Query 027633
Match_columns 221
No_of_seqs 56 out of 58
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 21:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hsa_A Pleckstrin homology dom 78.3 17 0.00058 29.0 9.3 79 88-176 44-124 (126)
2 2hth_B Vacuolar protein sortin 63.7 38 0.0013 26.7 8.3 89 82-179 35-131 (140)
3 2cay_A VPS36 PH domain, vacuol 50.6 42 0.0014 26.7 6.5 89 83-182 49-138 (145)
4 3ha4_A MIX1; TPR-like, helix-t 32.4 24 0.00082 28.8 2.4 19 162-180 91-109 (154)
5 3hsa_A Pleckstrin homology dom 23.0 71 0.0024 25.3 3.5 53 97-159 37-94 (126)
6 2kl8_A OR15; structural genomi 18.5 81 0.0028 23.4 2.8 28 154-183 41-68 (85)
7 2jo1_A Phospholemman; FXYD1, N 14.4 2.1E+02 0.0073 21.0 4.1 36 38-75 4-40 (72)
8 3j1r_A Archaeal adhesion filam 14.3 2.2E+02 0.0076 17.3 3.5 16 58-73 10-25 (26)
9 1wz4_A Major surface antigen; 12.8 55 0.0019 19.7 0.5 10 102-111 15-24 (26)
10 1q90_G Cytochrome B6F complex 12.7 2.4E+02 0.0081 18.4 3.5 25 53-77 7-31 (37)
No 1
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=78.29 E-value=17 Score=28.95 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=56.8
Q ss_pred eeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEe-ehhhhhhhcc-eeEEEEeccCCCCCCCCeEeecCCCh
Q 027633 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIE-QGYLQSLFGV-YSLRIENVGVRRPPSDDVQIQGVANP 165 (221)
Q Consensus 88 kl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~-QG~Lqr~FGl-~slrIETaG~s~~~~~di~i~Gv~~p 165 (221)
.+.+|.+.++..=..|+. |-=+.-..+||.+|+++++| .|- |.+ +.|+|-..|+..| -++++.+-.|.
T Consensus 44 ~~iFTnkRLI~vD~QG~T----GkK~~~~siPY~sI~~~siETAG~----fDlDaElki~isg~~~p--i~~~f~k~~di 113 (126)
T 3hsa_A 44 LFVFTSXRLILIDXQGVT----GXXVSYHSIPYXAIVHFQVETAGT----FDMDAELXLWISGQHEP--LVXELXRGTDV 113 (126)
T ss_dssp EEEEESSEEEEEEEESTT----SCEEEEEEEEGGGEEEEEEEEEST----TSCEEEEEEEETTCSSC--EEEEECTTSCH
T ss_pred eEEEccchheEEecCcCc----ccceEEEEeccceeeEEEEecccc----ccCCceEEEEEcCCceE--EEEeccCcccH
Confidence 455666665554345555 32234468999999999999 564 554 3588887777644 68899999999
Q ss_pred hHHHHHHHHHH
Q 027633 166 SDFRKAVLTRL 176 (221)
Q Consensus 166 ~~fRk~Il~~~ 176 (221)
.++-+++...+
T Consensus 114 ~~i~k~La~~v 124 (126)
T 3hsa_A 114 VGIQXTIARYA 124 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987665
No 2
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=63.72 E-value=38 Score=26.67 Aligned_cols=89 Identities=7% Similarity=0.126 Sum_probs=53.4
Q ss_pred hccccceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCC-------CC
Q 027633 82 KDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRP-------PS 154 (221)
Q Consensus 82 ~d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETaG~s~~-------~~ 154 (221)
..+++-.+|||.|-|+|- ...-- ..--.+||..|.++.++|+.+-+-=.+ .+.+..++..++ ..
