Query 027635
Match_columns 221
No_of_seqs 172 out of 628
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 12:54:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00160 RanBD Ran-binding d 100.0 6E-43 1.3E-47 281.9 16.1 129 19-147 1-130 (130)
2 COG5171 YRB1 Ran GTPase-activa 100.0 4.8E-43 1E-47 294.1 7.4 144 10-153 62-206 (211)
3 cd00835 RanBD Ran-binding doma 100.0 1.4E-40 3E-45 264.2 16.8 121 28-148 1-121 (122)
4 PF00638 Ran_BP1: RanBP1 domai 100.0 3.7E-40 8E-45 260.1 17.5 122 29-150 1-122 (122)
5 KOG0864 Ran-binding protein RA 99.9 1E-27 2.3E-32 208.1 0.1 161 12-172 31-198 (215)
6 KOG2724 Nuclear pore complex c 99.7 1.5E-16 3.1E-21 148.9 6.9 106 36-147 379-485 (487)
7 cd00837 EVH1 EVH1 (Enabled, Va 99.5 1.7E-12 3.6E-17 101.0 14.2 101 37-147 1-103 (104)
8 KOG0866 Ran-binding protein RA 99.3 2.3E-13 5.1E-18 123.9 1.8 117 25-145 144-264 (327)
9 cd01207 Ena-Vasp Enabled-VASP- 99.2 7.5E-10 1.6E-14 87.8 12.9 105 37-151 1-110 (111)
10 PF00568 WH1: WH1 domain; Int 99.1 3.2E-09 6.9E-14 83.2 14.6 102 37-148 8-111 (111)
11 cd01206 Homer Homer type EVH1 99.1 9.6E-10 2.1E-14 86.9 10.4 104 37-150 3-109 (111)
12 smart00461 WH1 WASP homology r 98.3 2.5E-05 5.5E-10 61.0 13.0 100 37-147 3-105 (106)
13 PF08553 VID27: VID27 cytoplas 97.6 0.0037 8.1E-08 64.0 17.7 136 34-176 244-385 (794)
14 cd01205 WASP WASP-type EVH1 do 96.5 0.21 4.5E-06 39.5 14.3 97 38-146 5-103 (105)
15 KOG4590 Signal transduction pr 96.2 0.006 1.3E-07 58.2 4.4 96 48-153 1-102 (409)
16 PF07933 DUF1681: Protein of u 95.0 0.28 6.1E-06 41.5 9.8 114 37-153 3-127 (160)
17 KOG3671 Actin regulatory prote 94.5 0.068 1.5E-06 52.3 5.4 91 46-148 46-139 (569)
18 PF06058 DCP1: Dcp1-like decap 94.4 1.5 3.3E-05 35.2 12.4 98 38-147 21-121 (122)
19 COG5167 VID27 Protein involved 92.1 1.4 3.1E-05 44.0 10.4 126 38-177 229-363 (776)
20 KOG2500 Uncharacterized conser 64.4 63 0.0014 29.2 9.1 84 62-152 43-130 (253)
21 PF11531 CARM1: Coactivator-as 64.0 59 0.0013 26.2 8.0 55 85-149 50-104 (114)
22 KOG0866 Ran-binding protein RA 55.4 2.8 6E-05 39.2 -1.0 55 37-91 242-296 (327)
23 cd00900 PH-like Pleckstrin hom 51.9 72 0.0016 21.5 6.6 24 124-147 76-99 (99)
24 PF07576 BRAP2: BRCA1-associat 49.1 28 0.00061 27.5 3.9 23 124-146 54-76 (110)
25 PF08777 RRM_3: RNA binding mo 42.8 36 0.00078 26.4 3.6 30 115-147 31-60 (105)
26 PF00640 PID: Phosphotyrosine 34.5 2.1E+02 0.0045 21.9 7.8 70 74-149 61-131 (140)
27 cd01215 Dab Disabled (Dab) Pho 34.2 2E+02 0.0043 23.8 6.9 55 82-141 68-122 (139)
28 PF10577 UPF0560: Uncharacteri 28.2 38 0.00083 35.4 2.1 28 41-68 205-232 (807)
29 PF15411 PH_10: Pleckstrin hom 27.8 1.2E+02 0.0026 24.0 4.5 21 124-144 96-116 (116)
30 PF00169 PH: PH domain; Inter 27.8 2.1E+02 0.0045 19.7 9.6 24 125-148 80-103 (104)
31 PRK14891 50S ribosomal protein 26.5 17 0.00037 29.9 -0.6 38 74-114 17-54 (131)
32 cd00934 PTB Phosphotyrosine-bi 23.8 3.1E+02 0.0067 20.3 8.6 69 74-149 51-120 (123)
33 cd01270 DYC-1 DYC-1 (DYB-1 bin 22.6 4.5E+02 0.0097 21.8 8.9 73 73-147 51-133 (140)
34 PF14242 DUF4342: Domain of un 22.1 1E+02 0.0022 23.3 2.9 24 73-98 29-52 (84)
35 KOG0804 Cytoplasmic Zn-finger 21.4 91 0.002 30.8 3.1 29 119-147 110-138 (493)
36 PF09200 Monellin: Monellin; 21.3 29 0.00064 23.1 -0.1 26 44-70 15-40 (43)
37 PF13298 LigD_N: DNA polymeras 21.0 1.6E+02 0.0036 23.1 4.0 30 59-91 60-93 (105)
38 PF04683 Proteasom_Rpn13: Prot 20.9 3.6E+02 0.0078 20.1 7.8 36 61-97 15-51 (85)
No 1
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=100.00 E-value=6e-43 Score=281.89 Aligned_cols=129 Identities=44% Similarity=0.795 Sum_probs=124.7
Q ss_pred cceeeeccccccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCC-CeEEEEEEeCCcceEEEeeeecCC
Q 027635 19 VAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVT-GKVRLVMRQSKTLKICANHLVLPM 97 (221)
Q Consensus 19 f~Piv~L~~vev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ket-gk~RLVMR~d~t~KV~lN~~I~~~ 97 (221)
|.|+|+|+.|++.||||||++||+.|||||+|+++.+.|++||+|+||||+|+++ +++|||||++++++|||||+|+++
T Consensus 1 ~~~~~~l~~ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~ 80 (130)
T smart00160 1 FKPVVPLPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKS 80 (130)
