Query 027633
Match_columns 221
No_of_seqs 56 out of 58
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 12:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3402 Uncharacterized conser 99.3 4E-12 8.6E-17 107.6 8.8 76 88-177 78-155 (161)
2 PF03703 bPH_2: Bacterial PH d 99.3 5.4E-12 1.2E-16 88.6 6.3 76 87-171 4-79 (80)
3 COG3428 Predicted membrane pro 98.8 2E-09 4.3E-14 103.8 3.2 87 51-158 44-130 (494)
4 COG3428 Predicted membrane pro 98.2 1.5E-05 3.2E-10 77.5 10.6 106 53-180 236-343 (494)
5 PF14470 bPH_3: Bacterial PH d 87.0 5.5 0.00012 28.7 7.7 66 88-171 25-90 (96)
6 PF06713 bPH_4: Bacterial PH d 75.7 14 0.00031 26.9 6.4 70 88-174 2-72 (74)
7 PF02893 GRAM: GRAM domain; I 60.8 25 0.00054 24.5 4.9 39 86-130 31-69 (69)
8 PF07263 DMP1: Dentin matrix p 52.9 5.9 0.00013 39.6 0.8 20 55-78 3-22 (514)
9 KOG3156 Uncharacterized membra 41.6 34 0.00073 31.1 3.7 27 44-70 192-218 (220)
10 PF10181 PIG-H: GPI-GlcNAc tra 37.8 60 0.0013 23.8 3.9 25 108-132 20-44 (69)
11 PF07798 DUF1640: Protein of u 36.2 49 0.0011 27.7 3.7 27 45-71 150-176 (177)
12 PRK10833 putative assembly pro 35.5 62 0.0013 31.8 4.8 62 51-118 5-70 (617)
13 PF10882 bPH_5: Bacterial PH d 33.9 36 0.00079 25.2 2.3 42 88-140 2-45 (100)
14 PF11605 Vps36_ESCRT-II: Vacuo 32.5 62 0.0014 24.9 3.4 44 83-133 34-77 (89)
15 PF08000 bPH_1: Bacterial PH d 31.9 2.9E+02 0.0062 22.6 7.6 79 88-175 43-122 (124)
16 PF10149 TM231: Transmembrane 31.8 47 0.001 31.2 3.1 30 28-64 266-296 (320)
17 PF15050 SCIMP: SCIMP protein 31.4 84 0.0018 26.7 4.2 20 52-71 9-29 (133)
18 PRK00523 hypothetical protein; 31.3 87 0.0019 24.1 4.0 18 49-66 4-21 (72)
19 CHL00118 atpG ATP synthase CF0 29.2 86 0.0019 25.6 3.9 20 57-78 31-50 (156)
20 PF12273 RCR: Chitin synthesis 28.7 43 0.00092 26.7 2.0 6 52-57 2-7 (130)
21 PF09624 DUF2393: Protein of u 27.8 1.3E+02 0.0028 24.1 4.7 43 77-122 38-80 (149)
22 PF06459 RR_TM4-6: Ryanodine R 27.2 80 0.0017 29.1 3.7 18 56-73 175-192 (274)
23 PF06161 DUF975: Protein of un 26.9 1E+02 0.0022 26.2 4.2 56 33-88 185-243 (243)
24 PF11014 DUF2852: Protein of u 26.4 84 0.0018 25.9 3.4 22 52-73 11-33 (115)
25 PF12955 DUF3844: Domain of un 26.1 91 0.002 25.2 3.4 40 29-68 50-89 (103)
26 PF06017 Myosin_TH1: Myosin ta 25.9 93 0.002 26.3 3.7 80 82-180 63-147 (199)
27 cd01244 PH_RasGAP_CG9209 RAS_G 25.8 1.3E+02 0.0028 23.4 4.1 42 82-131 19-60 (98)
28 smart00568 GRAM domain in gluc 24.9 1.4E+02 0.003 20.1 3.8 35 87-127 24-58 (61)
29 PF06679 DUF1180: Protein of u 24.8 82 0.0018 27.2 3.2 32 60-91 99-131 (163)
30 KOG0158 Cytochrome P450 CYP3/C 23.8 32 0.0007 34.1 0.6 37 134-183 66-102 (499)
31 PRK02542 photosystem I assembl 23.4 5.4E+02 0.012 23.0 8.0 57 102-171 111-170 (188)
32 PRK08455 fliL flagellar basal 22.9 56 0.0012 28.1 1.8 20 164-183 125-144 (182)
33 COG1531 Uncharacterized protei 22.0 47 0.001 25.8 1.1 33 93-131 37-69 (77)
34 PF08512 Rtt106: Histone chape 21.7 3.2E+02 0.0069 20.8 5.6 46 112-163 27-74 (95)
35 PF05569 Peptidase_M56: BlaR1 21.6 2.5E+02 0.0055 24.7 5.7 22 101-122 165-187 (299)
36 PRK13461 F0F1 ATP synthase sub 21.5 1.6E+02 0.0034 24.0 4.1 30 47-79 5-34 (159)
37 PRK14471 F0F1 ATP synthase sub 20.9 1.6E+02 0.0034 24.1 4.0 30 47-79 8-37 (164)
38 PF11289 DUF3092: Protein of u 20.4 3.3E+02 0.0072 25.3 6.3 27 103-129 143-169 (273)
No 1
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4e-12 Score=107.56 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=62.6
Q ss_pred eeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCCCCCCeEeecC--CCh
Q 027633 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGV--ANP 165 (221)
Q Consensus 88 kl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETaG~s~~~~~di~i~Gv--~~p 165 (221)
.|.+.|+++--+ .|++ ++.++.||+-|||||+.+||||+|.||+.++.|.|||. +..|+|+ +.+
T Consensus 78 ry~v~~~el~iq--~GiL------v~~r~viP~~RVQhVDt~~GPL~R~~~La~vti~TAss------~~~IeaL~~~eA 143 (161)
T COG3402 78 RYEVEEDELDIQ--HGIL------VRTRTVIPYVRVQHVDTEQGPLLRRYGLATVTITTASS------DHTIEALDREEA 143 (161)
T ss_pred eeecccceEEee--ccEE------EEEEEEeeEEEEEeeecccChHHHHhCcceEEEEeccc------cceecccCHHHH
Confidence 566666666554 9999 89999999999999999999999999999999999986 4455555 578
Q ss_pred hHHHHHHHHHHh
Q 027633 166 SDFRKAVLTRLS 177 (221)
Q Consensus 166 ~~fRk~Il~~~~ 177 (221)
+.+|+.+...+.