T Consensus 35 ~~~k~G~l~LTshRli~~-d~~~~-------~~s~~lpl~~v~~~e~~~~~f~~s~Ki-~l~l~~~~~~~~~gp~~~s~~ 105 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWR-DQKNH-------ECCMAILLSQIVFIEEQAAGIGKSAKI-VVHLHPAPPNKEPGPFQSSKN 105 (140)
T ss_dssp SCCCCEEEEEESSEEEEE-ETTCC-------SCCEEEEGGGEEEEEEECCTTSSCCEE-EEEECCCCCCSSSCCCSTTSC
T ss_pred CCCcCCEEEEecCEEEEe-cCCCC-------ceEEEEEhHHeeeeeeeccccccCceE-EEEecCCCccCCCCCcccccC
Confidence 456777999999999993 33321 244589999999999999974221111 244444332222 12
Q ss_pred CCeEeecC-CChhHHHHHHHHHHhhh
Q 027633 155 DDVQIQGV-ANPSDFRKAVLTRLSNM 179 (221)
Q Consensus 155 ~di~i~Gv-~~p~~fRk~Il~~~~~~ 179 (221)
+.+++..- -.+++|-.+..+.+...
T Consensus 106 ~~~kLsFr~Gg~~eF~~~L~~al~~k 131 (140)
T 2hth_B 106 SYIKLSFKEHGQIEFYRRLSEEMTQR 131 (140)
T ss_dssp CEEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred cEEEEEEcCCCChHHHHHHHHHHHHh
Confidence 44555432 34567777766555443
No 3
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=50.63 E-value=42 Score=26.74 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=56.7
Q ss_pred ccccceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCCCCCCeEeecC
Q 027633 83 DIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGV 162 (221)
Q Consensus 83 d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETaG~s~~~~~di~i~Gv 162 (221)
.+++-.+|||.+-|+|- ...- |. .+--.+||..|+|+.++|+.+-+- ..+++.-... ..+.+.+++.--
T Consensus 49 ~~k~G~lyLTshRIIyv-~~~~--~~----~~SfslPL~~v~~~e~~~~~fg~s---~Ki~l~~~p~-~~~~~~~KLsFk 117 (145)
T 2cay_A 49 QRQRGRIFLTSQRIIYI-DDAK--PT----QNSLGLELDDLAYVNYSSGFLTRS---PRLILFFKDP-SSSTEFVQLSFR 117 (145)
T ss_dssp TCSSEEEEEESSEEEEE-ESSC--HH----HHCEEEEGGGEEEEEEECSSSSSS---CEEEEEESSC-SSTTCCEEEEES
T ss_pred CCCccEEEEEcCeEEEe-cCCC--Cc----ceEEEeEhHheeeeeEEcCccccC---ceEEEEecCC-CCCceEEEEEEc
Confidence 45666999999999994 3221 11 244589999999999999986441 2222222111 223577777543
Q ss_pred -CChhHHHHHHHHHHhhhhhh
Q 027633 163 -ANPSDFRKAVLTRLSNMTNE 182 (221)
Q Consensus 163 -~~p~~fRk~Il~~~~~~~~~ 182 (221)
--+.+|-.+.++.+.+...|
T Consensus 118 ~GGa~eF~~~l~~al~~~~~~ 138 (145)
T 2cay_A 118 KSDGVLFSQATERALENILTE 138 (145)
T ss_dssp SSCCHHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHHHHHh
Confidence 23478888887777766543
No 4
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=32.43 E-value=24 Score=28.84 Aligned_cols=19 Identities=47% Similarity=0.772 Sum_probs=17.9
Q ss_pred CCChhHHHHHHHHHHhhhh
Q 027633 162 VANPSDFRKAVLTRLSNMT 180 (221)
Q Consensus 162 v~~p~~fRk~Il~~~~~~~ 180 (221)
++||+.+||.|++|+.|+.
