Query 027634
Match_columns 221
No_of_seqs 131 out of 1279
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02473 glutathione S-transfe 100.0 1.4E-41 3E-46 254.1 22.5 211 4-215 2-212 (214)
2 PLN02395 glutathione S-transfe 100.0 1.9E-39 4.1E-44 242.8 22.7 212 4-217 2-213 (215)
3 PRK09481 sspA stringent starva 100.0 1.4E-39 2.9E-44 242.6 19.9 195 5-217 11-205 (211)
4 PRK13972 GSH-dependent disulfi 100.0 2.2E-38 4.8E-43 236.9 18.5 199 5-216 2-207 (215)
5 PRK15113 glutathione S-transfe 100.0 5.4E-38 1.2E-42 234.5 18.8 204 4-217 5-211 (214)
6 KOG0868 Glutathione S-transfer 100.0 3.5E-38 7.6E-43 216.0 16.0 209 1-220 2-213 (217)
7 TIGR01262 maiA maleylacetoacet 100.0 4.4E-37 9.6E-42 229.2 20.2 204 6-217 1-207 (210)
8 PRK10542 glutathionine S-trans 100.0 6.1E-37 1.3E-41 227.0 18.6 196 5-216 1-199 (201)
9 KOG0406 Glutathione S-transfer 100.0 9E-37 2E-41 222.1 18.6 198 3-215 8-212 (231)
10 PRK11752 putative S-transferas 100.0 3.4E-36 7.3E-41 230.7 21.0 204 4-217 44-261 (264)
11 COG0625 Gst Glutathione S-tran 100.0 6.3E-36 1.4E-40 223.0 20.7 194 5-209 1-199 (211)
12 KOG0867 Glutathione S-transfer 100.0 1.2E-35 2.6E-40 222.3 18.3 208 4-216 2-211 (226)
13 PRK10357 putative glutathione 100.0 2.4E-35 5.2E-40 218.6 18.7 198 5-213 1-199 (202)
14 PTZ00057 glutathione s-transfe 100.0 5.7E-34 1.2E-38 211.3 18.5 193 1-218 1-203 (205)
15 TIGR00862 O-ClC intracellular 100.0 2.3E-32 5.1E-37 204.0 18.4 185 10-216 16-222 (236)
16 KOG1695 Glutathione S-transfer 100.0 1.5E-32 3.3E-37 198.9 16.0 200 2-218 1-204 (206)
17 PLN02378 glutathione S-transfe 100.0 3.7E-32 8E-37 202.7 14.4 181 9-216 16-201 (213)
18 PLN02817 glutathione dehydroge 100.0 2.2E-31 4.8E-36 203.0 16.1 178 10-214 70-251 (265)
19 PRK10387 glutaredoxin 2; Provi 100.0 1.8E-31 3.9E-36 199.0 14.6 189 5-208 1-207 (210)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 3E-29 6.5E-34 186.4 12.7 187 6-208 1-206 (209)
21 KOG4420 Uncharacterized conser 100.0 1E-28 2.3E-33 179.1 13.6 209 4-214 26-287 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 4E-24 8.7E-29 181.6 18.0 156 5-207 3-159 (722)
23 KOG1422 Intracellular Cl- chan 99.9 3.2E-21 6.9E-26 136.5 15.1 182 10-216 18-207 (221)
24 cd03052 GST_N_GDAP1 GST_N fami 99.9 1.3E-21 2.8E-26 120.7 8.5 73 5-77 1-73 (73)
25 cd03045 GST_N_Delta_Epsilon GS 99.8 7.5E-21 1.6E-25 118.1 8.5 74 5-78 1-74 (74)
26 cd03050 GST_N_Theta GST_N fami 99.8 2.2E-20 4.7E-25 116.5 9.2 76 5-80 1-76 (76)
27 cd03053 GST_N_Phi GST_N family 99.8 2.5E-20 5.3E-25 116.4 8.8 75 5-79 2-76 (76)
28 PF13417 GST_N_3: Glutathione 99.8 1.9E-20 4.1E-25 116.4 7.8 74 7-83 1-74 (75)
29 cd03048 GST_N_Ure2p_like GST_N 99.8 7.2E-20 1.6E-24 115.6 9.4 76 5-81 2-80 (81)
30 cd03056 GST_N_4 GST_N family, 99.8 6.3E-20 1.4E-24 113.6 8.3 73 5-77 1-73 (73)
31 cd03059 GST_N_SspA GST_N famil 99.8 1.1E-19 2.3E-24 112.6 8.8 73 5-80 1-73 (73)
32 cd03047 GST_N_2 GST_N family, 99.8 1.2E-19 2.5E-24 112.3 8.3 73 5-77 1-73 (73)
33 cd03061 GST_N_CLIC GST_N famil 99.8 1.4E-19 3.1E-24 114.6 8.2 70 11-83 20-89 (91)
34 cd03057 GST_N_Beta GST_N famil 99.8 2.6E-19 5.7E-24 111.9 9.0 76 5-81 1-77 (77)
35 PF02798 GST_N: Glutathione S- 99.8 1.5E-19 3.2E-24 112.5 7.6 73 6-78 2-76 (76)
36 cd03044 GST_N_EF1Bgamma GST_N 99.8 2.4E-19 5.3E-24 111.4 8.5 72 6-78 2-74 (75)
37 cd03058 GST_N_Tau GST_N family 99.8 2.7E-19 5.8E-24 111.0 8.6 73 5-80 1-74 (74)
38 cd03041 GST_N_2GST_N GST_N fam 99.8 1.7E-19 3.8E-24 112.6 7.7 74 5-80 2-77 (77)
39 cd03042 GST_N_Zeta GST_N famil 99.8 2.7E-19 5.9E-24 110.8 8.4 73 5-77 1-73 (73)
40 cd03051 GST_N_GTT2_like GST_N 99.8 2.4E-19 5.3E-24 111.3 8.1 73 5-77 1-74 (74)
41 cd03046 GST_N_GTT1_like GST_N 99.8 4E-19 8.6E-24 110.9 9.0 76 5-81 1-76 (76)
42 cd03076 GST_N_Pi GST_N family, 99.8 1.3E-19 2.9E-24 111.9 6.6 73 4-79 1-73 (73)
43 cd03039 GST_N_Sigma_like GST_N 99.8 4.1E-19 9E-24 109.5 6.5 72 5-78 1-72 (72)
44 cd03060 GST_N_Omega_like GST_N 99.8 1.2E-18 2.6E-23 107.1 8.1 68 6-76 2-70 (71)
45 cd03075 GST_N_Mu GST_N family, 99.8 2.7E-18 5.8E-23 108.3 7.9 75 6-80 2-82 (82)
46 cd03037 GST_N_GRX2 GST_N famil 99.8 2.6E-18 5.7E-23 105.6 7.0 70 5-78 1-71 (71)
47 KOG4244 Failed axon connection 99.8 2.8E-17 6E-22 120.7 12.8 179 11-205 59-273 (281)
48 cd03049 GST_N_3 GST_N family, 99.8 5.5E-18 1.2E-22 104.8 7.8 70 5-77 1-73 (73)
49 COG2999 GrxB Glutaredoxin 2 [P 99.8 5E-17 1.1E-21 112.1 13.1 189 5-208 1-207 (215)
50 cd03077 GST_N_Alpha GST_N fami 99.8 6.9E-18 1.5E-22 105.7 8.1 72 4-81 1-77 (79)
51 cd03038 GST_N_etherase_LigE GS 99.7 5.6E-18 1.2E-22 107.6 7.8 70 11-81 14-84 (84)
52 cd03055 GST_N_Omega GST_N fami 99.7 8E-18 1.7E-22 107.9 8.4 71 4-77 18-89 (89)
53 PF13409 GST_N_2: Glutathione 99.7 1.1E-17 2.5E-22 102.2 7.5 68 12-79 1-70 (70)
54 cd03187 GST_C_Phi GST_C family 99.7 3.8E-17 8.3E-22 110.6 10.7 117 95-212 2-118 (118)
55 cd03080 GST_N_Metaxin_like GST 99.7 2.8E-17 6.2E-22 102.0 8.1 67 5-81 2-75 (75)
56 cd03040 GST_N_mPGES2 GST_N fam 99.7 3.4E-17 7.3E-22 102.3 8.1 73 4-81 1-77 (77)
57 cd03043 GST_N_1 GST_N family, 99.7 4.6E-17 9.9E-22 100.4 7.9 68 9-77 6-73 (73)
58 cd03178 GST_C_Ure2p_like GST_C 99.7 1.5E-16 3.2E-21 106.9 10.3 112 95-212 1-112 (113)
59 KOG3029 Glutathione S-transfer 99.7 2.2E-16 4.7E-21 116.7 11.4 195 4-204 90-354 (370)
60 cd03188 GST_C_Beta GST_C famil 99.7 6E-17 1.3E-21 109.0 7.9 113 95-212 2-114 (114)
61 cd03196 GST_C_5 GST_C family, 99.7 6.4E-17 1.4E-21 108.8 8.0 112 92-211 3-114 (115)
62 COG0435 ECM4 Predicted glutath 99.7 2.8E-16 6.2E-21 115.9 9.4 197 4-213 51-285 (324)
63 cd03180 GST_C_2 GST_C family, 99.7 1E-15 2.3E-20 102.2 10.6 109 95-208 2-110 (110)
64 cd03191 GST_C_Zeta GST_C famil 99.7 9E-16 2E-20 104.4 10.4 117 94-215 2-120 (121)
65 cd03186 GST_C_SspA GST_N famil 99.7 8.9E-16 1.9E-20 102.1 9.9 105 94-211 2-106 (107)
66 cd03181 GST_C_EFB1gamma GST_C 99.7 6.9E-16 1.5E-20 105.2 9.5 123 95-221 1-123 (123)
67 cd00570 GST_N_family Glutathio 99.7 5.1E-16 1.1E-20 95.0 8.0 71 5-77 1-71 (71)
68 cd03209 GST_C_Mu GST_C family, 99.7 7.5E-16 1.6E-20 104.8 9.0 113 95-219 2-114 (121)
69 cd03190 GST_C_ECM4_like GST_C 99.7 8.8E-16 1.9E-20 107.2 9.5 111 94-214 3-118 (142)
70 cd03183 GST_C_Theta GST_C fami 99.7 1.7E-15 3.6E-20 103.8 10.3 117 96-214 2-122 (126)
71 cd03185 GST_C_Tau GST_C family 99.6 9.8E-16 2.1E-20 104.9 8.8 112 94-216 2-117 (126)
72 KOG2903 Predicted glutathione 99.6 1.2E-15 2.6E-20 111.5 9.2 194 4-213 37-287 (319)
73 cd03182 GST_C_GTT2_like GST_C 99.6 1.8E-15 4E-20 102.2 9.4 115 92-208 1-117 (117)
74 cd03189 GST_C_GTT1_like GST_C 99.6 3.5E-15 7.6E-20 101.2 10.1 114 90-206 2-119 (119)
75 cd03177 GST_C_Delta_Epsilon GS 99.6 3.5E-15 7.5E-20 101.0 8.6 113 95-216 2-114 (118)
76 cd03054 GST_N_Metaxin GST_N fa 99.6 2.9E-15 6.2E-20 92.3 7.2 65 5-79 1-72 (72)
77 cd03208 GST_C_Alpha GST_C fami 99.6 1.1E-14 2.3E-19 101.0 10.5 115 95-218 3-119 (137)
78 cd03210 GST_C_Pi GST_C family, 99.6 8.1E-15 1.8E-19 100.3 9.1 111 95-218 3-116 (126)
79 cd03184 GST_C_Omega GST_C fami 99.6 1.4E-14 3E-19 98.9 7.4 109 95-216 2-115 (124)
80 cd03207 GST_C_8 GST_C family, 99.6 1E-14 2.3E-19 96.2 6.3 76 135-214 27-102 (103)
81 cd03198 GST_C_CLIC GST_C famil 99.5 6.3E-14 1.4E-18 95.6 7.8 87 130-216 21-126 (134)
82 cd03200 GST_C_JTV1 GST_C famil 99.5 6E-14 1.3E-18 91.1 7.2 95 73-204 1-95 (96)
83 cd03195 GST_C_4 GST_C family, 99.5 8.2E-14 1.8E-18 93.6 7.9 112 93-214 1-113 (114)
84 cd03179 GST_C_1 GST_C family, 99.5 4.7E-14 1E-18 93.4 6.5 104 95-203 2-105 (105)
85 PF13410 GST_C_2: Glutathione 99.5 7E-14 1.5E-18 85.3 6.8 68 134-201 2-69 (69)
86 PF00043 GST_C: Glutathione S- 99.5 8.6E-14 1.9E-18 90.4 7.2 74 132-206 22-95 (95)
87 KOG3027 Mitochondrial outer me 99.5 6.3E-13 1.4E-17 94.2 11.6 182 11-205 32-248 (257)
88 cd03206 GST_C_7 GST_C family, 99.5 1.4E-13 3.1E-18 90.3 7.7 99 100-208 2-100 (100)
89 cd03203 GST_C_Lambda GST_C fam 99.5 4.6E-13 9.9E-18 90.8 9.6 106 92-215 1-112 (120)
90 cd03204 GST_C_GDAP1 GST_C fami 99.5 2.1E-13 4.5E-18 90.2 7.2 79 130-208 21-111 (111)
91 cd03194 GST_C_3 GST_C family, 99.4 2E-12 4.2E-17 86.8 9.6 70 138-213 41-113 (114)
92 cd03201 GST_C_DHAR GST_C famil 99.4 4.1E-13 8.9E-18 91.0 5.9 80 137-216 29-112 (121)
93 cd03079 GST_N_Metaxin2 GST_N f 99.4 2E-12 4.4E-17 78.7 7.0 60 11-79 15-74 (74)
94 cd00299 GST_C_family Glutathio 99.3 3.6E-12 7.8E-17 83.3 6.1 99 100-202 2-100 (100)
95 PF14497 GST_C_3: Glutathione 99.3 2.7E-12 6E-17 84.0 3.3 66 135-204 32-99 (99)
96 cd03192 GST_C_Sigma_like GST_C 99.2 1.9E-11 4.1E-16 80.7 6.3 100 95-202 2-104 (104)
97 TIGR02190 GlrX-dom Glutaredoxi 99.2 3.2E-11 6.9E-16 75.4 6.7 72 3-77 8-79 (79)
98 PRK10638 glutaredoxin 3; Provi 99.2 3.6E-11 7.8E-16 75.9 6.8 74 2-77 1-74 (83)
99 cd03193 GST_C_Metaxin GST_C fa 99.2 3.6E-11 7.7E-16 76.9 6.3 70 134-203 15-88 (88)
100 cd03202 GST_C_etherase_LigE GS 99.2 4.3E-11 9.3E-16 81.5 6.9 68 136-204 56-123 (124)
101 cd03205 GST_C_6 GST_C family, 99.2 1.1E-10 2.3E-15 76.3 6.2 72 128-202 27-98 (98)
102 KOG3028 Translocase of outer m 99.1 4.7E-09 1E-13 79.7 14.5 180 13-205 17-234 (313)
103 cd03029 GRX_hybridPRX5 Glutare 99.1 8.6E-10 1.9E-14 67.7 7.3 71 4-77 2-72 (72)
104 cd03078 GST_N_Metaxin1_like GS 99.1 1.1E-09 2.3E-14 67.1 7.2 58 12-79 15-72 (73)
105 cd03211 GST_C_Metaxin2 GST_C f 99.0 4.3E-10 9.3E-15 76.7 4.9 69 135-203 54-126 (126)
106 PF14834 GST_C_4: Glutathione 99.0 4.2E-09 9.1E-14 68.4 8.8 113 92-214 1-114 (117)
107 cd03212 GST_C_Metaxin1_3 GST_C 99.0 1.2E-09 2.7E-14 75.5 6.3 72 133-204 59-134 (137)
108 cd03027 GRX_DEP Glutaredoxin ( 99.0 2.3E-09 5E-14 65.9 6.0 69 4-74 2-70 (73)
109 cd02066 GRX_family Glutaredoxi 98.8 1.3E-08 2.7E-13 62.1 6.1 70 4-75 1-70 (72)
110 PRK10329 glutaredoxin-like pro 98.8 1.4E-08 3.1E-13 63.5 6.1 61 4-67 2-62 (81)
111 cd02976 NrdH NrdH-redoxin (Nrd 98.8 1.3E-08 2.7E-13 62.4 5.4 63 4-68 1-63 (73)
112 cd03418 GRX_GRXb_1_3_like Glut 98.8 2.3E-08 5E-13 61.7 6.3 72 4-77 1-73 (75)
113 TIGR02196 GlrX_YruB Glutaredox 98.8 2.2E-08 4.7E-13 61.4 6.1 70 5-76 2-73 (74)
114 cd03197 GST_C_mPGES2 GST_C fam 98.8 1.6E-08 3.5E-13 69.8 5.8 62 142-204 83-145 (149)
115 COG0695 GrxC Glutaredoxin and 98.7 4.5E-08 9.8E-13 61.0 6.3 73 4-76 2-74 (80)
116 PRK11200 grxA glutaredoxin 1; 98.7 1.2E-07 2.7E-12 60.0 7.0 76 4-81 2-84 (85)
117 TIGR02181 GRX_bact Glutaredoxi 98.7 9.6E-08 2.1E-12 59.6 6.1 72 5-78 1-72 (79)
118 TIGR02200 GlrX_actino Glutared 98.6 9.5E-08 2.1E-12 59.2 4.9 71 4-76 1-75 (77)
119 cd03419 GRX_GRXh_1_2_like Glut 98.5 3.6E-07 7.7E-12 57.3 6.5 75 4-78 1-76 (82)
120 TIGR02189 GlrX-like_plant Glut 98.5 3.6E-07 7.7E-12 59.5 6.2 72 3-74 8-80 (99)
121 TIGR02194 GlrX_NrdH Glutaredox 98.5 3.1E-07 6.7E-12 56.2 5.6 57 5-64 1-57 (72)
122 TIGR02183 GRXA Glutaredoxin, G 98.5 5.6E-07 1.2E-11 57.0 6.8 75 5-81 2-83 (86)
123 PHA03050 glutaredoxin; Provisi 98.5 7.5E-07 1.6E-11 58.8 6.5 72 3-74 13-88 (108)
124 PF00462 Glutaredoxin: Glutare 98.4 2.3E-07 4.9E-12 54.6 3.5 60 5-66 1-60 (60)
125 TIGR00365 monothiol glutaredox 98.3 3.8E-06 8.3E-11 54.4 6.4 71 3-75 12-87 (97)
126 TIGR02180 GRX_euk Glutaredoxin 98.2 5E-06 1.1E-10 52.3 6.1 74 5-78 1-77 (84)
127 cd03028 GRX_PICOT_like Glutare 98.2 9.8E-06 2.1E-10 51.8 6.4 72 3-76 8-84 (90)
128 PF10568 Tom37: Outer mitochon 97.9 6.2E-05 1.3E-09 45.7 6.6 55 12-76 13-71 (72)
129 PRK12759 bifunctional gluaredo 97.8 5.8E-05 1.3E-09 61.8 7.0 70 2-74 1-79 (410)
130 cd03031 GRX_GRX_like Glutaredo 97.8 7.5E-05 1.6E-09 52.0 6.3 70 4-75 1-80 (147)
131 PRK10824 glutaredoxin-4; Provi 97.6 0.00022 4.8E-09 47.4 6.2 71 3-75 15-90 (115)
132 PF04399 Glutaredoxin2_C: Glut 97.6 0.00023 5E-09 48.4 6.2 68 136-208 57-124 (132)
133 KOG1752 Glutaredoxin and relat 97.4 0.00097 2.1E-08 43.5 6.4 75 2-76 13-88 (104)
134 PTZ00062 glutaredoxin; Provisi 97.3 0.00087 1.9E-08 49.4 6.4 70 3-74 113-187 (204)
135 cd02973 TRX_GRX_like Thioredox 97.3 0.0012 2.7E-08 39.3 5.9 58 4-67 2-64 (67)
136 cd03199 GST_C_GRX2 GST_C famil 97.2 0.0014 2.9E-08 44.4 5.8 66 137-207 59-124 (128)
137 KOG1147 Glutamyl-tRNA syntheta 97.2 0.00037 7.9E-09 57.4 3.2 119 62-212 44-162 (712)
138 cd03036 ArsC_like Arsenate Red 97.1 0.00061 1.3E-08 45.3 3.8 33 5-37 1-33 (111)
139 cd02977 ArsC_family Arsenate R 97.1 0.00095 2.1E-08 43.9 4.0 32 5-36 1-32 (105)
140 COG1393 ArsC Arsenate reductas 97.1 0.0011 2.3E-08 44.4 4.2 34 1-36 1-34 (117)
141 PRK01655 spxA transcriptional 97.0 0.0011 2.4E-08 45.4 4.2 32 5-36 2-33 (131)
142 PRK10026 arsenate reductase; P 97.0 0.0012 2.5E-08 45.7 4.3 35 2-36 1-35 (141)
143 cd03032 ArsC_Spx Arsenate Redu 97.0 0.0014 3E-08 43.9 4.2 32 5-36 2-33 (115)
144 TIGR01617 arsC_related transcr 96.8 0.0023 5E-08 42.9 4.0 32 5-36 1-32 (117)
145 PRK13344 spxA transcriptional 96.7 0.0028 6.1E-08 43.4 4.3 32 5-36 2-33 (132)
146 cd03035 ArsC_Yffb Arsenate Red 96.7 0.0026 5.6E-08 41.8 4.0 32 5-36 1-32 (105)
147 cd03033 ArsC_15kD Arsenate Red 96.7 0.0028 6E-08 42.2 4.0 33 4-36 1-33 (113)
148 PRK12559 transcriptional regul 96.7 0.0032 6.8E-08 43.1 4.3 33 5-37 2-34 (131)
149 COG4545 Glutaredoxin-related p 96.6 0.0077 1.7E-07 36.1 5.0 66 2-67 1-77 (85)
150 PRK10853 putative reductase; P 96.2 0.0083 1.8E-07 40.3 4.2 32 5-36 2-33 (118)
151 cd03030 GRX_SH3BGR Glutaredoxi 96.2 0.027 6E-07 35.9 6.1 68 5-74 2-79 (92)
152 TIGR01616 nitro_assoc nitrogen 96.1 0.0099 2.2E-07 40.4 4.1 33 4-36 2-34 (126)
153 COG0278 Glutaredoxin-related p 96.0 0.037 8E-07 35.4 6.0 70 3-74 15-90 (105)
154 TIGR00412 redox_disulf_2 small 95.8 0.094 2E-06 32.1 7.1 55 4-66 2-60 (76)
155 cd03034 ArsC_ArsC Arsenate Red 95.7 0.017 3.6E-07 38.4 3.9 31 5-35 1-31 (112)
156 TIGR00014 arsC arsenate reduct 95.7 0.018 3.8E-07 38.5 3.9 32 5-36 1-32 (114)
157 PF05768 DUF836: Glutaredoxin- 95.5 0.084 1.8E-06 32.8 6.2 55 4-63 1-57 (81)
158 cd03026 AhpF_NTD_C TRX-GRX-lik 95.2 0.089 1.9E-06 33.3 5.7 58 4-67 15-77 (89)
159 TIGR00411 redox_disulf_1 small 95.1 0.11 2.4E-06 31.9 5.9 57 4-64 2-62 (82)
160 PHA02125 thioredoxin-like prot 94.1 0.28 6.1E-06 29.8 5.9 52 5-62 2-53 (75)
161 cd01659 TRX_superfamily Thiore 93.4 0.23 4.9E-06 28.0 4.5 55 5-62 1-60 (69)
162 PF11287 DUF3088: Protein of u 93.2 0.39 8.5E-06 31.5 5.5 68 13-83 24-110 (112)
163 PF13192 Thioredoxin_3: Thiore 93.0 0.87 1.9E-05 27.7 6.8 57 4-68 2-62 (76)
164 PF03960 ArsC: ArsC family; I 91.0 0.28 6E-06 32.4 3.0 28 8-35 1-28 (110)
165 PF11801 Tom37_C: Tom37 C-term 90.9 0.51 1.1E-05 33.8 4.5 39 142-180 112-154 (168)
166 PF04908 SH3BGR: SH3-binding, 90.6 0.58 1.3E-05 30.3 4.1 69 4-74 2-85 (99)
167 KOG0911 Glutaredoxin-related p 85.4 2.8 6E-05 31.3 5.3 69 4-74 140-213 (227)
168 TIGR03143 AhpF_homolog putativ 84.5 3.1 6.7E-05 35.9 6.2 56 4-65 479-539 (555)
169 TIGR01295 PedC_BrcD bacterioci 83.9 10 0.00022 25.5 7.3 59 5-63 27-100 (122)
170 cd02953 DsbDgamma DsbD gamma f 82.3 3.5 7.6E-05 26.5 4.5 55 5-60 15-77 (104)
171 TIGR03140 AhpF alkyl hydropero 82.1 1.6 3.5E-05 37.2 3.5 64 4-68 120-183 (515)
172 PRK15317 alkyl hydroperoxide r 82.0 1.7 3.6E-05 37.2 3.5 74 4-78 119-196 (517)
173 KOG1668 Elongation factor 1 be 80.1 2.2 4.8E-05 31.9 3.1 60 144-210 10-69 (231)
174 cd02989 Phd_like_TxnDC9 Phosdu 79.7 14 0.00031 24.3 6.7 59 5-67 26-89 (113)
175 cd02949 TRX_NTR TRX domain, no 79.6 11 0.00023 23.9 6.0 57 5-65 17-79 (97)
176 PF00085 Thioredoxin: Thioredo 76.3 16 0.00035 22.9 7.7 70 5-78 21-102 (103)
177 cd02947 TRX_family TRX family; 75.4 15 0.00033 22.1 6.7 50 5-60 14-68 (93)
178 cd02975 PfPDO_like_N Pyrococcu 73.0 13 0.00027 24.6 5.1 53 5-61 25-81 (113)
179 COG3019 Predicted metal-bindin 70.7 8.4 0.00018 26.5 3.7 69 3-80 26-104 (149)
180 PHA03075 glutaredoxin-like pro 70.1 10 0.00022 25.2 3.9 69 1-80 1-70 (123)
181 TIGR02187 GlrX_arch Glutaredox 64.1 19 0.0004 26.9 4.9 55 5-63 137-194 (215)
182 cd04911 ACT_AKiii-YclM-BS_1 AC 60.8 11 0.00024 23.1 2.6 25 13-37 15-39 (76)
183 PF09635 MetRS-N: MetRS-N bind 60.8 7.4 0.00016 26.1 2.0 31 53-83 33-65 (122)
184 cd02963 TRX_DnaJ TRX domain, D 60.8 44 0.00095 21.8 6.3 55 5-63 28-89 (111)
185 cd02984 TRX_PICOT TRX domain, 58.5 42 0.00091 20.8 6.6 56 5-64 18-79 (97)
186 cd02997 PDI_a_PDIR PDIa family 57.0 26 0.00057 22.0 4.2 54 5-60 21-80 (104)
187 cd02956 ybbN ybbN protein fami 55.4 46 0.00099 20.6 5.1 56 5-64 16-77 (96)
188 PHA02278 thioredoxin-like prot 54.9 56 0.0012 21.1 6.8 61 5-65 18-84 (103)
189 PF04134 DUF393: Protein of un 54.5 37 0.0008 22.1 4.7 72 7-79 1-77 (114)
190 PTZ00051 thioredoxin; Provisio 54.0 51 0.0011 20.5 5.9 52 5-60 22-76 (98)
191 COG2761 FrnE Predicted dithiol 53.4 36 0.00078 25.7 4.7 18 1-18 4-21 (225)
192 COG3118 Thioredoxin domain-con 52.8 1.2E+02 0.0025 24.2 7.5 76 3-82 45-132 (304)
193 PRK03731 aroL shikimate kinase 52.6 21 0.00046 25.2 3.5 33 1-33 1-33 (171)
194 PF09849 DUF2076: Uncharacteri 52.6 1E+02 0.0023 23.7 7.2 67 68-154 5-71 (247)
195 TIGR02681 phage_pRha phage reg 50.3 19 0.0004 23.8 2.6 26 56-81 2-28 (108)
196 cd02948 TRX_NDPK TRX domain, T 49.3 44 0.00095 21.3 4.3 54 5-63 21-81 (102)
197 TIGR02187 GlrX_arch Glutaredox 48.7 83 0.0018 23.4 6.2 52 5-60 23-82 (215)
198 cd02952 TRP14_like Human TRX-r 48.6 81 0.0017 21.1 6.8 50 11-60 38-95 (119)
199 PF10022 DUF2264: Uncharacteri 47.4 67 0.0015 26.3 5.8 111 56-177 98-211 (361)
200 cd02957 Phd_like Phosducin (Ph 44.2 42 0.00092 21.8 3.7 58 5-67 28-90 (113)
201 cd02951 SoxW SoxW family; SoxW 42.3 87 0.0019 20.7 5.1 16 5-20 18-33 (125)
202 cd02993 PDI_a_APS_reductase PD 41.9 58 0.0012 21.0 4.0 54 4-60 24-83 (109)
203 KOG2824 Glutaredoxin-related p 41.3 42 0.0009 26.1 3.5 59 15-75 149-211 (281)
204 PRK11657 dsbG disulfide isomer 41.2 41 0.00089 25.8 3.6 20 5-24 121-140 (251)
205 cd03003 PDI_a_ERdj5_N PDIa fam 41.1 90 0.002 19.6 5.9 52 5-60 22-77 (101)
206 cd02999 PDI_a_ERp44_like PDIa 41.1 34 0.00073 21.9 2.7 53 5-60 22-77 (100)
207 PF09413 DUF2007: Domain of un 40.4 24 0.00051 20.6 1.8 30 6-35 2-31 (67)
208 TIGR01068 thioredoxin thioredo 40.2 88 0.0019 19.2 6.1 52 5-60 18-73 (101)
209 cd02962 TMX2 TMX2 family; comp 39.6 1.3E+02 0.0029 21.1 6.6 58 5-66 51-121 (152)
210 PRK15371 effector protein YopJ 39.5 1E+02 0.0022 24.3 5.4 65 138-203 23-87 (287)
211 PF15608 PELOTA_1: PELOTA RNA 39.3 71 0.0015 20.7 3.9 30 5-34 58-87 (100)
212 cd03020 DsbA_DsbC_DsbG DsbA fa 39.2 44 0.00095 24.4 3.4 22 4-25 80-101 (197)
213 PF12290 DUF3802: Protein of u 38.6 61 0.0013 21.4 3.5 39 130-171 56-94 (113)
214 PRK09381 trxA thioredoxin; Pro 37.7 1.1E+02 0.0023 19.5 7.1 57 5-65 25-87 (109)
215 cd01968 Nitrogenase_NifE_I Nit 37.7 2.4E+02 0.0052 23.4 8.4 82 70-168 218-299 (410)
216 cd02992 PDI_a_QSOX PDIa family 37.5 66 0.0014 21.1 3.8 54 5-60 23-83 (114)
217 PF01323 DSBA: DSBA-like thior 37.1 53 0.0011 23.5 3.6 35 4-38 1-40 (193)
218 TIGR01126 pdi_dom protein disu 36.4 57 0.0012 20.2 3.3 52 5-60 17-74 (102)
219 cd03002 PDI_a_MPD1_like PDI fa 36.4 53 0.0011 20.9 3.2 54 5-60 22-79 (109)
220 PF03421 YopJ: YopJ Serine/Thr 36.0 97 0.0021 22.5 4.6 63 141-204 2-64 (177)
221 COG5515 Uncharacterized conser 35.5 40 0.00087 19.5 2.0 22 4-25 2-27 (70)
222 PF13098 Thioredoxin_2: Thiore 35.2 38 0.00082 21.8 2.3 36 4-39 8-50 (112)
223 cd03004 PDI_a_ERdj5_C PDIa fam 35.2 1.1E+02 0.0023 19.3 4.5 52 5-60 23-78 (104)
224 cd02955 SSP411 TRX domain, SSP 35.1 1.4E+02 0.0031 20.1 5.9 65 5-69 19-97 (124)
225 cd02987 Phd_like_Phd Phosducin 34.6 97 0.0021 22.3 4.5 59 5-68 87-150 (175)
226 PRK10877 protein disulfide iso 34.1 63 0.0014 24.5 3.6 22 4-25 110-131 (232)
227 PF12062 HSNSD: heparan sulfat 33.4 1.1E+02 0.0024 25.9 5.0 50 6-70 64-118 (487)
228 KOG2501 Thioredoxin, nucleored 33.3 83 0.0018 22.3 3.8 32 9-40 41-79 (157)
229 COG0703 AroK Shikimate kinase 32.8 70 0.0015 23.1 3.4 34 1-34 1-34 (172)
230 PRK09266 hypothetical protein; 32.7 42 0.00092 25.9 2.6 60 22-81 200-259 (266)
231 cd02978 KaiB_like KaiB-like fa 32.2 1.1E+02 0.0025 18.4 3.8 53 4-60 3-60 (72)
232 cd03021 DsbA_GSTK DsbA family, 31.7 76 0.0016 23.4 3.7 35 3-37 1-39 (209)
233 PRK13947 shikimate kinase; Pro 31.5 69 0.0015 22.5 3.3 32 2-33 1-32 (171)
234 PRK14368 Maf-like protein; Pro 31.2 73 0.0016 23.4 3.4 36 1-39 1-36 (193)
235 cd02985 TRX_CDSP32 TRX family, 31.1 1.2E+02 0.0026 19.3 4.2 55 5-60 19-76 (103)
236 cd02959 ERp19 Endoplasmic reti 31.0 1.6E+02 0.0034 19.4 5.9 54 5-60 23-81 (117)
237 cd02994 PDI_a_TMX PDIa family, 31.0 1.4E+02 0.003 18.7 5.7 52 5-60 20-76 (101)
238 cd02972 DsbA_family DsbA famil 30.1 76 0.0016 19.2 3.1 22 5-26 1-22 (98)
239 TIGR01764 excise DNA binding d 29.9 90 0.0019 16.2 3.1 26 52-77 23-48 (49)
240 PRK13949 shikimate kinase; Pro 29.8 79 0.0017 22.5 3.4 33 2-34 1-33 (169)
241 cd02996 PDI_a_ERp44 PDIa famil 29.5 1.3E+02 0.0028 19.2 4.1 52 5-60 22-83 (108)
242 cd02998 PDI_a_ERp38 PDIa famil 29.2 99 0.0021 19.2 3.6 53 5-60 22-80 (105)
243 cd02954 DIM1 Dim1 family; Dim1 28.7 1.8E+02 0.0039 19.3 5.9 57 5-65 18-80 (114)
244 PF11823 DUF3343: Protein of u 28.7 94 0.002 18.5 3.1 32 5-36 3-34 (73)
245 cd02950 TxlA TRX-like protein 28.2 2E+02 0.0044 19.7 7.0 54 5-60 24-81 (142)
246 PTZ00102 disulphide isomerase; 28.1 3.6E+02 0.0079 22.6 8.3 75 5-83 53-141 (477)
247 cd03005 PDI_a_ERp46 PDIa famil 27.4 1.1E+02 0.0025 18.9 3.6 52 5-60 20-78 (102)
248 PF09314 DUF1972: Domain of un 27.3 65 0.0014 23.5 2.6 21 61-81 153-173 (185)
249 KOG0190 Protein disulfide isom 26.7 3.1E+02 0.0067 23.6 6.6 75 5-83 46-135 (493)
250 PRK11784 tRNA 2-selenouridine 26.2 1.2E+02 0.0027 24.6 4.2 74 4-78 90-163 (345)
251 cd01976 Nitrogenase_MoFe_alpha 26.2 3.9E+02 0.0085 22.4 7.4 84 71-172 233-316 (421)
252 PF11732 Thoc2: Transcription- 26.1 86 0.0019 19.3 2.5 34 169-203 43-76 (77)
253 PRK10996 thioredoxin 2; Provis 25.9 2.2E+02 0.0048 19.4 9.0 56 5-64 56-117 (139)
254 KOG3425 Uncharacterized conser 25.7 2.2E+02 0.0048 19.3 5.9 70 10-79 42-122 (128)
255 cd02995 PDI_a_PDI_a'_C PDIa fa 25.6 55 0.0012 20.5 1.8 51 5-60 22-78 (104)
256 PRK00293 dipZ thiol:disulfide 25.3 4.6E+02 0.0099 23.1 7.7 55 5-60 478-539 (571)
257 TIGR01283 nifE nitrogenase mol 25.2 3.3E+02 0.0071 23.1 6.7 74 70-160 257-330 (456)
258 PF07862 Nif11: Nitrogen fixat 24.2 1.1E+02 0.0023 16.5 2.6 22 193-214 4-25 (49)
259 COG3150 Predicted esterase [Ge 24.0 95 0.0021 22.5 2.8 31 5-35 3-33 (191)
260 PF07511 DUF1525: Protein of u 23.8 1.1E+02 0.0024 20.4 2.9 28 51-78 79-107 (114)
261 PF12728 HTH_17: Helix-turn-he 23.5 1.3E+02 0.0029 16.1 3.4 28 52-79 23-50 (51)
262 COG3646 Uncharacterized phage- 21.8 1.1E+02 0.0024 22.0 2.8 30 134-163 87-116 (167)
263 cd02965 HyaE HyaE family; HyaE 21.1 2.1E+02 0.0045 19.0 3.8 58 5-66 31-96 (111)
264 PRK08118 topology modulation p 20.9 1.4E+02 0.0031 21.1 3.3 32 2-33 1-32 (167)
265 TIGR03493 cellullose_BcsF cell 20.9 59 0.0013 18.9 1.0 45 166-210 2-46 (62)
266 cd00449 PLPDE_IV PyridoxaL 5'- 20.8 81 0.0018 24.0 2.2 58 22-79 196-255 (256)
267 PF06110 DUF953: Eukaryotic pr 20.5 2.8E+02 0.006 18.6 6.1 63 9-71 34-107 (119)
268 PF13728 TraF: F plasmid trans 20.5 1.6E+02 0.0035 22.0 3.7 32 5-36 124-159 (215)
No 1
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=1.4e-41 Score=254.14 Aligned_cols=211 Identities=44% Similarity=0.809 Sum_probs=177.3
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCC
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
.|+||+++.|++++|++++|+++||+|+.+.++..++++++++++++||.|+||+|+++|.+|+||.||++||+++++..
