Query 027633
Match_columns 221
No_of_seqs 56 out of 58
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 21:55:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027633.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027633hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2caya1 b.55.1.12 (A:1-99,A:25 62.0 2.5 0.00018 31.6 3.0 86 83-179 41-127 (130)
2 d2hthb1 b.55.1.12 (B:3-131) Va 35.3 15 0.0011 26.6 3.6 44 82-133 31-74 (129)
3 d3dcxa1 b.55.1.13 (A:9-124) Un 28.8 98 0.0071 22.4 9.1 79 88-176 35-115 (116)
4 d2gcla1 b.55.1.10 (A:237-474) 25.7 23 0.0017 28.0 3.3 57 88-163 158-218 (238)
5 d1r31a1 d.58.20.1 (A:111-220) 24.1 19 0.0014 26.2 2.2 26 155-180 4-29 (110)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 12.9 62 0.0045 21.2 2.7 17 59-75 7-23 (158)
7 d1zsqa1 b.55.1.8 (A:74-198) My 12.8 1.6E+02 0.012 20.4 5.2 37 88-131 31-67 (125)
8 d2coaa1 b.55.1.1 (A:8-119) Pro 12.7 1.4E+02 0.01 19.3 4.5 60 82-148 15-76 (112)
9 d1maia_ b.55.1.1 (A:) Phosphol 12.7 51 0.0037 22.0 2.1 37 87-129 29-67 (119)
10 d1xo8a_ b.1.25.1 (A:) Putative 10.9 63 0.0046 23.6 2.3 33 94-126 112-150 (151)
No 1
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=62.02 E-value=2.5 Score=31.60 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=54.0
Q ss_pred ccccceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCCCCCCeEeecC
Q 027633 83 DIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGV 162 (221)
Q Consensus 83 d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETaG~s~~~~~di~i~Gv 162 (221)
.+++-.+|+|.|-|+|- ..+-- -.+--.+||..|+++.+.|+.+-|- ..+++.-...+.. ..-+++.--
T Consensus 41 ~~~~G~l~LTshRiI~v-~~~~~------~~~S~slpL~~i~~~e~~~~~~~ss---~KI~l~l~~~~~~-~~~vklsFr 109 (130)
T d2caya1 41 QRQRGRIFLTSQRIIYI-DDAKP------TQNSLGLELDDLAYVNYSSGFLTRS---PRLILFFKDPSSS-TEFVQLSFR 109 (130)
T ss_dssp TCSSEEEEEESSEEEEE-ESSCH------HHHCEEEEGGGEEEEEEECSSSSSS---CEEEEEESSCSST-TCCEEEEES
T ss_pred cccCceEEEEeeEEEEe-cCCCC------ceeEEEeEhhheeEeEEEccccCCC---CeEEEEeCCCCCC-CCEEEEEEc
Confidence 35677999999999995 33322 2345789999999999999976542 3455544433322 233444322
Q ss_pred -CChhHHHHHHHHHHhhh
Q 027633 163 -ANPSDFRKAVLTRLSNM 179 (221)
Q Consensus 163 -~~p~~fRk~Il~~~~~~ 179 (221)
-...+|.+++...+.++
T Consensus 110 ~gg~~~F~~~~~~~~~~~ 127 (130)
T d2caya1 110 KSDGVLFSQATERALENI 127 (130)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHH
Confidence 24556776666665544
No 2
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.27 E-value=15 Score=26.56 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=32.8
Q ss_pred hccccceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehhh
Q 027633 82 KDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYL 133 (221)
Q Consensus 82 ~d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~L 133 (221)
..+++=.+++|.|-++|- ...- -..--.+||+.|.++.++|+.+
T Consensus 31 ~~~~~G~l~LTthRli~~-~~~~-------~~~s~~lpl~~i~~~e~~~~~f 74 (129)
T d2hthb1 31 IKFDAGTLLLSTHRLIWR-DQKN-------HECCMAILLSQIVFIEEQAAGI 74 (129)
T ss_dssp SCCCCEEEEEESSEEEEE-ETTC-------CSCCEEEEGGGEEEEEEECCTT
T ss_pred ccccceEEEEEeceEEEe-cCCC-------CceEEEEEhHHceeeeEEcccc
Confidence 355666999999999994 2211 1234579999999999999864
No 3
>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}
Probab=28.81 E-value=98 Score=22.35 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=51.7
Q ss_pred eeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEe-ehhhhhhhcc-eeEEEEeccCCCCCCCCeEeecCCCh
Q 027633 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIE-QGYLQSLFGV-YSLRIENVGVRRPPSDDVQIQGVANP 165 (221)
Q Consensus 88 kl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~-QG~Lqr~FGl-~slrIETaG~s~~~~~di~i~Gv~~p 165 (221)
.+.+|.+-++..=..|+. |-=+.-..+||.+|+++++| -|-+ .+ +.++|...|...+ -+..+.+-.|.