T ss_pred CCCcccCccccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCC
Confidence 7899999999999999999999999999999998888999999999999999999 999999999999999999999999
Q ss_pred CceeccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027635 98 MSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEV 147 (221)
Q Consensus 98 m~l~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~ 147 (221)
|+++++.++.++|+|++.|++|++.++++|+|||+++++|++|+.+|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~~~ea 130 (130)
T smart00160 81 MTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNIFEEA 130 (130)
T ss_pred cEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHHHHhC
Confidence 99999888889999999999999999999999999999999999999875
No 2
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.8e-43 Score=294.15 Aligned_cols=144 Identities=44% Similarity=0.761 Sum_probs=138.7
Q ss_pred CCccCCCCccceeeeccccccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCCcceEE
Q 027635 10 REEEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKIC 89 (221)
Q Consensus 10 ~~ee~~~~~f~Piv~L~~vev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~t~KV~ 89 (221)
...+.+++||+|||.|+.|.++|.|+||.+||.+||||||||.+.+.|++||+|+++|++|+.|+++||+||||+||+||
T Consensus 62 ~~pesp~ihfepvV~l~~v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklc 141 (211)
T COG5171 62 KGPESPNIHFEPVVELQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLC 141 (211)
T ss_pred CCCCCCCcchHHHHHHHhhhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecCCCceeccCCCCceEEEE-eeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhch
Q 027635 90 ANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 153 (221)
Q Consensus 90 lN~~I~~~m~l~~~~~s~ks~vw~-a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~~ 153 (221)
+||.|.|.|+++||.|++|+|+|+ ..|.+.|+++.++|+|||.|.++|+.|...|+.+|+.+.+
T Consensus 142 aNH~i~Pe~kl~PnvgsdrsWvw~~taD~~Egea~a~tFairF~s~Ena~~FkEefek~qe~N~K 206 (211)
T COG5171 142 ANHFINPEFKLQPNVGSDRSWVWMSTADTVEGEAKAQTFAIRFYSEENAKRFKEEFEKGQEHNEK 206 (211)
T ss_pred hhhccCcceeccCCCCcccceEEEeecccccCcceeeEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 5799999999999999999999999999999999998764
No 3
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=100.00 E-value=1.4e-40 Score=264.20 Aligned_cols=121 Identities=50% Similarity=0.856 Sum_probs=116.3
Q ss_pred cccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCC
Q 027635 28 VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGND 107 (221)
Q Consensus 28 vev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ 107 (221)
|++.||||||++||+.|||||+|+++.++|++||+|+||||+|++++++|||||+|++++|||||+|+|+|+++++.+++
T Consensus 1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~ 80 (122)
T cd00835 1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSD 80 (122)
T ss_pred CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCC
Confidence 57999999999999999999999988899999999999999999999999999999999999999999999999988778
Q ss_pred ceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHH
Q 027635 108 KSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVA 148 (221)
Q Consensus 108 ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~ 148 (221)
++|+|++.|++++++++++|+|||+++++|++|..+|++++
T Consensus 81 k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~~ 121 (122)
T cd00835 81 KSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEAIEEAK 121 (122)
T ss_pred cEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHHHHHhh
Confidence 99999999999877889999999999999999999999986
No 4
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=100.00 E-value=3.7e-40 Score=260.08 Aligned_cols=122 Identities=50% Similarity=0.809 Sum_probs=113.5
Q ss_pred ccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCc
Q 027635 29 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDK 108 (221)
Q Consensus 29 ev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~k 108 (221)
+|+||||+|++||+.|||||+|+++.++|++||+|+|||++|++++++|||||++++++|||||+|+++|.++++.++.+
T Consensus 1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~ 80 (122)