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 48999999999999999999999999999999998888889999999999999999999999999999999999999754
Q ss_pred CCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Q 027634 84 GNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGD 163 (221)
Q Consensus 84 ~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 163 (221)
+.+ |+|.++.+++++++|+.+..+.+.......+....+.+..+...+....+....++.+.++.||++|++++|++|+
T Consensus 82 ~~~-l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd 160 (214)
T PLN02473 82 GTD-LLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGD 160 (214)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCC
Confidence 334 9999999999999999998887765443333333343322334455667777888999999999999988999999
Q ss_pred CcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhh
Q 027634 164 EFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQ 215 (221)
Q Consensus 164 ~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 215 (221)
++|+|||++++.+.++..........+.+|+|.+|++++.+||+|+++++..
T Consensus 161 ~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~~ 212 (214)
T PLN02473 161 EFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMELA 212 (214)
T ss_pred CCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHHh
Confidence 9999999999998876543221223678999999999999999999998753
No 2
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.9e-39 Score=242.80 Aligned_cols=212 Identities=43% Similarity=0.818 Sum_probs=173.7
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCC
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
.++||+.+.| +++|++++|+++|++|+.+.++...+++++++|+++||.|+||+|+++|.+|+||.+|++||+++++..
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 3899997654 689999999999999999999987777778999999999999999999999999999999999999864
Q ss_pred CCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Q 027634 84 GNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGD 163 (221)
Q Consensus 84 ~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 163 (221)
++. |+|.++.+++++++|+.+.+..+.+..........+....+...+++..+...+.+.+.+..||+.|++++|++|+
T Consensus 81 ~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 159 (215)
T PLN02395 81 GPD-LLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGD 159 (215)
T ss_pred CcC-cCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Confidence 334 9999999999999999998887776654443333332221223344556677888999999999999988999999
Q ss_pred CcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhc
Q 027634 164 EFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQ 217 (221)
Q Consensus 164 ~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 217 (221)
++|+||+++++++.+..........++.+|+|.+|++++.+||++++++...+.
T Consensus 160 ~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~~~ 213 (215)
T PLN02395 160 FVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKYSL 213 (215)
T ss_pred CcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHhcC
Confidence 999999999998877643211122467799999999999999999999987654
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1.4e-39 Score=242.60 Aligned_cols=195 Identities=18% Similarity=0.294 Sum_probs=162.5
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEKG 84 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~ 84 (221)
|+||+++.||+|++++++|+++|++|+.+.+++. +++++|+++||.|+||+|+++|.+|+||.||++||+++++..
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~- 86 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP- 86 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC-
Confidence 7999999999999999999999999999999874 456899999999999999999999999999999999999865
Q ss_pred CCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC
Q 027634 85 NKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDE 164 (221)
Q Consensus 85 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 164 (221)
. |+|.++.++++++.|+.++.+.+...... +. ...+...+...+.+.+.+..+|++|++++|++|++
T Consensus 87 -~-l~p~~~~~ra~~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~ 153 (211)
T PRK09481 87 -P-LMPVYPVARGESRLMMHRIEKDWYSLMNK------IV-----NGSASEADAARKQLREELLAIAPVFGEKPYFMSEE 153 (211)
T ss_pred -C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHH------Hh-----cCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 5 99999999999999988765433211111 10 12234556777889999999999999899999999
Q ss_pred cchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhc
Q 027634 165 FSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQ 217 (221)
Q Consensus 165 ~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 217 (221)
+|+|||++++.+.++...+.. .....+|+|++|++++.+||++++++.....
T Consensus 154 ~t~AD~~l~~~~~~~~~~~~~-~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 154 FSLVDCYLAPLLWRLPVLGIE-LSGPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred ccHHHHHHHHHHHHHHhcCCC-CCCCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 999999999999877655431 1125799999999999999999999876543
No 4
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=2.2e-38 Score=236.85 Aligned_cols=199 Identities=23% Similarity=0.376 Sum_probs=162.0
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEc-----CC--eeEeehHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQD-----EK--ISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-----~~--~~l~es~aI~~yL~ 77 (221)
++||+.+ +++|++++++|+++||+|+.+.+++..+++..++|+++||.|+||+|++ +| .+|+||.||++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 5999887 7999999999999999999999999877777899999999999999996 45 47999999999999
Q ss_pred HhCCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCC
Q 027634 78 ENYPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGES 157 (221)
Q Consensus 78 ~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 157 (221)
++++ . +.|.++.+++++++|+.+..+.+.+..... ..+.. .....++...+.....+.+.|..||++|+++
T Consensus 81 ~~~~----~-l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 151 (215)
T PRK13972 81 EKTG----L-FLSHETRERAATLQWLFWQVGGLGPMLGQN---HHFNH-AAPQTIPYAIERYQVETQRLYHVLNKRLENS 151 (215)
T ss_pred HhcC----C-CCCCCHHHHHHHHHHHHHHhhccCcceeee---eeeec-cCCCCCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 9985 3 778889999999999998877766533211 00110 0112234556667788999999999999989
Q ss_pred CcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhh
Q 027634 158 RFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQK 216 (221)
Q Consensus 158 ~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 216 (221)
+|++|+++|+|||++++.+........ ..+.+|+|.+|++++.+||+|++++...+
T Consensus 152 ~~l~Gd~~t~ADi~l~~~~~~~~~~~~---~~~~~P~l~~w~~r~~~rp~~~~~~~~~~ 207 (215)
T PRK13972 152 PWLGGENYSIADIACWPWVNAWTRQRI---DLAMYPAVKNWHERIRSRPATGQALLKAQ 207 (215)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhhcCC---cchhCHHHHHHHHHHHhCHHHHHHHHHhc
Confidence 999999999999999887754433322 35789999999999999999999988654
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=5.4e-38 Score=234.50 Aligned_cols=204 Identities=19% Similarity=0.260 Sum_probs=163.2
Q ss_pred ceEEecCC--CChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCC
Q 027634 4 PVKVYGPP--LSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYP 81 (221)
Q Consensus 4 ~~~L~~~~--~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~ 81 (221)
.++||+.+ .|++|++++++|+++||+|+.+.+++.++++..++|+++||.|+||+|+++|.+|+||.||++||+++++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~ 84 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFA 84 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcC
Confidence 47999976 6999999999999999999999999988877889999999999999999999999999999999999998
Q ss_pred CCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC-CCcc
Q 027634 82 EKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGE-SRFL 160 (221)
Q Consensus 82 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l 160 (221)
.....+++|.++.+++++++|+.+..+.+............+ .........+...+.+.+.+..+|++|++ ++|+
T Consensus 85 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l 160 (214)
T PRK15113 85 PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVF----AGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNL 160 (214)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhc----cCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEe
Confidence 542112889999999999999998876554321110000011 11122333456667789999999999975 4799
Q ss_pred cCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhc
Q 027634 161 AGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQ 217 (221)
Q Consensus 161 ~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 217 (221)
+|+ +|+|||++++.+.++...+. .+ .|+|.+|++|+.+||+|+++++....
T Consensus 161 ~G~-~TlADi~l~~~l~~~~~~~~---~~--~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 161 FGE-WCIADTDLALMLNRLVLHGD---EV--PERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred eCC-ccHHHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 995 99999999999987765433 12 29999999999999999999997654
No 6
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-38 Score=215.99 Aligned_cols=209 Identities=22% Similarity=0.271 Sum_probs=177.7
Q ss_pred CCcceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCC-CCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHh
Q 027634 1 MATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKG-DHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCEN 79 (221)
Q Consensus 1 m~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 79 (221)
|+.+.+||++..|.+++|+|++|+.+||+|+..+|++.++ ++.+.+|.+.||.++||+|++||.+|+||.||++||++.
T Consensus 2 ~~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 2 SAAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred CcccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhc
Confidence 4668999999999999999999999999999999999877 455789999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC--C
Q 027634 80 YPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGE--S 157 (221)
Q Consensus 80 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~ 157 (221)
+++. . |+|+|+.-|+.++++...+.+.+.+.....+....- +........-....+.+.+..||+.|.. +
T Consensus 82 ~P~p--p-LLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~-----ek~~~~~~~W~q~~ItkGF~ALEklL~~~aG 153 (217)
T KOG0868|consen 82 YPDP--P-LLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLN-----EKEPGYGDQWAQHFITKGFTALEKLLKSHAG 153 (217)
T ss_pred CCCC--C-CCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhc-----ccccchhhHHHHHHHHHhHHHHHHHHHHccC
Confidence 9987 6 999999999999999999999988865555443332 2222222333445567889999999965 6
Q ss_pred CcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhccCC
Q 027634 158 RFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQQHS 220 (221)
Q Consensus 158 ~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~ 220 (221)
.|.+|+++|+||+++.+.+.....+.. .+..||.+.+..+.+.+.|+|+.++...++-.+
T Consensus 154 kycvGDevtiADl~L~pqv~nA~rf~v---dl~PYPti~ri~e~l~elpaFq~ahP~nQPD~P 213 (217)
T KOG0868|consen 154 KYCVGDEVTIADLCLPPQVYNANRFHV---DLTPYPTITRINEELAELPAFQAAHPDNQPDTP 213 (217)
T ss_pred CcccCceeehhhhccchhhhhhhhccc---cCCcCchHHHHHHHHHhCHHHHhcCCCCCCCCC
Confidence 899999999999999999998865553 688999999999999999999999987776544
No 7
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=4.4e-37 Score=229.23 Aligned_cols=204 Identities=23% Similarity=0.352 Sum_probs=163.6
Q ss_pred EEecCCCChhhHHHHHHHHhcCCcceEEEeccCC-CCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCCC
Q 027634 6 KVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAK-GDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEKG 84 (221)
Q Consensus 6 ~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~ 84 (221)
+||++..||+++++|++|+++||+|+.+.++... +++..+++.++||.|++|+|+++|.+|+||.+|++||+++++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~- 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDP- 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCC-
Confidence 5899999999999999999999999999998732 34556889999999999999999999999999999999999865
Q ss_pred CCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC--CCcccC
Q 027634 85 NKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGE--SRFLAG 162 (221)
Q Consensus 85 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 162 (221)
. ++|.++.+++++++|+.+....+........... +.+..+ .......+...+.+.+.|+.||++|++ ++|++|
T Consensus 80 -~-l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 155 (210)
T TIGR01262 80 -P-LLPADPIKRARVRALALLIACDIHPLNNLRVLQY-LREKLG-VEEEARNRWYQHWISKGFAALEALLQPHAGAFCVG 155 (210)
T ss_pred -C-CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHH-HHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeC
Confidence 5 9999999999999999988766654322111111 111001 122233444566799999999999986 469999
Q ss_pred CCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhc
Q 027634 163 DEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQ 217 (221)
Q Consensus 163 ~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 217 (221)
+++|+|||++++++.+...... .++.||+|++|++++.+||+|++++...++
T Consensus 156 ~~~T~ADi~~~~~l~~~~~~~~---~~~~~p~l~~~~~~~~~rp~~~~~~~~~~~ 207 (210)
T TIGR01262 156 DTPTLADLCLVPQVYNAERFGV---DLTPYPTLRRIAAALAALPAFQRAHPENQP 207 (210)
T ss_pred CCCCHHHHHHHHHHHHHHHcCC---CcccchHHHHHHHHHhcCHHHHHhCcccCC
Confidence 9999999999999988754432 357899999999999999999999998753
No 8
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=6.1e-37 Score=227.01 Aligned_cols=196 Identities=20% Similarity=0.366 Sum_probs=161.0
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCC-CCChhhhhhCCCCCCCeEE-cCCeeEeehHHHHHHHHHhCCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGD-HKKPDFLKIQPFGQVPAFQ-DEKISLLESRAICRYVCENYPE 82 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~ 82 (221)
|+||+.+.| ++++++++|+++||+|+.+.|++.+++ ...++|.++||.|+||+|+ ++|.+|+||.+|++||+++++.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 489998866 799999999999999999999987653 3568899999999999998 5779999999999999999986
Q ss_pred CCCCccc-CCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCccc
Q 027634 83 KGNKGLF-GTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLA 161 (221)
Q Consensus 83 ~~~~~l~-p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 161 (221)
. . ++ |.++.+++++++|+.+..+.+....... +. ....+...+...+.+.+.|+.+|+.|++++|++
T Consensus 80 ~--~-l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 147 (201)
T PRK10542 80 R--Q-LLAPVGSLSRYHTIEWLNYIATELHKGFTPL-----FR----PDTPEEYKPTVRAQLEKKFQYVDEALADEQWIC 147 (201)
T ss_pred c--c-cCCCCCcHHHHHHHHHHHHHHhhhhhhhhhc-----cC----CCChHHHHHHHHHHHHHHHHHHHHHhcCCCeee
Confidence 5 4 55 6778899999999988766654432211 11 122334445667889999999999999899999
Q ss_pred CCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhh
Q 027634 162 GDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQK 216 (221)
Q Consensus 162 G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 216 (221)
|+++|+|||++++.+.+...... ..+.+|+|.+|++++.++|+|+++++...
T Consensus 148 G~~~s~ADi~l~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~k~~~~~~~ 199 (201)
T PRK10542 148 GQRFTIADAYLFTVLRWAYAVKL---NLEGLEHIAAYMQRVAERPAVAAALKAEG 199 (201)
T ss_pred CCCCcHHhHHHHHHHHHhhccCC---CcccchHHHHHHHHHHcCHHHHHHHHHcc
Confidence 99999999999999888765443 25679999999999999999999998754
No 9
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-37 Score=222.11 Aligned_cols=198 Identities=19% Similarity=0.290 Sum_probs=166.7
Q ss_pred cceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhC-CCCCCCeEEcCCeeEeehHHHHHHHHHhCC
Q 027634 3 TPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQ-PFGQVPAFQDEKISLLESRAICRYVCENYP 81 (221)
Q Consensus 3 ~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~vP~l~~~~~~l~es~aI~~yL~~~~~ 81 (221)
..++||++..|||++|++++|+++||+|+.+.+++. ++++++++.| +.++||||+++|..|+||..|++||++.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~---~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~ 84 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT---NKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWP 84 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC---CCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhcc
Confidence 349999999999999999999999999999999997 4789999999 789999999999999999999999999999
Q ss_pred CCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhC-CCCcc
Q 027634 82 EKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLG-ESRFL 160 (221)
Q Consensus 82 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l 160 (221)
+. ++ ++|.||.+|++++.|+..++..+........ .....+..+...+.+...|..||+.|+ +++|+
T Consensus 85 ~~-~~-iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~----------~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~f 152 (231)
T KOG0406|consen 85 SG-PP-ILPSDPYERAQARFWAEYIDKKVFFVGRFVV----------AAKGGEEQEAAKEELREALKVLEEELGKGKDFF 152 (231)
T ss_pred CC-CC-CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH----------hhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 63 24 9999999999999999998875543322221 123335566778889999999999998 78999
Q ss_pred cCCCcchhhhcchhhhhHHhhcc-----ccccccccCchHHHHHHHHhcchhHHHHHhhh
Q 027634 161 AGDEFSLADLSHLPNAHYLVNAT-----DRGEILTSRDNVGRWWGEISNRDSWKKVVDMQ 215 (221)
Q Consensus 161 ~G~~~t~aD~~~~~~l~~~~~~~-----~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 215 (221)
.|++++++|+++++.+.++.... ......+.+|+|.+|.+|+.++|++++++...
T Consensus 153 gG~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~ 212 (231)
T KOG0406|consen 153 GGETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDS 212 (231)
T ss_pred CCCCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCH
Confidence 99999999999997777765541 12334578999999999999999999987643
No 10
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=3.4e-36 Score=230.68 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=162.6
Q ss_pred ceEEecCCCChhhHHHHHHHHhc------CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC----CeeEeehHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEK------DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE----KISLLESRAIC 73 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~------gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~----~~~l~es~aI~ 73 (221)
.|+||+.+ ||+|+|++++|+++ |++|+.+.|++..+++..++|+++||.|+||+|+++ |.+|+||.||+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 48999976 99999999999997 899999999998777778999999999999999965 36899999999
Q ss_pred HHHHHhCCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 027634 74 RYVCENYPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKR 153 (221)
Q Consensus 74 ~yL~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 153 (221)
+||+++++ . |+|.++.+++++++|+.+..... ......+ ...+.. .....+...+...+++.+.|+.||++
T Consensus 123 ~YL~~~~~----~-L~P~~~~era~v~~wl~~~~~~~-~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~L~~le~~ 193 (264)
T PRK11752 123 LYLAEKFG----A-FLPKDLAARTETLNWLFWQQGSA-PFLGGGF-GHFYAY--APEKIEYAINRFTMEAKRQLDVLDKQ 193 (264)
T ss_pred HHHHHhcC----C-cCCCCHHHHHHHHHHHHHHhhhh-hHHHHHH-HHHHHh--CCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 4 89999999999999998876543 1111111 111110 11222445566777889999999999
Q ss_pred hCCCCcccCCCcchhhhcchhhhhHHhhcc----ccccccccCchHHHHHHHHhcchhHHHHHhhhhc
Q 027634 154 LGESRFLAGDEFSLADLSHLPNAHYLVNAT----DRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQ 217 (221)
Q Consensus 154 L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~----~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 217 (221)
|++++|++|+++|+|||++++.+.++.... .....++.+|+|.+|++++.+||+|++++..++.
T Consensus 194 L~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~~ 261 (264)
T PRK11752 194 LAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNRT 261 (264)
T ss_pred hccCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcccc
Confidence 998899999999999999999887764321 1112357799999999999999999999987754
No 11
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-36 Score=223.04 Aligned_cols=194 Identities=28% Similarity=0.513 Sum_probs=168.8
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCe-eEeehHHHHHHHHHhCCCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKI-SLLESRAICRYVCENYPEK 83 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~-~l~es~aI~~yL~~~~~~~ 83 (221)
++||+.+.||+|+|++++|.++|++|+.+.|++.. +.+.++|+++||.|+||+|+++|. +|+||.||++||+++++..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 48999999999999999999999999999999987 778899999999999999998775 8999999999999999976
Q ss_pred CCCcccCCChh---HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCC-ChHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 027634 84 GNKGLFGTNPL---AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQ-DEGVIKQNEEKLAKVLDVYEKRLGESRF 159 (221)
Q Consensus 84 ~~~~l~p~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~ 159 (221)
+ ++|.++. +++++..|..+....+.+......... ... ... .++..+...+.+...+..+|..|++++|
T Consensus 80 --~-l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 152 (211)
T COG0625 80 --P-LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRAL-LGS---EPELLEAALEAARAEIRALLALLEALLADGPY 152 (211)
T ss_pred --C-cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh-ccc---cccccHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 5 8998884 788888999998888877666655443 222 122 5677888899999999999999999999
Q ss_pred ccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHH
Q 027634 160 LAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWK 209 (221)
Q Consensus 160 l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 209 (221)
++|+++|+||+++++.+.++..... ..+.+|+|.+|++|+.++|+++
T Consensus 153 l~G~~~tiAD~~~~~~~~~~~~~~~---~~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 153 LAGDRFTIADIALAPLLWRLALLGE---ELADYPALKAWYERVLARPAFR 199 (211)
T ss_pred ccCCCCCHHHHHHHHHHHHhhhcCc---ccccChHHHHHHHHHHcCCchh
Confidence 9999999999999999998666654 2378999999999999999965
No 12
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=222.26 Aligned_cols=208 Identities=31% Similarity=0.500 Sum_probs=182.4
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCC
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
.++||+++.|+.|+++.+++.++|++|+.+.+++..+++++++|+++||.|+||+|+++|..++||.||+.||.++|. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~-~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYG-P 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcC-C
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcc-cCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccC
Q 027634 84 GNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAP-RMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAG 162 (221)
Q Consensus 84 ~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 162 (221)
....++|.+..+++.+++|+.+..+.+..... ....+.+ ......+....++..+.+.+.+..+|..|.++.|+.|
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g 157 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTF---ERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAG 157 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccc---cceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccC
Confidence 33339999999999999999999999888643 2333444 3445667888899999999999999999999999999
Q ss_pred CCcchhhhcchhhhhHHh-hccccccccccCchHHHHHHHHhcchhHHHHHhhhh
Q 027634 163 DEFSLADLSHLPNAHYLV-NATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQK 216 (221)
Q Consensus 163 ~~~t~aD~~~~~~l~~~~-~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 216 (221)
+++|+||+.+.+.+..+. ... ......++|++.+|++++.++|++++......
T Consensus 158 ~~~tlADl~~~~~~~~~~~~~~-~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~~ 211 (226)
T KOG0867|consen 158 DQLTLADLSLASTLSQFQGKFA-TEKDFEKYPKVARWYERIQKRPAYEEANEKGA 211 (226)
T ss_pred CcccHHHHHHhhHHHHHhHhhh-hhhhhhhChHHHHHHHHHHhCccHHHHHHHHH
Confidence 999999999999999884 222 23567889999999999999999999776443
No 13
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=2.4e-35 Score=218.58 Aligned_cols=198 Identities=21% Similarity=0.269 Sum_probs=158.0
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE-cCCeeEeehHHHHHHHHHhCCCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ-DEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
++||+++.||+++++|++|+++||+|+.+.++...+ .+++.+.||.|+||+|+ ++|.+|+||.+|++||+++++..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~---~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA---DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC---chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 489999999999999999999999999998887543 35677789999999998 67899999999999999998654
Q ss_pred CCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Q 027634 84 GNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGD 163 (221)
Q Consensus 84 ~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 163 (221)
. |+|.++.+++++++|..+.++.+..... ...... .+ .....+...+...+.+.+.|+.||++|++++ ++|+
T Consensus 78 --~-l~p~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~-~~--~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd 149 (202)
T PRK10357 78 --A-MLPRDPLAALRVRQLEALADGIMDAALV-SVREQA-RP--AAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTD 149 (202)
T ss_pred --C-CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-Cc--cccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCC
Confidence 5 9999999999999998876655533322 122111 11 2233445566778889999999999998878 9999
Q ss_pred CcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHh
Q 027634 164 EFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVD 213 (221)
Q Consensus 164 ~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 213 (221)
++|+||+++++.+.++.....+......+|+|.+|++++.+||+|+++..