T Consensus 144 drlr~~l~~la~ 155 (161)
T COG3402 144 DRLRERLANLAR 155 (161)
T ss_pred HHHHHHHHHHHH
Confidence 888888765543
No 2
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=99.30 E-value=5.4e-12 Score=88.58 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=64.0
Q ss_pred ceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCCCCCCeEeecCCChh
Q 027633 87 RKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPS 166 (221)
Q Consensus 87 Rkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETaG~s~~~~~di~i~Gv~~p~ 166 (221)
-+|.+++..++.+ +|++ .+++..+|+++||+|.+.|||+||.||+.+++++++|++... ..+...++.+|+
T Consensus 4 ~~y~i~~~~l~i~--~G~~------~~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~-~~i~~~~~~~a~ 74 (80)
T PF03703_consen 4 TGYTITDDRLIIR--SGLF------SKRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEK-IEIPFLSIEDAE 74 (80)
T ss_pred EEEEEECCEEEEE--ECeE------EEEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCce-eEEecCCHHHHH
Confidence 4689999999997 8999 899999999999999999999999999999999999999542 345555555666
Q ss_pred HHHHH
Q 027633 167 DFRKA 171 (221)
Q Consensus 167 ~fRk~ 171 (221)
++++.
T Consensus 75 ~i~~~ 79 (80)
T PF03703_consen 75 EIYDW 79 (80)
T ss_pred HHHhh
Confidence 66653
No 3
>COG3428 Predicted membrane protein [Function unknown]
Probab=98.82 E-value=2e-09 Score=103.77 Aligned_cols=87 Identities=16% Similarity=0.287 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEee
Q 027633 51 QWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQ 130 (221)
Q Consensus 51 ~wl~~slllilawgvgilmLL~lPirryi~~~d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~Q 130 (221)
.|..+.+..+++|.|.- .+-| ..=+|.++++++.-+ +|++ +|+++.+|++|||.|+..|
T Consensus 44 ~w~~~~~vv~vi~~i~~-ii~w------------~~~~Yried~~~~l~--~Gi~------~rk~r~i~~~RIQsVd~t~ 102 (494)
T COG3428 44 FWGGAALVVLVIFLILQ-IIKW------------ITFTYRIEDEEVRLQ--TGIF------SRKKRYIPIDRIQSVDTTA 102 (494)
T ss_pred eeeeehhhHHHHHHHHh-hhEE------------EEEEEEEecceEEEE--eeEE------eecceecchHhhhhhHHHH
Confidence 37777666677776654 1222 223688888888876 9999 9999999999999999999
Q ss_pred hhhhhhhcceeEEEEeccCCCCCCCCeE
Q 027633 131 GYLQSLFGVYSLRIENVGVRRPPSDDVQ 158 (221)
Q Consensus 131 G~Lqr~FGl~slrIETaG~s~~~~~di~ 158 (221)
|.++|+||+..++|||||+++.+.+++.
T Consensus 103 ~lv~rlfgl~~l~IeTaGg~~eae~~~~ 130 (494)
T COG3428 103 GLVARLFGLVVLRIETAGGGGEAEAELV 130 (494)
T ss_pred HHHHHhhccEEEEEEcCCCCCccceeee
Confidence 9999999999999999998754455443
No 4
>COG3428 Predicted membrane protein [Function unknown]
Probab=98.16 E-value=1.5e-05 Score=77.52 Aligned_cols=106 Identities=24% Similarity=0.405 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehh
Q 027633 53 VLYSLLLILAWGIGLFMLLYLPVRRYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGY 132 (221)
Q Consensus 53 l~~slllilawgvgilmLL~lPirryi~~~d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~ 132 (221)
+++.++++.+|++++...+. ||- .|+-+|. +++.++ +||.+ -|++.|+|+.|||-|.++|.+
T Consensus 236 v~~vl~llvaW~~s~~~tm~----rf~---~fq~~~~---~~~L~i--erGLl------err~~Tipl~RlqaV~l~esl 297 (494)
T COG3428 236 VLAVLLLLVAWLLSIALTMF----RFY---GFQVMKE---NGVLHI--ERGLL------ERRKVTIPLRRLQAVTLRESL 297 (494)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hhh---ceEEEec---CCEEEE--Eeeee------ecccceeehhheEEEEeechH
Confidence 34444557788888865554 341 2222222 444444 59999 899999999999999999999
Q ss_pred hhhhhcceeEEEEeccCCC-C-CCCCeEeecCCChhHHHHHHHHHHhhhh
Q 027633 133 LQSLFGVYSLRIENVGVRR-P-PSDDVQIQGVANPSDFRKAVLTRLSNMT 180 (221)
Q Consensus 133 Lqr~FGl~slrIETaG~s~-~-~~~di~i~Gv~~p~~fRk~Il~~~~~~~ 180 (221)
|.|+||..++.++++|..+ . .+.+..+. |-.=|++++.-+.++.