T PF00638_consen 1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEK 80 (122)
T ss_dssp CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTT
T ss_pred CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCc
Confidence 58999999999999999999999878999999999999999999999999999999999999999999999999988899
Q ss_pred eEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 027635 109 SCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAES 150 (221)
Q Consensus 109 s~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~ 150 (221)
+|+|++.|++++.+++.+|+|||+++++|++|+++|+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~~i~e~~~~ 122 (122)
T PF00638_consen 81 SLVWTAIDYADEEGKPETYLIRFKSAEDADEFKKKIEEAKEK 122 (122)
T ss_dssp EEEEEEEECTTSSSEEEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCceEEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 999999999998889999999999999999999999999863
No 5
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-27 Score=208.08 Aligned_cols=161 Identities=41% Similarity=0.651 Sum_probs=144.1
Q ss_pred ccCCCCccceeeeccccccccCcccceeEEEEee-eEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCCc-ceEE
Q 027635 12 EEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKA-KLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKT-LKIC 89 (221)
Q Consensus 12 ee~~~~~f~Piv~L~~vev~tGEEdEe~lf~~Ra-KLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~t-~KV~ 89 (221)
++.+..++.|++.+..+.+.||++++.++|..|+ +||+|+.+.++|++||+|.++|++|+++|..|+|||+|++ ++||
T Consensus 31 ~~~~~~~~~~~~~~~~~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v~ 110 (215)
T KOG0864|consen 31 EESPAKQVEPQEELEKVEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKVC 110 (215)
T ss_pred ccCccccccccccccchhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhhc
Confidence 5889999999999999999999999999999996 9999999999999999999999999999999999999999 8999
Q ss_pred EeeeecCCCceeccCCCCceEEEE-eeecCCCCceeeEEEEEeCCHHH-HHHHHHHHHHHHHHhchhcc---ccchhHHH
Q 027635 90 ANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVEN-CKSFMEMVHEVAESQKKKEE---NKDASATA 164 (221)
Q Consensus 90 lN~~I~~~m~l~~~~~s~ks~vw~-a~D~adge~k~e~~~IRFksaE~-A~~F~~~~ee~~e~~~~~~~---~~~~~~~~ 164 (221)
+||+|+++|+++|+...+++|+|. +.||+++.+...+|+|||.+.++ ++.|+..|+.+.+.+...++ .......+
T Consensus 111 sn~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~e~s~~~f~~~~e~~~~~~~~~ek~~~~~~~~~~~ 190 (215)
T KOG0864|consen 111 SNHFIGPSFKLEPPAWEEDSGKWNSLADFSETQPKAEKLAIRFAKVESSGKAFKEKIEEAKEGIEENEKNQESSKNAHNL 190 (215)
T ss_pred ccccccCcccccCCcccCcchhhhhhhhhcccccchhHHHHHhhhhcccchhhHhhhhhhhhhhhhhhhhhccccccccc
Confidence 999999999999999999999995 88999999999999999999999 99999999999988765433 33344445
Q ss_pred HHHhccCc
Q 027635 165 GLLEKLSV 172 (221)
Q Consensus 165 ~~~e~l~~ 172 (221)
+.|+.+-.
T Consensus 191 ~~~~~~~~ 198 (215)
T KOG0864|consen 191 EYLKGGWK 198 (215)
T ss_pred hhhhhhHH
Confidence 55554433
No 6
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.5e-16 Score=148.94 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=89.0
Q ss_pred cceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCC-cceEEEeeeecCCCceeccCCCCceEEEEe
Q 027635 36 DEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSK-TLKICANHLVLPMMSVQEHAGNDKSCVWHA 114 (221)
Q Consensus 36 dEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~-t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a 114 (221)
.++.+|+.||++|++.. +++.++|||+|||..+.. ++..||+|.|. +|+|+||.+|+++|+++++..+ ..++++
T Consensus 379 edda~ysKkckvfykKd--KEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~gkn-nvlIvc- 453 (487)
T KOG2724|consen 379 EDDAVYSKKCKVFYKKD--KEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKN-NVLIVC- 453 (487)
T ss_pred CccchhccccceEEEec--ccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceeccCC-ceEEEE-
Confidence 35899999999999964 799999999999977765 99999999985 6799999999999999997543 333333
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027635 115 ADYADGELKDELFCIRFGSVENCKSFMEMVHEV 147 (221)
Q Consensus 115 ~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~ 147 (221)
.- ......+.+|||||++++.|++|.++|.+.
