCEeehhHHHHHHhCC--EEEeeCCCEecCcc
Confidence 45667788999999999999999999999998 79999998876533
No 56
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=96.36 E-value=0.027 Score=52.60 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=64.7
Q ss_pred CCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHH-------HHHHHH---HHHhcCCCeEEEEcce
Q 027632 121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFD---TIRHIRPDVSTVCVGL 190 (221)
Q Consensus 121 ~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~a-------GlaIYD---tmr~i~~~V~Tv~~Gl 190 (221)
++++-..+|-++++.......-+..-+. -.-||.-.|++||..+.. +.+|.. +|-..+.|+.+++.|-
T Consensus 122 ~e~~~~~~G~~~peg~rKa~R~m~lA~~--f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe 199 (319)
T PRK05724 122 KEKIRRNFGMPRPEGYRKALRLMKMAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE 199 (319)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 3444455677777765555443332222 257999999999965421 224444 4446678999999999
Q ss_pred echHHHHHHhcCCCCcEEeecCceeEE
Q 027632 191 AASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 191 AASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
|.|.|++.++.+| ..+++|++.+-+
T Consensus 200 g~sGGAla~~~aD--~v~m~~~A~~sv 224 (319)
T PRK05724 200 GGSGGALAIGVGD--RVLMLEYSTYSV 224 (319)
T ss_pred ccHHHHHHHhccC--eeeeecCceEee
Confidence 9999999888887 689999998754
No 57
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=96.36 E-value=0.03 Score=49.17 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=61.0
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEeCCC-------CCHHH---------------HHHHHHHHHhcCCCeEEEEc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSVTA---------------GMAIFDTIRHIRPDVSTVCV 188 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG-------GsV~a---------------GlaIYDtmr~i~~~V~Tv~~ 188 (221)
++.++...+.+.+..++.++..+- +.|.+.| +++.. ...+++.|..+++||.+.+.
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~--vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVYA--VILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEE--EEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 667777777777766664332232 2233433 33321 12466778888999999999
Q ss_pred ceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
|.|.+.|.-|++++| -|++.+++.|.+-++
T Consensus 106 G~a~GgG~~lal~cD--~~va~~~a~f~~pe~ 135 (260)
T PRK05809 106 GFALGGGCELSMACD--IRIASEKAKFGQPEV 135 (260)
T ss_pred CeeecHHHHHHHhCC--EEEeeCCCEEeCccc
Confidence 999999999999999 799999998876553
No 58
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=96.35 E-value=0.033 Score=49.11 Aligned_cols=94 Identities=16% Similarity=0.039 Sum_probs=64.3
Q ss_pred EEEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH------------HHHHHHHHHhcCCCe
Q 027632 124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------GMAIFDTIRHIRPDV 183 (221)
Q Consensus 124 IIfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a------------GlaIYDtmr~i~~~V 183 (221)
+|.|+.+ ++.++.+.+.+.|..++.++..+-|.|.=+ |.|+++.+ ...++..|..++.||
T Consensus 13 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 92 (251)
T TIGR03189 13 RLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPI 92 (251)
T ss_pred EEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence 3555555 777778888887777765443332222111 33444432 113555677889999
Q ss_pred EEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 184 STVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 184 ~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.+.+.|.|.++|.-|.+++| -|++.+++.|-+=+
T Consensus 93 Iaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe 126 (251)
T TIGR03189 93 LVAVRGQCLGGGLEVAAAGN--LMFAAPDAKLGQPE 126 (251)
T ss_pred EEEecCeeeeHHHHHHHhCC--EEEEcCCCEEeCch
Confidence 99999999999999999999 79999998876533
No 59
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.32 E-value=0.022 Score=58.30 Aligned_cols=64 Identities=22% Similarity=0.422 Sum_probs=51.8
Q ss_pred CCceEEEEeCCCCCHH-------HHHHHHHHHH---hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 152 NKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 152 ~kdI~LyINSPGGsV~-------aGlaIYDtmr---~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.-||.-+|++||..+. .+.+|...+. ....|+.+++.|-|+|+|++.++.|| ..+++|++.+-+
T Consensus 242 gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD--~VlMle~A~~sV 315 (762)
T PLN03229 242 GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCAN--KLLMLENAVFYV 315 (762)
T ss_pred CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCC--EEEEecCCeEEe
Confidence 5799999999997752 3445655555 55689999999999999999999988 689999998654
No 60
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=96.32 E-value=0.038 Score=48.67 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=58.4
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE-----eCCCCCHHH--------------HHHHHHHHHhcCCCeEEEEccee
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGLA 191 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-----NSPGGsV~a--------------GlaIYDtmr~i~~~V~Tv~~GlA 191 (221)
++.++.+.+.+.|..++.++..+-|.|.= =|.||++.+ ...+++.|..++.||.+.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA 105 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 56666666766666665433333222211 123444432 12356778888999999999999
Q ss_pred chHHHHHHhcCCCCcEEeecCceeEE
Q 027632 192 ASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 192 ASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.++|.-|++++| -|++.+++.|-+
T Consensus 106 ~GgG~~lal~cD--~~ia~~~a~f~~ 129 (256)
T TIGR03210 106 IGGGNVLVTICD--LTIASEKAQFGQ 129 (256)
T ss_pred ehhhHHHHHhCC--EEEEeCCCEEec
Confidence 999999999999 799999988865
No 61
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=96.31 E-value=0.045 Score=48.55 Aligned_cols=85 Identities=15% Similarity=-0.009 Sum_probs=60.4
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEcceech
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------GlaIYDtmr~i~~~V~Tv~~GlAAS 193 (221)
++.++.+.+.+.|..++.++..+-|.|.= =|.|+++.. ...+++.|..+++||.+.+.|.|.+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 107 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVT 107 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 66777777777777666543333233211 134455432 1346778889999999999999999
Q ss_pred HHHHHHhcCCCCcEEeecCceeEE
Q 027632 194 MGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 194 mAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.|.-|++++| -|++.+++.|-+
T Consensus 108 gG~~lalacD--~~ia~~~a~f~~ 129 (258)
T PRK06190 108 GGLELALACD--ILIASERARFAD 129 (258)
T ss_pred HHHHHHHhCC--EEEEeCCCEEEC
Confidence 9999999998 799999988754
No 62
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=96.31 E-value=0.033 Score=49.01 Aligned_cols=85 Identities=13% Similarity=0.017 Sum_probs=59.6
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEeCC-------CCCHHH---------------HHHHHHHHHhcCCCeEEEEc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-------GGSVTA---------------GMAIFDTIRHIRPDVSTVCV 188 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP-------GGsV~a---------------GlaIYDtmr~i~~~V~Tv~~ 188 (221)
++.++...+.+.+..++.++..+-|. |.+- |+++.. ...+++.|..++.||.+.+.
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vrvvV--l~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKDVYALV--ITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEE--EECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 66677777777776666543333222 2332 344321 12356678888999999999
Q ss_pred ceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
|.|.+.|.-|++++| -|++.+++.|-+-+
T Consensus 104 G~a~GgG~~lalacD--~~ia~~~a~f~~pe 132 (258)
T PRK09076 104 GYAMGGGLECALACD--IRIAEEQAQMALPE 132 (258)
T ss_pred CEEecHHHHHHHhCC--EEEecCCCEeeCcc
Confidence 999999999999998 79999999886544
No 63
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=96.30 E-value=0.021 Score=50.07 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=60.6
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH------------HHHHHHHHhcCCCeEEEEcceechH
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAASM 194 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG------------laIYDtmr~i~~~V~Tv~~GlAASm 194 (221)
++.++.+++.+.|..++.++..+-|.|.=+ |.|+++.+- ..++..|..++.||.+.+.|.|..+
T Consensus 29 l~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGG 108 (249)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceech
Confidence 566677777777666664332332322210 334543321 2577788889999999999999999
Q ss_pred HHHHHhcCCCCcEEeecCceeEEee
Q 027632 195 GAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 195 Aa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
|..|++++| -|++.+++.|-+.+
T Consensus 109 G~~lal~cD--~~ia~~~a~f~~pe 131 (249)
T PRK07110 109 GLVLGLYAD--IVVLSRESVYTANF 131 (249)
T ss_pred HHHHHHhCC--EEEEeCCCEecCch
Confidence 999999999 79999998876544
No 64
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=96.23 E-value=0.038 Score=48.85 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=59.0
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe------CCCCCHHH--------------HHHHHHHHHhcCCCeEEEEcce
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGL 190 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN------SPGGsV~a--------------GlaIYDtmr~i~~~V~Tv~~Gl 190 (221)
++.++.+.+.+.+..++.++ .+-|.|.=+ |.|+++.. -..+++.|+.++.||.+.+.|.
T Consensus 28 l~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~ 106 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGS 106 (261)
T ss_pred CCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecE
Confidence 67777777777777666432 333332211 23444422 1235677888899999999999
Q ss_pred echHHHHHHhcCCCCcEEeecCceeEE
Q 027632 191 AASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 191 AASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
|..+|.-|++++| -|++.+.+.|-+
T Consensus 107 a~GgG~~lalacD--~~ia~~~a~f~~ 131 (261)
T PRK11423 107 VWGGAFELIMSCD--LIIAASTSTFAM 131 (261)
T ss_pred EechHHHHHHhCC--EEEecCCCEecC
Confidence 9999999999998 799999988764
No 65
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=96.22 E-value=0.044 Score=48.31 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=59.4
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEcceech
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------GlaIYDtmr~i~~~V~Tv~~GlAAS 193 (221)
++.++.+.+.+.|..++.++..+-|.|.= =|.|+++.. ...+++.|..+++||.+.+.|.|.+
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 111 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG 111 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence 67777777777777666443333332211 133444422 1235667778899999999999999
Q ss_pred HHHHHHhcCCCCcEEeecCceeEEe
Q 027632 194 MGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 194 mAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
.|.-|++++| -|++.+++.|-+=
T Consensus 112 gG~~lalacD--~ria~~~a~f~~p 134 (261)
T PRK08138 112 GGCELAMHAD--IIVAGESASFGQP 134 (261)
T ss_pred HHHHHHHhCC--EEEecCCCEeeCc
Confidence 9999999998 7899999887653
No 66
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=96.21 E-value=0.031 Score=49.73 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.+++.|..++.||.+.+.|.|.++|..|++++| -|++.+++.|-+-+
T Consensus 102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe 148 (275)
T PLN02664 102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTACD--IRYCSEDAFFSVKE 148 (275)
T ss_pred HHHHHHHhCCCCEEEEECCccccchHHHHHhCC--EEEecCCCEeccHH
Confidence 356678888999999999999999999999999 79999999886543
No 67
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=96.20 E-value=0.036 Score=48.50 Aligned_cols=86 Identities=10% Similarity=0.112 Sum_probs=60.7
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHH----------HHHHHHHHHhcCCCeEEEEcceechHHH
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA----------GMAIFDTIRHIRPDVSTVCVGLAASMGA 196 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~a----------GlaIYDtmr~i~~~V~Tv~~GlAASmAa 196 (221)
++.++..++.+.+..++. +..+-|.|. .=|.|+++.. ...+++.|..++.||.+.+.|.|.++|.
T Consensus 24 l~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~ 102 (243)
T PRK07854 24 LNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGL 102 (243)
T ss_pred CCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccHH
Confidence 788888888888777663 223322221 1134455431 1235667778899999999999999999
Q ss_pred HHHhcCCCCcEEeecCceeEEee
Q 027632 197 FLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 197 ~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.|++++| -|++.+++.|-+=+
T Consensus 103 ~lal~cD--~~ia~~~a~f~~pe 123 (243)
T PRK07854 103 QLAMACD--LRVVAPEAYFQFPV 123 (243)
T ss_pred HHHHhCC--EEEEcCCCEEeccc
Confidence 9999998 79999998876533
No 68
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=96.19 E-value=0.043 Score=48.12 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=59.3
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH-------------H-----HHHHHHHHhcCCCeEEEEc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------G-----MAIFDTIRHIRPDVSTVCV 188 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a-------------G-----laIYDtmr~i~~~V~Tv~~ 188 (221)
++.++.+++.+.|..++.++ .+-|.|.=+ |.|+++.+ . ..+++.|..++.||.+.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 101 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVN 101 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 66777777777777776543 433333211 23344321 0 1245678888999999999
Q ss_pred ceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632 189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
|.|.+.|.-|++++| -|++.+++.|-+-
T Consensus 102 G~a~GgG~~lala~D--~ria~~~a~f~~p 129 (256)
T TIGR02280 102 GVAAGAGANLALACD--IVLAAESARFIQA 129 (256)
T ss_pred CeeehHHHHHHHhCC--EEEecCCCEEeCh
Confidence 999999999999999 7999999887643
No 69
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.18 E-value=0.041 Score=52.64 Aligned_cols=93 Identities=11% Similarity=-0.009 Sum_probs=66.4
Q ss_pred cEEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH------------H----HHH---H
Q 027632 123 RIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------M----AIF---D 174 (221)
Q Consensus 123 RIIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG------------l----aIY---D 174 (221)
++|.|+-+ ++.++.+.+...|..++.++..+-|.|.=+ |-||++.+- . .+| .
T Consensus 53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 132 (407)
T PLN02851 53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVY 132 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 57888776 888999999999998876543432222211 346665321 1 122 2
Q ss_pred HHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 175 tmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.|..+++||.+.+.|.|.++|.-|.++|| -|++.+++.|-.
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D--~rVate~a~fam 173 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPGM--FRVVTDKTVFAH 173 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhCC--EEEEeCCceEec
Confidence 34567899999999999999999999998 788888887754
No 70
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=96.17 E-value=0.031 Score=52.27 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=64.0
Q ss_pred cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHH-------HHHHHHHHH---HhcCCCeEEEEcceec
Q 027632 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTI---RHIRPDVSTVCVGLAA 192 (221)
Q Consensus 123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~-------aGlaIYDtm---r~i~~~V~Tv~~GlAA 192 (221)
++-..+|-++++-......-+. +... -.-||.-+|++||..+. .+.+|...+ -..+.|+.+++.|-++
T Consensus 127 ~~~~~~G~~~p~g~rKa~Rlm~-lA~~-f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGegg 204 (322)
T CHL00198 127 NVLRNFGMPSPGGYRKALRLMK-HANK-FGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGG 204 (322)
T ss_pred hhhhcCCCCCHHHHHHHHHHHH-HHHH-cCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCccc
Confidence 3333456677765555543333 2222 25799999999997642 233555543 4567899999999999
Q ss_pred hHHHHHHhcCCCCcEEeecCceeEEe
Q 027632 193 SMGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 193 SmAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
|+|++.++.+| ..++++|+.+.+.