T Consensus 298 lrrl~G~~~v~v~~aG~~gd~~~sgs~~ll----P~~~k~~v~~~L~~~~ 343 (494)
T COG3428 298 LRRLFGYAAVDVVTAGVHGDSQSSGSTPLL----PFIKKEAVLKLLRENT 343 (494)
T ss_pred HHHhhccEEEEEEEecCCCCCcCCCceecc----ccccHHHHHHHHHHhC
Confidence 9999999999999999332 2 34444443 3333566666666665
No 5
>PF14470 bPH_3: Bacterial PH domain
Probab=86.99 E-value=5.5 Score=28.66 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=45.0
Q ss_pred eeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCCCCCCeEeecCCChhH
Q 027633 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSD 167 (221)
Q Consensus 88 kl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETaG~s~~~~~di~i~Gv~~p~~ 167 (221)
-+++|..-+.+. .++.+ +| .....+||+.|++|....|.+. .++.|++.| ..+++.-+ +.++
T Consensus 25 ~l~~TnkRlif~-~~~~~---~~--~~~~~i~y~~I~~v~~~~g~~~-----~~i~i~~~~------~~~~i~~i-~k~~ 86 (96)
T PF14470_consen 25 VLVLTNKRLIFY-SKGMF---GG--KKFESIPYDDITSVSFKKGILG-----GKITIETNG------EKIKIDNI-QKGD 86 (96)
T ss_pred EEEEeCCEEEEE-EcccC---CC--ceEEEEEhhheEEEEEEccccc-----cEEEEEECC------EEEEEEEc-CHHH
Confidence 577788777775 33222 23 6678999999999999999833 568888822 45666666 5555
Q ss_pred HHHH
Q 027633 168 FRKA 171 (221)
Q Consensus 168 fRk~ 171 (221)
+++.
T Consensus 87 ~~~~ 90 (96)
T PF14470_consen 87 VKEF 90 (96)
T ss_pred HHHH
Confidence 5443
No 6
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=75.68 E-value=14 Score=26.94 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=49.6
Q ss_pred eeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehhhhhhh-cceeEEEEeccCCCCCCCCeEeecCCChh
Q 027633 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLF-GVYSLRIENVGVRRPPSDDVQIQGVANPS 166 (221)
Q Consensus 88 kl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~F-Gl~slrIETaG~s~~~~~di~i~Gv~~p~ 166 (221)
+|.|+++....| .| + +++. +|++.|++|.=..+|+.+.. .+..|.|+..+. +.+.|. -.|.+
T Consensus 2 ~Y~i~~~~L~I~--~G-~------~~~~--I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~~~-----~~i~Is-P~~~~ 64 (74)
T PF06713_consen 2 KYIIEDDYLIIK--CG-F------FKKK--IPIEDIRSIRPTKNPLSSPALSLDRLEIYYGKY-----KSILIS-PKDKE 64 (74)
T ss_pred EEEEeCCEEEEE--EC-C------cccE--EEhHHccEEEecCCccccccccccEEEEEECCC-----CEEEEE-CCCHH
Confidence 356666666665 77 4 4665 99999999999999988655 467788887622 334444 67888
Q ss_pred HHHHHHHH
Q 027633 167 DFRKAVLT 174 (221)
Q Consensus 167 ~fRk~Il~ 174 (221)
+|-+++..