T Consensus 150 ~~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~ 199 (202)
T PRK10357 150 TVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTEP 199 (202)
T ss_pred CcCHHHHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcCC
Confidence 99999999999998775432212234679999999999999999998653
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=5.7e-34 Score=211.35 Aligned_cols=193 Identities=19% Similarity=0.209 Sum_probs=145.8
Q ss_pred CCcceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhh--------hhCCCCCCCeEEcCCeeEeehHHH
Q 027634 1 MATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFL--------KIQPFGQVPAFQDEKISLLESRAI 72 (221)
Q Consensus 1 m~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~--------~~~p~~~vP~l~~~~~~l~es~aI 72 (221)
|.++++||+++.+++++++|++|+++||+|+.+.++.. . +++. +.||.|+||+|++||.+|+||.||
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~----~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI 75 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGEN----G-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAI 75 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEecccc----c-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHH
Confidence 77889999999999999999999999999999977421 1 2332 479999999999999999999999
Q ss_pred HHHHHHhCCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHH
Q 027634 73 CRYVCENYPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEK 152 (221)
Q Consensus 73 ~~yL~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~ 152 (221)
++||+++++ +.+.+..+++.++.+.....+.... ......+ .+...+...+.+.+.+..||+
T Consensus 76 ~~YLa~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--------~~~~~~~~~~~~~~~l~~le~ 137 (205)
T PTZ00057 76 VRYLSKKYK------ICGESELNEFYADMIFCGVQDIHYK----FNNTNLF--------KQNETTFLNEELPKWSGYFEN 137 (205)
T ss_pred HHHHHHHcC------CCCCCHHHHHHHHHHHHHHHHHHHH----HhhhHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 4455555555554443322211100 0000000 112234456788999999999
Q ss_pred HhCCC--CcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhcc
Q 027634 153 RLGES--RFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQQ 218 (221)
Q Consensus 153 ~L~~~--~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 218 (221)
.|+++ +|++|+++|+||+++++++.++.... ...++.||+|.+|++|++++|++++++++++..
T Consensus 138 ~L~~~~~~~l~Gd~~T~AD~~l~~~~~~~~~~~--~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~~~ 203 (205)
T PTZ00057 138 ILKKNHCNYFVGDNLTYADLAVFNLYDDIETKY--PNSLKNFPLLKAHNEFISNLPNIKNYISNRKES 203 (205)
T ss_pred HHHhCCCCeeeCCcccHHHHHHHHHHHHHHHhC--hhhhccChhHHHHHHHHHhChHHHHHHHhCCCc
Confidence 99753 89999999999999999988765321 234688999999999999999999999998754
No 15
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=2.3e-32 Score=204.03 Aligned_cols=185 Identities=20% Similarity=0.221 Sum_probs=143.3
Q ss_pred CCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCCC-CCcc
Q 027634 10 PPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEKG-NKGL 88 (221)
Q Consensus 10 ~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~-~~~l 88 (221)
.+.||+|+|++++|.++||+|+.+.+++.. ++++|+++||.|+||+|+++|.+|+||.+|++||++.++... +. +
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~---~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~-l 91 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKR---KPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPK-L 91 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCC---CCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCC-C
Confidence 467999999999999999999999999873 468999999999999999999999999999999999997531 23 5
Q ss_pred cCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhC-------------
Q 027634 89 FGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLG------------- 155 (221)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~------------- 155 (221)
.|.++..++....+...+ .. ++. ...+...+...+.+.+.|+.||+.|.
T Consensus 92 ~p~~~~~~~~~~~l~~~~--------~~-----~~~-----~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~ 153 (236)
T TIGR00862 92 SPKHPESNTAGLDIFAKF--------SA-----YIK-----NSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAE 153 (236)
T ss_pred CCCCHHHHHHHHHHHHHH--------HH-----HHH-----cCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 566665544321111110 00 011 12233344555668899999999986
Q ss_pred -----CCCcccCCCcchhhhcchhhhhHHhhc---cccccccccCchHHHHHHHHhcchhHHHHHhhhh
Q 027634 156 -----ESRFLAGDEFSLADLSHLPNAHYLVNA---TDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQK 216 (221)
Q Consensus 156 -----~~~~l~G~~~t~aD~~~~~~l~~~~~~---~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 216 (221)
+++|+.|+++|+|||++++.+.++... ..+....+++|+|.+|++++.++|+|++++...+
T Consensus 154 ~~~~~~~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~~ 222 (236)
T TIGR00862 154 DEKVSRRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDK 222 (236)
T ss_pred cccccCCCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCChH
Confidence 579999999999999999999998754 1223447889999999999999999999876554
No 16
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-32 Score=198.94 Aligned_cols=200 Identities=21% Similarity=0.217 Sum_probs=163.8
Q ss_pred CcceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCC-CCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhC
Q 027634 2 ATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAK-GDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENY 80 (221)
Q Consensus 2 ~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 80 (221)
|+.++|+|++..+.+..+|++++..|++|++.+++..+ |. ......|+|++|+|..||..|.||.||++||++++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~----~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~ 76 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWE----ELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKF 76 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchh----hhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999876 43 33334899999999999999999999999999999
Q ss_pred CCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHH-HHHHHHHHHHHHHHHHhC--CC
Q 027634 81 PEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIK-QNEEKLAKVLDVYEKRLG--ES 157 (221)
Q Consensus 81 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~--~~ 157 (221)
+ +.|+++.++++++.+.+...+........... .. .....+...+ .........++.+++.|. ++
T Consensus 77 g------l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~----~~--~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~s 144 (206)
T KOG1695|consen 77 G------LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYT----AP--EAGKSEEELDKLYLPAKPKYFKILEKILKKNKS 144 (206)
T ss_pred C------cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhh----hh--hhccchhhhhhhhccchHHHHHHHHHHHHhCCC
Confidence 8 99999999999999998766654442222221 11 1122222222 556677889999999997 45
Q ss_pred CcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhcc
Q 027634 158 RFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQQ 218 (221)
Q Consensus 158 ~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 218 (221)
+|++|+++|+||+.++..+..+... ........+|+|+++.+++.++|.++++++.++..
T Consensus 145 gflvGd~lT~aDl~i~e~l~~l~~~-~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~~t 204 (206)
T KOG1695|consen 145 GFLVGDKLTWADLVIAEHLDTLEEL-LDPSALDHFPKLKAFKERVSSIPNIKKYLESRPVT 204 (206)
T ss_pred CeeecCcccHHHHHHHHHHHHHHHh-cCchhhccChHHHHHHHHHhcCchHHHHHhcCCCC
Confidence 8999999999999999999998884 11355778999999999999999999999999865
No 17
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=3.7e-32 Score=202.67 Aligned_cols=181 Identities=24% Similarity=0.291 Sum_probs=138.2
Q ss_pred cCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCCCCCcc
Q 027634 9 GPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEKGNKGL 88 (221)
Q Consensus 9 ~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~~~~l 88 (221)
++..||+|+|++++|+++|++|+.+.|++. ++.++|+++||.|+||+|+++|.+|+||.+|++||+++++.. . +
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~--~-l 89 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLS---DKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDP--P-L 89 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcc---cCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCC--C-C
Confidence 456699999999999999999999999986 356799999999999999999999999999999999999854 3 4
Q ss_pred cCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhC--CCCcccCCCcc
Q 027634 89 FGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLG--ESRFLAGDEFS 166 (221)
Q Consensus 89 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t 166 (221)
.++.+++.++..+.. .... ... .... .+...+.+.+.|..+|+.|+ +++|++|+++|
T Consensus 90 --~~~~~~a~i~~~~~~-------~~~~-----~~~---~~~~----~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T 148 (213)
T PLN02378 90 --KTPAEFASVGSNIFG-------TFGT-----FLK---SKDS----NDGSEHALLVELEALENHLKSHDGPFIAGERVS 148 (213)
T ss_pred --CCHHHHHHHHHHHHH-------HHHH-----HHh---cCCh----hhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCc
Confidence 356667665543321 0111 111 1011 12234567788999999997 46999999999
Q ss_pred hhhhcchhhhhHHhhcc---ccccccccCchHHHHHHHHhcchhHHHHHhhhh
Q 027634 167 LADLSHLPNAHYLVNAT---DRGEILTSRDNVGRWWGEISNRDSWKKVVDMQK 216 (221)
Q Consensus 167 ~aD~~~~~~l~~~~~~~---~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 216 (221)
+||+++++.+.++.... ......+.+|+|.+|++++.+||++++++...+
T Consensus 149 ~ADi~l~~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~~~ 201 (213)
T PLN02378 149 AVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEK 201 (213)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCChH
Confidence 99999999988765321 111234679999999999999999998876553
No 18
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.98 E-value=2.2e-31 Score=203.01 Aligned_cols=178 Identities=25% Similarity=0.297 Sum_probs=137.3
Q ss_pred CCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCCCCCccc
Q 027634 10 PPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEKGNKGLF 89 (221)
Q Consensus 10 ~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~~~~l~ 89 (221)
...||+|+|++++|+++||+|+.+.+++. +++++|+++||.|+||+|+++|.+|+||.+|++||+++++.. . +
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~--~-L- 142 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDP--P-L- 142 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCC--C-C-
Confidence 34499999999999999999999999885 457899999999999999998999999999999999999865 3 4
Q ss_pred CCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC-CCcccCCCcchh
Q 027634 90 GTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGE-SRFLAGDEFSLA 168 (221)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~a 168 (221)
.++.+++.++.++... ... .+.. .... +...+.+.+.|..||++|++ ++|++|+++|+|
T Consensus 143 -~~~~era~i~~~l~~~-------~~~-----~~~~---~~~~----~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlA 202 (265)
T PLN02817 143 -ATPPEKASVGSKIFST-------FIG-----FLKS---KDPG----DGTEQALLDELTSFDDYIKENGPFINGEKISAA 202 (265)
T ss_pred -CCHHHHHHHHHHHHHH-------HHH-----Hhcc---CCcc----hHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHH
Confidence 3567788776644210 000 1111 1111 12235677789999999974 699999999999
Q ss_pred hhcchhhhhHHhhc-c--ccccccccCchHHHHHHHHhcchhHHHHHhh
Q 027634 169 DLSHLPNAHYLVNA-T--DRGEILTSRDNVGRWWGEISNRDSWKKVVDM 214 (221)
Q Consensus 169 D~~~~~~l~~~~~~-~--~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 214 (221)
||++++.+.++... . .+....+.+|+|.+|++++.++|+|++++..
T Consensus 203 Di~l~p~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~~ 251 (265)
T PLN02817 203 DLSLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRAL 251 (265)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCCC
Confidence 99999999877543 1 1112346799999999999999999998764
No 19
>PRK10387 glutaredoxin 2; Provisional
Probab=99.98 E-value=1.8e-31 Score=198.99 Aligned_cols=189 Identities=16% Similarity=0.149 Sum_probs=137.5
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE-cCCeeEeehHHHHHHHHHhCCCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ-DEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
|+||+++.||+|+|++++|+++||+|+.+.++... .. ...+.||.|+||+|+ ++|.+|+||.+|++||++++++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~~--~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--EA--TPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--hh--hHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 58999999999999999999999999998875432 11 125689999999995 78899999999999999999864
Q ss_pred CCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccC--------------CCCCCh---HHHHHHHHHHHHH
Q 027634 84 GNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRM--------------NIKQDE---GVIKQNEEKLAKV 146 (221)
Q Consensus 84 ~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~---~~~~~~~~~~~~~ 146 (221)
+++ . .+++.+++|+.+....+.......+......... .....+ ...+...+.+.+.
T Consensus 77 ----~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (210)
T PRK10387 77 ----LLT-G-KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINAD 150 (210)
T ss_pred ----cCC-C-cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHH
Confidence 443 1 2567788888766544332211111000000000 000000 0113567789999
Q ss_pred HHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhH
Q 027634 147 LDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSW 208 (221)
Q Consensus 147 l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 208 (221)
|+.+|++|++ +|++|+++|+||+++++.+.++..... .+.+|+|.+|++|+.+||++
T Consensus 151 l~~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~~----~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 151 LRALDPLIVK-PNAVNGELSTDDIHLFPILRNLTLVKG----IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHHHHHhcC-ccccCCCCCHHHHHHHHHHhcceeecC----CCCCHHHHHHHHHHHHHhCC
Confidence 9999999987 999999999999999999988876432 23469999999999999975
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=3e-29 Score=186.40 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=131.1
Q ss_pred EEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE-cCCeeEeehHHHHHHHHHhCCCCC
Q 027634 6 KVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ-DEKISLLESRAICRYVCENYPEKG 84 (221)
Q Consensus 6 ~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~~~ 84 (221)
+||++..||+|+|+|++|.++|++|+.+.+.... . ....+.||.|++|+|+ ++|.+++||.+|++||+++++..
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~--~--~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~- 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDD--E--ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEP- 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCc--c--hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCc-
Confidence 6899999999999999999999999987664322 1 2347889999999998 88899999999999999999754
Q ss_pred CCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHH------------Hhhc--ccCCCCCC---hHHHHHHHHHHHHHH
Q 027634 85 NKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQ------------LALA--PRMNIKQD---EGVIKQNEEKLAKVL 147 (221)
Q Consensus 85 ~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~--~~~~~~~~---~~~~~~~~~~~~~~l 147 (221)
+++. ..++++.+|+.+....+.......+.. ..+. +..+.... ....++..+.+.+.|
T Consensus 76 ---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 150 (209)
T TIGR02182 76 ---LLTG--KVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADL 150 (209)
T ss_pred ---cCCC--CChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHH
Confidence 3332 235566777765444332211110000 0000 00000000 000134567789999
Q ss_pred HHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCc-hHHHHHHHHhcchhH
Q 027634 148 DVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRD-NVGRWWGEISNRDSW 208 (221)
Q Consensus 148 ~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~ 208 (221)
+.+|++|++++|+. +++|+|||++++.+.++...+. . .+| +|.+|++|+.+++++
T Consensus 151 ~~le~~L~~~~~l~-g~~TiADi~l~~~l~~~~~~~~----~-~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 151 EELDKLIDGPNAVN-GELSEDDILVFPLLRNLTLVAG----I-NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHHHHhCccccC-CCCCHHHHHHHHHhcCeeeecC----C-CCChHHHHHHHHHHHHhCC
Confidence 99999999999995 4799999999999987665432 1 256 999999999999864
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.96 E-value=1e-28 Score=179.13 Aligned_cols=209 Identities=25% Similarity=0.363 Sum_probs=153.1
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCC
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
.+.||+++.|-.++|||++++++||.|+...|++..++++.+||...||.|.|||+++++.+|.++.-|+.|+++++-+.
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCcccCCC-hhHHHHHHH---HHH------HHhc-----cC-----CchhH---HHHHHH---h--hc----c------
Q 027634 84 GNKGLFGTN-PLAKASIDQ---WLE------AEGQ-----SF-----NPPSS---ALVFQL---A--LA----P------ 125 (221)
Q Consensus 84 ~~~~l~p~~-~~~~~~~~~---~~~------~~~~-----~l-----~~~~~---~~~~~~---~--~~----~------ 125 (221)
+.|.|.- ..+..++.. .++ +..+ .+ .+... ....+. . .. |
T Consensus 106 --r~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay 183 (325)
T KOG4420|consen 106 --RVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAY 183 (325)
T ss_pred --ccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHH
Confidence 3366642 222222111 111 0000 00 00000 000000 0 00 0
Q ss_pred ---------cCCCCCChHHHHHHHHHHHHHHHHHHHHhCC----CCcccCCCcchhhhcchhhhhHHhhccccccccc--
Q 027634 126 ---------RMNIKQDEGVIKQNEEKLAKVLDVYEKRLGE----SRFLAGDEFSLADLSHLPNAHYLVNATDRGEILT-- 190 (221)
Q Consensus 126 ---------~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~----~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~-- 190 (221)
...+..+....++.+..+...|...|..|.+ .+|++|+++|+||+.+...|+++...+.....+.
T Consensus 184 ~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~g 263 (325)
T KOG4420|consen 184 LAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDG 263 (325)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccC
Confidence 0001122334556666777888888888876 4899999999999999999999998876433343
Q ss_pred cCchHHHHHHHHhcchhHHHHHhh
Q 027634 191 SRDNVGRWWGEISNRDSWKKVVDM 214 (221)
Q Consensus 191 ~~p~l~~~~~~~~~~p~~~~~~~~ 214 (221)
..|+|.+|++|+..|++|++++..
T Consensus 264 srpnle~Yf~rvrrR~sf~kvlg~ 287 (325)
T KOG4420|consen 264 SRPNLESYFERVRRRFSFRKVLGD 287 (325)
T ss_pred CCccHHHHHHHHHhhhHHHHhhhh
Confidence 689999999999999999999764
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.92 E-value=4e-24 Score=181.63 Aligned_cols=156 Identities=18% Similarity=0.271 Sum_probs=128.2
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE-cCCeeEeehHHHHHHHHHhCCCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ-DEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
++||+.+.|+ +.++.++|++.|++|+.+. .+|.|+||+|+ ++|.+|+||.||++||++.++..
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 8999999774 6789999999999999864 16899999999 57799999999999999999765
Q ss_pred CCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Q 027634 84 GNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGD 163 (221)
Q Consensus 84 ~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 163 (221)
. |+|.++.+++++++|+.+...... . ..+...++.||++|++++|++|+
T Consensus 67 --~-L~p~d~~erAqV~qWL~~~~~~~~---------------------~-------~~l~~~L~~LE~~L~~rtYLvGd 115 (722)
T PLN02907 67 --G-FYGQDAFESSQVDEWLDYAPTFSS---------------------G-------SEFENACEYVDGYLASRTFLVGY 115 (722)
T ss_pred --C-CCCCCHHHHHHHHHHHHHHhhccc---------------------H-------HHHHHHHHHHHHHhccCCeecCC
Confidence 5 999999999999999987643110 0 13556789999999999999999
Q ss_pred CcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchh
Q 027634 164 EFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDS 207 (221)
Q Consensus 164 ~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 207 (221)
++|+|||++++.+...............+|+|.+|++++.++|+
T Consensus 116 ~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 116 SLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred CCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCC
Confidence 99999999999886652111111235789999999999999999
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.2e-21 Score=136.52 Aligned_cols=182 Identities=25% Similarity=0.306 Sum_probs=140.0
Q ss_pred CCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCCCCCccc
Q 027634 10 PPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEKGNKGLF 89 (221)
Q Consensus 10 ~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~~~~l~ 89 (221)
...||+|+++.+.|.++|++|+++.|++. .++++|+.+.|.+++|+|..++..++||..|-++|++.++.+ -+
T Consensus 18 ~Gdcpf~qr~~m~L~~k~~~f~vttVd~~---~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p----~~ 90 (221)
T KOG1422|consen 18 LGDCPFCQRLFMTLELKGVPFKVTTVDLS---RKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPP----KL 90 (221)
T ss_pred CCCChhHHHHHHHHHHcCCCceEEEeecC---CCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCC----CC
Confidence 34599999999999999999999999996 467899999999999999999999999999999999999976 33
Q ss_pred CC--ChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC---CCcccCCC
Q 027634 90 GT--NPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGE---SRFLAGDE 164 (221)
Q Consensus 90 p~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~ 164 (221)
+. .++.......+... .... +. ...++..+...+.+.+.|..|+.+|+. ++|+.|++
T Consensus 91 ~~~~~~E~asag~diF~k--------F~~f----i~------ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~ 152 (221)
T KOG1422|consen 91 PTLAPPESASAGSDIFAK--------FSAF----IK------KSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDK 152 (221)
T ss_pred cccCCHHHHhhHHHHHHH--------HHHH----Hh------CchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCe
Confidence 43 32222221111111 0111 10 223334445556678888999999985 69999999
Q ss_pred cchhhhcchhhhhHHhhcc---ccccccccCchHHHHHHHHhcchhHHHHHhhhh
Q 027634 165 FSLADLSHLPNAHYLVNAT---DRGEILTSRDNVGRWWGEISNRDSWKKVVDMQK 216 (221)
Q Consensus 165 ~t~aD~~~~~~l~~~~~~~---~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 216 (221)
+|+|||.+++-|+-+..+. ........++.+++|+..+.++.+|..+....+
T Consensus 153 lt~aDcsLlPKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d~ 207 (221)
T KOG1422|consen 153 LTLADCSLLPKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPADQ 207 (221)
T ss_pred eeeehhhhchhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCchHH
Confidence 9999999999999887662 233456789999999999999999988766544
No 24
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.86 E-value=1.3e-21 Score=120.68 Aligned_cols=73 Identities=19% Similarity=0.357 Sum_probs=69.0
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
++||+++.|++|+|+|++|+++|++|+.+.+++..++++.++|.++||.|+||+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999988777778899999999999999999999999999999985
No 25
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.85 E-value=7.5e-21 Score=118.10 Aligned_cols=74 Identities=35% Similarity=0.538 Sum_probs=69.7
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCE 78 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 78 (221)
++||+++.||+|++++++|+++|++|+.+.+++..+++..++|.+.||.|++|+|+++|.+++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999999877777789999999999999999999999999999999974
No 26
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.84 E-value=2.2e-20 Score=116.54 Aligned_cols=76 Identities=34% Similarity=0.593 Sum_probs=70.8
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENY 80 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 80 (221)
++||+++.|++|++++++|+++|++|+.+.++...++...+++.+.||.|++|+|+++|.+++||.||++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 4899999999999999999999999999999987766667899999999999999999999999999999999874
No 27
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.83 E-value=2.5e-20 Score=116.36 Aligned_cols=75 Identities=48% Similarity=0.935 Sum_probs=70.2
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHh
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCEN 79 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 79 (221)
++||+++.||+|+++|++|+++|++|+.+.+++..++++.++|.+.||.|++|+|+++|.+++||.||++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 699999999999999999999999999999998776667789999999999999999999999999999999863
No 28
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.83 E-value=1.9e-20 Score=116.37 Aligned_cols=74 Identities=36% Similarity=0.636 Sum_probs=69.1
Q ss_pred EecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCC
Q 027634 7 VYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 7 L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
||+++.||+|+|+|++|+++||+|+.+.++... +.+++.+.||.++||+|+++|.+++||.+|++||++++++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999998653 37899999999999999999999999999999999999854
No 29
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.83 E-value=7.2e-20 Score=115.62 Aligned_cols=76 Identities=33% Similarity=0.625 Sum_probs=70.5
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC---CeeEeehHHHHHHHHHhCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE---KISLLESRAICRYVCENYP 81 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~---~~~l~es~aI~~yL~~~~~ 81 (221)
++||+++. |+|++++++|+++|++|+.+.+++..+++..++|.+.||.+++|+|+++ |.+|+||.+|++||+++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 69999986 9999999999999999999999987666778899999999999999987 7899999999999999986
No 30
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=6.3e-20 Score=113.63 Aligned_cols=73 Identities=32% Similarity=0.589 Sum_probs=68.5
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
++||+++.||+|++++++|+++|++|+.+.+++..++++.++|.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999987666778999999999999999999999999999999984
No 31
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.82 E-value=1.1e-19 Score=112.58 Aligned_cols=73 Identities=30% Similarity=0.548 Sum_probs=67.6
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENY 80 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 80 (221)
|+||+.+.||+|++++++|+++|++|+.+.++.. +..+++++.||.|++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999998865 456899999999999999999999999999999999874
No 32
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.81 E-value=1.2e-19 Score=112.32 Aligned_cols=73 Identities=32% Similarity=0.510 Sum_probs=67.3
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
++||+++.|+++++++++|+++|++|+.+.++...++.+.++|.+.||.|++|+|+++|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 4899999999999999999999999999999876555667899999999999999999999999999999984
No 33
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.81 E-value=1.4e-19 Score=114.59 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=65.0
Q ss_pred CCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCC
Q 027634 11 PLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 11 ~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
..||+|+|+|++|+++||+|+.+.+++. +++++|+++||.|++|+|+++|.+|+||.+|++||++.++..
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 5699999999999999999999999986 456899999999999999999999999999999999998754
No 34
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.81 E-value=2.6e-19 Score=111.94 Aligned_cols=76 Identities=32% Similarity=0.465 Sum_probs=69.5
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC-CeeEeehHHHHHHHHHhCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE-KISLLESRAICRYVCENYP 81 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~aI~~yL~~~~~ 81 (221)
++||+++.+ +++++|++|+++|++|+.+.++..+++++.++|.+.||.+++|+|+++ |.+++||.+|++||+++++
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 489999976 689999999999999999999988777778999999999999999976 7999999999999999875
No 35
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.81 E-value=1.5e-19 Score=112.47 Aligned_cols=73 Identities=37% Similarity=0.575 Sum_probs=64.0
Q ss_pred EEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCC-CCCCeEEcC-CeeEeehHHHHHHHHH
Q 027634 6 KVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPF-GQVPAFQDE-KISLLESRAICRYVCE 78 (221)
Q Consensus 6 ~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~-~~~l~es~aI~~yL~~ 78 (221)
+|++++..++++++|++|+++|++|+.+.+++..++++.++|.+.||. |++|+|+++ |.+|+||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 445555555999999999999999999999998888778999999999 999999999 9999999999999985
No 36
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.80 E-value=2.4e-19 Score=111.39 Aligned_cols=72 Identities=31% Similarity=0.577 Sum_probs=66.8
Q ss_pred EEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEc-CCeeEeehHHHHHHHHH
Q 027634 6 KVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQD-EKISLLESRAICRYVCE 78 (221)
Q Consensus 6 ~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~~ 78 (221)
+||+++.||+|++++++|+++|++|+.+.++...+ ++.++|.++||.|++|+|++ +|.+|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999999998654 67789999999999999996 57899999999999986
No 37
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.80 E-value=2.7e-19 Score=110.99 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=66.8
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCC-CCCCeEEcCCeeEeehHHHHHHHHHhC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPF-GQVPAFQDEKISLLESRAICRYVCENY 80 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 80 (221)
|+||+++.||+|+|+|++|+++|++|+.+.++.. .+.++|.+.||. |++|+|+++|.+++||.+|++||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 5899999999999999999999999999988775 456889999995 999999999999999999999999864
No 38
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.80 E-value=1.7e-19 Score=112.56 Aligned_cols=74 Identities=26% Similarity=0.342 Sum_probs=65.2
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEc--CCeeEeehHHHHHHHHHhC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQD--EKISLLESRAICRYVCENY 80 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 80 (221)
++||+++.||+|+|++++|.++||+|+.+.++. +++..+++.+.||.|++|+|++ +|.+++||.+|++||++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~--~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPK--GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 699999999999999999999999999987752 3334578999999999999996 3589999999999999875
No 39
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.80 E-value=2.7e-19 Score=110.76 Aligned_cols=73 Identities=27% Similarity=0.446 Sum_probs=68.4
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
|+||++..|++|+++|++|+++|++|+.+.+++..++++.++|.+.||.+++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999987766677899999999999999999999999999999985
No 40
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.80 E-value=2.4e-19 Score=111.25 Aligned_cols=73 Identities=36% Similarity=0.704 Sum_probs=67.2
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE-cCCeeEeehHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ-DEKISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 77 (221)
++||+++.||+|+|+|++|.++|++|+.+.++...+++..+++.+.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 48999999999999999999999999999999876666678899999999999999 57789999999999985
No 41
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.80 E-value=4e-19 Score=110.90 Aligned_cols=76 Identities=30% Similarity=0.592 Sum_probs=69.4
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYP 81 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~ 81 (221)
++||+++. +++++++++|+++|++|+.+.++...++++.++|.+.||.+++|+|+++|.+++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 48999886 68999999999999999999999876666788999999999999999999999999999999999874
No 42
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.80 E-value=1.3e-19 Score=111.92 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=66.0
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHh
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCEN 79 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 79 (221)
+++||+++.|++|+++|++|+++|++|+.+.++... ..+++.+.||.|++|+|+++|.+++||.||++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~---~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEE---WQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHH---hhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 479999999999999999999999999999998742 3457889999999999999999999999999999863
No 43
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.78 E-value=4.1e-19 Score=109.55 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=64.7
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCE 78 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 78 (221)
++||+++.|++|+++|++|+++|++|+.+.++...+. .+++.+.||.+++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~--~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWP--ELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhh--hhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999999999875432 34588899999999999999999999999999974
No 44
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.78 E-value=1.2e-18 Score=107.09 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=62.9
Q ss_pred EEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC-CeeEeehHHHHHHH
Q 027634 6 KVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE-KISLLESRAICRYV 76 (221)
Q Consensus 6 ~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~aI~~yL 76 (221)
+||+++.||+|+|++++|+++|++|+.+.+++.. ..++|.+.||.|+||+|+++ |..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~---~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN---KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC---CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 7999999999999999999999999999998853 45789999999999999975 89999999999996
No 45
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.76 E-value=2.7e-18 Score=108.27 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=64.4
Q ss_pred EEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCC-Chhhhh-----hCCCCCCCeEEcCCeeEeehHHHHHHHHHh
Q 027634 6 KVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHK-KPDFLK-----IQPFGQVPAFQDEKISLLESRAICRYVCEN 79 (221)
Q Consensus 6 ~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~-~~~~~~-----~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 79 (221)
+|||++.++.|+++|++|+++||+|+.+.+++.++++. .+++.. .+|.|+||+|+++|.+|+||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 79999999999999999999999999999998765433 234432 239999999999999999999999999986
Q ss_pred C
Q 027634 80 Y 80 (221)
Q Consensus 80 ~ 80 (221)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 46
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.76 E-value=2.6e-18 Score=105.62 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=61.0
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC-CeeEeehHHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE-KISLLESRAICRYVCE 78 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~aI~~yL~~ 78 (221)
|+||+++.||+|+|+|++|+++|++|+.+.++... .....+.+|.+++|+|+++ |.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 48999999999999999999999999999887532 2344578999999999976 7999999999999974
No 47
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.75 E-value=2.8e-17 Score=120.70 Aligned_cols=179 Identities=14% Similarity=0.135 Sum_probs=124.3
Q ss_pred CCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCCCCCcccC
Q 027634 11 PLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEKGNKGLFG 90 (221)
Q Consensus 11 ~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~~~~l~p 90 (221)
+.||+|+++-.+|+..+|||+.+.-.+ ...++.|++|.++-||..+.||.-|..+|.++++-. . .+
T Consensus 59 nLSPfClKvEt~lR~~~IpYE~~~~~~----------~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~--~-~L- 124 (281)
T KOG4244|consen 59 NLSPFCLKVETFLRAYDIPYEIVDCSL----------KRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIP--D-DL- 124 (281)
T ss_pred CCChHHHHHHHHHHHhCCCceeccccc----------eeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCC--C-CC-
Confidence 349999999999999999999885432 235789999999999999999999999999999855 2 12
Q ss_pred CChhHHHHHHHHHHHHhccCCc----------------------------hhHHHHHHHhhccc----CCCCCChHHHHH
Q 027634 91 TNPLAKASIDQWLEAEGQSFNP----------------------------PSSALVFQLALAPR----MNIKQDEGVIKQ 138 (221)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~----------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~ 138 (221)
.+++++....+....+..+.. .....++...+... ....-..-..++
T Consensus 125 -~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~~~E 203 (281)
T KOG4244|consen 125 -SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFESAE 203 (281)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcCHHH
Confidence 344555555544443322110 11111111111110 000000011334
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhcccc----ccccccCchHHHHHHHHhcc
Q 027634 139 NEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDR----GEILTSRDNVGRWWGEISNR 205 (221)
Q Consensus 139 ~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~----~~~~~~~p~l~~~~~~~~~~ 205 (221)
..+.+.+-|+.++..|++.+||+|+++|-+|+.+++.|..+.. +.+ ....+++|+|.+|++|+.+.