T Consensus 205 sGGAlal~~aD--~V~m~e~a~~sVi 228 (322)
T CHL00198 205 SGGALGIGIGD--SIMMLEYAVYTVA 228 (322)
T ss_pred HHHHHhhhcCC--eEEEeCCeEEEec
Confidence 99999888887 7899999988653
No 71
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=96.12 E-value=0.063 Score=47.17 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=59.3
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHHH-------------------HHHHHHHHhcCCCeEEEE
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC 187 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~aG-------------------laIYDtmr~i~~~V~Tv~ 187 (221)
++.++.+.+.+.+..++ ++..+-|.|.= =|.|+++..- ..+++.|..+++||.+.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 106 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAV 106 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56667777777777766 44333333321 1333443210 124567788899999999
Q ss_pred cceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.|.|.++|.-|++++| -|++.+++.|.+-+
T Consensus 107 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe 136 (262)
T PRK08140 107 NGVAAGAGANLALACD--IVLAARSASFIQAF 136 (262)
T ss_pred CCeeehhHHHHHHhCC--EEEecCCCEEeccc
Confidence 9999999999999999 89999998876433
No 72
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=96.11 E-value=0.035 Score=53.72 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=60.4
Q ss_pred CccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHH-------HHHHHHHH---HhcCCCeEEEEcceechHHHHH
Q 027632 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTI---RHIRPDVSTVCVGLAASMGAFL 198 (221)
Q Consensus 129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~a-------GlaIYDtm---r~i~~~V~Tv~~GlAASmAa~I 198 (221)
|-++++-......-+..-+. -.-||.-+||+||..+.. +.+|...| -..+.|+.++++|-+.|+|++.
T Consensus 200 G~~~peGyRKAlR~mklAek--f~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla 277 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEK--FGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA 277 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence 55666655544433332222 257999999999976422 23555544 4556899999999999999999
Q ss_pred HhcCCCCcEEeecCceeEE
Q 027632 199 LSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 199 laAGdkgkR~AlPnS~~MI 217 (221)
++.|| ..+++||+.+.+
T Consensus 278 lg~aD--~VlMle~A~ysV 294 (431)
T PLN03230 278 IGCGN--RMLMMENAVYYV 294 (431)
T ss_pred hhcCC--EEEEecCCEEEe
Confidence 99887 789999998754
No 73
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=96.11 E-value=0.036 Score=49.10 Aligned_cols=47 Identities=19% Similarity=0.063 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.+++.|..++.||.+.+.|.|.++|.-|++++| -|++.+++.|-+-+
T Consensus 100 ~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe 146 (272)
T PRK06142 100 AAINAVADCRKPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVRE 146 (272)
T ss_pred HHHHHHHhCCCCEEEEecCccccchHHHHHhCC--EEEecCCCeecchh
Confidence 355667888999999999999999999999999 79999999886544
No 74
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=96.08 E-value=0.047 Score=48.16 Aligned_cols=47 Identities=15% Similarity=-0.038 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.+++.|..++.||.+.+.|.|.++|.-|++++| -|++.+++.|.+-+
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe 134 (259)
T TIGR01929 88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCD--LTIAAENARFGQTG 134 (259)
T ss_pred HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCC--EEEecCCCEecCcc
Confidence 456778888999999999999999999999999 79999998887644
No 75
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=96.08 E-value=0.039 Score=49.48 Aligned_cols=46 Identities=9% Similarity=-0.120 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
+++.|+.++.||.+.+.|.|.++|..|++++| -|++.+++.|-+-+
T Consensus 99 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~ria~~~a~f~~pe 144 (278)
T PLN03214 99 FLVRLLRSRLATVCAIRGACPAGGCAVSLCCD--YRLQTTEGTMGLNE 144 (278)
T ss_pred HHHHHHcCCCCEEEEEcCcccchHHHHHHhCC--EEEecCCCEecCcH
Confidence 45667888899999999999999999999999 79999998876543
No 76
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=96.08 E-value=0.045 Score=48.06 Aligned_cols=46 Identities=13% Similarity=-0.025 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
+++.|..+++||.+.+.|.|.++|.-|++++| -|++.+++.|.+=+
T Consensus 92 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe 137 (260)
T PRK05980 92 MTARLEAFPKPVIAAVNGLAFGGGCEITEAVH--LAIASERALFAKPE 137 (260)
T ss_pred HHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCC--EEEecCCCEecCcc
Confidence 56677788999999999999999999999998 79999999886543
No 77
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=96.06 E-value=0.068 Score=47.11 Aligned_cols=47 Identities=21% Similarity=0.113 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.+++.|..+++||.+.+.|.|.+.|.-|++++| -|++.+++.|-+=+
T Consensus 83 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe 129 (255)
T PRK08150 83 RVFDKIQYGRVPVIAALHGAVVGGGLELASAAH--IRVADESTYFALPE 129 (255)
T ss_pred HHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCC--EEEEeCCCEEeccc
Confidence 456778888999999999999999999999998 79999999886543
No 78
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=96.04 E-value=0.066 Score=47.50 Aligned_cols=47 Identities=6% Similarity=-0.140 Sum_probs=42.0
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
+++.|..++.||.+.+.|.|.++|.-|++++| -|++.+++.|.+.++
T Consensus 98 ~~~~i~~~~kPvIaav~G~a~GgG~~LalacD--~~ia~~~a~f~~pe~ 144 (269)
T PRK06127 98 AQAALADYAKPTIACIRGYCIGGGMGIALACD--IRIAAEDSRFGIPAA 144 (269)
T ss_pred HHHHHHhCCCCEEEEECCEEecHHHHHHHhCC--EEEeeCCCEeeCchh
Confidence 55678888999999999999999999999999 799999999887654
No 79
>PLN02888 enoyl-CoA hydratase
Probab=96.02 E-value=0.065 Score=47.57 Aligned_cols=86 Identities=19% Similarity=0.099 Sum_probs=58.9
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHHH------------HHHHHHHHhcCCCeEEEEcceechH
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAASM 194 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~aG------------laIYDtmr~i~~~V~Tv~~GlAASm 194 (221)
++.++...+.+.|..++.++..+-|.|.= =|-|+++... ..++..|..++.||.+.+.|.|.+.
T Consensus 34 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~Gg 113 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITA 113 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence 66777777777777666543333222210 0233444311 2345567888999999999999999
Q ss_pred HHHHHhcCCCCcEEeecCceeEEe
Q 027632 195 GAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 195 Aa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
|..|++++| -|++.+++.|.+=
T Consensus 114 G~~lal~cD--~ria~~~a~f~~p 135 (265)
T PLN02888 114 GFEIALACD--ILVASRGAKFIDT 135 (265)
T ss_pred HHHHHHhCC--EEEecCCCEecCc
Confidence 999999999 7999999887653
No 80
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=96.02 E-value=0.06 Score=47.72 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=58.6
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-----------------HHHHHHHHHhcCCCeEEEEcc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-----------------GMAIFDTIRHIRPDVSTVCVG 189 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-----------------GlaIYDtmr~i~~~V~Tv~~G 189 (221)
++.++...+.+.|..++.++..+-|.|.= =|.|+++.+ ...++..|..++.||.+.+.|
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG 115 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 67777777877777776543333332210 133344321 112345566778999999999
Q ss_pred eechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632 190 LAASMGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
.|.+.|..|++++| -|++.+++.|-+=
T Consensus 116 ~a~GgG~~lalacD--~ria~~~a~f~~p 142 (268)
T PRK07327 116 PAVGAGLVAALLAD--ISIAAKDARIIDG 142 (268)
T ss_pred eeeehhhHHHHhCC--EEEecCCCEEeCc
Confidence 99999999999998 7999999887653
No 81
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=96.02 E-value=0.044 Score=48.00 Aligned_cols=47 Identities=15% Similarity=-0.011 Sum_probs=40.9
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.+..|..++.||.+.+.|.|.++|.-|++++| -|++.+++.|-+.++
T Consensus 87 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~ 133 (249)
T PRK05870 87 GFLAVASCPLPTIAAVNGAAVGAGLNLALAAD--VRIAGPKALFDARFQ 133 (249)
T ss_pred HHHHHHhCCCCEEEEECCEeEchhHHHHHhCC--EEEEcCCCEEeCccc
Confidence 45567788999999999999999999999999 799999998876554
No 82
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=96.01 E-value=0.071 Score=46.77 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.+++.|..++.||.+.+.|.|.++|..|++++| -|++.+++.|.+
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~ 133 (255)
T PRK07260 89 EISFAIKQLPKPVIMCVDGAVAGAAANMAVAAD--FCIASTKTKFIQ 133 (255)
T ss_pred HHHHHHHcCCCCEEEEecCeeehhhHHHHHhCC--EEEEeCCCEEec
Confidence 355677888999999999999999999999999 799999998764
No 83
>PLN02921 naphthoate synthase
Probab=95.95 E-value=0.068 Score=49.44 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=61.4
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH----------------HHHHHHHHHhcCCCeEEEEcc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG 189 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a----------------GlaIYDtmr~i~~~V~Tv~~G 189 (221)
++.++.+.+.+.|..++.++..+-|.|.=+ |.||++.. ...+++.|+.++.||.+.+.|
T Consensus 91 l~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG 170 (327)
T PLN02921 91 FRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAG 170 (327)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 677888888888777765432222222110 34455432 022456778889999999999
Q ss_pred eechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.|.++|..|++++| -|++.+++.|-+.+
T Consensus 171 ~a~GGG~~LalacD--~riA~~~A~f~~pe 198 (327)
T PLN02921 171 YAVGGGHILHMVCD--LTIAADNAVFGQTG 198 (327)
T ss_pred EEecHHHHHHHhCC--EEEEeCCCEEeCcc
Confidence 99999999999999 79999999887644
No 84
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=95.92 E-value=0.053 Score=47.75 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.+++.|..+++||.+.+.|.|...|.-|++++| -|++.+++.|.+-++
T Consensus 94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~ 141 (266)
T PRK09245 94 RIPLALYNLEVPVIAAVNGPAIGAGCDLACMCD--IRIASETARFAESFV 141 (266)
T ss_pred HHHHHHHcCCCCEEEEECCEeecHHHHHHHhCC--EEEecCCCEEccccc
Confidence 356678888999999999999999999999999 899999998876554
No 85
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=95.85 E-value=0.075 Score=46.51 Aligned_cols=47 Identities=15% Similarity=0.000 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
.++..|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+-+
T Consensus 85 ~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe 131 (257)
T PRK07658 85 VTFERVEKFSKPVIAAIHGAALGGGLELAMSCH--IRFATESAKLGLPE 131 (257)
T ss_pred HHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCC--EEEecCCCcccCcc
Confidence 466778889999999999999999999999998 79999998876544
No 86
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=95.83 E-value=0.078 Score=46.64 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=60.4
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEeCCC-------CCHHH---------------HHHHHHHHHhcCCCeEEEEc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSVTA---------------GMAIFDTIRHIRPDVSTVCV 188 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG-------GsV~a---------------GlaIYDtmr~i~~~V~Tv~~ 188 (221)
++.++...+.+.+..++.++..+- +.|.+-| +++.. ...+++.|..++.||.+.+.
T Consensus 28 l~~~~~~~l~~al~~~~~d~~v~~--vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 28 LSLALLEELQNILTQINEEANVRV--VILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEE--EEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 677777778777777665432232 2233333 33321 12356677788999999999
Q ss_pred ceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
|.|.+.|.-|++++| -|++.+++.|-+-+
T Consensus 106 G~a~GgG~~lal~cD--~~ia~~~a~f~~pe 134 (260)
T PRK07657 106 GIALGGGLELALACD--FRIAAESASLGLTE 134 (260)
T ss_pred CEeechHHHHHHhCC--EEEeeCCCEEcCch
Confidence 999999999999999 89999999887644
No 87
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=95.82 E-value=0.099 Score=45.94 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
+++.|..+++||.+.+.|.|.++|.-|++++| -|++.+++.|-+=+
T Consensus 86 ~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe 131 (249)
T PRK07938 86 AFRAVYECAVPVIAAVHGFCLGGGIGLVGNAD--VIVASDDATFGLPE 131 (249)
T ss_pred HHHHHHhCCCCEEEEEcCEEeehHHHHHHhCC--EEEEeCCCEeeCcc
Confidence 55677788999999999999999999999999 79999998876533
No 88
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=95.76 E-value=0.079 Score=50.15 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=64.1
Q ss_pred EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHHH-------------------HHHHH
Q 027632 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------------AIFDT 175 (221)
Q Consensus 124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aGl-------------------aIYDt 175 (221)
+|.|+-+ ++.++...+.+.|..++.++..+-|.|.=+ |-||++.+-. .+...
T Consensus 21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~ 100 (381)
T PLN02988 21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYV 100 (381)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 4566554 778888889888888765443333322211 3356664311 12235
Q ss_pred HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
|..+++||.+.+.|.|.++|.-|.++|| .|++.+++.|-.