T Consensus 35 ~~~FTnkRlI~vD~qg~t----GkK~~~~siPY~~I~~~siEtAGtf----D~DsElki~~~~~~~~--i~~ef~~~~di 104 (116)
T d3dcxa1 35 MFVFTNKRLILIDKQGVT----GKKVSYHSVPYKAITHFEVETAGTF----DMDAELKLWISGQKDP--LVKELKKGTDV 104 (116)
T ss_dssp EEEEESSEEEEEEEESSS----CCEEEEEEEEGGGEEEEEEECCSST----TSCEEEEEEETTCSSC--EEEEECBTSCH
T ss_pred eEEEecceEEEEeccccc----cceEEEEEEehhHeEEEEEEeCccc----cCcccEEEEEecCceE--EEEEeCCccCH
Confidence 445555555543235655 22233346999999999999 4443 33 4578877665532 35688999999
Q ss_pred hHHHHHHHHHH
Q 027633 166 SDFRKAVLTRL 176 (221)
Q Consensus 166 ~~fRk~Il~~~ 176 (221)
.++-++|...+
T Consensus 105 ~~i~~~La~~v 115 (116)
T d3dcxa1 105 VGIQKTIANFS 115 (116)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999887653
No 4
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.68 E-value=23 Score=28.04 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=35.4
Q ss_pred eeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEee----hhhhhhhcceeEEEEeccCCCCCCCCeEeecCC
Q 027633 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQ----GYLQSLFGVYSLRIENVGVRRPPSDDVQIQGVA 163 (221)
Q Consensus 88 kl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~Q----G~Lqr~FGl~slrIETaG~s~~~~~di~i~Gv~ 163 (221)
-|+.+++.++| +.+|.+ .+|++.|..|..+. +-.+|-|.+ .|..-++. ...++.+|.
T Consensus 158 ~L~pl~~~llf-~~KP~~-----------~i~~~eI~~V~f~Rv~~~~~~~rtFD~---~v~~k~~~----~~~~fs~I~ 218 (238)
T d2gcla1 158 YLYPLDNAFFF-LTKPTL-----------YIPFSDVSMVNISRAGQTSTSSRTFDL---EVVLRSNR----GSTTFANIS 218 (238)
T ss_dssp EEEECSSEEEE-ESSSCE-----------EEEGGGEEEEEEEC--------CEEEE---EEEESTTC----CEEEEEEEE
T ss_pred EEEEccCeEEE-ecCCcE-----------EEEehhEeEEEEEeecCCccccceeeE---EEEEeCCC----ccEEEeccC
Confidence 56677777777 566655 68999999999985 245677764 44444422 346666654
No 5
>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Probab=24.06 E-value=19 Score=26.15 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.7
Q ss_pred CCeEeecCCChhHHHHHHHHHHhhhh
Q 027633 155 DDVQIQGVANPSDFRKAVLTRLSNMT 180 (221)
Q Consensus 155 ~di~i~Gv~~p~~fRk~Il~~~~~~~ 180 (221)
+.||+.++.||+.+|+.|+.+++++.