T Consensus 204 i~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y-P~~~~i~d~le~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 204 IDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY-PFRSHISDLLEGDFPNLLEYCERIRKE 273 (281)
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec-cCCCcHHHHHhhhchHHHHHHHHHHHH
Confidence 6677889999999999999999999999999999999998766 221 12345799999999999864
No 48
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=5.5e-18 Score=104.79 Aligned_cols=70 Identities=29% Similarity=0.497 Sum_probs=63.6
Q ss_pred eEEecCCCChhhHHHHHHHHh--cCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE-cCCeeEeehHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLE--KDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ-DEKISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~--~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~ 77 (221)
++||+++.||+|+|+|++|++ +|++|+.+.++.. .+.++|.+.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 489999999999999999999 8999999998863 4568899999999999998 57799999999999985
No 49
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5e-17 Score=112.13 Aligned_cols=189 Identities=17% Similarity=0.156 Sum_probs=128.8
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE-cCCeeEeehHHHHHHHHHhCCCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ-DEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~-~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
|+||-+.+||||-|+|++.-.+|||++.....-++.+ .-..+....+||+|+ ++|.-+.||.+|.+|+++..+.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~----Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE----TPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCccc----ChhhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 4899999999999999999999999999988655422 112345566899999 77899999999999999999855
Q ss_pred CCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhccc--------------CCC---CCChHHHHHHHHHHHHH
Q 027634 84 GNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPR--------------MNI---KQDEGVIKQNEEKLAKV 146 (221)
Q Consensus 84 ~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~ 146 (221)
+.-. .-+..+..|+..+..........-+....+... ... ...-.......+++...
T Consensus 77 ----~lt~--~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~d 150 (215)
T COG2999 77 ----LLTG--KVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQAD 150 (215)
T ss_pred ----hhcc--CcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHH
Confidence 3322 224456666665444332222111111111000 000 00111244567788889
Q ss_pred HHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhH
Q 027634 147 LDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSW 208 (221)
Q Consensus 147 l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 208 (221)
|+.++.++.+..-+- ..+++-||.+|+.|+.+..+.. ..--.++..|.+++++...+
T Consensus 151 l~~l~~Li~~~s~~n-~~l~~ddi~vFplLRnlt~v~g----i~wps~v~dy~~~msektqV 207 (215)
T COG2999 151 LRALDKLIVGPSAVN-GELSEDDILVFPLLRNLTLVAG----IQWPSRVADYRDNMSEKTQV 207 (215)
T ss_pred HHHHHHHhcCcchhc-cccchhhhhhhHHhccceeccc----CCCcHHHHHHHHHHHHhhCc
Confidence 999999987755444 4799999999999998877754 23234899999999876544
No 50
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.75 E-value=6.9e-18 Score=105.73 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=62.7
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhh-----CCCCCCCeEEcCCeeEeehHHHHHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKI-----QPFGQVPAFQDEKISLLESRAICRYVCE 78 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~-----~p~~~vP~l~~~~~~l~es~aI~~yL~~ 78 (221)
+++||+++.|+.+++++++|+++|++|+.+.++.. +++.+. +|.|++|+|+++|.+|+||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 46899999999999999999999999999998753 222222 4699999999999999999999999999
Q ss_pred hCC
Q 027634 79 NYP 81 (221)
Q Consensus 79 ~~~ 81 (221)
+++
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 987
No 51
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.75 E-value=5.6e-18 Score=107.63 Aligned_cols=70 Identities=23% Similarity=0.308 Sum_probs=61.9
Q ss_pred CCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC-CeeEeehHHHHHHHHHhCC
Q 027634 11 PLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE-KISLLESRAICRYVCENYP 81 (221)
Q Consensus 11 ~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~aI~~yL~~~~~ 81 (221)
+.||+|+|+|++|.++||+|+.+.++...++...+++ +.||.+++|+|+++ |.+++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6799999999999999999999999876554444555 78999999999988 8999999999999999874
No 52
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.75 E-value=8e-18 Score=107.94 Aligned_cols=71 Identities=27% Similarity=0.457 Sum_probs=64.9
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC-CeeEeehHHHHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE-KISLLESRAICRYVC 77 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~aI~~yL~ 77 (221)
.++||+++.||+|++++++|+++|++|+.+.++... ..+++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 589999999999999999999999999999998753 34678999999999999976 799999999999985
No 53
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.74 E-value=1.1e-17 Score=102.22 Aligned_cols=68 Identities=34% Similarity=0.567 Sum_probs=57.9
Q ss_pred CChhhHHHHHHHHhcCCcceEEEecc-CCCCCCChhhhhhCCCCCCCeEEc-CCeeEeehHHHHHHHHHh
Q 027634 12 LSTAVCRVVACLLEKDVEFQLISLNM-AKGDHKKPDFLKIQPFGQVPAFQD-EKISLLESRAICRYVCEN 79 (221)
Q Consensus 12 ~s~~~~~~~~~L~~~gi~~~~~~v~~-~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL~~~ 79 (221)
.|||++|++++|+++|++|+...+.. ..+..+.++|.+.||.|+||+|++ +|.++.||.+|++||++.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 49999999999999999999988844 334456789999999999999996 679999999999999873
No 54
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.74 E-value=3.8e-17 Score=110.64 Aligned_cols=117 Identities=51% Similarity=0.959 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchh
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLP 174 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 174 (221)
+++++.+|+.+....+.+..........+.+..+...+++..+...+.+.+.++.||++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 57889999999888887766554443334333233456667777889999999999999998999999999999999999
Q ss_pred hhhHHhhccccccccccCchHHHHHHHHhcchhHHHHH
Q 027634 175 NAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVV 212 (221)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 212 (221)
.+.++...+. ...++.+|+|.+|++++.++|++++++
T Consensus 82 ~~~~~~~~~~-~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMATPF-AKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHccc-hhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 9988764322 223568999999999999999998864
No 55
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.72 E-value=2.8e-17 Score=102.02 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=60.8
Q ss_pred eEEecCC-------CChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 5 VKVYGPP-------LSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~-------~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
++||+++ .||+|+|++++|+++|++|+.+.++.. +.||.|++|+|+++|.+++||.+|++||+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA----------KRSPKGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc----------cCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 5999988 689999999999999999999887542 57999999999999999999999999999
Q ss_pred HhCC
Q 027634 78 ENYP 81 (221)
Q Consensus 78 ~~~~ 81 (221)
++++
T Consensus 72 ~~~~ 75 (75)
T cd03080 72 EKYG 75 (75)
T ss_pred HHcC
Confidence 9875
No 56
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.72 E-value=3.4e-17 Score=102.33 Aligned_cols=73 Identities=18% Similarity=0.326 Sum_probs=62.8
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC----CeeEeehHHHHHHHHHh
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE----KISLLESRAICRYVCEN 79 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~----~~~l~es~aI~~yL~~~ 79 (221)
+++||+++.||+|++++++|.++||+|+.+.++... .++ ...||.+++|+|+++ |.+++||.+|++||++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 479999999999999999999999999999886532 123 356999999999955 68999999999999987
Q ss_pred CC
Q 027634 80 YP 81 (221)
Q Consensus 80 ~~ 81 (221)
.+
T Consensus 76 ~~ 77 (77)
T cd03040 76 LG 77 (77)
T ss_pred cC
Confidence 53
No 57
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.71 E-value=4.6e-17 Score=100.43 Aligned_cols=68 Identities=25% Similarity=0.392 Sum_probs=61.7
Q ss_pred cCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 9 GPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 9 ~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
.+..|+++++++++|+++|++|+.+.++...+ ...++|.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 56779999999999999999999999988664 356889999999999999999999999999999984
No 58
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.71 E-value=1.5e-16 Score=106.91 Aligned_cols=112 Identities=25% Similarity=0.348 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchh
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLP 174 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 174 (221)
+++++++|+.+.+..+.+..........+.+ ..++...+.....+.+.+..+|+.|++++|++|+++|+|||++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 76 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAP----EKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFP 76 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCC----CCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHH
Confidence 4788999999999999887665433332222 344556777888999999999999998999999999999999999
Q ss_pred hhhHHhhccccccccccCchHHHHHHHHhcchhHHHHH
Q 027634 175 NAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVV 212 (221)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 212 (221)
.+.+...... .....+|++.+|++++.++|++++++
T Consensus 77 ~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 77 WVRRLEWIGI--DDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHHhccc--cchhhchHHHHHHHHHhhCHHHHHhc
Confidence 9988865543 23677999999999999999999875
No 59
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.70 E-value=2.2e-16 Score=116.69 Aligned_cols=195 Identities=15% Similarity=0.235 Sum_probs=123.8
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCC
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
+++||.+..||||-++|.+|.+.||+|++++|+..... + .+-+.+.+||+|...|..+.||..|+.-|+.-.++.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~----e-Ik~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~ 164 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQ----E-IKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDK 164 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhh----h-ccccccccccEEEeccceechhHHHHHHHHHHhccC
Confidence 58999999999999999999999999999999875421 1 122568899999987878999999998885443222
Q ss_pred CC-----CcccC------------------------C-----ChhHHHHHHHHHHHHhccCCchhHHHHHHH--------
Q 027634 84 GN-----KGLFG------------------------T-----NPLAKASIDQWLEAEGQSFNPPSSALVFQL-------- 121 (221)
Q Consensus 84 ~~-----~~l~p------------------------~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------- 121 (221)
+. -.+|| + +.+.+..-+.|-.|+++.|...+...++..
T Consensus 165 ~q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletF 244 (370)
T KOG3029|consen 165 RQDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETF 244 (370)
T ss_pred CCCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHH
Confidence 10 00222 1 111223345555665555543222221111
Q ss_pred -hhcccCC----CC----------------------CChHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCcchhhhcch
Q 027634 122 -ALAPRMN----IK----------------------QDEGVIKQNEEKLAKVLDVYEKRL-GESRFLAGDEFSLADLSHL 173 (221)
Q Consensus 122 -~~~~~~~----~~----------------------~~~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~~~ 173 (221)
++..... .. ........-++.+.+.++.+-..| .+++|+.|++|++||+.++
T Consensus 245 ewf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvf 324 (370)
T KOG3029|consen 245 EWFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVF 324 (370)
T ss_pred HHHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhh
Confidence 0100000 00 000011113344556666666666 4579999999999999999
Q ss_pred hhhhHHhhccccccccccCchHHHHHHHHhc
Q 027634 174 PNAHYLVNATDRGEILTSRDNVGRWWGEISN 204 (221)
Q Consensus 174 ~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 204 (221)
++|..+..+.. +...-+..++.+|+-++++
T Consensus 325 Gvl~sm~gc~a-fkd~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 325 GVLRSMEGCQA-FKDCLQNTSIGEWYYRMEA 354 (370)
T ss_pred hhhhHhhhhhH-HHHHHhcchHHHHHHHHHH
Confidence 99999888754 2234456899999999875
No 60
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.70 E-value=6e-17 Score=108.97 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchh
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLP 174 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 174 (221)
+++++++|+.+..+.+.+............+ .....+...+...+.+.+.++.+|+.|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWAT--DEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHH
Confidence 5789999999998888876544332211110 11223455677888999999999999998899999999999999999
Q ss_pred hhhHHhhccccccccccCchHHHHHHHHhcchhHHHHH
Q 027634 175 NAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVV 212 (221)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 212 (221)
.+.++..... ..+.+|+|.+|++++.++|+|++++
T Consensus 80 ~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 80 VLRWAPGVGL---DLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHhhcCC---ChhhChHHHHHHHHHHhCHHhHhhC
Confidence 9987755432 2467999999999999999999864
No 61
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.70 E-value=6.4e-17 Score=108.84 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhc
Q 027634 92 NPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLS 171 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~ 171 (221)
++..++++++|..+.+..+.+......+.... + .+..+...+.+.+.+..+|++|++++|++|+++|+|||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~ 74 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRY----P----EESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWA 74 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhc----C----cccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHH
Confidence 67889999999999888776655554332211 1 123667788999999999999999999999999999999
Q ss_pred chhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHH
Q 027634 172 HLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKV 211 (221)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 211 (221)
+++.+.++..........+.+|+|.+|++++.++|+|+++
T Consensus 75 l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 75 IFPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 9998876654321112358899999999999999999986
No 62
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.8e-16 Score=115.89 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=146.1
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCc--ceEEEec--cCC-CCCCChh------------------hhhhCC----CCCC
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVE--FQLISLN--MAK-GDHKKPD------------------FLKIQP----FGQV 56 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~--~~~~~v~--~~~-~~~~~~~------------------~~~~~p----~~~v 56 (221)
.+.||..-.||+++|..++=+.+|++ .....|+ +.. +-...++ |....| .-+|
T Consensus 51 RYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTV 130 (324)
T COG0435 51 RYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTV 130 (324)
T ss_pred eEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeE
Confidence 58899999999999999999999985 1222222 111 1011111 111123 2359
Q ss_pred CeEEcCC---eeEeehHHHHHHHHHhCCCC---CCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCC
Q 027634 57 PAFQDEK---ISLLESRAICRYVCENYPEK---GNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIK 130 (221)
Q Consensus 57 P~l~~~~---~~l~es~aI~~yL~~~~~~~---~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 130 (221)
|||.+.. .+--||..|++-+...+.+- ... |||.. .+.+++.+..++.+.+...+... +-.
T Consensus 131 PVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~d-lyP~~--Lr~eId~~n~~Iy~~vNNGVYk~----------GFA 197 (324)
T COG0435 131 PVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVD-LYPEA--LRTEIDELNKWIYDTVNNGVYKA----------GFA 197 (324)
T ss_pred EEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccc-cCCHH--HHHHHHHHHhhhcccccCceeee----------ccc
Confidence 9999765 55679999999887665432 224 88875 57889999999888776654443 346
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhcccc-----ccccccCchHHHHHHHHhcc
Q 027634 131 QDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDR-----GEILTSRDNVGRWWGEISNR 205 (221)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~-----~~~~~~~p~l~~~~~~~~~~ 205 (221)
..+++-++..+.+-..|+.||..|+++.|++|+++|-||+-+++.|.++..+..+ ......||+|..|...+-+.
T Consensus 198 ~tq~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~ 277 (324)
T COG0435 198 TTQEAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQL 277 (324)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcC
Confidence 6778888999999999999999999999999999999999999999998776332 12245699999999999999
Q ss_pred hhHHHHHh
Q 027634 206 DSWKKVVD 213 (221)
Q Consensus 206 p~~~~~~~ 213 (221)
|.|.+++.
T Consensus 278 pg~~~T~d 285 (324)
T COG0435 278 PGFAETVD 285 (324)
T ss_pred cccccccc
Confidence 99988765
No 63
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.67 E-value=1e-15 Score=102.24 Aligned_cols=109 Identities=23% Similarity=0.421 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchh
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLP 174 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 174 (221)
+++++++|+.+..+.+.+.....+......+ ....++...+...+.+.+.|+.+|++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTP--PEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCC--cccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHH
Confidence 4788999999998888887655433322211 23345566778889999999999999998999999999999999998
Q ss_pred hhhHHhhccccccccccCchHHHHHHHHhcchhH
Q 027634 175 NAHYLVNATDRGEILTSRDNVGRWWGEISNRDSW 208 (221)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 208 (221)
++....... .....+|+|.+|++++.++|+|
T Consensus 80 ~~~~~~~~~---~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 80 SAYRWFELP---IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHcc---cccccCchHHHHHHHHHhCCCC
Confidence 885443332 2367899999999999999985
No 64
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.67 E-value=9e-16 Score=104.38 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhC--CCCcccCCCcchhhhc
Q 027634 94 LAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLG--ESRFLAGDEFSLADLS 171 (221)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~ 171 (221)
.+++++++|+.++.+.+.+............. .+ ...+...+...+.+.+.|+.+|+.|+ +++|++|+++|+|||+
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~ 79 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEE-LG-LDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADIC 79 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHH
Confidence 46899999999999888875433322221111 01 11233344455678999999999997 4579999999999999
Q ss_pred chhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhh
Q 027634 172 HLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQ 215 (221)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 215 (221)
+++.+.+....+. .+..+|+|.+|++++.++|+|++++..+
T Consensus 80 ~~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 80 LVPQVYNARRFGV---DLSPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHHHHhCC---CcccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 9999887654432 2578999999999999999999987654
No 65
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.66 E-value=8.9e-16 Score=102.12 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcch
Q 027634 94 LAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHL 173 (221)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~ 173 (221)
.++++++.|+.++++.+.+...... . . .++..+...+.+.+.|..||+.|++++|++|+++|+|||+++
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~-----~-----~-~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~ 70 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIE-----K-----G-RKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALA 70 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----h-----C-cHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHH
Confidence 4789999999998887665543322 1 1 144566788899999999999999999999999999999999
Q ss_pred hhhhHHhhccccccccccCchHHHHHHHHhcchhHHHH
Q 027634 174 PNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKV 211 (221)
Q Consensus 174 ~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 211 (221)
+.+.+....+. .....+|+|.+|++++.+||+++++
T Consensus 71 ~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 71 PLLWRLPALGI--ELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHHHHcCC--CCcccchHHHHHHHHHHCCHHHHHh
Confidence 99866553332 2235799999999999999999875
No 66
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.66 E-value=6.9e-16 Score=105.24 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchh
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLP 174 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 174 (221)
+++++++|+.+....+.+.....+... .. ....++...+...+.+.+.|+.||+.|++++|++|+++|+|||++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~ 76 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPL-LG---IAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAG 76 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHH-cC---ccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHH
Confidence 367899999999888887665443322 11 12344566778889999999999999998999999999999999999
Q ss_pred hhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhccCCC
Q 027634 175 NAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQQHSP 221 (221)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~p 221 (221)
.+.+......+....+.+|++.+|++++.++|+|++++.+.+-.-+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~ 123 (123)
T cd03181 77 ALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEVKLCEKP 123 (123)
T ss_pred HHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCCCcCCCC
Confidence 99887544322223567999999999999999999998876654443
No 67
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.66 E-value=5.1e-16 Score=95.01 Aligned_cols=71 Identities=34% Similarity=0.622 Sum_probs=63.3
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
++||+++.||+|++++++|+++|++|+.+.++...+.. .++.+.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQ--EEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCC--HHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 48999999999999999999999999999988654321 257889999999999999999999999999984
No 68
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.66 E-value=7.5e-16 Score=104.75 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchh
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLP 174 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 174 (221)
++++++++++.+.+.... ....+ +. ...+...+...+.+.+.+..||++|++++|++|+++|+||+++++
T Consensus 2 e~~~id~~~~~~~d~~~~-~~~~~----~~-----~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~ 71 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMG-LARIC----YS-----PDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYE 71 (121)
T ss_pred chHHHHHHHHHHHHHHHH-HHHhh----cC-----cchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHH
Confidence 467788887765543321 11111 11 122455667788899999999999998899999999999999999
Q ss_pred hhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhccC
Q 027634 175 NAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQQH 219 (221)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~ 219 (221)
.+.++..... ..++.+|+|.+|++++.++|++++++++++...
T Consensus 72 ~~~~~~~~~~--~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~~~~ 114 (121)
T cd03209 72 ALDQHRIFEP--DCLDAFPNLKDFLERFEALPKISAYMKSDRFIK 114 (121)
T ss_pred HHHHHHHhCc--cccccChHHHHHHHHHHHCHHHHHHHhcccCcC
Confidence 9988865432 346789999999999999999999999887654
No 69
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.66 E-value=8.8e-16 Score=107.19 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcch
Q 027634 94 LAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHL 173 (221)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~ 173 (221)
+.++++++|++|..+.+.+...... ...+++..+...+.+.+.|+.||+.|++++|++|+++|+|||+++
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~ 72 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAG----------FATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLF 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHh----------hccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHH
Confidence 3578899999998887766532211 134456677888899999999999999899999999999999999
Q ss_pred hhhhHHhhcc-----ccccccccCchHHHHHHHHhcchhHHHHHhh
Q 027634 174 PNAHYLVNAT-----DRGEILTSRDNVGRWWGEISNRDSWKKVVDM 214 (221)
Q Consensus 174 ~~l~~~~~~~-----~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 214 (221)
+.+.++.... .+...++.+|+|.+|++++.++|++++++..
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~ 118 (142)
T cd03190 73 TTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNF 118 (142)
T ss_pred HHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCH
Confidence 9987764321 1112346899999999999999999998775
No 70
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.65 E-value=1.7e-15 Score=103.79 Aligned_cols=117 Identities=24% Similarity=0.392 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHHhhcccC-CCCCChHHHHHHHHHHHHHHHHHHHH-hCCCCcccCCCcchhhhcch
Q 027634 96 KASIDQWLEAEGQSFNPPSSALVFQLALAPRM-NIKQDEGVIKQNEEKLAKVLDVYEKR-LGESRFLAGDEFSLADLSHL 173 (221)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~-L~~~~~l~G~~~t~aD~~~~ 173 (221)
++++++|+.+....+..............+.. +....++..+...+.+.+.++.+|++ +++++|++|+++|+|||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 56788898888777765544433322222221 23345677788889999999999997 55579999999999999999
Q ss_pred hhhhHHhhccccccccccCchHHHHHHHHhc--chhHHHHHhh
Q 027634 174 PNAHYLVNATDRGEILTSRDNVGRWWGEISN--RDSWKKVVDM 214 (221)
Q Consensus 174 ~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~--~p~~~~~~~~ 214 (221)
+.+.+...... ...+.+|+|.+|++++.+ ||+++++++.
T Consensus 82 ~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~~~p~~~~~~~~ 122 (126)
T cd03183 82 CEIMQPEAAGY--DVFEGRPKLAAWRKRVKEAGNPLFDEAHKI 122 (126)
T ss_pred HHHHHHHhcCC--cccccCchHHHHHHHHHHhcchhHHHHHHH
Confidence 98877654432 235789999999999999 9999998753
No 71
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.65 E-value=9.8e-16 Score=104.93 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcch
Q 027634 94 LAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHL 173 (221)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~ 173 (221)
.+++++++|+.+.++.+.+....... . .+...+...+.+.+.++.||++|++++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~ 70 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLA-----A------KGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALG 70 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc-----c------chHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 46899999999988776655433221 1 134556678889999999999999899999999999999999
Q ss_pred hhhhHHhhcc--cccc--ccccCchHHHHHHHHhcchhHHHHHhhhh
Q 027634 174 PNAHYLVNAT--DRGE--ILTSRDNVGRWWGEISNRDSWKKVVDMQK 216 (221)
Q Consensus 174 ~~l~~~~~~~--~~~~--~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 216 (221)
+.+.++.... .+.. ..+.+|++.+|++++.++|++++++...+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 117 (126)
T cd03185 71 SFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRD 117 (126)
T ss_pred HHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCHH
Confidence 9988875431 1111 24679999999999999999999987653
No 72
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.2e-15 Score=111.55 Aligned_cols=194 Identities=21% Similarity=0.245 Sum_probs=140.9
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCc----ceEEEeccCCCCCCChhhhh------------------------------
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVE----FQLISLNMAKGDHKKPDFLK------------------------------ 49 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~~------------------------------ 49 (221)
.+.||..-.||++.|..++++.+|+. +..+.--. +++...|..
T Consensus 37 ryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~---d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~ 113 (319)
T KOG2903|consen 37 RYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHL---DDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYI 113 (319)
T ss_pred eEEEEEeccCcHHHHHHHHHHHcCccccceeEEecccc---CCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhh
Confidence 57899888999999999999999985 22222100 011111111
Q ss_pred hCC----CCCCCeEEcCC---eeEeehHHHHHHHH---HhCCC-CC---CCcccCCChhHHHHHHHHHHHHhccCCchhH
Q 027634 50 IQP----FGQVPAFQDEK---ISLLESRAICRYVC---ENYPE-KG---NKGLFGTNPLAKASIDQWLEAEGQSFNPPSS 115 (221)
Q Consensus 50 ~~p----~~~vP~l~~~~---~~l~es~aI~~yL~---~~~~~-~~---~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (221)
..| .-+||||-|.. .+--||..|++.+. ..+.. .. -. |+|.+ .+++++++.+|+.+.+...+.
T Consensus 114 ~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lD-L~P~~--L~~~Ide~N~wvy~~INNGVY 190 (319)
T KOG2903|consen 114 ASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLD-LYPSS--LRAQIDETNSWVYDKINNGVY 190 (319)
T ss_pred cCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccc-cCCHH--HHHHHhhhhceecccccCcee
Confidence 122 23599999765 56789999999998 33322 11 13 67764 588899999998887776554
Q ss_pred HHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCC--cccCCCcchhhhcchhhhhHHhhccc------ccc
Q 027634 116 ALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESR--FLAGDEFSLADLSHLPNAHYLVNATD------RGE 187 (221)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~~~~~l~~~~~~~~------~~~ 187 (221)
.+ +....++.-+...+++-+.|+.+|+.|+++. |++|+++|-|||.+++.+.++..+.. -..
T Consensus 191 k~----------GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ 260 (319)
T KOG2903|consen 191 KC----------GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKT 260 (319)
T ss_pred ee----------ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhh
Confidence 43 3356667788888899999999999999865 99999999999999999998876521 122
Q ss_pred ccccCchHHHHHHHHhc-chhHHHHHh
Q 027634 188 ILTSRDNVGRWWGEISN-RDSWKKVVD 213 (221)
Q Consensus 188 ~~~~~p~l~~~~~~~~~-~p~~~~~~~ 213 (221)
...+||+|..|..++-. .|+|..+..
T Consensus 261 ir~~Yp~l~~~lk~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 261 IRDEYPNLHNWLKNIYWNIPGFSSTTD 287 (319)
T ss_pred hhccCcHHHHHHHHHHhhccchhhccc
Confidence 35589999999999988 798887654
No 73
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.64 E-value=1.8e-15 Score=102.24 Aligned_cols=115 Identities=18% Similarity=0.287 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHHHHHhccCCchhHHHHHHHhhccc--CCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhh
Q 027634 92 NPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPR--MNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLAD 169 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD 169 (221)
|+.+++++++|+.+++..+.+.....+........ .....++...++....+.+.|..||+.|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 45689999999999887776655544322111110 0124556778888999999999999999988999999999999
Q ss_pred hcchhhhhHHhhccccccccccCchHHHHHHHHhcchhH
Q 027634 170 LSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSW 208 (221)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 208 (221)
|++++.+.++...+. .....+|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVVKL--RVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhcCC--CCccccHHHHHHHHHHHhccCC
Confidence 999999988766543 2346899999999999999974
No 74
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.63 E-value=3.5e-15 Score=101.16 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=86.2
Q ss_pred CCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccC----CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCc
Q 027634 90 GTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRM----NIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEF 165 (221)
Q Consensus 90 p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 165 (221)
|.++.+++++++|+.+....+.+............+.. +...++...+.....+.+.|+.||++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 46888999999999998888777654332222111100 00123445566777899999999999999999999999
Q ss_pred chhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcch
Q 027634 166 SLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRD 206 (221)
Q Consensus 166 t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 206 (221)
|+|||++++.+.++..... ....+|+|.+|++++++||
T Consensus 82 t~ADi~l~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALARGP---LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHcCc---ccccCchHHHHHHHHhcCC
Confidence 9999999988888765432 3678999999999999987
No 75
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.61 E-value=3.5e-15 Score=101.04 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchh
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLP 174 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 174 (221)
+++++++|+.+....+.+.....+....... . ...+...+.+.+.|+.||+.|++++|++|+++|+||+++++
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~ 74 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGG----A---EPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVA 74 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcC----C---CCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHH
Confidence 4788999999887777765544433322211 1 22445677899999999999988899999999999999999
Q ss_pred hhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhh
Q 027634 175 NAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQK 216 (221)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 216 (221)
.+.++..... .....+|+|.+|++++.++|++++....+.