T Consensus 101 i~~~pKPvIa~v~G~a~GGG~~Lal~~D--~rvate~a~f~m 140 (381)
T PLN02988 101 MATYSKAQVSILNGIVMGGGAGVSVHGR--FRIATENTVFAM 140 (381)
T ss_pred HHHCCCCEEEEecCeEeehhhHHhhcCC--eEEEcCCcEEeC
Confidence 6778999999999999999999999998 799999887753
No 89
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=95.72 E-value=0.11 Score=46.88 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.++..|..+++||.+.+.|.|.+.|.-|++++| -|++.+++.|-+
T Consensus 118 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~~ias~~a~f~~ 162 (302)
T PRK08272 118 RGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCD--QVIAADDAKIGY 162 (302)
T ss_pred HHHHHHHhCCCCEEEEEccEeehhhHHHHHhCC--EEEEeCCCEecC
Confidence 356677888999999999999999999999999 789999887754
No 90
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=95.68 E-value=0.11 Score=45.57 Aligned_cols=48 Identities=17% Similarity=-0.011 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.++..|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+-++
T Consensus 90 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~ 137 (262)
T PRK05995 90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAACD--IAVAADHAVFCLSEV 137 (262)
T ss_pred HHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCC--EEEeeCCCEEeCccc
Confidence 355677788999999999999999999999999 799999998866443
No 91
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=95.66 E-value=0.094 Score=46.49 Aligned_cols=46 Identities=11% Similarity=-0.060 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
++..|+.+++||.+.+.|.|.+.|.-|++++| -|++.+++.|-+=+
T Consensus 93 ~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe 138 (265)
T PRK05674 93 LMYNLYRLKIPTLAVVQGAAFGGALGLISCCD--MAIGADDAQFCLSE 138 (265)
T ss_pred HHHHHHcCCCCEEEEEcCEEEechhhHhhhcC--EEEEeCCCEEeCcc
Confidence 45567778899999999999999999999998 79999998876533
No 92
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=95.64 E-value=0.11 Score=46.49 Aligned_cols=86 Identities=12% Similarity=0.022 Sum_probs=58.2
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------------HHHHHHHHHhcCCCeEEEE
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------------GMAIFDTIRHIRPDVSTVC 187 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------------GlaIYDtmr~i~~~V~Tv~ 187 (221)
++.++...+.+.|..++.++..+-|.|.= =|-|+++.. ...+++.|..++.||.+.+
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMV 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 66777777777666665433233222211 123344321 1234566778899999999
Q ss_pred cceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632 188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
.|.|.++|.-|++++| -|++.+++.|-+=
T Consensus 112 ~G~a~GgG~~lal~cD--~~ia~~~a~f~~p 140 (275)
T PRK09120 112 NGWCFGGGFSPLVACD--LAIAADEAQFGLS 140 (275)
T ss_pred cCEEechhHHHHHhCC--EEEEeCCcEecCC
Confidence 9999999999999999 7999999988653
No 93
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=95.64 E-value=0.13 Score=45.36 Aligned_cols=88 Identities=11% Similarity=-0.067 Sum_probs=57.6
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHHH------------HHHHHHHHhcCCCeEEEEcceech
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAAS 193 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~aG------------laIYDtmr~i~~~V~Tv~~GlAAS 193 (221)
++.++.+.+.+.|..++.++..+-|.|.=+ |.|+++..- +.-+..+..++.||.+.+.|.|.+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 107 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG 107 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence 566677777777776665433333333211 224444321 111122345678999999999999
Q ss_pred HHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 194 MGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 194 mAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.|.-|++++| -|++.+++.|-+-++
T Consensus 108 gG~~lalacD--~ria~~~a~f~~pe~ 132 (259)
T PRK06494 108 GGFELALACD--LIVAAENATFALPEP 132 (259)
T ss_pred HHHHHHHhCC--EEEEeCCCEEeCccc
Confidence 9999999998 799999998876543
No 94
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=95.62 E-value=0.11 Score=46.19 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.+++.|..++.||.+.+.|.|.++|.-|++++| -|++.+++.|-+
T Consensus 98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~ 142 (273)
T PRK07396 98 DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCD--LTIAADNAIFGQ 142 (273)
T ss_pred HHHHHHHhCCCCEEEEECCEEehHHHHHHHhCC--EEEeeCCcEEec
Confidence 356678888999999999999999999999998 799999988765
No 95
>PRK08139 enoyl-CoA hydratase; Validated
Probab=95.59 E-value=0.13 Score=45.72 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
+++.|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+-+
T Consensus 96 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe 141 (266)
T PRK08139 96 VMQAIVALPQPVIARVHGIATAAGCQLVASCD--LAVAADTARFAVPG 141 (266)
T ss_pred HHHHHHhCCCCEEEEECceeeHHHHHHHHhCC--EEEEeCCCEEeCcc
Confidence 55667888999999999999999999999998 79999999886543
No 96
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=95.59 E-value=0.087 Score=46.53 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
+++.|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+
T Consensus 94 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~ 137 (262)
T PRK06144 94 VLGALEQLRVPTIAAIAGACVGGGAAIAAACD--LRIATPSARFGF 137 (262)
T ss_pred HHHHHHhCCCCEEEEECCeeeehHHHHHHhCC--EEEecCCCEeec
Confidence 55667788999999999999999999999999 799999988754
No 97
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=95.53 E-value=0.15 Score=44.90 Aligned_cols=48 Identities=6% Similarity=-0.097 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.++..|..++.||.+.+.|.|.+.|..|++++| -|++.+++.|-+.++
T Consensus 87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~ 134 (255)
T PRK07112 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD--IVIADETAPFSLSEL 134 (255)
T ss_pred HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCC--EEEEcCCCEEeCchh
Confidence 356667778899999999999999999999999 799999998877654
No 98
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=95.51 E-value=0.093 Score=47.29 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
++..|+.++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD--~ria~e~a~f~~ 153 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCD--LIVASDDAFFSD 153 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCC--EEEeeCCCEecC
Confidence 44567888999999999999999999999999 799999988754
No 99
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=95.51 E-value=0.11 Score=45.54 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=38.9
Q ss_pred HHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 175 tmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.|+.++.||.+.+.|.|.+.|..|++++| -|++.+++.|-+.++
T Consensus 87 ~l~~~~kPvIAav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~ 130 (255)
T PRK06563 87 VGRRLSKPLVVAVQGYCLTLGIELMLAAD--IVVAADNTRFAQLEV 130 (255)
T ss_pred HHhcCCCCEEEEEcCeeecHHHHHHHhCC--EEEecCCCEEeChhh
Confidence 46778899999999999999999999999 799999998876543
No 100
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=95.50 E-value=0.069 Score=48.39 Aligned_cols=47 Identities=9% Similarity=-0.072 Sum_probs=41.0
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
++..|..+++||.+.+.|.|.+.|.-|++++| -|++.+++.|-+-++
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~A~f~~pe~ 150 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCAD--IVIASDDAVIGTPYS 150 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHCC--EEEEcCCcEEecccc
Confidence 45567888999999999999999999999999 799999998876553
No 101
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=95.49 E-value=0.12 Score=49.38 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=62.1
Q ss_pred EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHHH-------------------HHHHHH
Q 027632 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDT 175 (221)
Q Consensus 124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~aG-------------------laIYDt 175 (221)
+|.|+-+ ++.++...+.+.|..++.++..+-|.|.= =|-||++.+- ..++..
T Consensus 49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (401)
T PLN02157 49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYL 128 (401)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence 4455544 67777777777777766543333222221 1445665321 012345
Q ss_pred HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
|..+++||.+.+.|.|.+.|.-|.++|| -|++.+++.|-.
T Consensus 129 i~~~pkPvIA~v~G~a~GGG~~Lal~cD--~rvate~a~fa~ 168 (401)
T PLN02157 129 LGTYLKPHVAILNGVTMGGGTGVSIPGT--FRVATDRTIFAT 168 (401)
T ss_pred HHhCCCCEEEEEeCeEeehhHHHHHhCC--EEEEeCCCEEEC
Confidence 7788999999999999999999999998 799999888754
No 102
>PRK08321 naphthoate synthase; Validated
Probab=95.48 E-value=0.15 Score=46.18 Aligned_cols=44 Identities=23% Similarity=0.040 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEee-cCceeEE
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF-LAWFLLV 217 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~Al-PnS~~MI 217 (221)
+++.|..++.||.+.+.|.|...|.-|++++| -|++. +++.|-+
T Consensus 127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~ 171 (302)
T PRK08321 127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCD--LTLASREHARFKQ 171 (302)
T ss_pred HHHHHHcCCCCEEEEEcCeeehHHHHHHHhCC--EEEEecCCCEEEC
Confidence 44567788999999999999999999999998 78998 5787754
No 103
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=95.46 E-value=0.15 Score=44.80 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.++..|..++.||.+.+.|.|.++|.-|++++| -|++.+++.|-+
T Consensus 85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~ 129 (257)
T PRK05862 85 TNWEKVARIRKPVIAAVAGYALGGGCELAMMCD--IIIAADTAKFGQ 129 (257)
T ss_pred HHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCC--EEEEeCCCEEeC
Confidence 356678888999999999999999999999999 799999988764
No 104
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=95.46 E-value=0.1 Score=48.32 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
++..|..++.||.+.+.|.|.++|.-|++++| -|++.+++.|-+=+
T Consensus 92 ~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe 137 (342)
T PRK05617 92 LNALIARYPKPYIALMDGIVMGGGVGISAHGS--HRIVTERTKMAMPE 137 (342)
T ss_pred HHHHHHhCCCCEEEEEcCEEEccHhHHhhhCC--EEEEcCCCEeeCCc
Confidence 45667788899999999999999999999998 79999999886543
No 105
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=95.45 E-value=0.16 Score=44.43 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=54.9
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH-----------------HHHHHHHHHhcCCCeEEEEc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA-----------------GMAIFDTIRHIRPDVSTVCV 188 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a-----------------GlaIYDtmr~i~~~V~Tv~~ 188 (221)
++.++...+.+.+..++.++..+.+.|.-. |.|+++.. ...+++.|..++.||.+.+.
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~ 102 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT 102 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 666666667666666654322222222212 23444321 12245667788899999999
Q ss_pred ceechHHHHHHhcCCCCcEEeec-CceeEE
Q 027632 189 GLAASMGAFLLSAGTKGKYLCFL-AWFLLV 217 (221)
Q Consensus 189 GlAASmAa~IlaAGdkgkR~AlP-nS~~MI 217 (221)
|.|.++|..|++++| -|++.+ .+.|.+
T Consensus 103 G~a~GgG~~lalacD--~ria~~~~a~f~~ 130 (239)
T PLN02267 103 GHASAAGFILALSHD--YVLMRKDRGVLYM 130 (239)
T ss_pred CcchHHHHHHHHHCC--EEEecCCCCeEec
Confidence 999999999999998 788875 456544
No 106
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=95.28 E-value=0.16 Score=44.73 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
.++..|..++.||.+.+.|.|.++|.-|++++| -|++.+.+.|-+=
T Consensus 92 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~p 137 (260)
T PRK07827 92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGACD--IVVAGPESTFALT 137 (260)
T ss_pred HHHHHHHhCCCCEEEEEcCeeecchhhHHHhCC--EEEEcCCCEEeCc
Confidence 355667788999999999999999999999999 7999998877553
No 107
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=95.27 E-value=0.083 Score=46.29 Aligned_cols=89 Identities=13% Similarity=0.039 Sum_probs=64.6
Q ss_pred ccChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHH----------------HHHHHHHHhcCCCeEEEEcc
Q 027632 130 PVEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVG 189 (221)
Q Consensus 130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aG----------------laIYDtmr~i~~~V~Tv~~G 189 (221)
.++.++-..+.+.|..++.++..+-|.|. .=|-|+++..- ..++..|+.+++||.+.+.|
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 107 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNG 107 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcc
Confidence 46777777888877777764333322221 11334555431 12667888899999999999
Q ss_pred eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
.|...|.-|++++| -|+|.+++.|-+.+|
T Consensus 108 ~a~GgG~eLal~~D--~ria~~~a~f~~pe~ 136 (257)
T COG1024 108 YALGGGLELALACD--IRIAAEDAKFGLPEV 136 (257)
T ss_pred eEeechhhhhhcCC--eEEecCCcEecCccc
Confidence 99999999999999 799999999987765
No 108
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=95.25 E-value=0.21 Score=43.07 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecC-ceeEEe
Q 027632 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLA-WFLLVI 218 (221)
Q Consensus 170 laIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPn-S~~MIh 218 (221)
..++..|..+++||.+.+.|.|.+.|..|++++| .|++.++ +.|-+-
T Consensus 81 ~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D--~rva~~~~a~f~~p 128 (229)
T PRK06213 81 STLARRLLSHPKPVIVACTGHAIAKGAFLLLSAD--YRIGVHGPFKIGLN 128 (229)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCC--eeeEecCCcEEECc
Confidence 3456667788999999999999999999999999 7999998 776543
No 109
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.20 E-value=0.15 Score=48.32 Aligned_cols=46 Identities=11% Similarity=-0.112 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
.+++.|..++.||.+.+.|.|.+.|.-|+++|| -|++.+++.|-+-
T Consensus 115 ~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCD--lrIAse~A~Fg~P 160 (360)
T TIGR03200 115 DMVSAILGCDKPVICRVNGMRIGGGQEIGMAAD--FTIAQDLANFGQA 160 (360)
T ss_pred HHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCC--EEEEcCCCEEeCc
Confidence 456678888999999999999999999999999 7999999887653
No 110
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=95.11 E-value=0.15 Score=45.72 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=56.4
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEeCCCCC----------HHHHHHHHHHHHhc---CCCeEEEEcceechHHHH
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGS----------VTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAF 197 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGs----------V~aGlaIYDtmr~i---~~~V~Tv~~GlAASmAa~ 197 (221)
++-+-+.....-+...-..+...||...+++||-. ..++-.+.+.+... +.|+.+++.|-+.|.|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 55444444444444421123478999999999954 34444444555544 489999999999998887
Q ss_pred HHhcCCCCcEEeecCceeE
Q 027632 198 LLSAGTKGKYLCFLAWFLL 216 (221)
Q Consensus 198 IlaAGdkgkR~AlPnS~~M 216 (221)
-+.-+ ....+++|++.+-
T Consensus 125 amg~~-ad~v~Alp~A~i~ 142 (238)
T TIGR03134 125 AHGLQ-ADRIIALPGAMVH 142 (238)
T ss_pred HHccC-cCeEEEcCCcEEE
Confidence 77532 2479999999763
No 111
>PRK08788 enoyl-CoA hydratase; Validated
Probab=95.08 E-value=0.11 Score=47.19 Aligned_cols=38 Identities=8% Similarity=-0.206 Sum_probs=34.2
Q ss_pred hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 178 ~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.++.||.+.+.|.|.++|.-|++++| -|++.+++.|-+
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~ 156 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSHH--TIIAERGAKMGF 156 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEeeC
Confidence 46789999999999999999999998 799999987754
No 112
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=94.94 E-value=0.24 Score=43.48 Aligned_cols=85 Identities=20% Similarity=-0.007 Sum_probs=56.1
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHHH----------HHHHHH-HhcCCCeEEEEcceechHH
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM----------AIFDTI-RHIRPDVSTVCVGLAASMG 195 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aGl----------aIYDtm-r~i~~~V~Tv~~GlAASmA 195 (221)
++.++.+.+.+.|..++.++..+-|.|. .=|.|+++..-. .+...+ ..++.||.+.+.|.|.++|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG 106 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGG 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHH
Confidence 6777777787777777654333333221 113445543210 111111 3567899999999999999
Q ss_pred HHHHhcCCCCcEEeecCceeEE
Q 027632 196 AFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 196 a~IlaAGdkgkR~AlPnS~~MI 217 (221)
.-|++++| -|++.+++.|-+
T Consensus 107 ~~lalacD--~~ia~~~a~f~~ 126 (254)
T PRK08252 107 FELALACD--LIVAARDAKFGL 126 (254)
T ss_pred HHHHHhCC--EEEEeCCCEEeC
Confidence 99999998 799999988764
No 113
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=94.62 E-value=0.33 Score=42.77 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
++..|..++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+.++
T Consensus 90 ~~~~l~~~~~pvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~ 136 (260)
T PRK07659 90 IVVTLYTMPKLTISAIHGPAAGLGLSIALTAD--YVIADISAKLAMNFI 136 (260)
T ss_pred HHHHHHhCCCCEEEEecCceecHHHHHHHhCC--EEEEcCCCEEcCchh
Confidence 44556677899999999999999999999999 799999998866543
No 114
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=94.58 E-value=0.3 Score=43.04 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=37.5
Q ss_pred HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
++.++.||.+.+.|.|.+.|.-|++++| -|++.+++.|-+-++
T Consensus 96 ~~~~~kpvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~ 138 (263)
T PRK07799 96 GRRLTKPLIAAVEGPAIAGGTEILQGTD--IRVAGESAKFGISEA 138 (263)
T ss_pred HhcCCCCEEEEECCeEeccHHHHHHhCC--EEEecCCCEecCccc
Confidence 4567899999999999999999999998 799999998866543
No 115
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=94.52 E-value=0.33 Score=42.78 Aligned_cols=39 Identities=15% Similarity=-0.028 Sum_probs=34.9
Q ss_pred hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632 178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 178 ~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
.+++||.+.+.|.|.++|.-|++++| -|++.+++.|-+-
T Consensus 91 ~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~p 129 (254)
T PRK08259 91 RLSKPVIAAVSGYAVAGGLELALWCD--LRVAEEDAVFGVF 129 (254)
T ss_pred cCCCCEEEEECCEEEhHHHHHHHhCC--EEEecCCCEecCc
Confidence 56789999999999999999999999 8999999987553
No 116
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=94.33 E-value=0.32 Score=45.79 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=63.5
Q ss_pred EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEeC------CCCCHHHH----------H-------HHHHH
Q 027632 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS------PGGSVTAG----------M-------AIFDT 175 (221)
Q Consensus 124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyINS------PGGsV~aG----------l-------aIYDt 175 (221)
+|.|+.+ ++.++...+.+.|..++.++..+-|. |.+ -||++..- . .+...
