BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027633
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TSC3|NEK5_MOUSE Serine/threonine-protein kinase Nek5 OS=Mus musculus GN=Nek5 PE=2
SV=1
Length = 627
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 31 VLYTASFQEKEDNFV------------QYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRY 78
V + +SFQE F+ + Q + V++S IL W + + + L R
Sbjct: 60 VTFFSSFQENGRLFIVMEYCDGGDLMQRIQRQRGVMFSEDQILCWFVQISLGLKHIHDRK 119
Query: 79 ILRKDIRSRKLFLTPNAIVYKV 100
IL +DI+S+ +FL+ N +V K+
Sbjct: 120 ILHRDIKSQNIFLSKNGMVAKL 141
>sp|Q96PY6|NEK1_HUMAN Serine/threonine-protein kinase Nek1 OS=Homo sapiens GN=NEK1 PE=1
SV=2
Length = 1258
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 26 EDDDDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIR 85
E++ + + E D F + + VL+ IL W + + + L R IL +DI+
Sbjct: 71 EENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIK 130
Query: 86 SRKLFLTPNAIV 97
S+ +FLT + V
Sbjct: 131 SQNIFLTKDGTV 142
>sp|Q5E943|CA043_BOVIN Uncharacterized protein C1orf43 homolog OS=Bos taurus PE=2 SV=1
Length = 253
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 56 SLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKE 115
+++L++A+G +F+LL++ V+R I+R ++SR+ P+ PV LK+E
Sbjct: 12 NVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRR---GPHV-------PVGHNAPKDLKEE 61
Query: 116 KHVLLPSVQDIVIE 129
+ L VQDI E
Sbjct: 62 IDIRLSKVQDIKYE 75
>sp|Q9BWL3|CA043_HUMAN Uncharacterized protein C1orf43 OS=Homo sapiens GN=C1orf43 PE=2
SV=1
Length = 253
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 56 SLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKE 115
+++L++A+G +F+LL++ V+R I+R ++SR+ P+ PV LK+E
Sbjct: 12 NVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRR---GPHV-------PVGHNAPKDLKEE 61
Query: 116 KHVLLPSVQDIVIE 129
+ L VQDI E
Sbjct: 62 IDIRLSRVQDIKYE 75
>sp|Q8R092|CA043_MOUSE Uncharacterized protein C1orf43 homolog OS=Mus musculus PE=2 SV=1
Length = 253
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 56 SLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKE 115
+++L++A+G +F+LL++ V+R I+R ++SR+ P+ PV LK+E
Sbjct: 12 NVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRR---GPHV-------PVGHNAPKDLKEE 61
Query: 116 KHVLLPSVQDIVIE 129
+ L VQDI E
Sbjct: 62 IDIRLSRVQDIKYE 75
>sp|Q5XII8|CA043_RAT Uncharacterized protein C1orf43 homolog OS=Rattus norvegicus PE=2
SV=1
Length = 235
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 56 SLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKE 115
+++L++A+G +F+LL++ V+R I+R ++SR+ P+ PV LK+E
Sbjct: 12 NVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRR---GPHV-------PVGHNAPKDLKEE 61
Query: 116 KHVLLPSVQDIVIE 129
+ L VQDI E
Sbjct: 62 IDIRLSRVQDIKYE 75
>sp|Q5RF08|CA043_PONAB Uncharacterized protein C1orf43 homolog OS=Pongo abelii PE=2 SV=1
Length = 189
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 56 SLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKE 115
+++L++A+G +F+LL++ V+R I+R ++SR+ P+ PV LK+E
Sbjct: 12 NVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRR---GPHV-------PVGHNAPKDLKEE 61
Query: 116 KHVLLPSVQDIVIE 129
+ L VQDI E
Sbjct: 62 IDIRLSRVQDIKYE 75
>sp|P51954|NEK1_MOUSE Serine/threonine-protein kinase Nek1 OS=Mus musculus GN=Nek1 PE=1
SV=2
Length = 1203
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 26 EDDDDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIR 85
E++ + + E D F + + L+ IL W + + + L R IL +DI+
Sbjct: 71 EENGSLYIVMDYCEGGDLFKRINAQKGALFQEDQILDWFVQICLALKHVHDRKILHRDIK 130
Query: 86 SRKLFLTPNAIV 97
S+ +FLT + V
Sbjct: 131 SQNIFLTKDGTV 142
>sp|P75368|SYA_MYCPN Alanine--tRNA ligase OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=alaS PE=3 SV=1