T Consensus 75 ~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 114 (118)
T cd03177 75 TVSTLEALLP--LDLSKYPNVRAWLERLKALPPYEEANGKGA 114 (118)
T ss_pred HHHHHHHhcC--CChhhCchHHHHHHHHHcccchHHHHHHHH
Confidence 9988865211 124679999999999999999999775543
No 76
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.61 E-value=2.9e-15 Score=92.26 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=57.8
Q ss_pred eEEecCC-------CChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 5 VKVYGPP-------LSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~-------~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
++||.++ .||+|++++++|+++||+|+.+.++.. ..+|.|++|+|+++|..+.||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 3677766 799999999999999999999988653 16899999999999999999999999998
Q ss_pred Hh
Q 027634 78 EN 79 (221)
Q Consensus 78 ~~ 79 (221)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 74
No 77
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.60 E-value=1.1e-14 Score=100.97 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhC--CCCcccCCCcchhhhcc
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLG--ESRFLAGDEFSLADLSH 172 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~~ 172 (221)
+.++++++++.+.+.+...... .+.+ .....+...+...+.+.+.|..||+.|+ +++|++|+++|+||+++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l 75 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILML-----PFLP--PEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHL 75 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----ccCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHH
Confidence 5677888887665543322111 1111 1111111223334466899999999998 67899999999999999
Q ss_pred hhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhcc
Q 027634 173 LPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQQ 218 (221)
Q Consensus 173 ~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 218 (221)
++.+.++..... ..+..+|+|.+|++++.++|+++++++.+...
T Consensus 76 ~~~l~~~~~~~~--~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~~~ 119 (137)
T cd03208 76 LEAILMVEELDP--SLLSDFPLLQAFKTRISNLPTIKKFLQPGSPR 119 (137)
T ss_pred HHHHHHHHHhch--hhhccChHHHHHHHHHHcCHHHHHHHhcCCCC
Confidence 999988765432 34678999999999999999999999976643
No 78
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.60 E-value=8.1e-15 Score=100.33 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC---CCcccCCCcchhhhc
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGE---SRFLAGDEFSLADLS 171 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD~~ 171 (221)
++++++.+.+.+.+...... . ..+. ..+...+...+.+.+.|..||+.|++ ++|++|+++|+||++
T Consensus 3 e~~~vd~~~~~~~d~~~~~~-~----~~~~------~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~ 71 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYV-R----MIYQ------NYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYN 71 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH-H----HhcC------cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHH
Confidence 56777877776554322111 1 1111 11334556677789999999999974 589999999999999
Q ss_pred chhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhhhhcc
Q 027634 172 HLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQKQQ 218 (221)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 218 (221)
+++.+.++..... ..++.+|+|.+|++++.++|+++++++.++..
T Consensus 72 l~~~~~~~~~~~~--~~~~~~P~l~~~~~rv~~~p~v~~~~~~~~~~ 116 (126)
T cd03210 72 LFDLLDIHLVLAP--GCLDAFPLLKAFVERLSARPKLKAYLESDAFK 116 (126)
T ss_pred HHHHHHHHHHhCh--HhhhcChHHHHHHHHHHhCcHHHHHHhCcCCC
Confidence 9999888765422 24678999999999999999999999987654
No 79
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.56 E-value=1.4e-14 Score=98.95 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCcchhhhcc
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGE--SRFLAGDEFSLADLSH 172 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~~ 172 (221)
+|++.+.|+..++..+...... +.. ++..++..+.+.+.|+.+|+.|++ ++|++|+++|+|||++
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~ 68 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKL-----LGA--------PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMI 68 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHH-----Hhc--------cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHh
Confidence 4788888888876443322211 111 333456778899999999999975 7999999999999999
Q ss_pred hhhhhHHhhcccc---ccccccCchHHHHHHHHhcchhHHHHHhhhh
Q 027634 173 LPNAHYLVNATDR---GEILTSRDNVGRWWGEISNRDSWKKVVDMQK 216 (221)
Q Consensus 173 ~~~l~~~~~~~~~---~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 216 (221)
++++.++...... ....+.+|+|.+|++++.++|++++++..++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~ 115 (124)
T cd03184 69 WPWFERLEALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTE 115 (124)
T ss_pred hHHHHHHHHHHhhccccCCcccChHHHHHHHHhccChHHHHHhCCHH
Confidence 9999877654321 1236789999999999999999999988654
No 80
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.55 E-value=1e-14 Score=96.24 Aligned_cols=76 Identities=17% Similarity=0.294 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhh
Q 027634 135 VIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDM 214 (221)
Q Consensus 135 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 214 (221)
..+.....+.+.++.||++|++++|++|+++|+|||++++.+.+....+ ....+|+|.+|++++.++|+++++++.
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~----~~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG----LLPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC----CCCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 3566678899999999999998999999999999999999998876543 257899999999999999999998764
No 81
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.52 E-value=6.3e-14 Score=95.58 Aligned_cols=87 Identities=23% Similarity=0.351 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhCC----------------CCcccCCCcchhhhcchhhhhHHhhcc---ccccccc
Q 027634 130 KQDEGVIKQNEEKLAKVLDVYEKRLGE----------------SRFLAGDEFSLADLSHLPNAHYLVNAT---DRGEILT 190 (221)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~le~~L~~----------------~~~l~G~~~t~aD~~~~~~l~~~~~~~---~~~~~~~ 190 (221)
..+++..+...+.+...|+.||.+|++ ++|++|+++|+|||.+++.+.++..+. .+.....
T Consensus 21 ~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~ 100 (134)
T cd03198 21 NSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPA 100 (134)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 345566777888999999999999986 689999999999999999998775431 1122347
Q ss_pred cCchHHHHHHHHhcchhHHHHHhhhh
Q 027634 191 SRDNVGRWWGEISNRDSWKKVVDMQK 216 (221)
Q Consensus 191 ~~p~l~~~~~~~~~~p~~~~~~~~~~ 216 (221)
.+|+|.+|++++.+||+|++++...+
T Consensus 101 ~~P~L~aw~~ri~aRPsfk~t~~~~~ 126 (134)
T cd03198 101 DLTGLWRYLKNAYQREEFTNTCPADQ 126 (134)
T ss_pred cCHHHHHHHHHHHCCHHHHHHcCCHH
Confidence 89999999999999999999987654
No 82
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.51 E-value=6e-14 Score=91.08 Aligned_cols=95 Identities=24% Similarity=0.360 Sum_probs=73.9
Q ss_pred HHHHHHhCCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHH
Q 027634 73 CRYVCENYPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEK 152 (221)
Q Consensus 73 ~~yL~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~ 152 (221)
++||++..+ ++|+++.+.+.+++|++.....+. ....+.+.+.++.+|+
T Consensus 1 ~r~~~~~~~------~~~~~~~~~~~vd~~~d~~~~~l~-------------------------~~~~~~~~~~l~~le~ 49 (96)
T cd03200 1 ARFLYRLLG------PAPNAPNAATNIDSWVDTAIFQLA-------------------------EGSSKEKAAVLRALNS 49 (96)
T ss_pred CchHHHHhc------ccCCCchHHHHHHHHHHHHHHHHh-------------------------cCCHHHHHHHHHHHHH
Confidence 478888832 999999999999999986442221 0123445568889999
Q ss_pred HhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhc
Q 027634 153 RLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISN 204 (221)
Q Consensus 153 ~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 204 (221)
+|++++|++|+++|+|||++++.+.+. .. ..+.+|+|.+|++|+.+
T Consensus 50 ~L~~~~fl~Gd~~tiADi~l~~~l~~~---~~---~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 50 ALGRSPWLVGSEFTVADIVSWCALLQT---GL---ASAAPANVQRWLKSCEN 95 (96)
T ss_pred HHcCCCccCCCCCCHHHHHHHHHHHHc---cc---ccccChHHHHHHHHHHh
Confidence 999999999999999999999887653 21 23679999999999976
No 83
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.51 E-value=8.2e-14 Score=93.57 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhC-CCCcccCCCcchhhhc
Q 027634 93 PLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLG-ESRFLAGDEFSLADLS 171 (221)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aD~~ 171 (221)
+.+++++.+|+.++.+.+.+......+...+. + ...+...+...+.+.+.+..+|.+|+ +++|++| ++|+||++
T Consensus 1 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~ 75 (114)
T cd03195 1 PRQRARARQVQAWLRSDLLPIRVERSTEVVFA---G-AKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTD 75 (114)
T ss_pred CHhhHHHHHHHHHHHhhHHHHHHhCCccceec---C-CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHH
Confidence 35789999999999988766411111011011 1 11113345667777888999999995 5589999 59999999
Q ss_pred chhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhh
Q 027634 172 HLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDM 214 (221)
Q Consensus 172 ~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 214 (221)
+++.+.+....+.+ ++ |++.+|++|+.+||+|+++++.
T Consensus 76 l~~~~~~~~~~g~~---l~--p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 76 LALMLNRLVLNGDP---VP--ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred HHHHHHHHHHcCCC---CC--HHHHHHHHHHHCCHHHHHHHhc
Confidence 99999998887652 23 9999999999999999999864
No 84
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.51 E-value=4.7e-14 Score=93.41 Aligned_cols=104 Identities=24% Similarity=0.299 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchh
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLP 174 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~ 174 (221)
+++++++|+.+..+.+.+..........+.+ ....+++..+...+++.+.++.||..|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~ 79 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLG--LGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAA 79 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeecc--CCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHH
Confidence 5789999999988887776544322222211 23555677888999999999999999988899999999999999999
Q ss_pred hhhHHhhccccccccccCchHHHHHHHHh
Q 027634 175 NAHYLVNATDRGEILTSRDNVGRWWGEIS 203 (221)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~p~l~~~~~~~~ 203 (221)
.+.++..... ....+|+|.+|+++++
T Consensus 80 ~~~~~~~~~~---~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 80 YTHVADEGGF---DLADYPAIRAWLARIE 105 (105)
T ss_pred HHHhccccCC---ChHhCccHHHHHHhhC
Confidence 9988765443 2577999999999874
No 85
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.51 E-value=7e-14 Score=85.31 Aligned_cols=68 Identities=26% Similarity=0.417 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHH
Q 027634 134 GVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGE 201 (221)
Q Consensus 134 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~ 201 (221)
+..++..+.+.+.|+.||++|++++|++|++||+|||++++.+.++...+.+....+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 46788899999999999999999999999999999999999999999887644567899999999986
No 86
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.50 E-value=8.6e-14 Score=90.42 Aligned_cols=74 Identities=24% Similarity=0.487 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcch
Q 027634 132 DEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRD 206 (221)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 206 (221)
.++..+...+.+.+.|+.+|+.|++++|++|+++|+||+++++.+.++........ .+++|+|.+|++++.+||
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcc-cccCHHHHHHHHHHHcCC
Confidence 45567788899999999999999999999999999999999999999888865211 389999999999999998
No 87
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=6.3e-13 Score=94.20 Aligned_cols=182 Identities=16% Similarity=0.199 Sum_probs=132.3
Q ss_pred CCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCCCCCCCcccC
Q 027634 11 PLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYPEKGNKGLFG 90 (221)
Q Consensus 11 ~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~~~~~~~l~p 90 (221)
+....|..+...|+..++||+.+.-. +.+| ++|.|++|.|..|..+++|-.+|..+.+.+.-.-+ + ..
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~-s-~l- 99 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLT-S-WL- 99 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchh-h-hh-
Confidence 44567899999999999999987532 2444 69999999999999999999999999999864321 1 11
Q ss_pred CChhHHHHHHHHHHHHhccCCchhHHHHHHH------hhcccC-------------------------CCCCChHHHHHH
Q 027634 91 TNPLAKASIDQWLEAEGQSFNPPSSALVFQL------ALAPRM-------------------------NIKQDEGVIKQN 139 (221)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~-------------------------~~~~~~~~~~~~ 139 (221)
+..+++.++..++.++..+..+-....+.. +...+. ....+....++.
T Consensus 100 -sE~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqV 178 (257)
T KOG3027|consen 100 -SEDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQV 178 (257)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHH
Confidence 334677777777766655543322221111 111111 123444557777
Q ss_pred HHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhcccc----ccccccCchHHHHHHHHhcc
Q 027634 140 EEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDR----GEILTSRDNVGRWWGEISNR 205 (221)
Q Consensus 140 ~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~----~~~~~~~p~l~~~~~~~~~~ 205 (221)
.+....+++.|+..|+..+||.|++||-+|..+++.+..+...... ...++.|++|-++++|+.+.
T Consensus 179 ie~vdkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 179 IEQVDKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999988776321 22357899999999999863
No 88
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.49 E-value=1.4e-13 Score=90.26 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=72.1
Q ss_pred HHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHH
Q 027634 100 DQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYL 179 (221)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~ 179 (221)
++|+.+..+.+.+............. ....+...+++.+.++.+|+.|++++|++|+++|+||+.+++.+.+.
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~ 74 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFGA-------PLDKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALA 74 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhCC-------HhHHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHH
Confidence 45666776666544333222211111 12355678899999999999999999999999999999999988764
Q ss_pred hhccccccccccCchHHHHHHHHhcchhH
Q 027634 180 VNATDRGEILTSRDNVGRWWGEISNRDSW 208 (221)
Q Consensus 180 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 208 (221)
.... ...+.+|+|.+|++++.++|+|
T Consensus 75 ~~~~---~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 75 PEGG---VDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred hccC---CChhhCcHHHHHHHHHHhCcCC
Confidence 4322 2357899999999999999985
No 89
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.48 E-value=4.6e-13 Score=90.78 Aligned_cols=106 Identities=19% Similarity=0.291 Sum_probs=70.9
Q ss_pred ChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhC---CCCcccCCCcchh
Q 027634 92 NPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLG---ESRFLAGDEFSLA 168 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~a 168 (221)
|+..|+++++++.+... .... .+.+.+.... . +.+.+.++.||+.|+ +++|++| ++|+|
T Consensus 1 d~~~ra~~~~~~~~~~~-----~~~~----~~~~~~~~~~-~-------~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlA 62 (120)
T cd03203 1 DPAKREFADELLAYTDA-----FTKA----LYSSLIKGDP-S-------AEAAAALDYIENALSKFDDGPFFLG-QFSLV 62 (120)
T ss_pred CHHHHHHHHHHHHHHHH-----HHHH----HHHHHhcCCc-h-------HHHHHHHHHHHHHHHhcCCCCCcCC-CccHH
Confidence 45689999999987221 1111 1121111111 1 123456677777775 4799999 99999
Q ss_pred hhcchhhhhHHhhc---cccccccccCchHHHHHHHHhcchhHHHHHhhh
Q 027634 169 DLSHLPNAHYLVNA---TDRGEILTSRDNVGRWWGEISNRDSWKKVVDMQ 215 (221)
Q Consensus 169 D~~~~~~l~~~~~~---~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 215 (221)
||++++.+.++... ..+....+.+|+|.+|++++.++|+++++....
T Consensus 63 Di~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~ 112 (120)
T cd03203 63 DIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDP 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCH
Confidence 99999999876431 111223468999999999999999999987753
No 90
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.47 E-value=2.1e-13 Score=90.22 Aligned_cols=79 Identities=27% Similarity=0.329 Sum_probs=66.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhCCC----------CcccCCCcchhhhcchhhhhHHhhcccccc--ccccCchHHH
Q 027634 130 KQDEGVIKQNEEKLAKVLDVYEKRLGES----------RFLAGDEFSLADLSHLPNAHYLVNATDRGE--ILTSRDNVGR 197 (221)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~le~~L~~~----------~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~--~~~~~p~l~~ 197 (221)
..+.+..++..+.+.+.|..||.+|.++ +|++|+++|+|||++++.+.++.....+.. ....+|+|.+
T Consensus 21 ~~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~ 100 (111)
T cd03204 21 HDNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEA 100 (111)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHH
Confidence 5567778899999999999999999754 499999999999999999998876543211 1367999999
Q ss_pred HHHHHhcchhH
Q 027634 198 WWGEISNRDSW 208 (221)
Q Consensus 198 ~~~~~~~~p~~ 208 (221)
|++|+.+||+|
T Consensus 101 w~~rv~aRpsf 111 (111)
T cd03204 101 YFERVLQRESF 111 (111)
T ss_pred HHHHHHcCCCC
Confidence 99999999986
No 91
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.42 E-value=2e-12 Score=86.82 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHh---CCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHh
Q 027634 138 QNEEKLAKVLDVYEKRL---GESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVD 213 (221)
Q Consensus 138 ~~~~~~~~~l~~le~~L---~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 213 (221)
...+.+.+.+..+|..+ ++++|++|+ +|+||+++++.+.+....+. +..|+|.+|++++.++|+++++++
T Consensus 41 ~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~-----~~~P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 41 AVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYGL-----PLSPAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHCCHHHHHHHh
Confidence 33344444555555544 567899999 99999999999988865433 123999999999999999999986
No 92
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.41 E-value=4.1e-13 Score=90.96 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CCcccCCCcchhhhcchhhhhHHhhccc---cccccccCchHHHHHHHHhcchhHHHHH
Q 027634 137 KQNEEKLAKVLDVYEKRLGE-SRFLAGDEFSLADLSHLPNAHYLVNATD---RGEILTSRDNVGRWWGEISNRDSWKKVV 212 (221)
Q Consensus 137 ~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~~~~~l~~~~~~~~---~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 212 (221)
++..+.+.+.|..||..|++ ++|++|+++|+|||++++.+.++..... +....+.+|+|.+|++++.+||+|++++
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~ 108 (121)
T cd03201 29 DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTK 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcC
Confidence 44556788899999999985 7999999999999999998877654311 1122478999999999999999999987
Q ss_pred hhhh
Q 027634 213 DMQK 216 (221)
Q Consensus 213 ~~~~ 216 (221)
..++
T Consensus 109 ~~~~ 112 (121)
T cd03201 109 AEKE 112 (121)
T ss_pred CCHH
Confidence 7543
No 93
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.38 E-value=2e-12 Score=78.74 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=49.8
Q ss_pred CCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHh
Q 027634 11 PLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCEN 79 (221)
Q Consensus 11 ~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 79 (221)
+.+++|.+++++|++.|+||+.+.+ .. .+ ..+|.|+||+|++||.+|+||.+|+.||+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~--~~-----~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR--AN-----AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec--CC-----cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 4577899999999999999998832 11 11 1578899999999999999999999999864
No 94
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.33 E-value=3.6e-12 Score=83.29 Aligned_cols=99 Identities=26% Similarity=0.418 Sum_probs=72.9
Q ss_pred HHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHH
Q 027634 100 DQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYL 179 (221)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~ 179 (221)
+.|+.+..+.+............. .....++..+...+.+.+.++.||++|++++|++|+++|+||+.+++.+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~ 77 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFV----GPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARL 77 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeecc----CCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHH
Confidence 355666666555544443221111 1133466788889999999999999999999999999999999999999998
Q ss_pred hhccccccccccCchHHHHHHHH
Q 027634 180 VNATDRGEILTSRDNVGRWWGEI 202 (221)
Q Consensus 180 ~~~~~~~~~~~~~p~l~~~~~~~ 202 (221)
..........+.+|+|.+|++++
T Consensus 78 ~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 78 DLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHhhhhhhhhccCccHHHHHHhC
Confidence 87654222357899999999874
No 95
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.28 E-value=2.7e-12 Score=83.98 Aligned_cols=66 Identities=33% Similarity=0.446 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC--cccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhc
Q 027634 135 VIKQNEEKLAKVLDVYEKRLGESR--FLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISN 204 (221)
Q Consensus 135 ~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 204 (221)
..+...+.+.+.|..+|+.|++++ |++|++||+||+++++.|..+... . ..+.+|+|.+|++||++
T Consensus 32 ~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~-~---~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 32 SGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA-D---FPKDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC-H---HTTTCHHHHHHHHHHHT
T ss_pred hHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc-c---cccccHHHHHHHHhhcC
Confidence 466777889999999999998876 999999999999999999766643 1 11689999999999974
No 96
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.25 E-value=1.9e-11 Score=80.70 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCcchhhhcc
Q 027634 95 AKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGE--SRFLAGDEFSLADLSH 172 (221)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~~ 172 (221)
++++++.+++...+......... + .+ .++...+...+...+.+.+.+..||++|++ ++|++|+++|+||+++
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~-~----~~-~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l 75 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYF-Y----EK-DGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVV 75 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-h----cC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHH
Confidence 46778888887554433322221 1 10 011123566777888899999999999987 8999999999999999
Q ss_pred hhhhhHHhhccccccc-cccCchHHHHHHHH
Q 027634 173 LPNAHYLVNATDRGEI-LTSRDNVGRWWGEI 202 (221)
Q Consensus 173 ~~~l~~~~~~~~~~~~-~~~~p~l~~~~~~~ 202 (221)
++.+.++..... .. ...+|+|.+|++++
T Consensus 76 ~~~~~~~~~~~~--~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 76 FDVLDYLLYLDP--KLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHHhhCc--hhhHHhChhHHHHHHhC
Confidence 999988866543 22 67899999999874
No 97
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.24 E-value=3.2e-11 Score=75.40 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=61.8
Q ss_pred cceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 3 TPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 3 ~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
++++||+.++||+|.+++.+|...||+|+.+.++-.. ...++...++..++|++..+|..+.++.+|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~---~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDA---RGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCCh---HHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 4689999999999999999999999999998775431 22455666788999999999999999999999984
No 98
>PRK10638 glutaredoxin 3; Provisional
Probab=99.23 E-value=3.6e-11 Score=75.93 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=62.6
Q ss_pred CcceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 2 ATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 2 ~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
|+++++|+.+.||+|++++.+|.++||+|+.+.++... ...+++.+.++..++|++..+|..+.+...+..+-.
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 56899999999999999999999999999998886431 124667788999999999999999999887776543
No 99
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.22 E-value=3.6e-11 Score=76.91 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccc----cccccCchHHHHHHHHh
Q 027634 134 GVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRG----EILTSRDNVGRWWGEIS 203 (221)
Q Consensus 134 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~----~~~~~~p~l~~~~~~~~ 203 (221)
.......+.+.+.++.+|+.|++++|++|+++|+|||++++.+.++....... ..++.+|+|.+|++|+.
T Consensus 15 ~~~~~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 15 TLTREIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 33446778899999999999999999999999999999999998876532111 13567999999999873
No 100
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.22 E-value=4.3e-11 Score=81.53 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhc
Q 027634 136 IKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISN 204 (221)
Q Consensus 136 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 204 (221)
.+...+.+.+.|+.+|++|++++|++|+++|+||+++++.+.+...... ....+.+|+|.+|++|+.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~-~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSP-FPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCc-ccccccCChHHHHHHHHhc
Confidence 4577788999999999999999999999999999999999998876522 2345789999999999976
No 101
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.15 E-value=1.1e-10 Score=76.27 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=60.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHH
Q 027634 128 NIKQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEI 202 (221)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 202 (221)
.....++..+....++.+.|..+|++|++++| +++|+|||++++.+.+......+....+++|+|.+|++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 27 EEKRSQPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HhhhChHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 34667778999999999999999999998888 8999999999999998865433223357899999999875
No 102
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=4.7e-09 Score=79.71 Aligned_cols=180 Identities=15% Similarity=0.159 Sum_probs=124.6
Q ss_pred ChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC-CeeEeehHHHHHHHHHhCCCCCCCcccCC
Q 027634 13 STAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE-KISLLESRAICRYVCENYPEKGNKGLFGT 91 (221)
Q Consensus 13 s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~l~es~aI~~yL~~~~~~~~~~~l~p~ 91 (221)
++-|..+.+.+..++-|.+.+..+ .++ ..|.|++|+|+.+ |..+.+-.-|..+|.....+- . +-+.
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ss-------N~~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky--~-~d~d 83 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSS-------NPW---RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKY--N-LDAD 83 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeec-------CCC---CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccC--C-cCcc
Confidence 788999999999999765555432 234 3889999999955 599999999999999852211 1 1111
Q ss_pred -ChhHHHHHHHHHHHHhccCCchhHHHHHHH----------hhc-----ccC-----------------CCCCChHHHHH
Q 027634 92 -NPLAKASIDQWLEAEGQSFNPPSSALVFQL----------ALA-----PRM-----------------NIKQDEGVIKQ 138 (221)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~~~-----~~~-----------------~~~~~~~~~~~ 138 (221)
...+.+....|+.+....+.++....+|.. ++. |.. ..+...+..++
T Consensus 84 l~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~ 163 (313)
T KOG3028|consen 84 LSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQ 163 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHH
Confidence 245677888888877776665544333221 000 000 01222234556
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhcccccc----ccccCchHHHHHHHHhcc
Q 027634 139 NEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGE----ILTSRDNVGRWWGEISNR 205 (221)
Q Consensus 139 ~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~----~~~~~p~l~~~~~~~~~~ 205 (221)
..+...+++..|...|+++.|++|++||--|+.+++.+..+........ .+..++||.+|++++.+.
T Consensus 164 i~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~ 234 (313)
T KOG3028|consen 164 IYKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRSL 234 (313)
T ss_pred HHHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHHH
Confidence 6777889999999999999999999999999999999998655532111 133489999999998753
No 103
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.07 E-value=8.6e-10 Score=67.65 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=59.8
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
+++||+.++||+|.+++-+|...|++|+.+.++-.. ....+.......++|++..+|..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 589999999999999999999999999988876432 12334455677889999999999999999999984
No 104
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.06 E-value=1.1e-09 Score=67.15 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=49.8
Q ss_pred CChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHh
Q 027634 12 LSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCEN 79 (221)
Q Consensus 12 ~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 79 (221)
.||+|.++.+.|+.+|+||+.+... ++ ...|.|++|+|+++|..+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~-------n~---~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSN-------NP---WRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecC-------CC---CCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 4899999999999999999877432 11 2478999999999999999999999999875
No 105
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.02 E-value=4.3e-10 Score=76.69 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccc----cccccccCchHHHHHHHHh
Q 027634 135 VIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATD----RGEILTSRDNVGRWWGEIS 203 (221)
Q Consensus 135 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~----~~~~~~~~p~l~~~~~~~~ 203 (221)
..++......+.|+.|+..|++++|++|++||.+|+.+++.+..+..... -......+|+|.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 45677788899999999999999999999999999999999988764411 0123568999999999973
No 106
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=99.01 E-value=4.2e-09 Score=68.36 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=77.5
Q ss_pred ChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhCC-CCcccCCCcchhhh
Q 027634 92 NPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVYEKRLGE-SRFLAGDEFSLADL 170 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~ 170 (221)
|..+|++.+++..|..+.|.+.....-....+. ........+...+.+.+.+...+.+|.+ ++||+| +.|+||.
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~----~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFG-ewsIAD~ 75 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFR----GARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFG-EWSIADA 75 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS------------HHHHHHHHHHHHHHHHHTTT--SSTTS-S--HHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhc----CCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCccc-cchHHHH
Confidence 456899999999999998876544432222222 2333445667777778888888898876 689998 6999999
Q ss_pred cchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHHhh
Q 027634 171 SHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVVDM 214 (221)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 214 (221)
.+++++.++...+. +--+++..|.++.-++|++++++..