T Consensus 23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvV--l~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (379)
T PLN02874 23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELII--IKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYH 100 (379)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEE--EECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 4666655 77888888888888777543223222 233 34554321 0 11234
Q ss_pred HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
|..+++||.+.+.|.|.++|.-|++++| -|++.+++.|-+=
T Consensus 101 i~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~p 141 (379)
T PLN02874 101 IHTYKKTQVALVHGLVMGGGAGLMVPMK--FRVVTEKTVFATP 141 (379)
T ss_pred HHhCCCCEEEEecCeEEecHHHHHHhCC--eEEEeCCeEEecc
Confidence 6677899999999999999999999998 7999999887653
No 117
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=94.21 E-value=0.32 Score=47.80 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=65.5
Q ss_pred cCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCC----------CHHHHHHHHHHHHhcCCCeEEEEcceechHHHH
Q 027632 128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG----------SVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 197 (221)
Q Consensus 128 ~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGG----------sV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~ 197 (221)
+|.++.+.++.+..-+...+. -.-||...+||||= -+..+..+++++.....|..+++.|-+++.|++
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 577888887777665554333 36899999999995 456777788888888899999999999998766
Q ss_pred HHhcC--CCCcEEeecCceeEE
Q 027632 198 LLSAG--TKGKYLCFLAWFLLV 217 (221)
Q Consensus 198 IlaAG--dkgkR~AlPnS~~MI 217 (221)
.+++. .....++.|++.+-+
T Consensus 406 am~~~~~~~d~~~a~p~a~~~v 427 (512)
T TIGR01117 406 AMCSKHLGADQVYAWPTAEIAV 427 (512)
T ss_pred HhccccCCCCEEEEcCCCeEee
Confidence 65531 123689999998754
No 118
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=94.10 E-value=0.35 Score=48.97 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=59.2
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe------CCCCCHHH----------------HHHHHHHHHhcCCCeEEEEc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCV 188 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN------SPGGsV~a----------------GlaIYDtmr~i~~~V~Tv~~ 188 (221)
++.++...+.+.|..++.++..+-|.| +. |-|+++.. ...++..|..++.||.+.+.
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl-~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVn 104 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVL-VSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIH 104 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 566777777777776665332222222 22 33444432 23466788889999999999
Q ss_pred ceechHHHHHHhcCCCCcEEeecC--ceeEEee
Q 027632 189 GLAASMGAFLLSAGTKGKYLCFLA--WFLLVIF 219 (221)
Q Consensus 189 GlAASmAa~IlaAGdkgkR~AlPn--S~~MIh~ 219 (221)
|.|.++|.-|++++| .|++.++ +.|-+-+
T Consensus 105 G~a~GgG~~LaLacD--~ria~~~~~a~fg~pe 135 (699)
T TIGR02440 105 GACLGGGLELALACH--SRVCSDDDKTVLGLPE 135 (699)
T ss_pred CEeecHHHHHHHhCC--EEEEcCCCCcEEechh
Confidence 999999999999998 7999876 5565544
No 119
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.07 E-value=0.37 Score=49.01 Aligned_cols=48 Identities=13% Similarity=-0.005 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 170 laIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
..+++.|..++.||.+.+.|.|.+.|.-|++++| .|++.+++.|-+=+
T Consensus 92 ~~~~~~i~~~pkPvIAai~G~alGGGleLalacD--~ria~~~a~fglPE 139 (714)
T TIGR02437 92 NSIFNKLEDLPVPTVAAINGIALGGGCECVLATD--FRIADDTAKIGLPE 139 (714)
T ss_pred HHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCC--EEEEeCCCEEecch
Confidence 3577888889999999999999999999999998 89999999886543
No 120
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=93.55 E-value=0.24 Score=48.17 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=64.4
Q ss_pred CccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHH
Q 027632 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL 198 (221)
Q Consensus 129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~I 198 (221)
|.|+.+.+.....-+...+.. +-||...+|.|| |-+..|-.+.+++...+.|+.||+.|-+.++|++.
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 678888777776655555543 469999999999 66788999999999999999999999999988877
Q ss_pred HhcCC--CCcEEeecCceeEE
Q 027632 199 LSAGT--KGKYLCFLAWFLLV 217 (221)
Q Consensus 199 laAGd--kgkR~AlPnS~~MI 217 (221)
+++.. ....+|.|++.+-+
T Consensus 386 m~~~~~~~~~~~Awp~a~~~v 406 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGV 406 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEES
T ss_pred hcccccchhhhhhhhcceeee
Confidence 77651 23579999987654
No 121
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.31 E-value=0.68 Score=46.93 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=57.9
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEE-EEeC-------CCCCHHH----------------HHHHHHHHHhcCCCeEEE
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIM-YLNS-------PGGSVTA----------------GMAIFDTIRHIRPDVSTV 186 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~L-yINS-------PGGsV~a----------------GlaIYDtmr~i~~~V~Tv 186 (221)
++.++...+.+.|..++.+ ++|.. .|-+ -|+++.. ...+++.|..++.||.+.
T Consensus 31 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 107 (708)
T PRK11154 31 LKAEFAEQVRAILKQLRED---KELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA 107 (708)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5666777777776666543 33332 2222 2344321 123677888899999999
Q ss_pred EcceechHHHHHHhcCCCCcEEeecCc--eeEEee
Q 027632 187 CVGLAASMGAFLLSAGTKGKYLCFLAW--FLLVIF 219 (221)
Q Consensus 187 ~~GlAASmAa~IlaAGdkgkR~AlPnS--~~MIh~ 219 (221)
+.|.|.+.|.-|++++| -|++.+++ .|-+.+
T Consensus 108 V~G~a~GgG~~LalacD--~ria~~~a~a~fg~pe 140 (708)
T PRK11154 108 IHGACLGGGLELALACH--YRVCTDDPKTVLGLPE 140 (708)
T ss_pred ECCeeechHHHHHHhCC--EEEEeCCCCceEeCcc
Confidence 99999999999999998 79999875 565544
No 122
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=93.10 E-value=0.48 Score=47.04 Aligned_cols=43 Identities=21% Similarity=0.040 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecC--ceeE
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLA--WFLL 216 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPn--S~~M 216 (221)
+.+.|+.+++||.+.+.|.|.++|..|++++| .|++.++ +.|-
T Consensus 115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD--~rIas~~~~a~fg 159 (550)
T PRK08184 115 IEDSSRHSGLKFIAAVNGTCAGGGYELALACD--EIVLVDDRSSAVS 159 (550)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEE
Confidence 45667788999999999999999999999999 7888876 5553
No 123
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.05 E-value=0.67 Score=47.12 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=59.1
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH------------------HHHHHHHHHhcCCCeEEEEc
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV 188 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a------------------GlaIYDtmr~i~~~V~Tv~~ 188 (221)
++.++.+.+.+.+..++.++..+-|.|.=+ |-|+++.. ...+++.|..+++||.+.+.
T Consensus 31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 110 (715)
T PRK11730 31 LDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAIN 110 (715)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 566777777777776665332222222111 23444422 12345667788999999999
Q ss_pred ceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
|.|.+.|.-|++++| -|++.+++.|-+=+
T Consensus 111 G~a~GgG~~LAlacD--~ria~~~a~f~~pe 139 (715)
T PRK11730 111 GYALGGGCECVLATD--YRVASPDARIGLPE 139 (715)
T ss_pred CEeehHHHHHHHhCC--EEEEcCCCEEeCch
Confidence 999999999999999 79999999886533
No 124
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=93.05 E-value=0.61 Score=46.36 Aligned_cols=44 Identities=20% Similarity=0.054 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecC--ceeEE
Q 027632 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLA--WFLLV 217 (221)
Q Consensus 172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPn--S~~MI 217 (221)
+++.|+.+++||.+.+.|.|.++|.-|.+++| -|++.++ +.|-+
T Consensus 111 i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD--~rvAs~~a~a~f~~ 156 (546)
T TIGR03222 111 IEDSSRHSGLKFLAAVNGTCAGGGYELALACD--EIMLVDDRSSSVSL 156 (546)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEEc
Confidence 55667788999999999999999999999998 7888875 45543
No 125
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=92.21 E-value=0.48 Score=43.91 Aligned_cols=87 Identities=10% Similarity=0.027 Sum_probs=67.4
Q ss_pred ccChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEcceec
Q 027632 130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAA 192 (221)
Q Consensus 130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------GlaIYDtmr~i~~~V~Tv~~GlAA 192 (221)
.++..++.++...+..++.++..+-|.||= =|-|.|+.+ -+..++.+.++++||.+.+.|.|-
T Consensus 60 al~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Al 139 (290)
T KOG1680|consen 60 ALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFAL 139 (290)
T ss_pred cccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceee
Confidence 367788999999999999877666555552 123333322 235677888899999999999999
Q ss_pred hHHHHHHhcCCCCcEEeecCceeEEe
Q 027632 193 SMGAFLLSAGTKGKYLCFLAWFLLVI 218 (221)
Q Consensus 193 SmAa~IlaAGdkgkR~AlPnS~~MIh 218 (221)
..|.-|.+.+| =|+|-++|+|++-
T Consensus 140 gGG~ELalmCD--irva~~~Akfg~~ 163 (290)
T KOG1680|consen 140 GGGLELALMCD--IRVAGEGAKFGFF 163 (290)
T ss_pred ccchhhhhhcc--eEeccCCCeeccc
Confidence 99999999999 6999999999863
No 126
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.59 E-value=0.93 Score=46.36 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCc--eeEEee
Q 027632 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAW--FLLVIF 219 (221)
Q Consensus 170 laIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS--~~MIh~ 219 (221)
..+++.|..++.||.+.+.|.|.++|.-|+++|| .|++.+++ .|-+.+
T Consensus 98 ~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD--~ria~~~a~a~fglpE 147 (737)
T TIGR02441 98 QEMFERIEKSQKPIVAAISGSCLGGGLELALACH--YRIATKDRKTLLGLPE 147 (737)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCC--EEEEcCCCCCeEecch
Confidence 3567788889999999999999999999999998 89999874 555544
No 127
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=91.58 E-value=1.6 Score=40.00 Aligned_cols=89 Identities=18% Similarity=0.102 Sum_probs=62.4
Q ss_pred EEcCccChhHHHHHHHHHhccccc----CCCCceEEEEeCCCCCHHHHH-------HHHHHHHhcC--CCeEEEEcce--
Q 027632 126 RCGGPVEDDMANIIVAQLLYLDAV----DPNKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL-- 190 (221)
Q Consensus 126 fL~G~Idd~~A~~IiaqLl~Lds~----d~~kdI~LyINSPGGsV~aGl-------aIYDtmr~i~--~~V~Tv~~Gl-- 190 (221)
|.+|-+.+.....+...+. +..+ ...-++.+.+.|.|+-+.+|. .++..+...+ .|+.+++.|-
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~g 148 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALR-LAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVG 148 (274)
T ss_pred ccCcCCCHHHHHHHHHHHH-HHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 5678888877777755444 3322 113489999999999887654 2333333333 6999999999
Q ss_pred echHHHHHHhcCCCCcEEeecCceeEE
Q 027632 191 AASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 191 AASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
|++.++++.+.+| ..++.|++.+.+
T Consensus 149 c~GG~a~~a~l~D--~vim~~~a~i~~ 173 (274)
T TIGR03133 149 CFGGMGIAAGLCS--YLIMTEEGRLGL 173 (274)
T ss_pred cchHHHHHHhcCC--EEEEeCCcEEec
Confidence 7888888888888 678888876543
No 128
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=90.20 E-value=1.9 Score=40.08 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=63.9
Q ss_pred EEcCccChhHHHHHHHHHhcccccCC----CCceEEEEeCCCCCHHHHH-------HHHHHHHhcC--CCeEEEEcce--
Q 027632 126 RCGGPVEDDMANIIVAQLLYLDAVDP----NKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL-- 190 (221)
Q Consensus 126 fL~G~Idd~~A~~IiaqLl~Lds~d~----~kdI~LyINSPGGsV~aGl-------aIYDtmr~i~--~~V~Tv~~Gl-- 190 (221)
|++|-+.+.....+...+. +..+.. -.++.+.+.|.|+-+.+|. .|+..+..++ .|+.+++.|-
T Consensus 79 f~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~g 157 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALE-LAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG 157 (301)
T ss_pred ccCcCcCHHHHHHHHHHHH-HHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 5688888887777765444 333332 2689999999998876543 3444444444 6999999998
Q ss_pred echHHHHHHhcCCCCcEEeecCceeEE
Q 027632 191 AASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 191 AASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
|++.++++.+.+| ..++.+++.+.+
T Consensus 158 c~GG~a~~a~l~D--~iIm~~~a~igl 182 (301)
T PRK07189 158 CFGGMGIAAALCS--YLIVSEEGRLGL 182 (301)
T ss_pred CcHHHHHHHhcCC--EEEEECCcEEec
Confidence 8888888888887 678888876543
No 129
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=90.09 E-value=2.7 Score=42.15 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=63.4
Q ss_pred CccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHH
Q 027632 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL 198 (221)
Q Consensus 129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~I 198 (221)
|.++.+.++....-+...+. -.=||...+|+|| |.+..+..+.+++.....|..|++.|-|++.|++.