T Consensus 65 ~FI~~L~k 72 (74)
T PF06713_consen 65 EFIAELQK 72 (74)
T ss_pred HHHHHHHh
Confidence 88777654
No 7
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=60.84 E-value=25 Score=24.45 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=27.3
Q ss_pred cceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEee
Q 027633 86 SRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQ 130 (221)
Q Consensus 86 sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~Q 130 (221)
.=++|||++-+.|+-...-. ...-..+||..|.+|..+|
T Consensus 31 ~G~LyiT~~~lcF~s~~~~~------~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 31 QGRLYITNNYLCFYSNKFGS------KTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp EEEEEEESSEEEEEESSSSS-------E-EEEEEGGGEEEEEEE-
T ss_pred eeEEEECCCEEEEEECCCCC------ceEEEEEEhHheeEEEEeC
Confidence 33999999999997212222 2246899999999998765
No 8
>PF07263 DMP1: Dentin matrix protein 1 (DMP1); InterPro: IPR009889 This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21 []. DMP1 is a bone and teeth specific protein initially identified from mineralised dentin. DMP1 is primarily localised in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca2+ surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralised matrix formation extracellularly, at later stages of osteoblast maturation []. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown [].; GO: 0001503 ossification, 0030198 extracellular matrix organization
Probab=52.92 E-value=5.9 Score=39.58 Aligned_cols=20 Identities=50% Similarity=0.984 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 027633 55 YSLLLILAWGIGLFMLLYLPVRRY 78 (221)
Q Consensus 55 ~slllilawgvgilmLL~lPirry 78 (221)
++|||+++||+ -+++|+.||
T Consensus 3 tsill~~lwgl----s~alpvary 22 (514)
T PF07263_consen 3 TSILLMFLWGL----SCALPVARY 22 (514)
T ss_pred ceeHHHHHHHh----hcccchhhh
Confidence 57888999995 478899999
No 9
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=41.63 E-value=34 Score=31.15 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=20.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 027633 44 FVQYQTAQWVLYSLLLILAWGIGLFML 70 (221)
Q Consensus 44 ~vKY~tv~wl~~slllilawgvgilmL 70 (221)
-+||+|++|+.-++.-+.|.+++++-|
T Consensus 192 s~K~qt~qw~~g~v~~~~Al~La~~r~ 218 (220)
T KOG3156|consen 192 SVKTQTIQWLIGVVTGTSALVLAYLRL 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 369999999988776677777766544
No 10
>PF10181 PIG-H: GPI-GlcNAc transferase complex, PIG-H component; InterPro: IPR019328 This entry represents a conserved domain found in PIG-H proteins. PIG-H is a family of conserved proteins that complexes with three other proteins to form the GPI-GnT (glycosylphosphatidylinositol anchor biosynthesis transferase) complex. It appears to be a peripheral membrane protein that faces the cytoplasm and which is involved in the first step in GPI anchor formation. ; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity
Probab=37.82 E-value=60 Score=23.82 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.1
Q ss_pred cccceeeeEEEeCCCeeeEEEeehh
Q 027633 108 CFGVLKKEKHVLLPSVQDIVIEQGY 132 (221)
Q Consensus 108 ~~gv~~~Ek~VPL~~IqdV~I~QG~ 132 (221)
++|-.++.+=+|.++|.||.|..|.
T Consensus 20 ~~g~~~~~~FIp~~~I~divInE~~ 44 (69)
T PF10181_consen 20 FSGRSSSRRFIPIDKIIDIVINEGF 44 (69)
T ss_pred EcCceeEEEEEEHHHeeEEEEEeeE
Confidence 3454567899999999999999997
No 11
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=36.22 E-value=49 Score=27.72 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 027633 45 VQYQTAQWVLYSLLLILAWGIGLFMLL 71 (221)
Q Consensus 45 vKY~tv~wl~~slllilawgvgilmLL 71 (221)
+|++++.|+.-.++.+++.++|++-++
T Consensus 150 ~K~~~lr~~~g~i~~~~a~~la~~r~~ 176 (177)
T PF07798_consen 150 LKWDTLRWLVGVIFGCVALVLAILRLW 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999998765555667777765443
No 12
>PRK10833 putative assembly protein; Provisional
Probab=35.52 E-value=62 Score=31.80 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--hhhh--hhccccceeEeeccceEeeecCCcccccccceeeeEEE
Q 027633 51 QWVLYSLLLILAWGIGLFMLLYLPVR--RYIL--RKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHV 118 (221)
Q Consensus 51 ~wl~~slllilawgvgilmLL~lPir--ryi~--~~d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~V 118 (221)
.|++.+++++++.++..++++.-|=. ..|- =++-+-|.+.| ..||-+. +||..|+.-.+.++
T Consensus 5 l~~l~~l~~l~v~~~~al~~~id~n~~k~~i~~~v~~~tGr~l~I-~Gdi~ls-----~fP~lgv~l~~v~l 70 (617)
T PRK10833 5 LTTLMILLVVLVAGLSALVLLVNPNDFRAYMVKQVEARSGYQLQL-DGDLRWH-----VWPQLSILSGRMSL 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHheEEEChHHhhHHHHHHHHHHhCCEEEE-cCceEEE-----EccceeEEeccEEE
Confidence 56666666666666665555554332 1121 12225678887 6888886 78888887666666
No 13
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=33.94 E-value=36 Score=25.17 Aligned_cols=42 Identities=10% Similarity=0.226 Sum_probs=29.1
Q ss_pred eeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehh--hhhhhcce
Q 027633 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGY--LQSLFGVY 140 (221)
Q Consensus 88 kl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~--Lqr~FGl~ 140 (221)
++.++++.++=+ ++.. ..++|++.|++|...... -.|.||..