T Consensus 76 dlA~ml~Rl~~~gd-----~vP~~l~~Ya~~qwqrpsVQ~Wla~ 114 (117)
T PF14834_consen 76 DLALMLNRLVTYGD-----PVPERLADYAERQWQRPSVQRWLAL 114 (117)
T ss_dssp HHHHHHHHHHTTT---------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----CCCHHHHHHHHHHHCCHHHHHHHHH
Confidence 99999999988764 3335999999999999999999874
No 107
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.99 E-value=1.2e-09 Score=75.46 Aligned_cols=72 Identities=24% Similarity=0.247 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccc----cccccCchHHHHHHHHhc
Q 027634 133 EGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRG----EILTSRDNVGRWWGEISN 204 (221)
Q Consensus 133 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~----~~~~~~p~l~~~~~~~~~ 204 (221)
+...++..+...+.++.|++.|++++|++|+++|.+|+.+++.+..+....... .....+|+|.+|++|+.+
T Consensus 59 ~~~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 59 TEVEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 445677888889999999999999999999999999999999988776433211 125679999999999975
No 108
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.96 E-value=2.3e-09 Score=65.89 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=57.5
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICR 74 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 74 (221)
+++||+.+.||+|++++.+|.++||+|+.+.+.-. ....+++.+.++..++|++..+|..+.+-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 68999999999999999999999999999877542 2234578888999999999999988877665544
No 109
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.83 E-value=1.3e-08 Score=62.09 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=58.5
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRY 75 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 75 (221)
++++|+.++||+|++++.+|..+|++|+.+.+.... ....++...++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~--~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG--ELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999977765431 2345667778999999999999999999887763
No 110
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.82 E-value=1.4e-08 Score=63.47 Aligned_cols=61 Identities=15% Similarity=0.292 Sum_probs=47.8
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEe
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLL 67 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 67 (221)
+++||+.++||+|.+++-+|.++||+|+.+.++-.. ...+....++..++|+++.+|..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~---~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP---EAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHcCCCCcCEEEECCEEEe
Confidence 489999999999999999999999999999886431 0112223468889999998875543
No 111
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.80 E-value=1.3e-08 Score=62.36 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=51.9
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEee
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLE 68 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 68 (221)
++++|+.++||+|.+++.+|.+.|++|+.+.++.. ....+++.+.+|.+++|++.++|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 47999999999999999999999999998877542 2234567778899999999988866554
No 112
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.79 E-value=2.3e-08 Score=61.70 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=56.7
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCC-CCCeEEcCCeeEeehHHHHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFG-QVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
+++||+.+.||+|.+++-+|...||+|+.+.++... ....++....... ++|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~--~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP--ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 478999999999999999999999999998886431 1123344444444 89999999999999988887643
No 113
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.79 E-value=2.2e-08 Score=61.44 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=54.4
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeE--eehHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISL--LESRAICRYV 76 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l--~es~aI~~yL 76 (221)
++||+.++||+|++++.+|.+.|++|..+.++-. ....+++.+.++...+|+++.+|..+ .++..|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 7999999999999999999999999988766432 12234566778999999999888666 4555555554
No 114
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.78 E-value=1.6e-08 Score=69.82 Aligned_cols=62 Identities=18% Similarity=0.316 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHh-CCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhc
Q 027634 142 KLAKVLDVYEKRL-GESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISN 204 (221)
Q Consensus 142 ~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 204 (221)
.+...++.+-+.+ ++++|+.|++||+|||++++++..+..... ...+..+|+|.+|++||.+
T Consensus 83 ~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~-~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 83 WLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPA-FKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhcc-ccchhhCcCHHHHHHHHHH
Confidence 3444444444444 456899999999999999999988877643 2246789999999999986
No 115
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.5e-08 Score=61.02 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=55.9
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYV 76 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 76 (221)
.+++|..+.||+|.++.-+|..+|++|+.+.++..............++..++|++..||..+.....+.++.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHH
Confidence 4899999999999999999999999999999876542111122334458899999999997777655554443
No 116
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.67 E-value=1.2e-07 Score=59.96 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=61.7
Q ss_pred ceEEecCCCChhhHHHHHHHHh-----cCCcceEEEeccCCCCCCChhhhhhCC--CCCCCeEEcCCeeEeehHHHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLE-----KDVEFQLISLNMAKGDHKKPDFLKIQP--FGQVPAFQDEKISLLESRAICRYV 76 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p--~~~vP~l~~~~~~l~es~aI~~yL 76 (221)
++++|+.++||+|.+++-+|.. .|++|+.+.++-.. ....++..... ..++|++..+|..+.+...|..++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHH
Confidence 6899999999999999999999 89999988886431 11234444333 358999999999999999999999
Q ss_pred HHhCC
Q 027634 77 CENYP 81 (221)
Q Consensus 77 ~~~~~ 81 (221)
.+.++
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 98875
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.65 E-value=9.6e-08 Score=59.57 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=58.1
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCE 78 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 78 (221)
+++|+.++||+|.+++-+|+..|++|+.+.++... ....++.......++|++..+|..+.+...+..+.++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 58999999999999999999999999999886432 1224455566788999999999999888877765543
No 118
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.60 E-value=9.5e-08 Score=59.16 Aligned_cols=71 Identities=10% Similarity=0.216 Sum_probs=52.3
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhC-CCCCCCeEE-cCCeeEeehH--HHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQ-PFGQVPAFQ-DEKISLLESR--AICRYV 76 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~vP~l~-~~~~~l~es~--aI~~yL 76 (221)
+++||+.++||+|++++..|.+.|++|+.+.++ +.......+.+.+ +...+|+++ ++|..+.++. .|..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~--~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIE--EDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCc--CCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 478999999999999999999999999876654 2222234556666 899999997 5666665543 344444
No 119
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.54 E-value=3.6e-07 Score=57.35 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=60.6
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCC-CCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGD-HKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCE 78 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 78 (221)
++++|+.++||+|.+++-+|...+++|+.+.++..... .....+.+.+...++|++..+|..+.+...|..+..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999988765321 1112344566778999999999999999998887654
No 120
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.52 E-value=3.6e-07 Score=59.48 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=56.6
Q ss_pred cceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCC-CCChhhhhhCCCCCCCeEEcCCeeEeehHHHHH
Q 027634 3 TPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGD-HKKPDFLKIQPFGQVPAFQDEKISLLESRAICR 74 (221)
Q Consensus 3 ~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 74 (221)
.++++|+.++||+|.+++-+|...|++|+.+.|+..... .....+...+...++|.+..+|..+.+...+..
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 578999999999999999999999999998888743210 001234445677899999999999888777666
No 121
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.52 E-value=3.1e-07 Score=56.18 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=43.9
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCe
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKI 64 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 64 (221)
++||+.+.||+|++++-+|.++||+|+.+.++-.. ....++ ...+..++|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~--~~~~~~-~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP--EAIDYV-KAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH--HHHHHH-HHcCCcccCEEEECCC
Confidence 58999999999999999999999999998886421 111222 3356778999998663
No 122
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.51 E-value=5.6e-07 Score=57.03 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=58.0
Q ss_pred eEEecCCCChhhHHHHHHHHhcC-----CcceEEEeccCCCCCCChhhhhhCCC--CCCCeEEcCCeeEeehHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKD-----VEFQLISLNMAKGDHKKPDFLKIQPF--GQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~--~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
+++|+.++||+|.+++-+|...+ ++|+.+.++-.. ....++...... .+||++..+|..+.++..|..++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~--~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG--ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999985 567776665321 112344444333 689999999999999999999998
Q ss_pred HhCC
Q 027634 78 ENYP 81 (221)
Q Consensus 78 ~~~~ 81 (221)
+.++
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8765
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.46 E-value=7.5e-07 Score=58.81 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=57.0
Q ss_pred cceEEecCCCChhhHHHHHHHHhcCC---cceEEEeccCC-CCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHH
Q 027634 3 TPVKVYGPPLSTAVCRVVACLLEKDV---EFQLISLNMAK-GDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICR 74 (221)
Q Consensus 3 ~~~~L~~~~~s~~~~~~~~~L~~~gi---~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 74 (221)
+++++|+.++||||.+++-+|...|| +|+.+.++-.. ......++.+.+...+||.+..+|..+.+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 57999999999999999999999999 78888776321 11113456667777899999999998888777666
No 124
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.45 E-value=2.3e-07 Score=54.62 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=48.6
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISL 66 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l 66 (221)
+++|+.++||+|.+++-+|...|++|+.+.++-.. ...+++.+.....++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999887642 1234455556788999999888653
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.27 E-value=3.8e-06 Score=54.41 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=54.2
Q ss_pred cceEEecC-----CCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHH
Q 027634 3 TPVKVYGP-----PLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRY 75 (221)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 75 (221)
.++.+|.. ++||+|.+++-+|...||+|+.+.|+-. .....++...+...++|.+..+|..+.+...+...
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~--~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l 87 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED--PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEM 87 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHH
Confidence 46788854 8899999999999999999998877421 11123444556677999999999988887777664
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.22 E-value=5e-06 Score=52.28 Aligned_cols=74 Identities=11% Similarity=0.093 Sum_probs=57.6
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCc--ceEEEeccCCCCC-CChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVE--FQLISLNMAKGDH-KKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCE 78 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~--~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 78 (221)
+++|+-++||+|.+++-+|...+++ |+.+.++...... ....+.+.....++|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888887643210 012244556677899999999999999888876553
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.15 E-value=9.8e-06 Score=51.79 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=55.6
Q ss_pred cceEEecC-----CCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHH
Q 027634 3 TPVKVYGP-----PLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYV 76 (221)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 76 (221)
.++++|.. ++||+|.+++-+|...|++|+.+.+.-. .....++.+.+...++|.+..+|..+.+...+....
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 36778855 6899999999999999999999987532 112234445566778999999999898888777643
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.94 E-value=6.2e-05 Score=45.72 Aligned_cols=55 Identities=25% Similarity=0.411 Sum_probs=47.2
Q ss_pred CChhhHHHHHHHHhcCCc---ceEEEeccCCCCCCChhhhhhCCCCCCCeEEc-CCeeEeehHHHHHHH
Q 027634 12 LSTAVCRVVACLLEKDVE---FQLISLNMAKGDHKKPDFLKIQPFGQVPAFQD-EKISLLESRAICRYV 76 (221)
Q Consensus 12 ~s~~~~~~~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~l~es~aI~~yL 76 (221)
.+|.|..+.+.|+..+.+ |+.+..+ +++ .+|.|++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~-------n~~---~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN-------NPW---LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC-------CCC---cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 488999999999999999 7766542 233 589999999998 889999999999998
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.84 E-value=5.8e-05 Score=61.82 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=54.2
Q ss_pred CcceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhh-h--------hCCCCCCCeEEcCCeeEeehHHH
Q 027634 2 ATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFL-K--------IQPFGQVPAFQDEKISLLESRAI 72 (221)
Q Consensus 2 ~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~-~--------~~p~~~vP~l~~~~~~l~es~aI 72 (221)
|.++++|+.++||+|.++.-+|...||+|+.+.|+-. . ...++. . .....+||++..||..+.+-..+
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~--~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD--V-KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC--h-hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 5689999999999999999999999999999888622 1 111221 1 23566899999999888887776
Q ss_pred HH
Q 027634 73 CR 74 (221)
Q Consensus 73 ~~ 74 (221)
..
T Consensus 78 ~~ 79 (410)
T PRK12759 78 MA 79 (410)
T ss_pred HH
Confidence 55
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.82 E-value=7.5e-05 Score=51.99 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=55.1
Q ss_pred ceEEecCC------CChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCC----CCCCCeEEcCCeeEeehHHHH
Q 027634 4 PVKVYGPP------LSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQP----FGQVPAFQDEKISLLESRAIC 73 (221)
Q Consensus 4 ~~~L~~~~------~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~vP~l~~~~~~l~es~aI~ 73 (221)
+++||..+ ++|+|.+++-+|+..+|+|+.+.|++.. ...+++.+... ..++|.+..+|..|.+...+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~ 78 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVL 78 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHH
Confidence 47899998 8999999999999999999999887642 12234444433 368999999999999887777
Q ss_pred HH
Q 027634 74 RY 75 (221)
Q Consensus 74 ~y 75 (221)
+.
T Consensus 79 ~L 80 (147)
T cd03031 79 RL 80 (147)
T ss_pred HH
Confidence 73
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.64 E-value=0.00022 Score=47.42 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=55.1
Q ss_pred cceEEecC-----CCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHH
Q 027634 3 TPVKVYGP-----PLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRY 75 (221)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 75 (221)
.++.+|.- +.||||.++.-+|...|++|..+.++-. ......+...+...++|-+..+|..|.+...+...
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 35777865 5899999999999999999998877532 11223455567788999999999999988777764
No 132
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.63 E-value=0.00023 Score=48.44 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhH
Q 027634 136 IKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSW 208 (221)
Q Consensus 136 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 208 (221)
..+..+++...|..||.++.......| ++|+-||.+|+.|+.+..+.. +.--|+|.+|++++++...+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkg----i~~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKG----IQWPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTT----S---HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccC----CcCCHHHHHHHHHHHHHcCC
Confidence 456778889999999999986555555 999999999999999888764 44447999999999886544
No 133
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00097 Score=43.48 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=58.1
Q ss_pred CcceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCC-CCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHH
Q 027634 2 ATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGD-HKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYV 76 (221)
Q Consensus 2 ~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 76 (221)
.+++.+|+-.+||+|.++.-+|...|+++..+.+|-.... .-...+.+..-..++|.+..+|..+.....+..+-
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 3578899999999999999999999999999998765321 11122333455668999999999999988887753
No 134
>PTZ00062 glutaredoxin; Provisional
Probab=97.31 E-value=0.00087 Score=49.40 Aligned_cols=70 Identities=10% Similarity=0.094 Sum_probs=53.2
Q ss_pred cceEEecC-----CCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHH
Q 027634 3 TPVKVYGP-----PLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICR 74 (221)
Q Consensus 3 ~~~~L~~~-----~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 74 (221)
.++.||.- |.||+|+++.-+|...||+|+...|.-. +.....+.+.+...++|.+..+|..|.+...+.+
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d--~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED--PDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 46778854 6899999999999999999998776522 2222344555667789999999998888766665
No 135
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.28 E-value=0.0012 Score=39.29 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=40.7
Q ss_pred ceEEecCCCChhhHHHHHHHHhc-----CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEe
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEK-----DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLL 67 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 67 (221)
++++|+.++||+|.++.-.|.+. +++|..+.+ .. .++.........+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~--~~----~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDA--AE----FPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEc--cc----CHhHHHHcCCcccCEEEECCEEEE
Confidence 47899999999999999888765 455555444 21 234444455567999998886554
No 136
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.20 E-value=0.0014 Score=44.36 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchh
Q 027634 137 KQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDS 207 (221)
Q Consensus 137 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 207 (221)
.+..+++...|..++.++..... +++++|+.||.+|+.|+.+..+.. ..--|+|..|++++++...
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vkg----i~~P~~V~~Y~~~~s~~t~ 124 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNLTLVKG----LVFPPKVKAYLERMSALTK 124 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhcC----CCCCHHHHHHHHHHHHHhC
Confidence 36677788889999998854344 456899999999999999888754 3434799999999987654
No 137
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00037 Score=57.42 Aligned_cols=119 Identities=21% Similarity=0.324 Sum_probs=79.4
Q ss_pred CCeeEeehHHHHHHHHHhCCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHH
Q 027634 62 EKISLLESRAICRYVCENYPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEE 141 (221)
Q Consensus 62 ~~~~l~es~aI~~yL~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (221)
++..+.++..+..|.+...... +. ||+.+ .++.+++.|.++... ....
T Consensus 44 d~~~l~~a~~~~~~~~~~~~~~-~~-lf~~~-~d~~~vd~w~~~s~~-----------------------------~~~~ 91 (712)
T KOG1147|consen 44 DGRKLNGATEPVVYSAALAKAD-PK-LFGNN-IDRSQVDHWVSFSST-----------------------------FSFD 91 (712)
T ss_pred ccccccCCccchhhhhhhcccC-Hh-HcCCc-ccHHHHHHHHHHhhh-----------------------------cchH
Confidence 3556666666677665332211 14 88877 789999999986432 1223
Q ss_pred HHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHHHH
Q 027634 142 KLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKKVV 212 (221)
Q Consensus 142 ~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 212 (221)
.+...+..+++.|.-..||+|.++|+||+++|+.++.-............+-++.+|++-....++..+++
T Consensus 92 ~~s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 92 EISSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred HHHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCcHhHHHHHHHHH
Confidence 45667788888888889999999999999999999874333210112345779999998555555555554
No 138
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.15 E-value=0.00061 Score=45.27 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=30.5
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEecc
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNM 37 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~ 37 (221)
++||+.+.||+|++++-+|.++||+|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999998753
No 139
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.06 E-value=0.00095 Score=43.88 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=30.0
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
+++|+.+.|++|++++-+|..+||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999998875
No 140
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0011 Score=44.38 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=31.1
Q ss_pred CCcceEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 1 MATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 1 m~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
|| +++|+.+.|.-|++++-+|+..||+|+.+.+.
T Consensus 1 ~~--itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 1 MM--ITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred Ce--EEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 55 99999999999999999999999999988663
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.02 E-value=0.0011 Score=45.40 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=30.4
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
+++|+.+.|++|++++-+|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 79999999999999999999999999998874
No 142
>PRK10026 arsenate reductase; Provisional
Probab=97.02 E-value=0.0012 Score=45.67 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=32.1
Q ss_pred CcceEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 2 ATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 2 ~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
|+.+++|+.+.|.-|++++-+|.++|++|+.+.+-
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 46799999999999999999999999999988763
No 143
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.96 E-value=0.0014 Score=43.85 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=30.2
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
+++|+.+.|+.|++++-+|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 79999999999999999999999999988874
No 144
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.75 E-value=0.0023 Score=42.92 Aligned_cols=32 Identities=31% Similarity=0.573 Sum_probs=29.6
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
++||+.+.||.|++++-+|.++||+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999988764
No 145
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.73 E-value=0.0028 Score=43.43 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=30.5
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
+++|+.+.|+.|++++-+|..+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 79999999999999999999999999999875
No 146
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.72 E-value=0.0026 Score=41.78 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=29.8
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
+++|+.+.|+.|++++-+|.++|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999998774
No 147
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.70 E-value=0.0028 Score=42.22 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=30.4
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
.++||+.+.|+.|++++-+|.++|++|+.+.+.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 379999999999999999999999999988764
No 148
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.68 E-value=0.0032 Score=43.14 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=30.8
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEecc
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNM 37 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~ 37 (221)
+++|+.+.|+.|++++-+|..+||+|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 799999999999999999999999999998753
No 149
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0077 Score=36.09 Aligned_cols=66 Identities=18% Similarity=0.398 Sum_probs=46.4
Q ss_pred CcceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCC--------CCCChhhhh--hCCCCCCCeEE-cCCeeEe
Q 027634 2 ATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKG--------DHKKPDFLK--IQPFGQVPAFQ-DEKISLL 67 (221)
Q Consensus 2 ~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~--------~~~~~~~~~--~~p~~~vP~l~-~~~~~l~ 67 (221)
|++.+||+...||-|.-..-.|+-.++.|+.+.|.-.-. -...++|-. .|.+--+|+|. ++|.++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 455699999999999999999999999999998752110 011344433 35555699998 4555444
No 150
>PRK10853 putative reductase; Provisional
Probab=96.25 E-value=0.0083 Score=40.26 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=29.8
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
+++|+.+.|.-|++++-+|+++|++|+.+.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 79999999999999999999999999988663
No 151
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.17 E-value=0.027 Score=35.92 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=49.4
Q ss_pred eEEecCCCCh------hhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhC----CCCCCCeEEcCCeeEeehHHHHH
Q 027634 5 VKVYGPPLST------AVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQ----PFGQVPAFQDEKISLLESRAICR 74 (221)
Q Consensus 5 ~~L~~~~~s~------~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~----p~~~vP~l~~~~~~l~es~aI~~ 74 (221)
++||+...++ .|++++.+|..+||+|+.+.|+... ....++.+.. +..++|-+..++..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 6777766654 4668889999999999999998642 2234444443 34789999999988888766655
No 152
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.12 E-value=0.0099 Score=40.36 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=30.5
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
.++||+.+.|.-|++++-+|.++||+|+.+.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 479999999999999999999999999998763
No 153
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.037 Score=35.37 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=49.8
Q ss_pred cceEEe-----cCCCChhhHHHHHHHHhcC-CcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHH
Q 027634 3 TPVKVY-----GPPLSTAVCRVVACLLEKD-VEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICR 74 (221)
Q Consensus 3 ~~~~L~-----~~~~s~~~~~~~~~L~~~g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 74 (221)
.++.|| .+|.|+||.++--+|...| ++|..+.| .....-...+...+-..++|=|-.+|..+.++..|.+
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnV--L~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~E 90 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDV--LQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVRE 90 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEee--ccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHH
Confidence 356677 3688999999999999999 66666655 2211112223334668899999999999999877665
No 154
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.77 E-value=0.094 Score=32.09 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=39.5
Q ss_pred ceEEecCCCChhhHHH----HHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeE
Q 027634 4 PVKVYGPPLSTAVCRV----VACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISL 66 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~----~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l 66 (221)
.+.+|. ++||.|..+ .-++.+.|+.++.+.++- .++. ...-...+|++..+|..+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a-~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEI-LEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHH-HHcCCCcCCEEEECCEEE
Confidence 367777 999999988 667888899888888861 1222 224466799999887444
No 155
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.75 E-value=0.017 Score=38.43 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=28.9
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEe
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISL 35 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v 35 (221)
+++|+.+.|.-|++++-+|.++|++|+.+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 5899999999999999999999999998765
No 156
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.71 E-value=0.018 Score=38.45 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=29.3
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
+++|+.+.|.-|++++-+|.++|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987653
No 157
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.49 E-value=0.084 Score=32.77 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=40.9
Q ss_pred ceEEecCCCChhhHHHHHHHHhcC--CcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCC
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKD--VEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEK 63 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~ 63 (221)
+++||+-+.|+.|..+.-.|.... .+++...||+.+ ++++....- ..+|||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHHhc-CCCCEEEEcC
Confidence 479999999999999999999654 567788888863 345555442 4799999766
No 158
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.23 E-value=0.089 Score=33.35 Aligned_cols=58 Identities=17% Similarity=0.073 Sum_probs=39.3
Q ss_pred ceEEecCCCChhhHHHHHHHHhc-----CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEe
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEK-----DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLL 67 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~ 67 (221)
.+.+|..++|++|..+.-++.+. +|.+..+.++- .++.........+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~------~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL------FQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh------CHHHHHHcCCccCCEEEECCEEEE
Confidence 47889999999999887766654 45555554432 244555566778999998875433
No 159
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.10 E-value=0.11 Score=31.88 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=39.5
Q ss_pred ceEEecCCCChhhHHHHHHHHh----cCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCe
Q 027634 4 PVKVYGPPLSTAVCRVVACLLE----KDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKI 64 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 64 (221)
.+++|+.++||+|..+.-.|+. .+..+....|+... .++.........+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 3789999999999988877653 34445666666542 234444455667999998764
No 160
>PHA02125 thioredoxin-like protein
Probab=94.14 E-value=0.28 Score=29.80 Aligned_cols=52 Identities=12% Similarity=0.300 Sum_probs=38.3
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE 62 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~ 62 (221)
+.+|+.++|+.|.++.-.|+ ++.++...|+... ..++........+|++..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~----~~~l~~~~~v~~~PT~~~g 53 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE----GVELTAKHHIRSLPTLVNT 53 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC----CHHHHHHcCCceeCeEECC
Confidence 78999999999998887775 4566666666432 3455566667789999843
No 161
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.39 E-value=0.23 Score=28.03 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=36.1
Q ss_pred eEEecCCCChhhHHHHHHHH-----hcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcC
Q 027634 5 VKVYGPPLSTAVCRVVACLL-----EKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDE 62 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~ 62 (221)
+.+|+..+|+.|.+.+-.+. ..++.+..+.++-... ........+...+|+++..
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~P~~~~~ 60 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA---LEKELKRYGVGGVPTLVVF 60 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH---HhhHHHhCCCccccEEEEE
Confidence 46788889999999999998 4555555555433211 1111235778899999843
No 162
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.22 E-value=0.39 Score=31.50 Aligned_cols=68 Identities=10% Similarity=0.189 Sum_probs=44.1
Q ss_pred ChhhHHHHHHHHhc---CCcceEEEeccCCCCCCChhhhhh--CCCCCCCeEE-cCC-------------eeEeehHHHH
Q 027634 13 STAVCRVVACLLEK---DVEFQLISLNMAKGDHKKPDFLKI--QPFGQVPAFQ-DEK-------------ISLLESRAIC 73 (221)
Q Consensus 13 s~~~~~~~~~L~~~---gi~~~~~~v~~~~~~~~~~~~~~~--~p~~~vP~l~-~~~-------------~~l~es~aI~ 73 (221)
||.|..+.-+|... .-..+++.|++.. ......+. -..+.+|+|+ .+| ..|.++..|+
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~ 100 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRIL 100 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHH
Confidence 77777777666543 2245666666653 22333332 2356799998 332 3789999999
Q ss_pred HHHHHhCCCC
Q 027634 74 RYVCENYPEK 83 (221)
Q Consensus 74 ~yL~~~~~~~ 83 (221)
+||+++|+-+
T Consensus 101 ~~La~r~g~p 110 (112)
T PF11287_consen 101 RYLAERHGFP 110 (112)
T ss_pred HHHHHHcCCC
Confidence 9999999844
No 163
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=93.05 E-value=0.87 Score=27.71 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=35.5
Q ss_pred ceEEecCCCChhhHHHHH----HHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEee
Q 027634 4 PVKVYGPPLSTAVCRVVA----CLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLE 68 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~----~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 68 (221)
.+++ ..+.||+|.++.- ++...|+.++...+ . ..++. .......+|+++.||...+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~----~~~~~-~~ygv~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--E----DFEEI-EKYGVMSVPALVINGKVVFV 62 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--T----THHHH-HHTT-SSSSEEEETTEEEEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--c----CHHHH-HHcCCCCCCEEEECCEEEEE
Confidence 4677 4556999996665 45556766655554 1 12333 55667789999998865443
No 164
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=90.97 E-value=0.28 Score=32.40 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=22.1
Q ss_pred ecCCCChhhHHHHHHHHhcCCcceEEEe
Q 027634 8 YGPPLSTAVCRVVACLLEKDVEFQLISL 35 (221)
Q Consensus 8 ~~~~~s~~~~~~~~~L~~~gi~~~~~~v 35 (221)
|+.+.|.-|++++-+|.++||+|+.+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~ 28 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDY 28 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEET
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehh
Confidence 7889999999999999999999998765
No 165
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=90.87 E-value=0.51 Score=33.80 Aligned_cols=39 Identities=28% Similarity=0.327 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCC---CcccCCC-cchhhhcchhhhhHHh
Q 027634 142 KLAKVLDVYEKRLGES---RFLAGDE-FSLADLSHLPNAHYLV 180 (221)
Q Consensus 142 ~~~~~l~~le~~L~~~---~~l~G~~-~t~aD~~~~~~l~~~~ 180 (221)
.-.+++..|++.|++. .|++|+. +|-+||.+++.|.-+.
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 3567888999999888 9999977 9999999999887654
No 166
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=90.60 E-value=0.58 Score=30.26 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=39.6
Q ss_pred ceEEecCCCChh------hHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhC---------CCCCCCeEEcCCeeEee
Q 027634 4 PVKVYGPPLSTA------VCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQ---------PFGQVPAFQDEKISLLE 68 (221)
Q Consensus 4 ~~~L~~~~~s~~------~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~---------p~~~vP~l~~~~~~l~e 68 (221)
.+++|....++. .+++..+|..++|+|+.+.|.... ....+..+.. +....|-+..++.-+.+
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e--~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDE--EARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-H--HHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCH--HHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 478887766553 458999999999999988876532 2223333322 23345677777777766
Q ss_pred hHHHHH
Q 027634 69 SRAICR 74 (221)
Q Consensus 69 s~aI~~ 74 (221)
-..+.+
T Consensus 80 ye~f~e 85 (99)
T PF04908_consen 80 YEDFEE 85 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 167
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.39 E-value=2.8 Score=31.30 Aligned_cols=69 Identities=10% Similarity=0.189 Sum_probs=50.6
Q ss_pred ceEEe-----cCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHH
Q 027634 4 PVKVY-----GPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICR 74 (221)
Q Consensus 4 ~~~L~-----~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 74 (221)
++.|| ..|.|++++.+.-.|...|++|....|--+ +.-.....+.+-..+.|=|-.+|.-+.+...|.+
T Consensus 140 ~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D--eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~ 213 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD--EELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKE 213 (227)
T ss_pred eEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC--HHHHHHhhhhcCCCCccceeECCEeccCcHHHHH
Confidence 45666 357799999999999999999988877332 1122233445778899999999988887655544
No 168
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=84.55 E-value=3.1 Score=35.95 Aligned_cols=56 Identities=21% Similarity=0.153 Sum_probs=38.5
Q ss_pred ceEEecCCCChhhHHHHH----HHHhc-CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCee
Q 027634 4 PVKVYGPPLSTAVCRVVA----CLLEK-DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKIS 65 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~----~L~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~ 65 (221)
.+++|..++||+|-.+.- +..+. +|..+.+.+... ++..+......||.++.||.+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~------~~~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF------PDLKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc------HHHHHhCCceecCEEEECCEE
Confidence 378888888888876554 33444 677776665432 566556668889999988744
No 169
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=83.94 E-value=10 Score=25.52 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=32.5
Q ss_pred eEEecCCCChhhHHHHHHHH----hcCCcceEEEeccCCCCCCC-----hhhhhhC----CCCCCCeEE--cCC
Q 027634 5 VKVYGPPLSTAVCRVVACLL----EKDVEFQLISLNMAKGDHKK-----PDFLKIQ----PFGQVPAFQ--DEK 63 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~----~~gi~~~~~~v~~~~~~~~~-----~~~~~~~----p~~~vP~l~--~~~ 63 (221)
+..|+.++||+|+.+.=.|. ..++++-.+.++........ .+|.... ....+|+++ .+|
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G 100 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG 100 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC
Confidence 55678999999998554443 34455555555432211111 1333332 234499998 455
No 170
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=82.34 E-value=3.5 Score=26.52 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=33.2
Q ss_pred eEEecCCCChhhHHHHHHH--------HhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACL--------LEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L--------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|++..-.+ ...+ .+....++....+.....+........+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 5678889999999876433 1122 45555666543221134555555567799887
No 171
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.08 E-value=1.6 Score=37.24 Aligned_cols=64 Identities=19% Similarity=0.063 Sum_probs=40.1
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEee
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLE 68 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 68 (221)
.+++|..+.||+|-.+.-+++..-+....+..++.++ ..-+++........||.+..++..+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~-~~~~~~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG-ALFQDEVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc-hhCHHHHHhcCCcccCEEEECCcEEEe
Confidence 3789999999999887776665443211222222221 223555666667899999988755444
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.00 E-value=1.7 Score=37.20 Aligned_cols=74 Identities=16% Similarity=0.024 Sum_probs=43.9
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeeh----HHHHHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLES----RAICRYVCE 78 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es----~aI~~yL~~ 78 (221)
.+++|..+.||+|-.+.-+++..-+.-..+...+.+. ..-+++........||.+..++..+.+. ..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~-~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG-ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc-hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 3789999999999887766655433211122222211 2346666666788999999887554442 234555544
No 173
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=80.11 E-value=2.2 Score=31.93 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHH
Q 027634 144 AKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKK 210 (221)
Q Consensus 144 ~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~ 210 (221)
...++.++..|.+..|.-|.+++-+|+.++..+.- ...-..+++..+|+..+.+.-+...