T Consensus 380 g~l~~~~a~Kaarfi~lc~~--~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ--RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh--cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 55777766665444433333 2578999999999 44566677888888888999999999999998888
Q ss_pred HhcC--CCCcEEeecCceeE
Q 027632 199 LSAG--TKGKYLCFLAWFLL 216 (221)
Q Consensus 199 laAG--dkgkR~AlPnS~~M 216 (221)
+++. .....++.|++.+-
T Consensus 458 M~g~~~~~d~~~awp~A~i~ 477 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIG 477 (569)
T ss_pred hcCcCCCCCEEEECCCCeEE
Confidence 8743 23467888988763
No 130
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=87.95 E-value=4.2 Score=37.53 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=61.6
Q ss_pred EEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHH-------HHHH---HhcCCCeEEEEcceechHH
Q 027632 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI-------FDTI---RHIRPDVSTVCVGLAASMG 195 (221)
Q Consensus 126 fL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaI-------YDtm---r~i~~~V~Tv~~GlAASmA 195 (221)
|++|-++...++.+...+..-+.. .-|+..+..|+|....+|..- +..+ .....|..+++.|-+++.+
T Consensus 132 f~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~ 209 (292)
T PRK05654 132 FMGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 209 (292)
T ss_pred cccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence 447778888888886655543332 478999999999887776532 2232 2234788999999999987
Q ss_pred HHHHhc-CCCCcEEeecCceeEE
Q 027632 196 AFLLSA-GTKGKYLCFLAWFLLV 217 (221)
Q Consensus 196 a~IlaA-GdkgkR~AlPnS~~MI 217 (221)
+..++. || -.++-|++.+.+
T Consensus 210 aas~a~~~D--~iia~p~A~ig~ 230 (292)
T PRK05654 210 SASFAMLGD--IIIAEPKALIGF 230 (292)
T ss_pred HHHHHHcCC--EEEEecCcEEEe
Confidence 777655 66 578899886543
No 131
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=87.70 E-value=3.7 Score=37.76 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=61.7
Q ss_pred EEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHH-------H---HHhcCCCeEEEEcceechHH
Q 027632 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFD-------T---IRHIRPDVSTVCVGLAASMG 195 (221)
Q Consensus 126 fL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYD-------t---mr~i~~~V~Tv~~GlAASmA 195 (221)
|++|-++...++.+...+..-... .-|+....+|+|.-..+|..... . +.....|..+++.|-+++.+
T Consensus 131 f~gGSmg~~~geKi~r~~e~A~~~--~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~ 208 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKALED--NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGV 208 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence 346777777788776655543332 56899999999988777653322 2 22234789999999999988
Q ss_pred HHHHh-cCCCCcEEeecCceeEE
Q 027632 196 AFLLS-AGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 196 a~Ila-AGdkgkR~AlPnS~~MI 217 (221)
+..++ .|| -.++-|++.+.+
T Consensus 209 aas~a~~~D--~iia~p~A~ig~ 229 (285)
T TIGR00515 209 SASFAMLGD--LNIAEPKALIGF 229 (285)
T ss_pred HHHHHhCCC--EEEEECCeEEEc
Confidence 77775 676 579999986643
No 132
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=83.99 E-value=6.9 Score=39.08 Aligned_cols=85 Identities=11% Similarity=-0.046 Sum_probs=60.9
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEEeCCC--------CCHH-----------HH----HHHHHHHHhcCCCeEEEE
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG--------GSVT-----------AG----MAIFDTIRHIRPDVSTVC 187 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG--------GsV~-----------aG----laIYDtmr~i~~~V~Tv~ 187 (221)
++.++...+.+.+..++.+ +.+|.+.|=+-+ +++. .. ..+++.|+.++.||.+.+
T Consensus 295 l~~~~~~~L~~a~~~~~~~--d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTN--ELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CCHHHHHHHHHHHHHHhhC--CCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 6677888888888877643 245555543223 3331 10 125667888899999999
Q ss_pred -cceechHH-HHHHhcCCCCcEEe-------ecCceeEEee
Q 027632 188 -VGLAASMG-AFLLSAGTKGKYLC-------FLAWFLLVIF 219 (221)
Q Consensus 188 -~GlAASmA-a~IlaAGdkgkR~A-------lPnS~~MIh~ 219 (221)
.|.|...| .-|++++| -|++ .+++.|.+=+
T Consensus 373 ~~G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~~e 411 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAAD--RSYMLAFPDNNDPEPAITLSE 411 (546)
T ss_pred CCCeEeHHHHHHHHHhCc--eeeecCCCCCCCCCCEEeCCc
Confidence 79999999 99999998 7999 7898886544
No 133
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=83.67 E-value=4.1 Score=36.80 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=57.5
Q ss_pred cCccChh----HHHHHHHHHhcccccCCCCceEEEEeCCC---CCHHHHHHHHH----------HHHhcCCCeEEEEcce
Q 027632 128 GGPVEDD----MANIIVAQLLYLDAVDPNKDIIMYLNSPG---GSVTAGMAIFD----------TIRHIRPDVSTVCVGL 190 (221)
Q Consensus 128 ~G~Idd~----~A~~IiaqLl~Lds~d~~kdI~LyINSPG---GsV~aGlaIYD----------tmr~i~~~V~Tv~~Gl 190 (221)
.++|.=+ .|..+.+.+ ...+..+|.+.|.+|| |--.+-+.|+. .-|....||.+++.|-
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i----~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~ 115 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTI----RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGK 115 (234)
T ss_pred CCcccHHHHHHHHHHHHHHH----hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 4555543 344444444 3466899999999999 44455555544 4455557999999999
Q ss_pred echHHHHHHhcCCCCcEEeecCceeEEee
Q 027632 191 AASMGAFLLSAGTKGKYLCFLAWFLLVIF 219 (221)
Q Consensus 191 AASmAa~IlaAGdkgkR~AlPnS~~MIh~ 219 (221)
|.|.| ||..+-..++-+|+| -.|||-
T Consensus 116 A~SGa-FLA~GlqA~rl~AL~--ga~i~v 141 (234)
T PF06833_consen 116 AMSGA-FLAHGLQANRLIALP--GAMIHV 141 (234)
T ss_pred cccHH-HHHHHHHhcchhcCC--CCeeec
Confidence 99966 566554445789999 566664
No 134
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=81.97 E-value=1.5 Score=41.14 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=50.5
Q ss_pred CCceEEEEeCCCCCH-------HHHHHHHHHHH---hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 152 NKDIIMYLNSPGGSV-------TAGMAIFDTIR---HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 152 ~kdI~LyINSPGGsV-------~aGlaIYDtmr---~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
.-||..+|++||-.. ..+.+|-..|. .++.||.++++|--.|.|++-+.-|| +-+++.||++=+
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ySV 223 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSV 223 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhceeee
Confidence 579999999999543 33455654444 45689999999999999999999998 568888988744
No 135
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=79.66 E-value=14 Score=37.27 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=58.6
Q ss_pred EEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHH---H------HH-HHHHH-HHhc--CCCeEEEEcceec
Q 027632 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT---A------GM-AIFDT-IRHI--RPDVSTVCVGLAA 192 (221)
Q Consensus 126 fL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~---a------Gl-aIYDt-mr~i--~~~V~Tv~~GlAA 192 (221)
+++|-++...++.+...+. +..+. .-||...++|+|+.+. . ++ .|+.. .+.. ..|..+++.|-|+
T Consensus 140 v~GGs~g~~~~~Ki~r~~e-lA~~~-~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~ 217 (569)
T PLN02820 140 VKGGTYYPITVKKHLRAQE-IAAQC-RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCT 217 (569)
T ss_pred ccCCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 4578888888887765444 33322 5789999999998762 1 11 24444 3323 3699999999999
Q ss_pred hHHHHHHhcCCCCcEEee-cCceeE
Q 027632 193 SMGAFLLSAGTKGKYLCF-LAWFLL 216 (221)
Q Consensus 193 SmAa~IlaAGdkgkR~Al-PnS~~M 216 (221)
+.++++.+.++. .++. +++.+.
T Consensus 218 gGgAy~~a~~D~--vim~~~~a~i~ 240 (569)
T PLN02820 218 AGGAYVPAMADE--SVIVKGNGTIF 240 (569)
T ss_pred hHHHHHHHhCCc--eEEecCCcEEE
Confidence 999999887773 3444 456443
No 136
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=79.15 E-value=11 Score=37.77 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=58.1
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE-eCC-------CCCHH-----------HH----HHHHHHHHhcCCCeEEEE
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSP-------GGSVT-----------AG----MAIFDTIRHIRPDVSTVC 187 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-NSP-------GGsV~-----------aG----laIYDtmr~i~~~V~Tv~ 187 (221)
++.++...+.+.+..++.++ .+|...| -+- |+++. .. ..++..|+.++.||.+.+
T Consensus 299 l~~~~~~eL~~al~~~~~~d--~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNE--LDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56777788888777766422 3444333 232 34421 10 124556777789999999
Q ss_pred c-ceechHH-HHHHhcCCCCcEEee-------cCceeEEeec
Q 027632 188 V-GLAASMG-AFLLSAGTKGKYLCF-------LAWFLLVIFV 220 (221)
Q Consensus 188 ~-GlAASmA-a~IlaAGdkgkR~Al-------PnS~~MIh~~ 220 (221)
. |.|..+| .-|++++| .|++. +++.|-+=++
T Consensus 377 ~~G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~pe~ 416 (550)
T PRK08184 377 EPGSCFAGTLAELALAAD--RSYMLALPDDNDPAPAITLSAL 416 (550)
T ss_pred CCCceehhHHHHHHHHCC--hhhhcCCCCCCCCCCEEECccc
Confidence 6 9999999 99999998 78999 9988876443
No 137
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=77.71 E-value=3.5 Score=34.82 Aligned_cols=44 Identities=20% Similarity=0.486 Sum_probs=32.4
Q ss_pred EEEEcCccChhHHHHHHHHHhc-ccccCCCCceEEEEeCCCCCHH
Q 027632 124 IIRCGGPVEDDMANIIVAQLLY-LDAVDPNKDIIMYLNSPGGSVT 167 (221)
Q Consensus 124 IIfL~G~Idd~~A~~IiaqLl~-Lds~d~~kdI~LyINSPGGsV~ 167 (221)
++-+.|.|+..-++.+.+++-. |....+.+.+.|.+-||||-|.
T Consensus 102 VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 102 VLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMVH 146 (155)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceee
Confidence 4677999998766666555443 3444567899999999999874
No 138
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=72.12 E-value=20 Score=35.52 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=60.3
Q ss_pred EEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHH-------HHH-HHHHh-cCCCeEEEEcceechHHH
Q 027632 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM-------AIF-DTIRH-IRPDVSTVCVGLAASMGA 196 (221)
Q Consensus 126 fL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGl-------aIY-Dtmr~-i~~~V~Tv~~GlAASmAa 196 (221)
|++|-+.....+.++..+. +..+. .-|+..++.|.|+-+..|. .++ ...+. -..|+.+++.|-|+..++
T Consensus 93 ~~gGS~g~~~~~K~~r~~e-~A~~~-~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a 170 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMD-LAMKM-GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV 170 (512)
T ss_pred ccccCCCHHHHHHHHHHHH-HHHHc-CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence 5678888887777765443 33333 4789999999998865543 222 22222 236899999999999999
Q ss_pred HHHhcCCCCcEEeecCce
Q 027632 197 FLLSAGTKGKYLCFLAWF 214 (221)
Q Consensus 197 ~IlaAGdkgkR~AlPnS~ 214 (221)
+.++.+| ...+.|++.
T Consensus 171 ~~~al~D--~vim~~~~a 186 (512)
T TIGR01117 171 YSPALTD--FIYMVDNTS 186 (512)
T ss_pred HHHHhcC--ceEEeccce
Confidence 9999998 678888753
No 139
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=64.58 E-value=43 Score=31.29 Aligned_cols=87 Identities=10% Similarity=0.107 Sum_probs=57.1
Q ss_pred EEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHH-----------HHHHHHhcCCCeEEEEcceechH
Q 027632 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-----------IFDTIRHIRPDVSTVCVGLAASM 194 (221)
Q Consensus 126 fL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGla-----------IYDtmr~i~~~V~Tv~~GlAASm 194 (221)
|++|-+.....+.+...+. +..+. .-|+.+...|.|+-+.+|.. ++...+.-..|+.++..|=+++.
T Consensus 144 f~gGSmG~v~geKi~ra~e-~A~~~-rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG 221 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIE-YATNE-SLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGG 221 (296)
T ss_pred ccccCcCHHHHHHHHHHHH-HHHHc-CCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchH
Confidence 3456666666666655443 33222 46899999999988766551 12112133468899999999888
Q ss_pred HHHHHhc-CCCCcEEeecCceeE
Q 027632 195 GAFLLSA-GTKGKYLCFLAWFLL 216 (221)
Q Consensus 195 Aa~IlaA-GdkgkR~AlPnS~~M 216 (221)
++..++. || -..+-|++.+-
T Consensus 222 ~aas~a~l~D--iiiae~~A~Ig 242 (296)
T CHL00174 222 VTASFGMLGD--IIIAEPNAYIA 242 (296)
T ss_pred HHHHHHHccc--EEEEeCCeEEE
Confidence 8888775 87 46777888654
No 140
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=64.34 E-value=46 Score=28.09 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhcccccCCCCceEEEE-eCCCCCHHHHHHHHHHHHh--------------------------cCCCeEE
Q 027632 133 DDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH--------------------------IRPDVST 185 (221)
Q Consensus 133 d~~A~~IiaqLl~Lds~d~~kdI~LyI-NSPGGsV~aGlaIYDtmr~--------------------------i~~~V~T 185 (221)
+...+.+.+.+..++. ..+.+.|=+ +-+||++..+..|.+.+-. ...||+.