T Consensus 4 GQIql~~v~d~~~a~~~i~~~k~~l~ 29 (110)
T d1r31a1 4 AQVQIVGIQDPLNARLSLLRRKDEII 29 (110)
T ss_dssp EEEEEESCSCHHHHHHHHHHTHHHHH
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999887
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=12.88 E-value=62 Score=21.19 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 027633 59 LILAWGIGLFMLLYLPV 75 (221)
Q Consensus 59 lilawgvgilmLL~lPi 75 (221)
+|.+.+||||+-+.+|-
T Consensus 7 lVViaIIgILaaia~P~ 23 (158)
T d2pila_ 7 MIVIAIVGILAAVALPA 23 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777777777775
No 7
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.78 E-value=1.6e+02 Score=20.44 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=25.9
Q ss_pred eeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeeh
Q 027633 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQG 131 (221)
Q Consensus 88 kl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG 131 (221)
.|++|.+-++++-. .-- -..+..|||..|..|.-..|
T Consensus 31 ~L~lTnyrliF~~~-~~~------~~~~~~ipl~~I~~v~k~~~ 67 (125)
T d1zsqa1 31 TLTVTNYRLYFKSM-ERD------PPFVLDASLGVINRVEKIGG 67 (125)
T ss_dssp EEEEESSEEEEEES-SSS------SCEEEEEEGGGEEEEEEECC
T ss_pred EEEEEeeEEEEEcC-CCC------ccEEEEeccceeeeeeeccc
Confidence 68999999999732 111 12356899999999876544
No 8
>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.74 E-value=1.4e+02 Score=19.32 Aligned_cols=60 Identities=10% Similarity=-0.004 Sum_probs=41.7
Q ss_pred hccccceeEeeccceEeeecCCcccccccceeeeEEEeCCCeeeEEEeehhhhh--hhcceeEEEEecc
Q 027633 82 KDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQS--LFGVYSLRIENVG 148 (221)
Q Consensus 82 ~d~~sRkl~vt~~~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr--~FGl~slrIETaG 148 (221)
+..+.|=+.|+.+.+.|=.+..-- +.-..|||..+..|...+..... -=+-|.+.|.|..
T Consensus 15 ~~wkkRwFvL~~~~L~YYk~~~~~-------~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~ 76 (112)
T d2coaa1 15 TLRKRHYWRLDCKCITLFQNNTTN-------RYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN 76 (112)
T ss_dssp CCCEEEEEEECSSEEEEESSSSCS-------SCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS
T ss_pred CCeeEEEEEEEcceEEEEeccCCC-------ccceEEeeeccccccccccccccccCCCccEEEEEeCC
Confidence 346777889999999886443333 55588999999998876553321 2245789998876
No 9
>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.66 E-value=51 Score=21.98 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=25.1
Q ss_pred ceeEeecc--ceEeeecCCcccccccceeeeEEEeCCCeeeEEEe
Q 027633 87 RKLFLTPN--AIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIE 129 (221)
Q Consensus 87 Rkl~vt~~--~IvYKv~rgv~~p~~gv~~~Ek~VPL~~IqdV~I~ 129 (221)
|-++|+++ .|.|+-.++.. .+..+++|++.|.+|..-
T Consensus 29 R~f~L~~d~~~i~~~~~~~~~------~~~~~~i~i~~I~~V~~G 67 (119)
T d1maia_ 29 RFYKLQEDCKTIWQESRKVMR------SPESQLFSIEDIQEVRMG 67 (119)
T ss_dssp EEEEECTTSSEEEECCCCTTC------CTTTTEEEGGGEEEEEES
T ss_pred EEEEEcCCCCEEEEeCCCCCC------CccceEEEHHHceEEEcC
Confidence 55778765 46665334444 455679999999998663
No 10
>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.92 E-value=63 Score=23.63 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=22.7
Q ss_pred cceEeeecCCccc--ccccc----eeeeEEEeCCCeeeE
Q 027633 94 NAIVYKVTRPVPF--PCFGV----LKKEKHVLLPSVQDI 126 (221)
Q Consensus 94 ~~IvYKv~rgv~~--p~~gv----~~~Ek~VPL~~IqdV 126 (221)
.+|.|+++-++-+ |.+|- +.++.++||+...|+
T Consensus 112 ~~i~Y~l~g~l~~d~pv~G~~tiP~~~~Gei~lP~l~d~ 150 (151)
T d1xo8a_ 112 WDIDYELQIGLTIDLPVVGEFTIPISSKGEIKLPTFKDF 150 (151)
T ss_dssp SEEEEEEEEEEEECCTTTSSEEEEEEEEEEEECCSCSSC
T ss_pred CCccEEEEEEEEEecCccCceEeeeccCCEEECCccccc
Confidence 4566776554443 66784 458999999988774
Done!