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~-------ep~s~~~v~~~~w~~~l~a~~~~~~ 69 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGV-------EPQSARLVNAERWYSKLEALLRLLA 69 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhccc-------CcchhhhhHHHHHHHHHHHHHHHHh
Confidence 45688899999999999999999999998877522 1123457788889888877655543
No 174
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=79.66 E-value=14 Score=24.31 Aligned_cols=59 Identities=15% Similarity=0.069 Sum_probs=38.3
Q ss_pred eEEecCCCChhhHHHHHHHHhcC---CcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCeeEe
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKD---VEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKISLL 67 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~g---i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~ 67 (221)
+..|+.++|+.|+.+.-.+.+.- -......|+..+ .++..+......+|++. .+|..+.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~----~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK----APFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc----CHHHHHHCCCccCCEEEEEECCEEEE
Confidence 45678899999998876665421 123556666542 34555556677899998 5665554
No 175
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=79.61 E-value=11 Score=23.88 Aligned_cols=57 Identities=12% Similarity=0.220 Sum_probs=34.7
Q ss_pred eEEecCCCChhhHHHHHHHHh----cCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCee
Q 027634 5 VKVYGPPLSTAVCRVVACLLE----KDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKIS 65 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 65 (221)
+.+|+.++|+.|+...-.+.. .+-.+....++.. ..+++....-...+|++. .+|..
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeE
Confidence 567788999999988766654 1112444555553 234554444456788887 44533
No 176
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=76.26 E-value=16 Score=22.88 Aligned_cols=70 Identities=9% Similarity=0.147 Sum_probs=43.6
Q ss_pred eEEecCCCChhhHHHHHHHHhc----CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCeeE------eehHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK----DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKISL------LESRAI 72 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~aI 72 (221)
+..|+.++|+.|+...=.+... +-++....|+... .+.+....-...+|++. .+|..+ .+...|
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE----NKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT----SHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhc----cchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 5677889999999887444332 2156666666642 35555556678899998 455222 233456
Q ss_pred HHHHHH
Q 027634 73 CRYVCE 78 (221)
Q Consensus 73 ~~yL~~ 78 (221)
.++|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666654
No 177
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=75.43 E-value=15 Score=22.12 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=32.6
Q ss_pred eEEecCCCChhhHHHHHHHHh-----cCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLE-----KDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+.+|+.++|+.|+...-.+.. .++.+- .++... ...+........+|++.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~--~i~~~~----~~~~~~~~~v~~~P~~~ 68 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFV--KVDVDE----NPELAEEYGVRSIPTFL 68 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEE--EEECCC----ChhHHHhcCcccccEEE
Confidence 567788899999988877766 444443 344332 24454455566799877
No 178
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=72.97 E-value=13 Score=24.55 Aligned_cols=53 Identities=11% Similarity=-0.017 Sum_probs=33.7
Q ss_pred eEEe-cCCCChhhHHHHHHHHhcCCc---ceEEEeccCCCCCCChhhhhhCCCCCCCeEEc
Q 027634 5 VKVY-GPPLSTAVCRVVACLLEKDVE---FQLISLNMAKGDHKKPDFLKIQPFGQVPAFQD 61 (221)
Q Consensus 5 ~~L~-~~~~s~~~~~~~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 61 (221)
+.++ +-++||+|+.++-++++..-. .+...++..+ .+++........+|++..
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~----~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE----DKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc----CHHHHHHcCCCcCCEEEE
Confidence 3444 668999999887777654322 2344455432 356666666778999983
No 179
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=70.68 E-value=8.4 Score=26.54 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=49.9
Q ss_pred cceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhh-------CCCCCCCeEEcCCeeEee---hHHH
Q 027634 3 TPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKI-------QPFGQVPAFQDEKISLLE---SRAI 72 (221)
Q Consensus 3 ~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~-------~p~~~vP~l~~~~~~l~e---s~aI 72 (221)
.+++.|+.|.|++|..-.-.|+.+|+..+.+..+ +|.++ .-.+.--+.+++|..+-+ ..+|
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~---------d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI 96 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETD---------DFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAI 96 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecC---------cHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHH
Confidence 3689999999999998888999999887777642 22222 123345677778865543 4789
Q ss_pred HHHHHHhC
Q 027634 73 CRYVCENY 80 (221)
Q Consensus 73 ~~yL~~~~ 80 (221)
.+.|++..
T Consensus 97 ~~ll~~~p 104 (149)
T COG3019 97 ARLLAEKP 104 (149)
T ss_pred HHHHhCCC
Confidence 99999887
No 180
>PHA03075 glutaredoxin-like protein; Provisional
Probab=70.10 E-value=10 Score=25.21 Aligned_cols=69 Identities=22% Similarity=0.394 Sum_probs=49.0
Q ss_pred CCcceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCC-eeEeehHHHHHHHHHh
Q 027634 1 MATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEK-ISLLESRAICRYVCEN 79 (221)
Q Consensus 1 m~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~-~~l~es~aI~~yL~~~ 79 (221)
|=..+.|++-|.|+-|+.+.-+|.+..=+|+..+|+... -| .-.|++=+|..++ ..+ -..+..||...
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS------fF---sK~g~v~~lg~d~~y~l--Inn~~~~lgne 69 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS------FF---SKDGQVKVLGMDKGYTL--INNFFKHLGNE 69 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee------ee---ccCCceEEEecccceeh--HHHHHHhhccc
Confidence 445689999999999999999998888899999998753 22 3456677776543 221 13456666654
Q ss_pred C
Q 027634 80 Y 80 (221)
Q Consensus 80 ~ 80 (221)
+
T Consensus 70 ~ 70 (123)
T PHA03075 70 Y 70 (123)
T ss_pred E
Confidence 4
No 181
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=64.13 E-value=19 Score=26.85 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=35.6
Q ss_pred eEEecCCCChhhHHHHHHHHhcCC---cceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDV---EFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEK 63 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~ 63 (221)
+++|+.++||+|..+.-++...-- ..+...+|.. ..++.........+|++..++
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEEEec
Confidence 567899999999988877765321 2333345543 235555556667799999543
No 182
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.83 E-value=11 Score=23.09 Aligned_cols=25 Identities=4% Similarity=0.177 Sum_probs=21.6
Q ss_pred ChhhHHHHHHHHhcCCcceEEEecc
Q 027634 13 STAVCRVVACLLEKDVEFQLISLNM 37 (221)
Q Consensus 13 s~~~~~~~~~L~~~gi~~~~~~v~~ 37 (221)
-+|++|+.-+|+..||+|+..+-..
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PSGI 39 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPSGI 39 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecCCC
Confidence 5699999999999999999887544
No 183
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=60.82 E-value=7.4 Score=26.11 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=15.0
Q ss_pred CCCCCeEE--cCCeeEeehHHHHHHHHHhCCCC
Q 027634 53 FGQVPAFQ--DEKISLLESRAICRYVCENYPEK 83 (221)
Q Consensus 53 ~~~vP~l~--~~~~~l~es~aI~~yL~~~~~~~ 83 (221)
....|-|+ -+|+.++|+.||++|+..-|...
T Consensus 33 d~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~ 65 (122)
T PF09635_consen 33 DESGPLLKDKKSGFELFEPNAIVRYLANDFEGQ 65 (122)
T ss_dssp S--S--EEE-S--S----HHHHHHHHTT--TTT
T ss_pred ccccceeeecCCceEEecccHHHHHHHhhcCCc
Confidence 33558885 34699999999999999887643
No 184
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=60.81 E-value=44 Score=21.76 Aligned_cols=55 Identities=9% Similarity=0.061 Sum_probs=32.8
Q ss_pred eEEecCCCChhhHHHHHHHHh-----cCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLE-----KDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEK 63 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~ 63 (221)
+..|+.++|+.|+...-.+.+ .+.......|+... .+.+........+|++. .+|
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----ERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----cHHHHHHcCCccCCEEEEEECC
Confidence 566788999999866533322 22234445555432 24444455667899887 455
No 185
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=58.52 E-value=42 Score=20.82 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=34.6
Q ss_pred eEEecCCCChhhHHHHHHHHhc----CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCe
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK----DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKI 64 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~ 64 (221)
+..|+.++|+.|++..-.|... +..+....++..+ .+++........+|++. .+|.
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~----~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE----LPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc----CHHHHHhcCCccccEEEEEECCE
Confidence 4667889999999887766542 3345555565432 34444433456699887 4553
No 186
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=56.97 E-value=26 Score=22.02 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=29.7
Q ss_pred eEEecCCCChhhHHHHHHHHh----cC--CcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLE----KD--VEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~----~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+.+|+-++|+.|+...-.+.. .. -.+....++... ...+.+........+|+++
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEE
Confidence 567788999999977432221 11 223344444432 1234454444556789887
No 187
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=55.40 E-value=46 Score=20.65 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=34.9
Q ss_pred eEEecCCCChhhHHHHHHHHhcCC----cceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCe
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDV----EFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKI 64 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~ 64 (221)
+..|+.++|+.|++..-.+....- .+....|+... .+.+........+|++. .+|.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA----QPQIAQQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC----CHHHHHHcCCCCCCEEEEEeCCE
Confidence 456788999999977666654221 24445565542 35555555567799998 4553
No 188
>PHA02278 thioredoxin-like protein
Probab=54.94 E-value=56 Score=21.15 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=33.5
Q ss_pred eEEecCCCChhhHHHHHHHHhc----CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCee
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK----DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKIS 65 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 65 (221)
+.-|+-++|+.|+.+.=.+... ........++....+...+++....-...+|++. .+|..
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~ 84 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQL 84 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEE
Confidence 4556889999999766444332 2222344555542111124444445566789988 45533
No 189
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=54.50 E-value=37 Score=22.13 Aligned_cols=72 Identities=14% Similarity=0.021 Sum_probs=40.1
Q ss_pred EecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCC----hhhhhhCCCCCCCeEEcCCe-eEeehHHHHHHHHHh
Q 027634 7 VYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKK----PDFLKIQPFGQVPAFQDEKI-SLLESRAICRYVCEN 79 (221)
Q Consensus 7 L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~----~~~~~~~p~~~vP~l~~~~~-~l~es~aI~~yL~~~ 79 (221)
|+|...||.|.+..-.+......-....++........ ......+....+-+ ..+|. .+.++.|+..-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 46778899999888777777653333334442111000 01111122333444 55554 999999999875554
No 190
>PTZ00051 thioredoxin; Provisional
Probab=54.04 E-value=51 Score=20.48 Aligned_cols=52 Identities=8% Similarity=0.188 Sum_probs=31.6
Q ss_pred eEEecCCCChhhHHHHHHHHhc---CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK---DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~---gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|+...-.+... ...+....++... ...+........+|++.
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 76 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE----LSEVAEKENITSMPTFK 76 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc----hHHHHHHCCCceeeEEE
Confidence 4577889999999776555442 2224445555432 24444445566789887
No 191
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.42 E-value=36 Score=25.71 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=13.9
Q ss_pred CCcceEEecCCCChhhHH
Q 027634 1 MATPVKVYGPPLSTAVCR 18 (221)
Q Consensus 1 m~~~~~L~~~~~s~~~~~ 18 (221)
|+-++.+|+-..||+|..
T Consensus 4 ~~i~I~v~sD~vCPwC~i 21 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYI 21 (225)
T ss_pred ceEEEEEEeCCcCchhhc
Confidence 344678888899999983
No 192
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.76 E-value=1.2e+02 Score=24.16 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=53.8
Q ss_pred cceEEecCCCChhhHHHHHHHH----hcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCeeE------eehH
Q 027634 3 TPVKVYGPPLSTAVCRVVACLL----EKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKISL------LESR 70 (221)
Q Consensus 3 ~~~~L~~~~~s~~~~~~~~~L~----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l------~es~ 70 (221)
+-+.+|+.|+|+.|....=.|+ +.+=.|.+..|+.+. .+......-...+|++. .+|..| -.-.
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~----~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPes 120 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA----EPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPES 120 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc----chhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHH
Confidence 3477889999999987665544 345568888888753 46777777788899887 454333 2335
Q ss_pred HHHHHHHHhCCC
Q 027634 71 AICRYVCENYPE 82 (221)
Q Consensus 71 aI~~yL~~~~~~ 82 (221)
.|-++|++..+.
T Consensus 121 qlr~~ld~~~~~ 132 (304)
T COG3118 121 QLRQFLDKVLPA 132 (304)
T ss_pred HHHHHHHHhcCh
Confidence 788999988775
No 193
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=52.57 E-value=21 Score=25.18 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=29.0
Q ss_pred CCcceEEecCCCChhhHHHHHHHHhcCCcceEE
Q 027634 1 MATPVKVYGPPLSTAVCRVVACLLEKDVEFQLI 33 (221)
Q Consensus 1 m~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~ 33 (221)
||..+.|.+.+.|+-+...+.+.+..|++|-..
T Consensus 1 ~~~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 1 MTQPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 888999999999999999999999999986443
No 194
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=52.55 E-value=1e+02 Score=23.68 Aligned_cols=67 Identities=19% Similarity=0.089 Sum_probs=40.1
Q ss_pred ehHHHHHHHHHhCCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHH
Q 027634 68 ESRAICRYVCENYPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVL 147 (221)
Q Consensus 68 es~aI~~yL~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (221)
|...|-..+.++.... .-|+|++..+.|...+.---.. ...+... --..+..++++...+
T Consensus 5 E~qLI~~lf~RL~~ae----~~prD~eAe~lI~~~~~~qP~A----~Y~laQ~------------vlvQE~AL~~a~~ri 64 (247)
T PF09849_consen 5 ERQLIDDLFSRLKQAE----AQPRDPEAEALIAQALARQPDA----PYYLAQT------------VLVQEQALKQAQARI 64 (247)
T ss_pred HHHHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHhCCch----HHHHHHH------------HHHHHHHHHHHHHHH
Confidence 3455666666665544 4488988888877766532221 1111111 113567778888888
Q ss_pred HHHHHHh
Q 027634 148 DVYEKRL 154 (221)
Q Consensus 148 ~~le~~L 154 (221)
+.||..|
T Consensus 65 ~eLe~ql 71 (247)
T PF09849_consen 65 QELEAQL 71 (247)
T ss_pred HHHHHHH
Confidence 8888886
No 195
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=50.28 E-value=19 Score=23.76 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=21.3
Q ss_pred CCeEE-cCCeeEeehHHHHHHHHHhCC
Q 027634 56 VPAFQ-DEKISLLESRAICRYVCENYP 81 (221)
Q Consensus 56 vP~l~-~~~~~l~es~aI~~yL~~~~~ 81 (221)
+|.+. .+|.++++|..|+++....+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 45555 778999999999999988765
No 196
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=49.26 E-value=44 Score=21.29 Aligned_cols=54 Identities=15% Similarity=-0.009 Sum_probs=30.5
Q ss_pred eEEecCCCChhhHHHHHHHHhc----C-CcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCC
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK----D-VEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEK 63 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~----g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~ 63 (221)
+..|+.++|+.|+...-.+... + -......++.+ .++.....--..+|++. .+|
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECC
Confidence 4567889999999776555432 1 11233344443 23444444466788776 445
No 197
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=48.68 E-value=83 Score=23.35 Aligned_cols=52 Identities=10% Similarity=0.094 Sum_probs=32.2
Q ss_pred eEEecC---CCChhhHHHHHHHHhcC-----CcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGP---PLSTAVCRVVACLLEKD-----VEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~---~~s~~~~~~~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+.+|+. +|||.|..+.=.+++.. +.+..+.++.+ ..++.....-...+|++.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~----~~~~l~~~~~V~~~Pt~~ 82 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP----EDKEEAEKYGVERVPTTI 82 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc----ccHHHHHHcCCCccCEEE
Confidence 566777 89999998777665542 33333333332 234555555577799998
No 198
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=48.60 E-value=81 Score=21.14 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=27.1
Q ss_pred CCChhhHHHHHHH----HhcCCcceEEEeccCC---CCCCChhhhhhCCCC-CCCeEE
Q 027634 11 PLSTAVCRVVACL----LEKDVEFQLISLNMAK---GDHKKPDFLKIQPFG-QVPAFQ 60 (221)
Q Consensus 11 ~~s~~~~~~~~~L----~~~gi~~~~~~v~~~~---~~~~~~~~~~~~p~~-~vP~l~ 60 (221)
+|||.|+.+.-.+ ....-.+..+.|+..+ |......+....-.. .+|++.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~ 95 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLL 95 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEE
Confidence 7999999665433 3333235556666543 222234444322233 699988
No 199
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.40 E-value=67 Score=26.27 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=66.7
Q ss_pred CCeEEcCCeeEeehHHHHHHHHHhCCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhh---cccCCCCCC
Q 027634 56 VPAFQDEKISLLESRAICRYVCENYPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLAL---APRMNIKQD 132 (221)
Q Consensus 56 vP~l~~~~~~l~es~aI~~yL~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ 132 (221)
.+.+.+.+..+.|+.+|+.-|...-..- .-+-+..++.++-.|+......-.+.-.-..+...+ ....+...+
T Consensus 98 w~~~~~~dQ~~VEaa~la~aL~~a~~~l----W~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~G~~~d 173 (361)
T PF10022_consen 98 WGFIGDYDQRLVEAASLALALLRAPEWL----WDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKVGEEYD 173 (361)
T ss_pred cCCcccchhhHhHHHHHHHHHHHCHHHH----HhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHcCCCCc
Confidence 4455555688999999999888765421 225677788888888876554433322222222211 112234444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhh
Q 027634 133 EGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAH 177 (221)
Q Consensus 133 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~ 177 (221)
+ ..+...|+.+|+.-.+.+|+.-+.-.-.|....-+++
T Consensus 174 ~-------~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYns~aih 211 (361)
T PF10022_consen 174 E-------ERIDYDLERIEEWYLGDGWYSDGPEFQFDYYNSWAIH 211 (361)
T ss_pred H-------HHHHHHHHHHHHHhccCCccccCCccCCcchHHHHHH
Confidence 4 4566778888887777777765555677776543433
No 200
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=44.18 E-value=42 Score=21.85 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=33.4
Q ss_pred eEEecCCCChhhHHHHHHHHhcCC---cceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCeeEe
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDV---EFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKISLL 67 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~ 67 (221)
+..|+.++|+.|+.+.-.++..-- ......|+..+ . .+.+..-...+|++. .+|..+.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEEE
Confidence 456788999999977655543211 12344555432 1 443444456799988 4564443
No 201
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=42.28 E-value=87 Score=20.65 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=13.2
Q ss_pred eEEecCCCChhhHHHH
Q 027634 5 VKVYGPPLSTAVCRVV 20 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~ 20 (221)
+..|+.++|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 5677889999999875
No 202
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=41.94 E-value=58 Score=21.02 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=31.1
Q ss_pred ceEEecCCCChhhHHHHHHHHh-----cCCcceEEEeccCCCCCCChhhh-hhCCCCCCCeEE
Q 027634 4 PVKVYGPPLSTAVCRVVACLLE-----KDVEFQLISLNMAKGDHKKPDFL-KIQPFGQVPAFQ 60 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~-----~gi~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~l~ 60 (221)
-+..|+.++|+.|++..-.+.. .+..+....|+.... ...+. .......+|++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---QREFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---chhhHHhhcCCCcCCEEE
Confidence 3667889999999976544433 233345555555421 12222 234566789886
No 203
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.29 E-value=42 Score=26.12 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=44.4
Q ss_pred hhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhh----CCCCCCCeEEcCCeeEeehHHHHHH
Q 027634 15 AVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKI----QPFGQVPAFQDEKISLLESRAICRY 75 (221)
Q Consensus 15 ~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~----~p~~~vP~l~~~~~~l~es~aI~~y 75 (221)
.|..||.+|+-.+|.|+...|.|... ..+++..+ .-...+|.+..+|.-|.+..-|.+.
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 57799999999999999999998742 23444332 1345699888999888888777764
No 204
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=41.20 E-value=41 Score=25.85 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=16.5
Q ss_pred eEEecCCCChhhHHHHHHHH
Q 027634 5 VKVYGPPLSTAVCRVVACLL 24 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~ 24 (221)
+.+|..+.||||++..-.+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 66788899999999877654
No 205
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=41.09 E-value=90 Score=19.57 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=31.4
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCc----ceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVE----FQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|+...-.+....-. +....|+..+ .+.+.+......+|++.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLCRSQGVNSYPSLY 77 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHHHHcCCCccCEEE
Confidence 5567889999999766555333222 4445566542 24444444466789886
No 206
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=41.05 E-value=34 Score=21.88 Aligned_cols=53 Identities=8% Similarity=0.066 Sum_probs=29.4
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCc---ceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVE---FQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|++..-.+++..-. .....|+.. ...+.+....-...+|++.
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~---~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES---SIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC---CCCHHHHHhcCCeecCEEE
Confidence 5667889999999777555433211 223334332 1223443434456688877
No 207
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=40.38 E-value=24 Score=20.60 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=19.8
Q ss_pred EEecCCCChhhHHHHHHHHhcCCcceEEEe
Q 027634 6 KVYGPPLSTAVCRVVACLLEKDVEFQLISL 35 (221)
Q Consensus 6 ~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v 35 (221)
+||......-+..++-.|+..||++....-
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S-
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECC
Confidence 677777777889999999999999876644
No 208
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=40.21 E-value=88 Score=19.21 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=30.8
Q ss_pred eEEecCCCChhhHHHHHHHHhc----CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK----DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|+...-.+... +-......++... .+.+....-...+|++.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~P~~~ 73 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE----NPDIAAKYGIRSIPTLL 73 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC----CHHHHHHcCCCcCCEEE
Confidence 4566788899999776555432 2235555555432 34444444455789877
No 209
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=39.58 E-value=1.3e+02 Score=21.07 Aligned_cols=58 Identities=9% Similarity=0.143 Sum_probs=33.5
Q ss_pred eEEecCCCChhhHHHHHHHHhc-----CCcceEEEeccCCCCCCChhhhhhCCC------CCCCeEE--cCCeeE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK-----DVEFQLISLNMAKGDHKKPDFLKIQPF------GQVPAFQ--DEKISL 66 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~------~~vP~l~--~~~~~l 66 (221)
+..|+.++|+.|+...-.++.. +-.++...|+..+. ++..+..-. .++|++. .+|..+
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~----~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF----PNVAEKFRVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC----HHHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence 5678889999999776544332 22355566666432 333332222 3489887 556444
No 210
>PRK15371 effector protein YopJ; Provisional
Probab=39.46 E-value=1e+02 Score=24.32 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHh
Q 027634 138 QNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEIS 203 (221)
Q Consensus 138 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~ 203 (221)
-..+.+..+++.||..+.++.|+ -+.++..|+-..+.+............+.-+..-.++++.++
T Consensus 23 ~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~~N~r~P~LNL~~f~s~~~f~~aik 87 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQANNKYPEMNLKLVTSPLDLSIEIK 87 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHHHhccCCCCCeeecCCHHHHHHHHH
Confidence 45677999999999999988888 457999999999998877654321223444445566666655
No 211
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=39.31 E-value=71 Score=20.74 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=23.1
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLIS 34 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~ 34 (221)
-.|......|....++.+.+++|||.+...
T Consensus 58 ~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 58 KVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 345566677888889999999999977664
No 212
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=39.18 E-value=44 Score=24.39 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=18.2
Q ss_pred ceEEecCCCChhhHHHHHHHHh
Q 027634 4 PVKVYGPPLSTAVCRVVACLLE 25 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~ 25 (221)
.+.+|..+.||+|++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 3667888999999999888874
No 213
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=38.61 E-value=61 Score=21.44 Aligned_cols=39 Identities=8% Similarity=-0.024 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCcchhhhc
Q 027634 130 KQDEGVIKQNEEKLAKVLDVYEKRLGESRFLAGDEFSLADLS 171 (221)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~ 171 (221)
.-+.+.+-...+........||+.|++ ..+.++|-.-+.
T Consensus 56 ~L~~~~R~~iirE~Daiv~DLeEVLa~---V~~~~aT~eQ~~ 94 (113)
T PF12290_consen 56 ELEFSQRFQIIREADAIVYDLEEVLAS---VWNQKATNEQIA 94 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCCHHHHH
Confidence 445566777778888899999999875 223455554443
No 214
>PRK09381 trxA thioredoxin; Provisional
Probab=37.75 E-value=1.1e+02 Score=19.51 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=33.4
Q ss_pred eEEecCCCChhhHHHHHHHHh----cCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCee
Q 027634 5 VKVYGPPLSTAVCRVVACLLE----KDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKIS 65 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 65 (221)
+..|+.++||.|+...-.++. .+-.+....++... .+.+........+|++. .+|..
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~G~~ 87 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAPKYGIRGIPTLLLFKNGEV 87 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHHhCCCCcCCEEEEEeCCeE
Confidence 456788899999977644432 22235555666543 23444444567799887 45543
No 215
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.70 E-value=2.4e+02 Score=23.43 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHH
Q 027634 70 RAICRYVCENYPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDV 149 (221)
Q Consensus 70 ~aI~~yL~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (221)
...+++|.++++.+ +....+..-...+.|+..+...+..... ....++..++..+++.+.+..
T Consensus 218 ~~~a~~L~~~fGip----~~~~~p~G~~~t~~~l~~ia~~~g~~~~-------------~~~~~~~i~~e~~~~~~~l~~ 280 (410)
T cd01968 218 IYLARKMEEKYGIP----YIEVSFYGIRDTSKSLRNIAELLGDEEL-------------IERTEELIAREEARLRPELAP 280 (410)
T ss_pred HHHHHHHHHHhCCC----eEecCcCcHHHHHHHHHHHHHHhCCchh-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999866 3333344455566666544433322100 011233455556667777777
Q ss_pred HHHHhCCCCcccCCCcchh
Q 027634 150 YEKRLGESRFLAGDEFSLA 168 (221)
Q Consensus 150 le~~L~~~~~l~G~~~t~a 168 (221)
.-..|.+.+..+...++.+
T Consensus 281 ~~~~l~gkrv~i~~~~~~~ 299 (410)
T cd01968 281 YRARLEGKKAALYTGGVKS 299 (410)
T ss_pred HHHHhCCCEEEEEcCCchH
Confidence 7777887766554444443
No 216
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=37.48 E-value=66 Score=21.09 Aligned_cols=54 Identities=4% Similarity=0.035 Sum_probs=28.5
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCc-------ceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVE-------FQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~-------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|+...-.+....-. +....++... ...+.+.+..-...+|++.
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--EENVALCRDFGVTGYPTLR 83 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--hhhHHHHHhCCCCCCCEEE
Confidence 5667889999998665554332221 2222233211 1223444444456688887
No 217
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=37.14 E-value=53 Score=23.52 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=25.7
Q ss_pred ceEEecCCCChhhHH----HHHHHHhc-CCcceEEEeccC
Q 027634 4 PVKVYGPPLSTAVCR----VVACLLEK-DVEFQLISLNMA 38 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~----~~~~L~~~-gi~~~~~~v~~~ 38 (221)
.+++|+...||||.. ++-+++.. ++.++..++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 378899999999984 44445555 788888887664
No 218
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=36.37 E-value=57 Score=20.24 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=30.1
Q ss_pred eEEecCCCChhhHHHHHHHHh-----cCC-cceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLE-----KDV-EFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~-----~gi-~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+.+|+.++|+.|+...-.+.. .+- .+....++.. ..+.+........+|++.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT----AEKDLASRFGVSGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc----chHHHHHhCCCCcCCEEE
Confidence 678889999999875444433 221 1333334432 234554445567799885
No 219
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=36.35 E-value=53 Score=20.89 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=30.8
Q ss_pred eEEecCCCChhhHHHHHHHHhc----CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK----DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|+...-.+... +-.+....++.... ....+........+|++.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~--~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED--KNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcc--ccHHHHHHcCCCcCCEEE
Confidence 5677889999998765444332 11234444554421 134444444566789887
No 220
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=36.02 E-value=97 Score=22.46 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhCCCCcccCCCcchhhhcchhhhhHHhhccccccccccCchHHHHHHHHhc
Q 027634 141 EKLAKVLDVYEKRLGESRFLAGDEFSLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISN 204 (221)
Q Consensus 141 ~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 204 (221)
+.+..+.+.++..+.++.|+ .+.++.-|+...+.+............+.-+..-.+.++.+.+
T Consensus 2 ~~L~~y~~~~~~~~~~g~~~-~~~~~~~D~~~lp~lv~~~N~r~P~LnL~~~~~~~~~~~~i~~ 64 (177)
T PF03421_consen 2 ESLKEYIERLEDDIKNGSWP-NESYAELDIKMLPALVAAENARYPGLNLHFFDSPEDFVQAIKE 64 (177)
T ss_pred hHHHHHHHHHHHHHHhCCCC-CcchhhhhHHHHHHHHHHHhhcCCCCceEEcCCcHHHHHHHHh
Confidence 45778889999999988888 6789999999999998776543212224444455666665543
No 221
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=35.45 E-value=40 Score=19.49 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=16.2
Q ss_pred ceEEec----CCCChhhHHHHHHHHh
Q 027634 4 PVKVYG----PPLSTAVCRVVACLLE 25 (221)
Q Consensus 4 ~~~L~~----~~~s~~~~~~~~~L~~ 25 (221)
+++||- -+.|.+|.|+-.+|..
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 356663 4568899999988865
No 222
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=35.22 E-value=38 Score=21.78 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=21.2
Q ss_pred ceEEecCCCChhhHHHHHHHHh-----cCC--cceEEEeccCC
Q 027634 4 PVKVYGPPLSTAVCRVVACLLE-----KDV--EFQLISLNMAK 39 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~-----~gi--~~~~~~v~~~~ 39 (221)
.+.+|+.++||+|++..-.+.. ..+ .+..+.++...