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~v 149 (224)
T cd06567 72 ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLVV 149 (224)
T ss_pred cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEEE
Confidence 4555666666666654 356666666 6688998888888777653 2358889
Q ss_pred EEcceechHHHHHHhcC
Q 027632 186 VCVGLAASMGAFLLSAG 202 (221)
Q Consensus 186 v~~GlAASmAa~IlaAG 202 (221)
++.+..+|+|-+++.+=
T Consensus 150 L~~~~taSaaE~~a~~l 166 (224)
T cd06567 150 LVNEGSASASEIFAGAL 166 (224)
T ss_pred EECCCCccHHHHHHHHH
Confidence 99999999998877654
No 141
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=54.84 E-value=48 Score=30.31 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=53.2
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE-eCCCCCHHHHHHHHHHHH------------------------hcCCCeEE
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIR------------------------HIRPDVST 185 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-NSPGGsV~aGlaIYDtmr------------------------~i~~~V~T 185 (221)
.+....+.+.+.|..|+..+ .+.+.|=+ +-+||++..+..|.+.+- ....||..
T Consensus 161 f~~~~~~~~~~~l~~l~~~~-~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~v 239 (334)
T TIGR00225 161 FSEHTTEDVKKALDKLEKKN-AKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVV 239 (334)
T ss_pred cccchHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEE
Confidence 35556777878777776543 56677766 779999999888887651 12358999
Q ss_pred EEcceechHHHHHHhcCC
Q 027632 186 VCVGLAASMGAFLLSAGT 203 (221)
Q Consensus 186 v~~GlAASmAa~IlaAGd 203 (221)
++.+..||+|-+++.+=.
T Consensus 240 Lvn~~TaSaaE~~a~~l~ 257 (334)
T TIGR00225 240 LVNRGSASASEIFAGALQ 257 (334)
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 999999999998886643
No 142
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=50.17 E-value=84 Score=27.49 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=48.9
Q ss_pred CCCCccccchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhccc-ccCCCCceEEEE---eCCCCCHHHHHHHHHHHHh
Q 027632 103 GPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLD-AVDPNKDIIMYL---NSPGGSVTAGMAIFDTIRH 178 (221)
Q Consensus 103 ~~~p~~~e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Ld-s~d~~kdI~LyI---NSPGGsV~aGlaIYDtmr~ 178 (221)
+.||...-+..++..+++.+--+-+ ..+.+|+.|--.+..|. ..+....+.|.+ |...|.+..-.+--..-+.
T Consensus 64 d~p~t~d~~~~~~l~~~l~~~q~g~---ag~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~ 140 (191)
T cd01455 64 NHPPKNNKERLETLKMMHAHSQFCW---SGDHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALARE 140 (191)
T ss_pred ccCcccchhHHHHHHHHHHhcccCc---cCccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHh
Confidence 3445443333456777776654433 44677777777777775 433334455555 3334445544433344556
Q ss_pred cCCCeEEEEcce
Q 027632 179 IRPDVSTVCVGL 190 (221)
Q Consensus 179 i~~~V~Tv~~Gl 190 (221)
...+||||.+|-
T Consensus 141 ~gV~iytIgiG~ 152 (191)
T cd01455 141 PNVNAFVIFIGS 152 (191)
T ss_pred CCCEEEEEEecC
Confidence 678999999986
No 143
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=47.59 E-value=33 Score=33.50 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=56.9
Q ss_pred EEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCC--CHHHHH-------HHHHHHHhc--CCCeEEEEcceechH
Q 027632 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG--SVTAGM-------AIFDTIRHI--RPDVSTVCVGLAASM 194 (221)
Q Consensus 126 fL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGG--sV~aGl-------aIYDtmr~i--~~~V~Tv~~GlAASm 194 (221)
+++|-+.+.....+...+. +..+. .-|+..+++|.|+ ....|+ .++..+... ..|+.+++.|-|...
T Consensus 68 ~~gGs~g~~~~~Ki~ra~~-~A~~~-~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg 145 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAIE-LALEN-GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGG 145 (493)
T ss_dssp SGGGTBSHHHHHHHHHHHH-HHHHH-TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGG
T ss_pred eecCCCCcccceeeehHHH-HHHHc-CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccc
Confidence 3466677777777655444 33322 5678888999999 443333 233323222 368999999999999
Q ss_pred HHHHHhcCCCCcEEeecC-ceeE
Q 027632 195 GAFLLSAGTKGKYLCFLA-WFLL 216 (221)
Q Consensus 195 Aa~IlaAGdkgkR~AlPn-S~~M 216 (221)
++++.+.++ ..++.+. +.+.
T Consensus 146 ~A~~~~~~d--~~i~~~~~a~i~ 166 (493)
T PF01039_consen 146 GAYLAALSD--FVIMVKGTARIF 166 (493)
T ss_dssp GGHHHHHSS--EEEEETTTCEEE
T ss_pred hhhcccccC--ccccCccceEEE
Confidence 999999887 5577775 6554
No 144
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=47.53 E-value=55 Score=26.74 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHhcccccCCCCceEEEEeCCCCC--HHHHHHHHHHHH
Q 027632 132 EDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGS--VTAGMAIFDTIR 177 (221)
Q Consensus 132 dd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGs--V~aGlaIYDtmr 177 (221)
+++..+.|++-+..+ .++-.|.+||-.|. .+.+|.|||.|+
T Consensus 107 ~~~~iD~fi~~v~~~-----p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 107 DPEDIDAFINFVKSL-----PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp -HHHHHHHHHHHHTS------TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 344566666666655 24688889999877 799999999986
No 145
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=46.95 E-value=1.5e+02 Score=25.59 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=17.5
Q ss_pred CCCeEEEEcceechHHHHHHhcC
Q 027632 180 RPDVSTVCVGLAASMGAFLLSAG 202 (221)
Q Consensus 180 ~~~V~Tv~~GlAASmAa~IlaAG 202 (221)
..||..++.+..+|+|-+++.+=
T Consensus 131 ~~pvvVLvn~~TaSaaE~~a~~l 153 (211)
T cd07560 131 DGPLVVLVNGGSASASEIVAGAL 153 (211)
T ss_pred CCCEEEEeCCCcccHHHHHHHHH
Confidence 45788888888888888777543
No 146
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=44.54 E-value=49 Score=33.29 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=64.7
Q ss_pred EcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHH
Q 027632 127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGA 196 (221)
Q Consensus 127 L~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa 196 (221)
++|.|+.+.+..-..-+.+-+.. +=||....|.|| |-+.-|--|.+++-..+.|..|++.+-+..+|.
T Consensus 336 ~~G~l~~~sa~KaArFI~~cd~~--~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~ 413 (526)
T COG4799 336 LGGVLDIDSADKAARFIRLCDAF--NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAY 413 (526)
T ss_pred cccccchHHHHHHHHHHHhhhcc--CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccccccee
Confidence 37788887666543333223332 568999999999 667888899999999999999999999999988
Q ss_pred HHHhcCCCC--cEEeecCceeE
Q 027632 197 FLLSAGTKG--KYLCFLAWFLL 216 (221)
Q Consensus 197 ~IlaAGdkg--kR~AlPnS~~M 216 (221)
+..++..-+ --+|-|++.+-
T Consensus 414 ~~M~~~~~~~~~~~AwP~a~ia 435 (526)
T COG4799 414 YVMGGKALGPDFNYAWPTAEIA 435 (526)
T ss_pred eeecCccCCCceeEecCcceee
Confidence 877765433 33666777653
No 147
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=44.38 E-value=82 Score=29.23 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=52.2
Q ss_pred cEEEEcCc--cChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceec
Q 027632 123 RIIRCGGP--VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 192 (221)
Q Consensus 123 RIIfL~G~--Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAA 192 (221)
.+|-++.+ .|-+ +.+-|.||..++..+-|.||+-+-|-.+.++..+.++.+. ++||..+..|-.+
T Consensus 179 ~~VS~Gn~~~adv~----~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 179 TCVGIGGDPFNGTN----FVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEEeCCCCCCCCC----HHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 46888888 6544 4456667877788999999999988888899988888765 7899999888775
No 148
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=40.55 E-value=1.1e+02 Score=28.96 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=51.7
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE-eCCCCCHHHHHHHHHHHHh--------------------------cCCCe
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH--------------------------IRPDV 183 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-NSPGGsV~aGlaIYDtmr~--------------------------i~~~V 183 (221)
.+...++.+.+.|..|...+ .+.+.|=+ |-|||.+.++..|.+.+-. ...||
T Consensus 204 F~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv 282 (389)
T PLN00049 204 FNQNASSAVKEAIETLRANG-VDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADGSSAIATSEPL 282 (389)
T ss_pred ccchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCCCccccCCCCE
Confidence 45556777888887776544 56677666 7789999999888887721 12478
Q ss_pred EEEEcceechHHHHHHhcC
Q 027632 184 STVCVGLAASMGAFLLSAG 202 (221)
Q Consensus 184 ~Tv~~GlAASmAa~IlaAG 202 (221)
..++.+..||+|-++..+=
T Consensus 283 vVLvn~~TaSasEi~a~al 301 (389)
T PLN00049 283 AVLVNKGTASASEILAGAL 301 (389)
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 8888899999888877553
No 149
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=40.25 E-value=6.7 Score=36.14 Aligned_cols=50 Identities=22% Similarity=0.178 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632 169 GMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV 220 (221)
Q Consensus 169 GlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~ 220 (221)
-..-|..|.++++||.+-+-|-|.++|.=|..|+| -||+...+.|=|-+|
T Consensus 115 ~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcD--IRycsqDAffsvkEV 164 (292)
T KOG1681|consen 115 YQDTFTAIERCPKPVIAAVHGACIGAGVDLITACD--IRYCSQDAFFSVKEV 164 (292)
T ss_pred HHHHHHHHHhCChhHHHHHHhhhccccccceeecc--eeeecccceeeeeee
Confidence 34557788888999999999999999999999998 699999999988876
No 150
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=39.31 E-value=17 Score=33.14 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeE
Q 027632 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLL 216 (221)
Q Consensus 171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~M 216 (221)
-+.+.||.++.||.+.+.|.|+-+|.-|.+.+| --.+..++.|.
T Consensus 116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD--~vVa~k~SkF~ 159 (287)
T KOG1682|consen 116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCD--MVVATKNSKFS 159 (287)
T ss_pred HHHHHHhcCCCceEEEecchhhhccceEEEeee--EEEEecCcccc
Confidence 456677888899999999999999999998887 34666666654
No 151
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.55 E-value=88 Score=25.15 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=10.9
Q ss_pred cchhHHHHhhcCCcEEEE
Q 027632 110 GRFQNVLSQLFQHRIIRC 127 (221)
Q Consensus 110 e~~~di~s~L~~~RIIfL 127 (221)
..|.....+.++-.++-+
T Consensus 20 ~~~~~~~~~~~~~~v~N~ 37 (177)
T cd01844 20 MAWTAILARRLGLEVINL 37 (177)
T ss_pred CcHHHHHHHHhCCCeEEe
Confidence 357777777666555443
No 152
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=38.43 E-value=52 Score=29.34 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=31.4
Q ss_pred eEEEEeCCC-CCHHHHHHHHHHHHhcCCCeEEEEcce
Q 027632 155 IIMYLNSPG-GSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (221)
Q Consensus 155 I~LyINSPG-GsV~aGlaIYDtmr~i~~~V~Tv~~Gl 190 (221)
|.+.+..+| |.++-+++|.+.|+. ..+|.-++.|.
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 778899999 999999999999998 88888777666
No 153
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=37.86 E-value=1.2e+02 Score=24.82 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=35.8
Q ss_pred CcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEcce
Q 027632 122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGL 190 (221)
Q Consensus 122 ~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~--~~V~Tv~~Gl 190 (221)
..+|-+|.+.|=. +.+-|.||..++..+-|.+||.+-+ .+....++++... +||..+-.|-
T Consensus 29 s~~vs~Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~----d~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 29 SYVVSVGNEADVD----FADLLEYLAEDPDTRVIVLYLEGIG----DGRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp SEEEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred eEEEEeCccccCC----HHHHHHHHhcCCCCCEEEEEccCCC----CHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3468888887554 3334556666777999999999644 3788888888876 8999998886
No 154
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=37.81 E-value=49 Score=24.46 Aligned_cols=77 Identities=14% Similarity=0.299 Sum_probs=44.5
Q ss_pred cEEEEcCccChhHHHHHHHHHhcccccCCCCceEE------EEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHH
Q 027632 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIM------YLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGA 196 (221)
Q Consensus 123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~L------yINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa 196 (221)
-++.+.|+++-..++.+.+++..+-...+.+.+.| ||+|.| +..=..++..++. ..+..+..|.-....-
T Consensus 10 ~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssg--i~~L~~~~~~~~~--~g~~l~l~~~~~~v~~ 85 (106)
T TIGR02886 10 LIVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSG--LGVILGRYKKIKN--EGGEVIVCNVSPAVKR 85 (106)
T ss_pred EEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchH--HHHHHHHHHHHHH--cCCEEEEEeCCHHHHH
Confidence 46889999999999999888875432223455555 344433 1111223333443 3455556666666666
Q ss_pred HHHhcCC
Q 027632 197 FLLSAGT 203 (221)
Q Consensus 197 ~IlaAGd 203 (221)
++-.+|-
T Consensus 86 ~l~~~gl 92 (106)
T TIGR02886 86 LFELSGL 92 (106)
T ss_pred HHHHhCC
Confidence 6655553
No 155
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=37.53 E-value=81 Score=29.08 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632 167 TAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV 217 (221)
Q Consensus 167 ~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI 217 (221)
..--.+++.|..++.||.+-++|.|.+.|-=++.|+| -|.+..++.|-+
T Consensus 111 ~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACD--iRva~s~akmGL 159 (291)
T KOG1679|consen 111 NGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACD--IRVAASSAKMGL 159 (291)
T ss_pred HHHHHHHHHHHhCCccceehhcchhcccchhhhhhcc--ceehhhhccccc
Confidence 3445788999999999999999999999999999998 688888877654
No 156
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=37.13 E-value=96 Score=30.27 Aligned_cols=90 Identities=16% Similarity=0.117 Sum_probs=61.4
Q ss_pred cEEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHH-------------------HHHHHH
Q 027632 123 RIIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVT-------------------AGMAIF 173 (221)
Q Consensus 123 RIIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~-------------------aGlaIY 173 (221)
|+|-|+- .|+-++...+..+|..++..+..+-|.|-=+ |-||+|- +=..+.