Length = 900
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 34 TASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRR 77
T SF+++ ++ V ++TA LY I A IGLF Y PV++
Sbjct: 441 TLSFEKQNEHLVNFKTASEFLYEANEITAKVIGLFDEQYQPVQK 484
>sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1
SV=1
Length = 2249
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 109 FGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDF 168
F L + + +LL SV+ IV+E + +++ EN + PP+D +I G+A P
Sbjct: 121 FLYLLETRELLLSSVELIVLEDCHDSAVYQRIRPLFENHIMPAPPADRPRILGLAGPLHS 180
Query: 169 RKAVLTRLSNM 179
L +LS M
Sbjct: 181 AGCELQQLSAM 191
>sp|B5VS87|GEP3_YEAS6 Genetic interactor of prohibitins 3, mitochondrial OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=GEP3 PE=3 SV=1
Length = 556
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 121 PSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTRLSNMT 180
P+V + LQ G Y ++I++ G PS++V + NP +F K +S++
Sbjct: 222 PNVGKSTLINTLLQKYLG-YKVKIDSTGKINSPSEEVMQEAFTNPKNFFKIQAAGVSHIP 280
Query: 181 NEVFSREASAI 191
N S +A +
Sbjct: 281 NLTRSGQAYQV 291
>sp|E7KI83|GEP3_YEASA Genetic interactor of prohibitins 3, mitochondrial OS=Saccharomyces
cerevisiae (strain AWRI796) GN=GEP3 PE=3 SV=1
Length = 596
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 121 PSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRK---AVLTRLS 177
P+V + LQ G Y ++I++ G PS++V + NP +F K A ++ +
Sbjct: 222 PNVGKSTLINTLLQKYLG-YKVKIDSTGKINSPSEEVMQEAFTNPKNFFKIQAAGVSHIP 280
Query: 178 NMTNEV 183
N+T V
Sbjct: 281 NLTRSV 286
>sp|E7QKV3|GEP3_YEASZ Genetic interactor of prohibitins 3, mitochondrial OS=Saccharomyces
cerevisiae (strain Zymaflore VL3) GN=GEP3 PE=3 SV=1
Length = 556
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 121 PSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRK---AVLTRLS 177
P+V + LQ G Y ++I++ G PS++V + NP +F K A ++ +
Sbjct: 222 PNVGKSTLINTLLQKYLG-YKVKIDSTGKINSPSEEVMQEAFTNPKNFFKIQAAGVSHIP 280
Query: 178 NMTNEV 183
N+T V
Sbjct: 281 NLTRSV 286
>sp|Q08622|GEP3_YEAST Genetic interactor of prohibitins 3, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GEP3 PE=1
SV=1
Length = 556
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 121 PSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRK---AVLTRLS 177
P+V + LQ G Y ++I++ G PS++V + NP +F K A ++ +
Sbjct: 222 PNVGKSTLINTLLQKYLG-YKVKIDSTGKINSPSEEVMQEAFTNPKNFFKIQAAGVSHIP 280
Query: 178 NMTNEV 183
N+T V
Sbjct: 281 NLTRSV 286
>sp|C8ZGW1|GEP3_YEAS8 Genetic interactor of prohibitins 3, mitochondrial OS=Saccharomyces
cerevisiae (strain Lalvin EC1118 / Prise de mousse)
GN=GEP3 PE=3 SV=1
Length = 556
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 121 PSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRK---AVLTRLS 177
P+V + LQ G Y ++I++ G PS++V + NP +F K A ++ +
Sbjct: 222 PNVGKSTLINTLLQKYLG-YKVKIDSTGKINSPSEEVMQEAFTNPKNFFKIQAAGVSHIP 280
Query: 178 NMTNEV 183
N+T V
Sbjct: 281 NLTRSV 286
>sp|A6ZP48|GEP3_YEAS7 Genetic interactor of prohibitins 3, mitochondrial OS=Saccharomyces
cerevisiae (strain YJM789) GN=GEP3 PE=3 SV=1
Length = 556
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 121 PSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRK---AVLTRLS 177
P+V + LQ G Y ++I++ G PS++V + NP +F K A ++ +
Sbjct: 222 PNVGKSTLINTLLQKYLG-YKVKIDSTGKINSPSEEVMQEAFTNPKNFFKIQAAGVSHIP 280
Query: 178 NMTNEV 183
N+T V
Sbjct: 281 NLTRSV 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,397,848
Number of Sequences: 539616
Number of extensions: 3079203
Number of successful extensions: 7959
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7954
Number of HSP's gapped (non-prelim): 22
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)