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDD 50 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHS
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCC
Confidence 3567788999999988655542 111 45666666643
No 223
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=35.17 E-value=1.1e+02 Score=19.27 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=30.8
Q ss_pred eEEecCCCChhhHHHHHHHHhcCC----cceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDV----EFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|++..=.+...-- ......++... .+++........+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK----YESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc----hHHHHHHcCCCcccEEE
Confidence 566788999999876544433221 23444555432 24444444566788887
No 224
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=35.05 E-value=1.4e+02 Score=20.07 Aligned_cols=65 Identities=8% Similarity=0.050 Sum_probs=35.5
Q ss_pred eEEecCCCChhhHHHHH-HHHh------cCCcceEEEeccCCCCCCChhhhh----hCCCCCCCeEE---cCCeeEeeh
Q 027634 5 VKVYGPPLSTAVCRVVA-CLLE------KDVEFQLISLNMAKGDHKKPDFLK----IQPFGQVPAFQ---DEKISLLES 69 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~-~L~~------~gi~~~~~~v~~~~~~~~~~~~~~----~~p~~~vP~l~---~~~~~l~es 69 (221)
+..++.++|++|++.-- .+.. .+-.|..+.+|..+.......+.+ .+-.+-+|+++ .+|..+..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 34468899999997742 2222 233577777776542111111211 22345688887 345666664
No 225
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=34.60 E-value=97 Score=22.29 Aligned_cols=59 Identities=8% Similarity=-0.022 Sum_probs=33.7
Q ss_pred eEEecCCCChhhHHHHHHH---HhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCeeEee
Q 027634 5 VKVYGPPLSTAVCRVVACL---LEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKISLLE 68 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L---~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~e 68 (221)
+..|+.++|+.|+.+--.| ...--....+.|+... . ......+...+|++. -+|..+..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~-~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T-GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h-hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 4456779999998654333 2222234555565542 1 344456677899988 46655443
No 226
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=34.05 E-value=63 Score=24.50 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=17.9
Q ss_pred ceEEecCCCChhhHHHHHHHHh
Q 027634 4 PVKVYGPPLSTAVCRVVACLLE 25 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~ 25 (221)
.+.+|..+.||||++..--+..
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHH
Confidence 3678889999999998766655
No 227
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=33.36 E-value=1.1e+02 Score=25.92 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=36.8
Q ss_pred EEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCC-----eeEeehH
Q 027634 6 KVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEK-----ISLLESR 70 (221)
Q Consensus 6 ~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~-----~~l~es~ 70 (221)
.++..-.|...+.+..+|+...++|+...+ .-.|.+|+|.+++ .+|.|..
T Consensus 64 VFvES~YS~lGq~Iv~ILes~Rf~y~~ei~---------------~~kg~lP~LT~~~kGRy~lII~ENl 118 (487)
T PF12062_consen 64 VFVESQYSQLGQDIVAILESNRFKYKVEIA---------------SGKGDLPVLTDNDKGRYSLIIFENL 118 (487)
T ss_pred EEEeeccchhhHHHHHHHHhceeeEEEEEc---------------cCCCCCCccccCCCCcEEEEEehhH
Confidence 444555688999999999999999987765 2256789998664 5566653
No 228
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=33.25 E-value=83 Score=22.31 Aligned_cols=32 Identities=6% Similarity=0.129 Sum_probs=21.7
Q ss_pred cCCCChhhH-------HHHHHHHhcCCcceEEEeccCCC
Q 027634 9 GPPLSTAVC-------RVVACLLEKDVEFQLISLNMAKG 40 (221)
Q Consensus 9 ~~~~s~~~~-------~~~~~L~~~gi~~~~~~v~~~~~ 40 (221)
+-.+||.|+ +..-.+...+-|++.+.|+.+..
T Consensus 41 sA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 41 SAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred EEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 345577666 44455666677899999987653
No 229
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=32.82 E-value=70 Score=23.09 Aligned_cols=34 Identities=9% Similarity=-0.140 Sum_probs=30.7
Q ss_pred CCcceEEecCCCChhhHHHHHHHHhcCCcceEEE
Q 027634 1 MATPVKVYGPPLSTAVCRVVACLLEKDVEFQLIS 34 (221)
Q Consensus 1 m~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~ 34 (221)
|++++.|.++..++-|-.-+.+....|.+|-+..
T Consensus 1 ~~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 1 RNMNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred CCccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 5778999999999999999999999999987664
No 230
>PRK09266 hypothetical protein; Provisional
Probab=32.71 E-value=42 Score=25.88 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=39.2
Q ss_pred HHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHHhCC
Q 027634 22 CLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCENYP 81 (221)
Q Consensus 22 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~~ 81 (221)
.+...|++.+...+++.+-....+-|.--+-.|-+||-..++..+.+...|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 455668999998887643222223333334468899999888777655677777777664
No 231
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=32.17 E-value=1.1e+02 Score=18.43 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=35.1
Q ss_pred ceEEecCCCChhhHHHHH----HHH-hcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 4 PVKVYGPPLSTAVCRVVA----CLL-EKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~----~L~-~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
.++||-...+|.|+++.- .++ +.+-+|+...||..+ .|+..+....--+|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~----~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK----QPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc----CHhHHhhCCEEEechhh
Confidence 367888888787775433 233 346789999999864 45555555555577776
No 232
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=31.68 E-value=76 Score=23.41 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=24.4
Q ss_pred cceEEecCCCChhhHHH----HHHHHhcCCcceEEEecc
Q 027634 3 TPVKVYGPPLSTAVCRV----VACLLEKDVEFQLISLNM 37 (221)
Q Consensus 3 ~~~~L~~~~~s~~~~~~----~~~L~~~gi~~~~~~v~~ 37 (221)
+++.+|+...||||.-. .-++...+++.+.+++.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 46889999999998744 344455667666666644
No 233
>PRK13947 shikimate kinase; Provisional
Probab=31.47 E-value=69 Score=22.49 Aligned_cols=32 Identities=6% Similarity=-0.158 Sum_probs=27.4
Q ss_pred CcceEEecCCCChhhHHHHHHHHhcCCcceEE
Q 027634 2 ATPVKVYGPPLSTAVCRVVACLLEKDVEFQLI 33 (221)
Q Consensus 2 ~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~ 33 (221)
|..+.|.+.+.|+-+...+.+.+..|++|-..
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45699999999999999999999999887443
No 234
>PRK14368 Maf-like protein; Provisional
Probab=31.24 E-value=73 Score=23.45 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=27.1
Q ss_pred CCcceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCC
Q 027634 1 MATPVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAK 39 (221)
Q Consensus 1 m~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~ 39 (221)
||.+.+|.--..||+ |..+ |...|++|+.+..++++
T Consensus 1 ~~~~~~lILAS~Spr--R~eL-L~~~g~~f~v~~~~iDE 36 (193)
T PRK14368 1 MMANSPIVLASASPR--RSEL-LASAGIEFDVVPADIPE 36 (193)
T ss_pred CCCCCcEEEeCCCHH--HHHH-HHHCCCCeEEEcCCCCC
Confidence 788888887777764 3333 77899999988777765
No 235
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=31.06 E-value=1.2e+02 Score=19.26 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=30.0
Q ss_pred eEEecCCCChhhHHHHHHHHhcC---CcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKD---VEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~g---i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|+...=.+.... -......|+.+... ....+.....-..+|++.
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-~~~~l~~~~~V~~~Pt~~ 76 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-STMELCRREKIIEVPHFL 76 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-HHHHHHHHcCCCcCCEEE
Confidence 45567889999986654444321 12344555543210 112444444556689877
No 236
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=31.04 E-value=1.6e+02 Score=19.42 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=28.9
Q ss_pred eEEecCCCChhhHHHHHHHHhcC----CcceEEEeccCCCCCCChhhhhhCCCC-CCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKD----VEFQLISLNMAKGDHKKPDFLKIQPFG-QVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~g----i~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~l~ 60 (221)
+..|+-++|+.|++..-.+.... ..-..+.+++..... +.....+..| .+|++.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~~~g~~vPt~~ 81 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFSPDGGYIPRIL 81 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcccCCCccceEE
Confidence 45578899999998765554421 122334444443211 1112334444 489988
No 237
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=31.03 E-value=1.4e+02 Score=18.66 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=30.9
Q ss_pred eEEecCCCChhhHHHHHHHHhc-----CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK-----DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|+...=.+... +..+....++... .+.+........+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----EPGLSGRFFVTALPTIY 76 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----CHhHHHHcCCcccCEEE
Confidence 5677889999998765444322 3334445555432 23444444566788887
No 238
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=30.07 E-value=76 Score=19.20 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=17.2
Q ss_pred eEEecCCCChhhHHHHHHHHhc
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK 26 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~ 26 (221)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678889999999887777653
No 239
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=29.87 E-value=90 Score=16.19 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=20.2
Q ss_pred CCCCCCeEEcCCeeEeehHHHHHHHH
Q 027634 52 PFGQVPAFQDEKISLLESRAICRYVC 77 (221)
Q Consensus 52 p~~~vP~l~~~~~~l~es~aI~~yL~ 77 (221)
-.|.+|....++..+.....|.+|++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 35778887777788888888888875
No 240
>PRK13949 shikimate kinase; Provisional
Probab=29.84 E-value=79 Score=22.50 Aligned_cols=33 Identities=12% Similarity=-0.062 Sum_probs=27.9
Q ss_pred CcceEEecCCCChhhHHHHHHHHhcCCcceEEE
Q 027634 2 ATPVKVYGPPLSTAVCRVVACLLEKDVEFQLIS 34 (221)
Q Consensus 2 ~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~ 34 (221)
|.++.|.+.+.|+-+.-.+.+.+..|++|-...
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 467999999999999999999999998765543
No 241
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=29.55 E-value=1.3e+02 Score=19.18 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=30.9
Q ss_pred eEEecCCCChhhHHHHHHHHhcC------C----cceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKD------V----EFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~g------i----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|++..-.+...- . .+....|+... .+++....-...+|++.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~----~~~l~~~~~v~~~Ptl~ 83 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK----ESDIADRYRINKYPTLK 83 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC----CHHHHHhCCCCcCCEEE
Confidence 45778899999997765554221 1 13334454432 24454445566789887
No 242
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=29.25 E-value=99 Score=19.23 Aligned_cols=53 Identities=8% Similarity=0.104 Sum_probs=30.8
Q ss_pred eEEecCCCChhhHHHHHHHHh----cC--CcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLE----KD--VEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~----~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|+...-.+.. .+ -.+....++.... .+.+........+|++.
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---NKDLAKKYGVSGFPTLK 80 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---chhhHHhCCCCCcCEEE
Confidence 567788999999865444322 11 2355555554320 24444444566789887
No 243
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=28.74 E-value=1.8e+02 Score=19.33 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=34.9
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCc----ceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCee
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVE----FQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKIS 65 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 65 (221)
+.-|+-+||+.|+.+.=.+.+.--. .+...|+.+. .+++....-...+|++. -+|..
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~----~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE----VPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC----CHHHHHHcCCCCCCEEEEEECCEE
Confidence 3447889999999776555433211 2445566643 35665555566799988 45533
No 244
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.65 E-value=94 Score=18.50 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=25.6
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEec
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~ 36 (221)
.-+..++....+.++.-.|...|++++.+++.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 34556666778999999999999998888763
No 245
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=28.22 E-value=2e+02 Score=19.70 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=30.6
Q ss_pred eEEecCCCChhhHHHHHHHHhc----CCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEK----DVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|+...=.+... +-.+..+.|+.... ....+....-...+|+++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~--~~~~~~~~~~V~~iPt~v 81 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNP--KWLPEIDRYRVDGIPHFV 81 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCc--ccHHHHHHcCCCCCCEEE
Confidence 4567888999998776555432 22244555555421 112333444456689877
No 246
>PTZ00102 disulphide isomerase; Provisional
Probab=28.09 E-value=3.6e+02 Score=22.63 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=44.1
Q ss_pred eEEecCCCChhhHHHHHHH-------HhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCee--E---eehH
Q 027634 5 VKVYGPPLSTAVCRVVACL-------LEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKIS--L---LESR 70 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L-------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~--l---~es~ 70 (221)
+..|+.++|+.|++..=.+ ...+-++....|+... ..++........+|++. .+|.. + ....
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~ 128 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE----EMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTAD 128 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC----CHHHHHhcCCCcccEEEEEECCceEEecCCCCHH
Confidence 5678889999998764222 2223345566665432 23443333455688886 34422 2 3456
Q ss_pred HHHHHHHHhCCCC
Q 027634 71 AICRYVCENYPEK 83 (221)
Q Consensus 71 aI~~yL~~~~~~~ 83 (221)
.|.+|+.+..+..
T Consensus 129 ~l~~~l~~~~~~~ 141 (477)
T PTZ00102 129 GIVSWIKKLTGPA 141 (477)
T ss_pred HHHHHHHHhhCCC
Confidence 7889998876543
No 247
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=27.37 E-value=1.1e+02 Score=18.90 Aligned_cols=52 Identities=6% Similarity=0.077 Sum_probs=29.4
Q ss_pred eEEecCCCChhhHHHHHHHH-----hcC--CcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLL-----EKD--VEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~-----~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+..|+.++|+.|+...-.+. ..+ -.+....++... .+...+......+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----HRELCSEFQVRGYPTLL 78 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----ChhhHhhcCCCcCCEEE
Confidence 45678899999996643332 222 234555565432 23333334456788876
No 248
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=27.27 E-value=65 Score=23.53 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.3
Q ss_pred cCCeeEeehHHHHHHHHHhCC
Q 027634 61 DEKISLLESRAICRYVCENYP 81 (221)
Q Consensus 61 ~~~~~l~es~aI~~yL~~~~~ 81 (221)
..+..|+||..|-+|+.++|+
T Consensus 153 ~ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 153 YADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred hCCEEEEcCHHHHHHHHHHcC
Confidence 457899999999999999999
No 249
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=26.73 E-value=3.1e+02 Score=23.65 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=49.4
Q ss_pred eEEecCCCChhhHH-------HHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCe------eEeeh
Q 027634 5 VKVYGPPLSTAVCR-------VVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKI------SLLES 69 (221)
Q Consensus 5 ~~L~~~~~s~~~~~-------~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~------~l~es 69 (221)
+.-||-|||+.|.+ +.-.|.+.|-+.....||-... .++-...-..-.|+|. .+|. ...+.
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~a 121 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPTLKIFRNGRSAQDYNGPREA 121 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCeEEEEecCCcceeccCcccH
Confidence 46678899999874 4455666666888888876432 2222233344577877 3443 25677
Q ss_pred HHHHHHHHHhCCCC
Q 027634 70 RAICRYVCENYPEK 83 (221)
Q Consensus 70 ~aI~~yL~~~~~~~ 83 (221)
..|..||-++.+.+
T Consensus 122 dgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 122 DGIVKWLKKQSGPA 135 (493)
T ss_pred HHHHHHHHhccCCC
Confidence 89999999998755
No 250
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=26.20 E-value=1.2e+02 Score=24.58 Aligned_cols=74 Identities=12% Similarity=-0.032 Sum_probs=40.1
Q ss_pred ceEEecCCCChhhHHHHHHHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeEeehHHHHHHHHH
Q 027634 4 PVKVYGPPLSTAVCRVVACLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISLLESRAICRYVCE 78 (221)
Q Consensus 4 ~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 78 (221)
++.+|++....++..+...|...|.......=.+..|....-+....-| ...+.++.+|.+.++=..|+..|.+
T Consensus 90 ~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~awr~~~~~~~~~~~-~~~~~ivl~G~TGsGKT~iL~~L~~ 163 (345)
T PRK11784 90 RGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAYRRFVIDTLEEAP-AQFPLVVLGGNTGSGKTELLQALAN 163 (345)
T ss_pred eEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHHHHhhHHHHhhhc-ccCceEecCCCCcccHHHHHHHHHh
Confidence 4667766555688889999999997532211122222111111111112 2334556666666666777777765
No 251
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.16 E-value=3.9e+02 Score=22.36 Aligned_cols=84 Identities=18% Similarity=0.138 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHHH
Q 027634 71 AICRYVCENYPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDVY 150 (221)
Q Consensus 71 aI~~yL~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 150 (221)
.+++||+++|+-+ +....+..-...+.|+..+...+..... ...++..++..+++.+.++..
T Consensus 233 ~~a~~Le~~fGiP----~~~~~p~Gi~~t~~~l~~ia~~~g~~~~--------------~~~e~~i~~e~~~~~~~l~~~ 294 (421)
T cd01976 233 YIARMMEEKYGIP----WMEYNFFGPTKIAESLRKIAAYFDDEIT--------------AKTEEVIAEYKPAMEAVIAKY 294 (421)
T ss_pred HHHHHHHHHhCCc----EEecccCCHHHHHHHHHHHHHHhCchHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999966 4333355555566666544333221100 011223455566677777777
Q ss_pred HHHhCCCCcccCCCcchhhhcc
Q 027634 151 EKRLGESRFLAGDEFSLADLSH 172 (221)
Q Consensus 151 e~~L~~~~~l~G~~~t~aD~~~ 172 (221)
-+.|.+...++....+.+|..+
T Consensus 295 ~~~L~Gkrv~i~~g~~~~~~~~ 316 (421)
T cd01976 295 RPRLEGKTVMLYVGGLRPRHYI 316 (421)
T ss_pred HHHcCCCEEEEECCCCcHHHHH
Confidence 6778776544322233444443
No 252
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=26.14 E-value=86 Score=19.26 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=24.0
Q ss_pred hhcchhhhhHHhhccccccccccCchHHHHHHHHh
Q 027634 169 DLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEIS 203 (221)
Q Consensus 169 D~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~ 203 (221)
|+..++.+.++..... ...-+..-++..|.+++.
T Consensus 43 DvL~~~ll~~L~~~~r-~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 43 DVLTFCLLERLSNPGR-SRLKDDGTNISQWLQSLA 76 (77)
T ss_pred HHHHHHHHHHHhcccc-hhcCcCCCCHHHHHHHHh
Confidence 8888888888775433 223345678999998875
No 253
>PRK10996 thioredoxin 2; Provisional
Probab=25.88 E-value=2.2e+02 Score=19.37 Aligned_cols=56 Identities=7% Similarity=0.147 Sum_probs=34.5
Q ss_pred eEEecCCCChhhHHHHHHHHh----cCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCe
Q 027634 5 VKVYGPPLSTAVCRVVACLLE----KDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKI 64 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~ 64 (221)
+..|+.++|+.|+...-.+.. .+-.+....++... .+.+....-...+|++. .+|.
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~----~~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA----ERELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC----CHHHHHhcCCCccCEEEEEECCE
Confidence 567788999999976544433 22234555565542 35555555567799887 4554
No 254
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.67 E-value=2.2e+02 Score=19.30 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=37.2
Q ss_pred CCCChhhHHH----HHHHHhcCCcceEEEecc---CCCCCCChhhhhhCC-CCCCCeEE-cC-C-eeEeehHHHHHHHHH
Q 027634 10 PPLSTAVCRV----VACLLEKDVEFQLISLNM---AKGDHKKPDFLKIQP-FGQVPAFQ-DE-K-ISLLESRAICRYVCE 78 (221)
Q Consensus 10 ~~~s~~~~~~----~~~L~~~gi~~~~~~v~~---~~~~~~~~~~~~~~p-~~~vP~l~-~~-~-~~l~es~aI~~yL~~ 78 (221)
-+|||.|.++ .-+|++.+-....+.+.. ..|....-.|+...- ..-||+|. .+ . .-+.+...-...|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 4679998854 455665555555555543 334333333332111 23488887 33 2 456666665555554
Q ss_pred h
Q 027634 79 N 79 (221)
Q Consensus 79 ~ 79 (221)
.
T Consensus 122 ~ 122 (128)
T KOG3425|consen 122 M 122 (128)
T ss_pred H
Confidence 3
No 255
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=25.60 E-value=55 Score=20.45 Aligned_cols=51 Identities=8% Similarity=0.047 Sum_probs=28.7
Q ss_pred eEEecCCCChhhHHHHHHHHhcC------CcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKD------VEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+.+|+.++|+.|++..-.+.... ..+....++.... +.........+|++.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFVVDGFPTIL 78 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhccCCCCCEEE
Confidence 56788899999997665554332 2344455554321 121111226789887
No 256
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=25.28 E-value=4.6e+02 Score=23.10 Aligned_cols=55 Identities=9% Similarity=0.036 Sum_probs=31.8
Q ss_pred eEEecCCCChhhHHHHHH-H------HhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEE
Q 027634 5 VKVYGPPLSTAVCRVVAC-L------LEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQ 60 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~-L------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~ 60 (221)
+.-|+-++|+.|+...-. + ++.+ .+....+|..+.+....++.+......+|++.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 445688999999875322 1 1112 36666777654332234454444455689887
No 257
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=25.16 E-value=3.3e+02 Score=23.07 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCCCCCcccCCChhHHHHHHHHHHHHhccCCchhHHHHHHHhhcccCCCCCChHHHHHHHHHHHHHHHH
Q 027634 70 RAICRYVCENYPEKGNKGLFGTNPLAKASIDQWLEAEGQSFNPPSSALVFQLALAPRMNIKQDEGVIKQNEEKLAKVLDV 149 (221)
Q Consensus 70 ~aI~~yL~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (221)
..++++|.++|+.+ +....+..-...+.|+..+...+...... ...++..++..+++...++.
T Consensus 257 ~~~a~~L~e~~GiP----~~~~~~~G~~~T~~~L~~Ia~~lg~~~~~-------------~~~~~~i~~e~~~~~~~l~~ 319 (456)
T TIGR01283 257 INLARKMEEKYGIP----YFEGSFYGIEDTSKALRDIADLFGDEELL-------------KRTEELIAREEAKIRPALEP 319 (456)
T ss_pred HHHHHHHHHHcCCC----EEecCCCcHHHHHHHHHHHHHHhCChHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999865 44334444555666665544433211000 11233455556666667766
Q ss_pred HHHHhCCCCcc
Q 027634 150 YEKRLGESRFL 160 (221)
Q Consensus 150 le~~L~~~~~l 160 (221)
.-..|.+....
T Consensus 320 ~~~~L~Gkrv~ 330 (456)
T TIGR01283 320 YRERLKGKKAA 330 (456)
T ss_pred HHHHcCCCEEE
Confidence 66677776544
No 258
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.21 E-value=1.1e+02 Score=16.53 Aligned_cols=22 Identities=0% Similarity=0.208 Sum_probs=16.3
Q ss_pred chHHHHHHHHhcchhHHHHHhh
Q 027634 193 DNVGRWWGEISNRDSWKKVVDM 214 (221)
Q Consensus 193 p~l~~~~~~~~~~p~~~~~~~~ 214 (221)
..+.++++++.+.|.+++-+..
T Consensus 4 ~~l~~Fl~~~~~d~~l~~~l~~ 25 (49)
T PF07862_consen 4 ESLKAFLEKVKSDPELREQLKA 25 (49)
T ss_pred HHHHHHHHHHhcCHHHHHHHHh
Confidence 3577888888888888777664
No 259
>COG3150 Predicted esterase [General function prediction only]
Probab=24.05 E-value=95 Score=22.50 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=24.7
Q ss_pred eEEecCCCChhhHHHHHHHHhcCCcceEEEe
Q 027634 5 VKVYGPPLSTAVCRVVACLLEKDVEFQLISL 35 (221)
Q Consensus 5 ~~L~~~~~s~~~~~~~~~L~~~gi~~~~~~v 35 (221)
+-|++++.||.+.++.+.++..+-....+.+
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y 33 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEY 33 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceee
Confidence 5688999999999999999987765444443
No 260
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=23.79 E-value=1.1e+02 Score=20.44 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=21.0
Q ss_pred CCCCCCCeEEcCC-eeEeehHHHHHHHHH
Q 027634 51 QPFGQVPAFQDEK-ISLLESRAICRYVCE 78 (221)
Q Consensus 51 ~p~~~vP~l~~~~-~~l~es~aI~~yL~~ 78 (221)
....++|.++.|+ .++.+..+|.+-+..
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHHHHHH
Confidence 3456899999665 888888888776654
No 261
>PF12728 HTH_17: Helix-turn-helix domain
Probab=23.47 E-value=1.3e+02 Score=16.07 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=22.2
Q ss_pred CCCCCCeEEcCCeeEeehHHHHHHHHHh
Q 027634 52 PFGQVPAFQDEKISLLESRAICRYVCEN 79 (221)
Q Consensus 52 p~~~vP~l~~~~~~l~es~aI~~yL~~~ 79 (221)
-.|.+|.+..++.....-.+|.+|+.+.
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 23 RQGKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred HcCCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 3668888887778888889999988763
No 262
>COG3646 Uncharacterized phage-encoded protein [Function unknown]
Probab=21.81 E-value=1.1e+02 Score=21.95 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Q 027634 134 GVIKQNEEKLAKVLDVYEKRLGESRFLAGD 163 (221)
Q Consensus 134 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 163 (221)
+........+...++.+|+.|...++..+.
T Consensus 87 ~k~~~Fk~~~VkrF~Eme~~l~~~~~~~~~ 116 (167)
T COG3646 87 EKVRQFKAALVKRFDEMEEALAERAFARAL 116 (167)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 345567778888999999999887776653
No 263
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=21.10 E-value=2.1e+02 Score=18.98 Aligned_cols=58 Identities=16% Similarity=0.053 Sum_probs=35.4
Q ss_pred eEEecCCC--ChhhHHHHHHHHhcCCcc----eEEEeccCCCCCCChhhhhhCCCCCCCeEE--cCCeeE
Q 027634 5 VKVYGPPL--STAVCRVVACLLEKDVEF----QLISLNMAKGDHKKPDFLKIQPFGQVPAFQ--DEKISL 66 (221)
Q Consensus 5 ~~L~~~~~--s~~~~~~~~~L~~~gi~~----~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~l 66 (221)
+.+|+-.+ ||.|+.+.=.|.+.--.| ....|+..+ .++.....--..+|++. .+|..+
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~----~~~la~~f~V~sIPTli~fkdGk~v 96 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD----EQALAARFGVLRTPALLFFRDGRYV 96 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC----CHHHHHHcCCCcCCEEEEEECCEEE
Confidence 44566664 999998886665543333 333555542 34555556677799998 566444
No 264
>PRK08118 topology modulation protein; Reviewed
Probab=20.93 E-value=1.4e+02 Score=21.12 Aligned_cols=32 Identities=6% Similarity=-0.058 Sum_probs=27.1
Q ss_pred CcceEEecCCCChhhHHHHHHHHhcCCcceEE
Q 027634 2 ATPVKVYGPPLSTAVCRVVACLLEKDVEFQLI 33 (221)
Q Consensus 2 ~~~~~L~~~~~s~~~~~~~~~L~~~gi~~~~~ 33 (221)
|+++.+.+.+.|+-+.-++.+.+..|+++-..
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~l 32 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHL 32 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceec
Confidence 56789999999999999999999999884433
No 265
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=20.86 E-value=59 Score=18.91 Aligned_cols=45 Identities=11% Similarity=-0.102 Sum_probs=24.1
Q ss_pred chhhhcchhhhhHHhhccccccccccCchHHHHHHHHhcchhHHH
Q 027634 166 SLADLSHLPNAHYLVNATDRGEILTSRDNVGRWWGEISNRDSWKK 210 (221)
Q Consensus 166 t~aD~~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~ 210 (221)
|+.||.-...+-.+...+.+......+|++..+.......|.+-|
T Consensus 2 ~i~DilQli~lcALIf~pLgyl~~r~~~r~r~~~r~~~~~pRYlK 46 (62)
T TIGR03493 2 NISDILQLVLLCALIFFPLGYLARRSLRRIRTTLRLRLASPRYLK 46 (62)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHhcCCccccC
Confidence 677875444333333333322234456777777776666565544
No 266
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=20.78 E-value=81 Score=23.98 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=35.6
Q ss_pred HHHhcCCcceEEEeccCCCCCCChhhhhhCCCCCCCeEEcCCeeE--eehHHHHHHHHHh
Q 027634 22 CLLEKDVEFQLISLNMAKGDHKKPDFLKIQPFGQVPAFQDEKISL--LESRAICRYVCEN 79 (221)
Q Consensus 22 ~L~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l--~es~aI~~yL~~~ 79 (221)
.+...|++++...+...+-....+-|.--+-.|-+|+-..++..+ .....|.+.|.+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 556789999988887643222223333334467789999887665 3445666666443
No 267
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=20.54 E-value=2.8e+02 Score=18.63 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=28.4
Q ss_pred cCCCChhhHHHHHH----HHhcCCcceE--EEec-cCCCCCCChhhhh--hCCCCCCCeEE--cCCeeEeehHH
Q 027634 9 GPPLSTAVCRVVAC----LLEKDVEFQL--ISLN-MAKGDHKKPDFLK--IQPFGQVPAFQ--DEKISLLESRA 71 (221)
Q Consensus 9 ~~~~s~~~~~~~~~----L~~~gi~~~~--~~v~-~~~~~~~~~~~~~--~~p~~~vP~l~--~~~~~l~es~a 71 (221)
+.++||.|.++.-. +....-.... +.|. ...|.+..-.|+. .--...||+|. .++..|.|...
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhh
Confidence 35689999977644 3332223333 3332 2223333334433 23355699998 33455666543
No 268
>PF13728 TraF: F plasmid transfer operon protein
Probab=20.51 E-value=1.6e+02 Score=22.00 Aligned_cols=32 Identities=6% Similarity=-0.108 Sum_probs=22.3
Q ss_pred eEEecCCCChhhH----HHHHHHHhcCCcceEEEec
Q 027634 5 VKVYGPPLSTAVC----RVVACLLEKDVEFQLISLN 36 (221)
Q Consensus 5 ~~L~~~~~s~~~~----~~~~~L~~~gi~~~~~~v~ 36 (221)
+.+|+-..||+|+ .++.+....|++...+.+|
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 5677888999997 4555666677776665554
Done!