T Consensus 49 r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~ 128 (401)
T KOG1684|consen 49 RVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLN 128 (401)
T ss_pred eEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 5555544 3677888888888888887654453333333 4578853 223455
Q ss_pred HHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCce
Q 027632 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWF 214 (221)
Q Consensus 174 Dtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~ 214 (221)
..|-.+.+|+.++..|+-++.|.=|..-|. -|.|...++
T Consensus 129 ~~igtY~KP~ValmdGITMGgG~GLS~hg~--fRVATerT~ 167 (401)
T KOG1684|consen 129 HLIGTYLKPYVALMDGITMGGGVGLSVHGR--FRVATERTV 167 (401)
T ss_pred HHHHHhcCceEEEeeceeecCCcceeecce--eEEeeccce
Confidence 566677789999999999999988888775 566655543
No 157
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=35.83 E-value=1.7e+02 Score=21.30 Aligned_cols=76 Identities=16% Similarity=0.312 Sum_probs=44.1
Q ss_pred cEEEEcCccChhHHHHHHHHHhcccccCCCCceEE------EEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHH
Q 027632 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIM------YLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGA 196 (221)
Q Consensus 123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~L------yINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa 196 (221)
-+|.+.|.++-+.+..+.+.+..+......+.+.+ +|+|-| ...=..++..++. ..+..+..|+-....-
T Consensus 14 ~vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssg--l~~L~~~~~~~~~--~~~~~~l~~~~~~~~~ 89 (108)
T TIGR00377 14 VIVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSG--LGVLLGRYKQVRR--VGGQLVLVSVSPRVAR 89 (108)
T ss_pred EEEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEcccc--HHHHHHHHHHHHh--cCCEEEEEeCCHHHHH
Confidence 36788999999988888888876554333445555 444443 1122223334443 3456666666666655
Q ss_pred HHHhcC
Q 027632 197 FLLSAG 202 (221)
Q Consensus 197 ~IlaAG 202 (221)
++-..|
T Consensus 90 ~l~~~~ 95 (108)
T TIGR00377 90 LLDITG 95 (108)
T ss_pred HHHHhC
Confidence 555444
No 158
>PRK11186 carboxy-terminal protease; Provisional
Probab=35.43 E-value=1.2e+02 Score=31.38 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=53.7
Q ss_pred ChhHHHHHHHHHhcccccCCCCceEEEE-eCCCCCHHHHHHHHHHHH-------------------------hcCCCeEE
Q 027632 132 EDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIR-------------------------HIRPDVST 185 (221)
Q Consensus 132 dd~~A~~IiaqLl~Lds~d~~kdI~LyI-NSPGGsV~aGlaIYDtmr-------------------------~i~~~V~T 185 (221)
....++.+..+|..|..++ .+.+.|=+ |-|||.+.++..|.+.+- ....|+..
T Consensus 364 ~~~~~~d~~~~l~~l~~~~-v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvV 442 (667)
T PRK11186 364 YVGLTDDVKKQLQKLEKQN-VSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVV 442 (667)
T ss_pred ccchHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEE
Confidence 3345677777777776544 67777777 889999999998887641 11248888
Q ss_pred EEcceechHHHHHHhcCCCCcE
Q 027632 186 VCVGLAASMGAFLLSAGTKGKY 207 (221)
Q Consensus 186 v~~GlAASmAa~IlaAGdkgkR 207 (221)
++.+..||++-+++.|=...+|
T Consensus 443 LVN~~SASASEIfA~alqd~~r 464 (667)
T PRK11186 443 LVDRYSASASEIFAAAMQDYGR 464 (667)
T ss_pred EeCCCCccHHHHHHHHHHhcCC
Confidence 9999999999888766433333
No 159
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.17 E-value=1.2e+02 Score=23.74 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=40.7
Q ss_pred CcEEEEcCccChhH--HHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHH--HHHHHHhcCCCeEEEEcceec
Q 027632 122 HRIIRCGGPVEDDM--ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA--IFDTIRHIRPDVSTVCVGLAA 192 (221)
Q Consensus 122 ~RIIfL~G~Idd~~--A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGla--IYDtmr~i~~~V~Tv~~GlAA 192 (221)
+|++++|.-|.+.. ...+...|. ...+..++.+.=-+-+|.....+. +...+...++++.++..|.--
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~l~---~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~ND 73 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETYLA---ARYPELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGIND 73 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHHHH---HhCCCCCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEeecch
Confidence 58889988888754 333333333 222335677766677777766653 333344455788888776543
No 160
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=33.96 E-value=2.1e+02 Score=25.55 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=15.6
Q ss_pred CeEEEEcceechHHHHHHhcC
Q 027632 182 DVSTVCVGLAASMGAFLLSAG 202 (221)
Q Consensus 182 ~V~Tv~~GlAASmAa~IlaAG 202 (221)
||+.++.+..||+|=+++.+=
T Consensus 162 pv~VL~~~~TASAaE~~a~~L 182 (256)
T cd07561 162 KVYVLTSGSTASASELVINSL 182 (256)
T ss_pred cEEEEECCCcccHHHHHHHHh
Confidence 677888888888887776543
No 161
>smart00245 TSPc tail specific protease. tail specific protease
Probab=33.45 E-value=2.2e+02 Score=23.79 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=17.7
Q ss_pred CCCeEEEEcceechHHHHHHhcC
Q 027632 180 RPDVSTVCVGLAASMGAFLLSAG 202 (221)
Q Consensus 180 ~~~V~Tv~~GlAASmAa~IlaAG 202 (221)
..||..++.+..||+|-+++.+=
T Consensus 112 ~~pv~vL~~~~TaSaaE~~a~~l 134 (192)
T smart00245 112 SKPLVVLVNEGTASASEIFAGAL 134 (192)
T ss_pred CCCEEEEECCCCeeHHHHHHHHH
Confidence 35788888888888888777554
No 162
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=33.42 E-value=2.4e+02 Score=24.79 Aligned_cols=81 Identities=22% Similarity=0.186 Sum_probs=47.9
Q ss_pred HhhcCCcEEEEcCc-cChhHHHHHHHHHhcccccCCCCceEEEE-eCCCCCHHHHHHHHHHHHh----------------
Q 027632 117 SQLFQHRIIRCGGP-VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH---------------- 178 (221)
Q Consensus 117 s~L~~~RIIfL~G~-Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-NSPGGsV~aGlaIYDtmr~---------------- 178 (221)
.++..++|-+|.-. ++++....+..+++... + .+.+.|=+ +-+||++.. .|.+.+..
T Consensus 82 ~~~~~~~igYi~i~~~~~~~~~~~~~~~~~~~--~-~~glIiDlR~N~GG~~~~--~l~~~~~~~~~~~~~~r~~~~~~~ 156 (266)
T cd07562 82 EELSDGRIGYVHIPDMGDDGFAEFLRDLLAEV--D-KDGLIIDVRFNGGGNVAD--LLLDFLSRRRYGYDIPRGGGKPVT 156 (266)
T ss_pred HHhcCCcEEEEEeCCCChHHHHHHHHHHHhcC--C-CceEEEEecCCCCCcHHH--HHHHHhCCCceEEEccCCCCCCCC
Confidence 45555676554211 24444555555554322 2 56677666 567787433 33444321
Q ss_pred -----cCCCeEEEEcceechHHHHHHhcC
Q 027632 179 -----IRPDVSTVCVGLAASMGAFLLSAG 202 (221)
Q Consensus 179 -----i~~~V~Tv~~GlAASmAa~IlaAG 202 (221)
.+.||..++.+.++|+|-+++.+-
T Consensus 157 ~p~~~~~~pv~vL~~~~t~SaaE~~a~~l 185 (266)
T cd07562 157 YPSGRWRGPVVVLVNEGSASDAEIFAYGF 185 (266)
T ss_pred CcccccCCCEEEEECCCCCchHHHHHHHH
Confidence 346899999999999998887654
No 163
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.31 E-value=2.8e+02 Score=22.96 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=40.4
Q ss_pred cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEE-eCCCCCHHHHHHHHHHHHhcCCCeEEEEcce
Q 027632 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (221)
Q Consensus 123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-NSPGGsV~aGlaIYDtmr~i~~~V~Tv~~Gl 190 (221)
+|-++|+. +++++.+.+.|.. ..| .+.+.- ..|--+-.+-..|.+.|+..++++.-++.|.
T Consensus 50 ~ifllG~~--~~~~~~~~~~l~~---~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 50 RIFLLGGS--EEVLEKAAANLRR---RYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred eEEEEeCC--HHHHHHHHHHHHH---HCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 56566653 5666666666553 233 344443 2222377788899999999999999888874
No 164
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=31.97 E-value=2e+02 Score=22.55 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=31.4
Q ss_pred CCceEEEE-eCCCCCHHHHHHHHHHHH-----------------------------hcCCCeEEEEcceechHHHHHHhc
Q 027632 152 NKDIIMYL-NSPGGSVTAGMAIFDTIR-----------------------------HIRPDVSTVCVGLAASMGAFLLSA 201 (221)
Q Consensus 152 ~kdI~LyI-NSPGGsV~aGlaIYDtmr-----------------------------~i~~~V~Tv~~GlAASmAa~IlaA 201 (221)
.+.+.|=+ +.+||+...+..+...+. ....+|+.++.+.++|+|-.++.+
T Consensus 32 ~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vL~~~~t~Saae~fa~~ 111 (169)
T PF03572_consen 32 TDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPVYVLTDENTASAAEIFASA 111 (169)
T ss_dssp SSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEEEEEE-TTBBTHHHHHHHH
T ss_pred CCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCEEEEeCCCCCChhHHHHHH
Confidence 45555555 556666666665555443 134578999999999999888865
Q ss_pred C
Q 027632 202 G 202 (221)
Q Consensus 202 G 202 (221)
-
T Consensus 112 l 112 (169)
T PF03572_consen 112 L 112 (169)
T ss_dssp H
T ss_pred H
Confidence 4
No 165
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.75 E-value=1.3e+02 Score=23.85 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=30.9
Q ss_pred cEEEEcCccChh--HHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHH------HHHhcCCCeEEEEccee
Q 027632 123 RIIRCGGPVEDD--MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFD------TIRHIRPDVSTVCVGLA 191 (221)
Q Consensus 123 RIIfL~G~Idd~--~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYD------tmr~i~~~V~Tv~~GlA 191 (221)
||+++|.-|.+. ....+.+.| .+.++=-+-+|..+..+.-++ .+...++++..++.|.-
T Consensus 1 ~iv~~GDS~t~g~~~~~~l~~~l----------~~~v~N~g~~G~t~~~~~~~~~~~~~~~l~~~~pd~Vii~~G~N 67 (189)
T cd01825 1 RIAQLGDSHIAGDFFTDVLRGLL----------GVIYDNLGVNGASASLLLKWDAEFLQAQLAALPPDLVILSYGTN 67 (189)
T ss_pred CeeEecCccccccchhhHHHhhh----------ceEEecCccCchhhhhhhccCHHHHHHHHhhCCCCEEEEECCCc
Confidence 577777777653 333333332 344444445555544332111 34456777777777755
No 166
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.33 E-value=1.8e+02 Score=25.59 Aligned_cols=86 Identities=21% Similarity=0.300 Sum_probs=57.1
Q ss_pred ccccchhHHHH----hhcCCcEEEEcCccChhH----HHHHHHHHhcccccCCCCceEEEEeCC-CCCHHHHHHHHHHHH
Q 027632 107 MLLGRFQNVLS----QLFQHRIIRCGGPVEDDM----ANIIVAQLLYLDAVDPNKDIIMYLNSP-GGSVTAGMAIFDTIR 177 (221)
Q Consensus 107 ~~~e~~~di~s----~L~~~RIIfL~G~Idd~~----A~~IiaqLl~Lds~d~~kdI~LyINSP-GGsV~aGlaIYDtmr 177 (221)
.+.|...|++. ..|+.+.--|+|.|++-- -+.-+..|+..=.++..++|.|-+|+. =|+.++ .-|.+.++
T Consensus 82 CVVE~~~Dv~aiE~~~~y~G~YhVL~G~iSPldgigp~~l~i~~L~~Ri~~~~v~EVIlAt~~tvEGe~Ta-~yi~~~lk 160 (195)
T TIGR00615 82 CVVEDPKDVFALEKTKEFRGRYHVLGGHISPLDGIGPEDLTIAALLKRLQEESVKEVILATNPTVEGEATA-LYIARLLQ 160 (195)
T ss_pred EEECCHHHHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCCCchHHHHH-HHHHHHhh
Confidence 35677788864 568888888888776421 122234444321234578899988764 466655 45889999
Q ss_pred hcCCCeEEEEcceech
Q 027632 178 HIRPDVSTVCVGLAAS 193 (221)
Q Consensus 178 ~i~~~V~Tv~~GlAAS 193 (221)
....+|+-+..|+-.+
T Consensus 161 ~~~ikvtRlA~GiP~G 176 (195)
T TIGR00615 161 PFGVKVTRIASGLPVG 176 (195)
T ss_pred hcCCcEEeeeecCCCC
Confidence 8888999988887544
No 167
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=28.71 E-value=28 Score=32.72 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEc-----------ceechHHHHHHhcCCCCcEEeecCcee
Q 027632 166 VTAGMAIFDTIRHIRPDVSTVCV-----------GLAASMGAFLLSAGTKGKYLCFLAWFL 215 (221)
Q Consensus 166 V~aGlaIYDtmr~i~~~V~Tv~~-----------GlAASmAa~IlaAGdkgkR~AlPnS~~ 215 (221)
-.+.++|||+.|.+...+.--.+ -......++||++|. ++|+.-+-+.+
T Consensus 122 ~~a~ltiydm~k~~~~~~~i~~~~l~~k~gg~s~~~~~~i~~IILAGGk-SsRMG~dKaLL 181 (346)
T PRK14500 122 AVAALTIYDMCKSISPHIIIKETRLIEKSGGKADLSQTPLYGLVLTGGK-SRRMGKDKALL 181 (346)
T ss_pred HHHHHHHHHHHhccCCCcEEeeEEEEEecCCcCCCCCCCceEEEEeccc-cccCCCCcccc
Confidence 57889999999999864321111 123356778888885 78986544433
No 168
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=28.69 E-value=1.5e+02 Score=28.51 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=57.9
Q ss_pred cChhHHHHHHHHHhcccccCCCCceEEEE-eCCCCCHHHHHHHHHHHHh-------------------------cCCCeE
Q 027632 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH-------------------------IRPDVS 184 (221)
Q Consensus 131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-NSPGGsV~aGlaIYDtmr~-------------------------i~~~V~ 184 (221)
.++...+.+...|..|..+. .+.+.|=+ |-|||...++..|-+.... ...|+.