T Consensus 2 ~y~v~~~~l~I~--~~~~---------~~~Ip~~~I~~v~~~~~~~~~~R~~G~~ 45 (100)
T PF10882_consen 2 RYEVDDDGLIIR--WPFG---------KITIPLAEIESVELVDDLPPGIRTFGSG 45 (100)
T ss_pred EEEEECCEEEEE--Eccc---------cEEEEHHHcEEEEeccccCcceEEEEEc
Confidence 456667776664 3222 678999999999988774 46666654
No 14
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=32.46 E-value=62 Score=24.93 Aligned_cols=44 Identities=20% Similarity=0.445 Sum_probs=31.8
Q ss_pred ccccceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehhh
Q 027633 83 DIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYL 133 (221)
Q Consensus 83 d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~L 133 (221)
.|++=.+++|.|-|.|- ...-. -+.-..+||+.|.++....|.+
T Consensus 34 ~~q~G~l~LTsHRliw~-d~~~~------~~~s~~l~L~~i~~~e~~~gf~ 77 (89)
T PF11605_consen 34 NFQNGRLYLTSHRLIWV-DDSDP------SKHSIALPLSLISHIEYSAGFL 77 (89)
T ss_dssp T-SCEEEEEESSEEEEE-ESSGH------CHH-EEEEGGGEEEEEEE-STT
T ss_pred cccCCEEEEEeeEEEEE-cCCCC------ceeEEEEEchHeEEEEEEcccc
Confidence 56677999999999995 22222 2336799999999998888877
No 15
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=31.93 E-value=2.9e+02 Score=22.63 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=48.3
Q ss_pred eeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeeh-hhhhhhcceeEEEEeccCCCCCCCCeEeecCCChh
Q 027633 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQG-YLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPS 166 (221)
Q Consensus 88 kl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG-~Lqr~FGl~slrIETaG~s~~~~~di~i~Gv~~p~ 166 (221)
.+.+|.+.++.-=..|+- |-=+.-..+||.+|+++++|-. -++ ==+.|+|-..|+..+ -+..+.+-.|..
T Consensus 43 ~~vFTnkRlI~vD~QG~T----GkK~~~~siPY~~I~~~siETAG~~D---lD~Elki~i~~~~~~--i~~~f~k~~di~ 113 (124)
T PF08000_consen 43 EIVFTNKRLILVDKQGIT----GKKVEYKSIPYSSITHFSIETAGTFD---LDSELKIWISGQGFP--IEFEFKKKTDIY 113 (124)
T ss_dssp EEEEESSEEEEEEEESSS----SSEEEEEEEEGGGEEEEEEEECSSTT---SEEEEEEEETTESSE--EEEEEGTTSHHH
T ss_pred eEEEecChheEEecccCc----cceEEEEEEehhhccEEEEEeCCccc---CcccEEEEECCCcEE--EEEecCCCCCHH
Confidence 556666666654346665 2223335899999999888752 221 124566665555533 346677878888
Q ss_pred HHHHHHHHH
Q 027633 167 DFRKAVLTR 175 (221)
Q Consensus 167 ~fRk~Il~~ 175 (221)
++-+++...
T Consensus 114 ~i~k~L~~~ 122 (124)
T PF08000_consen 114 EIYKALAEY 122 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777654
No 16
>PF10149 TM231: Transmembrane protein 231; InterPro: IPR019306 The proteins in this entry belong to transmembrane protein family 231; they have no known function.
Probab=31.84 E-value=47 Score=31.17 Aligned_cols=30 Identities=27% Similarity=0.623 Sum_probs=24.0
Q ss_pred CcceeeecccchhhhhhhhhhhHHHHHHHHHH-HHHHH
Q 027633 28 DDDVLYTASFQEKEDNFVQYQTAQWVLYSLLL-ILAWG 64 (221)
Q Consensus 28 ~~~ily~AsF~e~~~~~vKY~tv~wl~~slll-ilawg 64 (221)
++.|+|..+|=|+.+.+ |+.+..+| |+.|.
T Consensus 266 ~~~i~Y~p~~wE~lK~~-------WiQY~s~~~If~~v 296 (320)
T PF10149_consen 266 EEVILYRPGFWEMLKWA-------WIQYLSIFLIFLWV 296 (320)
T ss_pred ceEEEECccHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 57999999999999997 99986665 33343
No 17
>PF15050 SCIMP: SCIMP protein
Probab=31.36 E-value=84 Score=26.66 Aligned_cols=20 Identities=25% Similarity=0.708 Sum_probs=10.6
Q ss_pred HHHHHHHHHHH-HHHHHHHHH
Q 027633 52 WVLYSLLLILA-WGIGLFMLL 71 (221)
Q Consensus 52 wl~~slllila-wgvgilmLL 71 (221)
|+..++..|++ .++|+++++
T Consensus 9 WiiLAVaII~vS~~lglIlyC 29 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYC 29 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 88877774332 334444443
No 18
>PRK00523 hypothetical protein; Provisional
Probab=31.33 E-value=87 Score=24.05 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027633 49 TAQWVLYSLLLILAWGIG 66 (221)
Q Consensus 49 tv~wl~~slllilawgvg 66 (221)
+.+|+++.++.+++-+++
T Consensus 4 ~~l~I~l~i~~li~G~~~ 21 (72)
T PRK00523 4 IGLALGLGIPLLIVGGII 21 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666665554433333
No 19
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=29.16 E-value=86 Score=25.64 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 027633 57 LLLILAWGIGLFMLLYLPVRRY 78 (221)
Q Consensus 57 lllilawgvgilmLL~lPirry 78 (221)
.+++++|.+ -.++|.|+...