T Consensus 91 vadpd~~rkevlmqllnvk 109 (154)
T 3ha4_A 91 VADPDEMRKEVLMQLLNVK 109 (154)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhh
Confidence 7899999999999999987
No 5
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=22.98 E-value=71 Score=25.35 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=34.1
Q ss_pred EeeecCCcccccccceeeeEEEeCCCee-----eEEEeehhhhhhhcceeEEEEeccCCCCCCCCeEe
Q 027633 97 VYKVTRPVPFPCFGVLKKEKHVLLPSVQ-----DIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQI 159 (221)
Q Consensus 97 vYKv~rgv~~p~~gv~~~Ek~VPL~~Iq-----dV~I~QG~Lqr~FGl~slrIETaG~s~~~~~di~i 159 (221)
.||..|..+ .-+.+.+-+-..| .+.+.-=|..+ |..+.+||||.... .+|++|
T Consensus 37 ayk~iRD~~------iFTnkRLI~vD~QG~TGkK~~~~siPY~s---I~~~siETAG~fDl-DaElki 94 (126)
T 3hsa_A 37 AYXMVRDLF------VFTSXRLILIDXQGVTGXXVSYHSIPYXA---IVHFQVETAGTFDM-DAELXL 94 (126)
T ss_dssp EEECSSEEE------EEESSEEEEEEEESTTSCEEEEEEEEGGG---EEEEEEEEESTTSC-EEEEEE
T ss_pred EehhcCceE------EEccchheEEecCcCcccceEEEEeccce---eeEEEEeccccccC-CceEEE
Confidence 467677777 3344444444444 45555556665 89999999999854 467777
No 6
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=18.49 E-value=81 Score=23.39 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=23.2
Q ss_pred CCCeEeecCCChhHHHHHHHHHHhhhhhhh
Q 027633 154 SDDVQIQGVANPSDFRKAVLTRLSNMTNEV 183 (221)
Q Consensus 154 ~~di~i~Gv~~p~~fRk~Il~~~~~~~~~~ 183 (221)
.-+|.|+|+ |+..||..-.++.+++.+-
T Consensus 41 dleiritgv--peqvrkelakeaerlakef 68 (85)
T 2kl8_A 41 DLEIRITGV--PEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp CEEEEEESC--CHHHHHHHHHHHHHHHHHT
T ss_pred eeEEEEecC--hHHHHHHHHHHHHHHHHhc
Confidence 457888998 7899999999999987553
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=14.41 E-value=2.1e+02 Score=21.01 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=24.1
Q ss_pred chhhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhh
Q 027633 38 QEKEDNFVQYQTAQWVLYSLLL-ILAWGIGLFMLLYLPV 75 (221)
Q Consensus 38 ~e~~~~~vKY~tv~wl~~slll-ilawgvgilmLL~lPi 75 (221)
+|..+-|-.|.++.-- +|.+ .+++++||+++|.-..
T Consensus 4 kE~dPF~YDY~tLRiG--GLifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 4 KEHDPFTYDYQSLQIG--GLVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHSGGGCSTHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccchHHhhcc--chHHHHHHHHHHHHHHHcCcc
Confidence 4555556677777654 3344 7788899999988533
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=14.29 E-value=2.2e+02 Score=17.27 Aligned_cols=16 Identities=13% Similarity=0.492 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 027633 58 LLILAWGIGLFMLLYL 73 (221)
Q Consensus 58 llilawgvgilmLL~l 73 (221)
|.+++.+-++++++|+
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3356666666777763
No 9
>1wz4_A Major surface antigen; helix turn helix, gene regulation; NMR {Synthetic}
Probab=12.82 E-value=55 Score=19.71 Aligned_cols=10 Identities=40% Similarity=0.618 Sum_probs=7.9
Q ss_pred CCcccccccc
Q 027633 102 RPVPFPCFGV 111 (221)
Q Consensus 102 rgv~~p~~gv 111 (221)
||.+||++|-
T Consensus 15 rgly~pAGGS 24 (26)
T 1wz4_A 15 RGLYFPAGGX 24 (26)
T ss_dssp GGGSCCSCC-
T ss_pred cccccCCccc
Confidence 7888999884
No 10
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=12.68 E-value=2.4e+02 Score=18.41 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 027633 53 VLYSLLLILAWGIGLFMLLYLPVRR 77 (221)
Q Consensus 53 l~~slllilawgvgilmLL~lPirr 77 (221)
.-+.+-+|.+...|++.--|+.+||
T Consensus 7 ~GIVlGlipvtlaGLfv~Ay~QyrR 31 (37)
T 1q90_G 7 CGIVLGLVPVTIAGLFVTAYLQYLR 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHhh
Confidence 3344555888888888888876654
Done!