T Consensus 213 F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~Plv 291 (406)
T COG0793 213 FGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLV 291 (406)
T ss_pred cccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEE
Confidence 34556677777887888766 78888888 8899999999999888762 124788
Q ss_pred EEEcceechHHHHHHhcCCCCcE
Q 027632 185 TVCVGLAASMGAFLLSAGTKGKY 207 (221)
Q Consensus 185 Tv~~GlAASmAa~IlaAGdkgkR 207 (221)
.++.+-.||++=++..|=...+|
T Consensus 292 vLvn~~SASAsEI~agalqd~~r 314 (406)
T COG0793 292 VLVNEGSASASEIFAGALQDYGR 314 (406)
T ss_pred EEECCCCccHHHHHHHHHHHcCC
Confidence 89999999998887766544444
No 169
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=27.89 E-value=51 Score=27.95 Aligned_cols=29 Identities=34% Similarity=0.764 Sum_probs=20.5
Q ss_pred CC-CCHHHHH------HHHHHHHhcCCCeEEEEcce
Q 027632 162 PG-GSVTAGM------AIFDTIRHIRPDVSTVCVGL 190 (221)
Q Consensus 162 PG-GsV~aGl------aIYDtmr~i~~~V~Tv~~Gl 190 (221)
|| |...+.+ .+.+.++....||-.+|.|+
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~ 80 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGM 80 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHH
Confidence 88 7776664 35677777777877777664
No 170
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=26.44 E-value=4.1e+02 Score=22.92 Aligned_cols=22 Identities=14% Similarity=-0.088 Sum_probs=16.7
Q ss_pred CCeEEEEcceechHHHHHHhcC
Q 027632 181 PDVSTVCVGLAASMGAFLLSAG 202 (221)
Q Consensus 181 ~~V~Tv~~GlAASmAa~IlaAG 202 (221)
.||+.++.+..+|+|-.++.+-
T Consensus 158 ~pv~vL~~~~T~SaaE~~a~~l 179 (250)
T cd07563 158 KPVYVLTSPVTFSAAEEFAYAL 179 (250)
T ss_pred CCEEEEeCCCcCcHHHHHHHHH
Confidence 4788888888888887777543
No 171
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=24.77 E-value=2.9e+02 Score=20.36 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=48.8
Q ss_pred cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC---CCHHHHHHHHHHHHhcC-CCeEEEEcceechHHHHH
Q 027632 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG---GSVTAGMAIFDTIRHIR-PDVSTVCVGLAASMGAFL 198 (221)
Q Consensus 123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG---GsV~aGlaIYDtmr~i~-~~V~Tv~~GlAASmAa~I 198 (221)
.++.+.|+++...++.+.++++..-.+...+.+.+ +--| =+.+....+.+..+..+ ..+..+..|+-....-++
T Consensus 12 ~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvl--Dls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l 89 (109)
T cd07041 12 LVLPLIGDLDDERAEQLQERLLEAISRRRARGVII--DLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTL 89 (109)
T ss_pred EEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEE--ECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 46789999999999999888764322222344444 3333 22333444555555543 356777777777777777
Q ss_pred HhcCC
Q 027632 199 LSAGT 203 (221)
Q Consensus 199 laAGd 203 (221)
-.+|-
T Consensus 90 ~~~gl 94 (109)
T cd07041 90 VELGI 94 (109)
T ss_pred HHhCC
Confidence 77664
No 172
>PRK06091 membrane protein FdrA; Validated
Probab=23.40 E-value=1.3e+02 Score=30.46 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=48.9
Q ss_pred cEEEEcCc-cChhH-HHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceec
Q 027632 123 RIIRCGGP-VEDDM-ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 192 (221)
Q Consensus 123 RIIfL~G~-Idd~~-A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAA 192 (221)
..|-+|+. +.++. --.+.+-|.+|..+..++-|.+|+--|+-.+.. .+.++++...+||.++-.|--.
T Consensus 222 ~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 222 HAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred EEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCc
Confidence 35777777 11111 112445566777777789999999888877775 8889888899999999988644
No 173
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=22.80 E-value=1.6e+02 Score=26.81 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=38.1
Q ss_pred cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEE-E-eCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 027632 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMY-L-NSPGGSVTAGMAIFDTIRHIRPDVSTVC 187 (221)
Q Consensus 123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~Ly-I-NSPGGsV~aGlaIYDtmr~i~~~V~Tv~ 187 (221)
||+|+|.-+...--..+...|-.|..+.+. |+.+- - |..|| ..-...+++.|+....+|.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~-D~vIaNgEn~~gG-~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQA-DLVIANGENTTHG-KGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCC-CEEEEcCcccCCC-CCCCHHHHHHHHhcCCCEEEcc
Confidence 688998877764344444444455544322 22221 2 44455 3445789999999998888873
No 174
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=22.44 E-value=1.5e+02 Score=25.26 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=23.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCeE
Q 027632 157 MYLNSPGGSVTAGMAIFDTIRHIRPDVS 184 (221)
Q Consensus 157 LyINSPGGsV~aGlaIYDtmr~i~~~V~ 184 (221)
+.|| ||+-.--..+|.|+|+.+..|+.
T Consensus 70 IvIN-pga~THTSvAlrDAi~av~iP~v 96 (146)
T COG0757 70 IVIN-PGAYTHTSVALRDAIAAVSIPVV 96 (146)
T ss_pred EEEc-CccchhhHHHHHHHHHhcCCCEE
Confidence 6677 99999999999999999987655
No 175
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=22.26 E-value=3.6e+02 Score=21.64 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=52.8
Q ss_pred cccchhHHHH----hhcCCcEEEEcCccChh----HHHHHHHHHhcccccCCCCceEEEEeCC-CCCHHHHHHHHHHHHh
Q 027632 108 LLGRFQNVLS----QLFQHRIIRCGGPVEDD----MANIIVAQLLYLDAVDPNKDIIMYLNSP-GGSVTAGMAIFDTIRH 178 (221)
Q Consensus 108 ~~e~~~di~s----~L~~~RIIfL~G~Idd~----~A~~IiaqLl~Lds~d~~kdI~LyINSP-GGsV~aGlaIYDtmr~ 178 (221)
+.|...|+.. ..|+.+.-.|+|.|++- .-+.-+..|+..-.+...+.|.|-.|.- =|..++ .-|.+.++.
T Consensus 5 VVE~~~Dv~~iE~~~~y~G~Y~VL~G~ispl~gi~p~~l~i~~L~~ri~~~~i~EVIlA~~pt~EGe~Ta-~yi~~~l~~ 83 (112)
T cd01025 5 VVEEPRDVLAIEESGEYRGLYHVLGGLISPLDGIGPDDLNIDKLLERIAKGQVKEVILATNPTVEGEATA-LYIAKLLKD 83 (112)
T ss_pred EECCHHHHHHHHhhCccceEEEEeCCCcCCCCCCCccccCHHHHHHHHhcCCCcEEEEecCCCchHHHHH-HHHHHHHhH
Confidence 3455666643 45788877788888752 1123344444322233467788877654 355554 457888888
Q ss_pred cCCCeEEEEcceech
Q 027632 179 IRPDVSTVCVGLAAS 193 (221)
Q Consensus 179 i~~~V~Tv~~GlAAS 193 (221)
...+|+=+..|+-.+
T Consensus 84 ~~~kvsRlA~GiP~G 98 (112)
T cd01025 84 FGVKVTRLAQGIPVG 98 (112)
T ss_pred cCCCeEEEEEcCCCC
Confidence 888888888887543
No 176
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=21.73 E-value=2.5e+02 Score=25.66 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=41.5
Q ss_pred CccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEE
Q 027632 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST 185 (221)
Q Consensus 129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~T 185 (221)
..|-..+..++..++..++ .....+.+|+||+.+.++.++-+.++..+..+.|
T Consensus 55 PaiaaG~~~el~r~~~~~d----gr~l~VvVse~~a~~da~sal~~lir~~G~y~~t 107 (245)
T COG3904 55 PAIAAGTPAELKRTLKTLD----GRQLPVVVSEPGANVDAASALGRLIRKAGLYIAT 107 (245)
T ss_pred CcccCCCHHHHHHhhhhcc----CceeeEEEcCCCCCccHHHHHHHHHhccCceeEE
Confidence 4444444455666666555 4678999999999999999999999999988887
No 177
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=21.72 E-value=1e+02 Score=22.73 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=18.8
Q ss_pred cEEEEcCccChhHHHHHHHHHhc
Q 027632 123 RIIRCGGPVEDDMANIIVAQLLY 145 (221)
Q Consensus 123 RIIfL~G~Idd~~A~~IiaqLl~ 145 (221)
.++.+.|+++-..+..+.+++..
T Consensus 10 ~ii~~~G~l~f~~~~~~~~~l~~ 32 (100)
T cd06844 10 WVVRLEGELDHHSVEQFKEELLH 32 (100)
T ss_pred EEEEEEEEecHhhHHHHHHHHHH
Confidence 46888999999888888888764
No 178
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=21.61 E-value=1.1e+02 Score=27.29 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=34.2
Q ss_pred HHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC
Q 027632 136 ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR 180 (221)
Q Consensus 136 A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~ 180 (221)
...|.++.+.+..-...|.+-+|+|.++|.|.-+.-|=+++|.=+
T Consensus 31 s~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~gK 75 (200)
T KOG3093|consen 31 SEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDGK 75 (200)
T ss_pred HHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcCC
Confidence 444556666544444579999999999999999998888888744
No 179
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=21.40 E-value=3.7e+02 Score=20.42 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=46.5
Q ss_pred EEEEcCccChhHHHHHHHHHh-cccccCCCCceEEEEeCCCCCHHHHH---HHHHHHHhcCC-CeEEEEcceechHHHHH
Q 027632 124 IIRCGGPVEDDMANIIVAQLL-YLDAVDPNKDIIMYLNSPGGSVTAGM---AIFDTIRHIRP-DVSTVCVGLAASMGAFL 198 (221)
Q Consensus 124 IIfL~G~Idd~~A~~IiaqLl-~Lds~d~~kdI~LyINSPGGsV~aGl---aIYDtmr~i~~-~V~Tv~~GlAASmAa~I 198 (221)
++.+.|+||...+..+.+.+. .+...+ .-.+.|+.-|=+..+.. .+.+.++..+. .+..+..|+=-..+-.+
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~~---~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~v~~~~ 92 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAASG---ARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEVARTL 92 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcCC---CcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 688999999999999999888 444432 23377777774443332 23333333332 25666666666666555
Q ss_pred HhcC
Q 027632 199 LSAG 202 (221)
Q Consensus 199 laAG 202 (221)
-..|
T Consensus 93 ~~~g 96 (117)
T COG1366 93 ELTG 96 (117)
T ss_pred HHhC
Confidence 5554
No 180
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=21.38 E-value=2.4e+02 Score=26.87 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=52.7
Q ss_pred HHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC
Q 027632 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR 180 (221)
Q Consensus 114 di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~ 180 (221)
|+.+.+.+..+|-+..+.++++.+.+-.+++.. .|+=.+.+|.-=|.+-.-.+++++++.=+
T Consensus 210 d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~-----mk~g~vlVN~aRG~iide~~l~eaL~sG~ 271 (336)
T KOG0069|consen 210 DIEELLANSDVIVVNCPLTKETRHLINKKFIEK-----MKDGAVLVNTARGAIIDEEALVEALKSGK 271 (336)
T ss_pred CHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHh-----cCCCeEEEeccccccccHHHHHHHHhcCC
Confidence 899999999999999999999999888877742 35566778999999999999999998643
No 181
>PRK14635 hypothetical protein; Provisional
Probab=21.04 E-value=2e+02 Score=24.20 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=23.1
Q ss_pred CccChhHHHHHHHHHh-cccccCCCCceEEEEeCCCCC
Q 027632 129 GPVEDDMANIIVAQLL-YLDAVDPNKDIIMYLNSPGGS 165 (221)
Q Consensus 129 G~Idd~~A~~IiaqLl-~Lds~d~~kdI~LyINSPGGs 165 (221)
|.|+=+.+..+...+- .||..++..+.+|-+.|||=+
T Consensus 48 ~gv~lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGld 85 (162)
T PRK14635 48 GSVSLLECEQVSRKLKEELERISPDLDFTLKVSSAGAE 85 (162)
T ss_pred CCcCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCC
Confidence 3466554444444443 245555567899999999944
No 182
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=20.89 E-value=65 Score=27.96 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=29.7
Q ss_pred ccChhHHHHHHHHHhc------cccc-CCCCceEEEEeCCCCCHHHHHHHHH
Q 027632 130 PVEDDMANIIVAQLLY------LDAV-DPNKDIIMYLNSPGGSVTAGMAIFD 174 (221)
Q Consensus 130 ~Idd~~A~~IiaqLl~------Lds~-d~~kdI~LyINSPGGsV~aGlaIYD 174 (221)
.++++.+..++.+++. +... .+-.++.=.++||||.--+|+...+
T Consensus 183 Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spgGtT~~gl~~le 234 (258)
T PRK06476 183 GLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKGGLNEQVLNDFS 234 (258)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCCchHHHHHHHHH
Confidence 3566667777776664 2222 2224566678999999999986665
No 183
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=20.58 E-value=3.9e+02 Score=25.15 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=47.2
Q ss_pred cEEEEcCcc--ChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceec
Q 027632 123 RIIRCGGPV--EDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 192 (221)
Q Consensus 123 RIIfL~G~I--dd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAA 192 (221)
.+|-+++.- +-+ +.+-|.+|..++..+-|.||+-.-|-...++-...+. ...++||..+..|..+
T Consensus 198 ~~VsiGnd~~~g~~----~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 198 TCVGIGGDPFNGTN----FIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEEeCCCCCCCCC----HHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 468888874 433 4555667777777899999999877776677665555 2346899999998876
Done!