T Consensus 31 nFliL~~lL--~k~l~~Pi~~~ 50 (156)
T CHL00118 31 QFLLLMVLL--NIILYKPLLKV 50 (156)
T ss_pred HHHHHHHHH--HHHHHHHHHHH
Confidence 344555554 35678888654
No 20
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.68 E-value=43 Score=26.67 Aligned_cols=6 Identities=50% Similarity=1.697 Sum_probs=2.8
Q ss_pred HHHHHH
Q 027633 52 WVLYSL 57 (221)
Q Consensus 52 wl~~sl 57 (221)
|++..+
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 555433
No 21
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=27.76 E-value=1.3e+02 Score=24.08 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=25.6
Q ss_pred hhhhhhccccceeEeeccceEeeecCCcccccccceeeeEEEeCCC
Q 027633 77 RYILRKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPS 122 (221)
Q Consensus 77 ryi~~~d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~ 122 (221)
.+++.+..++..+.++...- ...+..+++| |.++++..-++..
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~-l~~~~~~~v~--g~V~N~g~~~i~~ 80 (149)
T PF09624_consen 38 YYWLDKYLKKIELTLTSQKR-LQYSESFYVD--GTVTNTGKFTIKK 80 (149)
T ss_pred HHHHhhhcCCceEEEeeeee-eeeccEEEEE--EEEEECCCCEeeE
Confidence 34577888888887766554 4334555544 5556665555543
No 22
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=27.22 E-value=80 Score=29.15 Aligned_cols=18 Identities=39% Similarity=0.693 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027633 56 SLLLILAWGIGLFMLLYL 73 (221)
Q Consensus 56 slllilawgvgilmLL~l 73 (221)
-|.|++|++|=+++|||.
T Consensus 175 ~lALflAFaINFILLFYK 192 (274)
T PF06459_consen 175 FLALFLAFAINFILLFYK 192 (274)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356689999999999995
No 23
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=26.87 E-value=1e+02 Score=26.21 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=38.5
Q ss_pred eecccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhhhccccce
Q 027633 33 YTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRY---ILRKDIRSRK 88 (221)
Q Consensus 33 y~AsF~e~~~~~vKY~tv~wl~~slllilawgvgilmLL~lPirry---i~~~d~~sRk 88 (221)
-+.|++=|.++.-+++..+...++..++.+...|+..++..|+..- ..-.++++||
T Consensus 185 l~~S~~lmkg~k~~~f~l~Lsfigw~~L~~~t~gi~~l~~~pY~~~~~a~fY~~l~~~~ 243 (243)
T PF06161_consen 185 LKRSRKLMKGNKWRLFLLDLSFIGWYILGLLTFGIGLLWVIPYINTAQAEFYEELRKRK 243 (243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3568888999988888877777776666666677777777777532 2355555554
No 24
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=26.41 E-value=84 Score=25.94 Aligned_cols=22 Identities=36% Similarity=0.907 Sum_probs=17.1
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHh
Q 027633 52 WV-LYSLLLILAWGIGLFMLLYL 73 (221)
Q Consensus 52 wl-~~slllilawgvgilmLL~l 73 (221)
|| +..+-||+.|-||+.||.|.
T Consensus 11 ~Ia~mVlGFi~fWPlGla~Lay~ 33 (115)
T PF11014_consen 11 WIAAMVLGFIVFWPLGLALLAYM 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 34555699999999999995
No 25
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=26.13 E-value=91 Score=25.22 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=24.7
Q ss_pred cceeeecccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027633 29 DDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLF 68 (221)
Q Consensus 29 ~~ily~AsF~e~~~~~vKY~tv~wl~~slllilawgvgil 68 (221)
.++-|...==+..|--+.++-+.|.-+.++++++++|++|
T Consensus 50 ktt~W~G~aCqKkDvS~~F~L~~~~ti~lv~~~~~~I~lL 89 (103)
T PF12955_consen 50 KTTHWGGPACQKKDVSVPFWLFAGFTIALVVLVAGAIGLL 89 (103)
T ss_pred ceeeecccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444666777777777777776666666666654
No 26
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=25.92 E-value=93 Score=26.32 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=51.3
Q ss_pred hccccceeEeeccceEeeec-----CCcccccccceeeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCCCCCC
Q 027633 82 KDIRSRKLFLTPNAIVYKVT-----RPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDD 156 (221)
Q Consensus 82 ~d~~sRkl~vt~~~IvYKv~-----rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETaG~s~~~~~d 156 (221)
-..+.|-|.||++.| |.+. .+.. .+..+.+||..|+.|++.-.. +-+|=|| + +...|
T Consensus 63 ~K~~~R~livT~~~i-Y~l~~~~~~~~~~------~~~kr~i~l~~I~~IsvS~~~-D~~~vih---v-------~~~~D 124 (199)
T PF06017_consen 63 NKPQPRILIVTDKAI-YLLDQRKVKDPKK------YKLKRRIPLSDITGISVSPLS-DNFFVIH---V-------PGEGD 124 (199)
T ss_pred CCccceEEEEeCCeE-EEEEEeecCCcee------eEEEeccCcccccEEEEccCC-CCEEEEE---E-------CCCCC
Confidence 344677899988775 7664 5555 688999999999999987522 2334444 3 32566
Q ss_pred eEeecCCChhHHHHHHHHHHhhhh
Q 027633 157 VQIQGVANPSDFRKAVLTRLSNMT 180 (221)
Q Consensus 157 i~i~Gv~~p~~fRk~Il~~~~~~~ 180 (221)
+-+.- .+..+|=..+.....+..
T Consensus 125 ~il~~-~~k~Elv~~L~~~~~~~~ 147 (199)
T PF06017_consen 125 LILES-DFKTELVTILCKAYKKAT 147 (199)
T ss_pred EEEEe-CcHHHHHHHHHHHHHHHh
Confidence 66665 344556556665555443
No 27
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.76 E-value=1.3e+02 Score=23.37 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=33.6
Q ss_pred hccccceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeeh
Q 027633 82 KDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQG 131 (221)
Q Consensus 82 ~d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG 131 (221)
+.++.|=+.||.+.+.|- +.+ - -+.-..|||+.|..|...+.
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~-k~~-~------~~~~g~I~L~~i~~ve~v~~ 60 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWA-KDV-Q------CKKSALIKLAAIKGTEPLSD 60 (98)
T ss_pred cCCceeEEEECCCEEEEE-CCC-C------CceeeeEEccceEEEEEcCC
Confidence 678899999999999994 232 2 37788999999999987654
No 28
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=24.90 E-value=1.4e+02 Score=20.11 Aligned_cols=35 Identities=17% Similarity=0.455 Sum_probs=24.9
Q ss_pred ceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEE
Q 027633 87 RKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIV 127 (221)
Q Consensus 87 Rkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~ 127 (221)
=++|||++-+-|+ .... |-...-..+||..|+.|.
T Consensus 24 G~lyiT~~~l~F~--S~~~----~~~~~~~~ipl~~I~~i~ 58 (61)
T smart00568 24 GRLYISNYRLCFR--SDLP----GKLTPKVVIPLADITRIE 58 (61)
T ss_pred EEEEEECCEEEEE--ccCC----CCeeEEEEEEHHHeeEEE
Confidence 3899999999997 2121 212336889999998875
No 29
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=24.81 E-value=82 Score=27.17 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhh-ccccceeEe
Q 027633 60 ILAWGIGLFMLLYLPVRRYILRK-DIRSRKLFL 91 (221)
Q Consensus 60 ilawgvgilmLL~lPirryi~~~-d~~sRkl~v 91 (221)
++++|+..++.+|+-||.+=+++ .-+.|||-|
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgv 131 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRRRNRKTRKYGV 131 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccceeecc
Confidence 55667777777777666442343 323456554
No 30
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.80 E-value=32 Score=34.07 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=26.6
Q ss_pred hhhhcceeEEEEeccCCCCCCCCeEeecCCChhHHHHHHHHHHhhhhhhh
Q 027633 134 QSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTRLSNMTNEV 183 (221)
Q Consensus 134 qr~FGl~slrIETaG~s~~~~~di~i~Gv~~p~~fRk~Il~~~~~~~~~~ 183 (221)
-.++|+|..+--+ .=|.||+..|++.+..-++-.+-.
T Consensus 66 ~~~~G~y~~~~p~-------------l~v~D~elik~I~ik~F~~F~~r~ 102 (499)
T KOG0158|consen 66 RPVVGIYEGRQPA-------------LLVSDPELIKEILIKDFDNFYNRK 102 (499)
T ss_pred CCEEEEEecCCcc-------------eEecCHHHHHHHHHHhCccCcCCC
Confidence 5778887643221 226799999999999999887533
No 31
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=23.40 E-value=5.4e+02 Score=23.02 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=42.4
Q ss_pred CCcccccccce-eeeEEEeCCCeeeEEEe--ehhhhhhhcceeEEEEeccCCCCCCCCeEeecCCChhHHHHH
Q 027633 102 RPVPFPCFGVL-KKEKHVLLPSVQDIVIE--QGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKA 171 (221)
Q Consensus 102 rgv~~p~~gv~-~~Ek~VPL~~IqdV~I~--QG~Lqr~FGl~slrIETaG~s~~~~~di~i~Gv~~p~~fRk~ 171 (221)
+|+. |-. +.+-+.|++.||.|-++ +|.--| ..+-+++-|++ ||-++++.+|-.+.+.
T Consensus 111 wGFP----GKNRrI~l~~pl~dIqsIrveikeGlnpr----r~iyL~~kg~~-----~IPLTrig~pl~l~ei 170 (188)
T PRK02542 111 WGFP----GKNRRIEVEYPLEDIQAVKVEIREGLNPR----RRLYLRLKGRR-----DIPLTRVGQPLPLAEL 170 (188)
T ss_pred cCCC----CCceEEEEEeEhHHeEEEEEEEecCcCCc----cEEEEEEcCCC-----cCCcccCCCCCCHHHH
Confidence 6654 444 67889999999998776 665444 45788888876 5779999999887653
No 32
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.93 E-value=56 Score=28.08 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=13.9
Q ss_pred ChhHHHHHHHHHHhhhhhhh
Q 027633 164 NPSDFRKAVLTRLSNMTNEV 183 (221)
Q Consensus 164 ~p~~fRk~Il~~~~~~~~~~ 183 (221)
+-..+|++|+..++....+.
T Consensus 125 ~~p~IRD~ii~~Ls~kt~~d 144 (182)
T PRK08455 125 KDPVIRDIIIRILSSKTVEE 144 (182)
T ss_pred hhhHHHHHHHHHHHcCCHHH
Confidence 44568888888887766443
No 33
>COG1531 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.00 E-value=47 Score=25.77 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=24.3
Q ss_pred ccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeeh
Q 027633 93 PNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQG 131 (221)
Q Consensus 93 ~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG 131 (221)
+.+.++.+.+..+ +..+..+||+||.-|.-..|
T Consensus 37 ~~~di~~~~~~~~------~~~~~~IP~HRIveIr~~~g 69 (77)
T COG1531 37 PGDDIEEVGRFYL------LYQGTYIPYHRIVEIRKKDG 69 (77)
T ss_pred ehhhheecceEEE------EecCceeeeEEEEEEEecCC
Confidence 4566777667444 78999999999988774444
No 34
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=21.74 E-value=3.2e+02 Score=20.79 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=26.4
Q ss_pred eeeeEEEeCCCeeeEEEeehhhhhhhcceeE--EEEeccCCCCCCCCeEeecCC
Q 027633 112 LKKEKHVLLPSVQDIVIEQGYLQSLFGVYSL--RIENVGVRRPPSDDVQIQGVA 163 (221)
Q Consensus 112 ~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~sl--rIETaG~s~~~~~di~i~Gv~ 163 (221)
-+.-..+|++.|..|..++- +..+..++ .|..-+.. +.++++.+|.
T Consensus 27 ~kP~~~i~~~dI~~v~feRv---~~~~~ktFDl~v~~k~~~---~~~~~fs~I~ 74 (95)
T PF08512_consen 27 EKPPFVIPLDDIESVEFERV---SSFSSKTFDLVVILKDYE---GPPHEFSSID 74 (95)
T ss_dssp SSS-EEEEGGGEEEEEEE-----ESSSSSEEEEEEEETT-T---S-EEEEEEEE
T ss_pred CCCeEEEEhhHeeEEEEEec---ccCcceEEEEEEEEecCC---CCcEEEeeEC
Confidence 34445899999999999985 33333333 34443322 5677887774
No 35
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=21.65 E-value=2.5e+02 Score=24.69 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=14.6
Q ss_pred cCCccccc-ccceeeeEEEeCCC
Q 027633 101 TRPVPFPC-FGVLKKEKHVLLPS 122 (221)
Q Consensus 101 ~rgv~~p~-~gv~~~Ek~VPL~~ 122 (221)
+.++--|| +|.++....+|-..
T Consensus 165 s~~i~sP~~~G~~~p~I~lP~~~ 187 (299)
T PF05569_consen 165 SSGISSPFVFGFLRPVIVLPESL 187 (299)
T ss_pred cCCCCCCeeecCcceEEEecCcc
Confidence 45555555 68888877777653
No 36
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=21.51 E-value=1.6e+02 Score=23.96 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 027633 47 YQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYI 79 (221)
Q Consensus 47 Y~tv~wl~~slllilawgvgilmLL~lPirryi 79 (221)
..++.|.++. ++|++|+ +..++|.|+..++
T Consensus 5 ~~~~~~~~in-F~il~~i--L~~f~~kpi~~~l 34 (159)
T PRK13461 5 IPTIIATIIN-FIILLLI--LKHFFFDKIKAVI 34 (159)
T ss_pred HHHHHHHHHH-HHHHHHH--HHHHhHHHHHHHH
Confidence 3455665442 2233333 4466788987553
No 37
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.86 E-value=1.6e+02 Score=24.07 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 027633 47 YQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYI 79 (221)
Q Consensus 47 Y~tv~wl~~slllilawgvgilmLL~lPirryi 79 (221)
|.++.|.++.+ +|++|. +-.++|.|+.+.+
T Consensus 8 ~~~~~~~~i~F-lil~~l--l~~~l~~pi~~~l 37 (164)
T PRK14471 8 FGLFFWQTILF-LILLLL--LAKFAWKPILGAV 37 (164)
T ss_pred HHHHHHHHHHH-HHHHHH--HHHHhHHHHHHHH
Confidence 45556655532 344444 3456788997653
No 38
>PF11289 DUF3092: Protein of unknown function (DUF3092); InterPro: IPR024407 This family of SARS coronavirus proteins includes Orf3/3a, which form homotetrameric potassium sensitive ion channels (viroporin) and may modulate virus release. They have also been shown to up-regulate expression of fibrinogen subunits FGA, FGB and FGG in host lung epithelial cells [, , ].
Probab=20.39 E-value=3.3e+02 Score=25.34 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=20.8
Q ss_pred CcccccccceeeeEEEeCCCeeeEEEe
Q 027633 103 PVPFPCFGVLKKEKHVLLPSVQDIVIE 129 (221)
Q Consensus 103 gv~~p~~gv~~~Ek~VPL~~IqdV~I~ 129 (221)
.-+|=||-...-.-++|+|.|+|+..+
T Consensus 143 ~NyFVCwht~nYdYCiPYnsitntiv~ 169 (273)
T PF11289_consen 143 ANYFVCWHTHNYDYCIPYNSITNTIVL 169 (273)
T ss_pred CceEEEEEeCCcceEeecCCCCCeEEE
Confidence 334567777777789999999998764
Done!