T Consensus 454 vp-~~e~t~p~TmLIRvktad~aD~L~~kI~E~ 485 (487)
T KOG2724|consen 454 VP-PSESTEPATMLIRVKTADGADKLTDKILEV 485 (487)
T ss_pred eC-CcccccceeEEEEecccchHHHHHHHHHhh
Confidence 22 334467999999999999999999999885
No 7
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.48 E-value=1.7e-12 Score=100.96 Aligned_cols=101 Identities=21% Similarity=0.325 Sum_probs=88.7
Q ss_pred ceeEEEEeeeEEEEccCCCCCcee--eeEEEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEEe
Q 027635 37 EDAILDLKAKLYRFDKDGNQWKER--GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114 (221)
Q Consensus 37 Ee~lf~~RaKLyrfdke~~~WkER--GvG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a 114 (221)
+.+|+..+|.||.+++..+.|..+ |+|.|.|.++...+.+||+|++-+..++++|+.|.++|.+.. .++....|-.
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~--~~~~Fh~w~~ 78 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQ--ATPFFHQWED 78 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEee--cCCeEEEEEc
Confidence 357999999999999888999999 999999999998889999999999999999999999998876 3456666663
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027635 115 ADYADGELKDELFCIRFGSVENCKSFMEMVHEV 147 (221)
Q Consensus 115 ~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~ 147 (221)
- ...|-+.|.|.++|+.|...+.++
T Consensus 79 ~--------~~~~GL~F~se~eA~~F~~~v~~~ 103 (104)
T cd00837 79 D--------NCVYGLNFASEEEAAQFRKKVLEA 103 (104)
T ss_pred C--------CcEEEEeeCCHHHHHHHHHHHHhc
Confidence 2 136999999999999999999875
No 8
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.3e-13 Score=123.93 Aligned_cols=117 Identities=33% Similarity=0.482 Sum_probs=97.8
Q ss_pred ccccccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCC----eEEEEEEeCCcceEEEeeeecCCCce
Q 027635 25 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVMRQSKTLKICANHLVLPMMSV 100 (221)
Q Consensus 25 L~~vev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketg----k~RLVMR~d~t~KV~lN~~I~~~m~l 100 (221)
+..|++.+|||++.++|++.||||.|++-.+.|.+||+|+||++....++ ..|||||..++++|++|..||..|.+
T Consensus 144 ~~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~~ 223 (327)
T KOG0866|consen 144 LSAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQI 223 (327)
T ss_pred ceeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHHH
Confidence 56899999999999999999999999997789999999999999887654 38999999999999999999999998
Q ss_pred eccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHH
Q 027635 101 QEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVH 145 (221)
Q Consensus 101 ~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~e 145 (221)
... +.++++.+++|.... ....|+|+++.....+--...+.
T Consensus 224 ek~--sq~~ir~~a~~~e~~--~v~vFl~~~~~~rtd~i~~s~~~ 264 (327)
T KOG0866|consen 224 EKA--SQKSIRITAMDTEGQ--GVKVFLISASSKRTDQIYKSLSH 264 (327)
T ss_pred hhh--cccceeeccccccCC--cceEEEeeccccchhhhhhhhhh
Confidence 874 557799998887553 25679999987655443333333
No 9
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.17 E-value=7.5e-10 Score=87.83 Aligned_cols=105 Identities=19% Similarity=0.407 Sum_probs=90.3
Q ss_pred ceeEEEEeeeEEEEccCCCCCceeeeE-----EEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEE
Q 027635 37 EDAILDLKAKLYRFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV 111 (221)
Q Consensus 37 Ee~lf~~RaKLyrfdke~~~WkERGvG-----~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~v 111 (221)
|..||..||.+|.||+..+.|..-|-| .|.|.++...+.+||+-|+.+-.++++|+.|+++|.+.. .++....
T Consensus 1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k--~~p~Fh~ 78 (111)
T cd01207 1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQ--ATPTFHQ 78 (111)
T ss_pred CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEecCCceeee--cCCccee
Confidence 567999999999999988899987775 799999988889999999977789999999999999876 3455666
Q ss_pred EEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHh
Q 027635 112 WHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQ 151 (221)
Q Consensus 112 w~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~ 151 (221)
|.. . ...|-+.|.|.++|..|...|+.|.+.+
T Consensus 79 w~~-----~---~~v~GLnF~Se~eA~~F~~~v~~Al~~L 110 (111)
T cd01207 79 WRD-----A---RQVYGLNFGSKEDATMFASAMLSALEVL 110 (111)
T ss_pred eec-----C---CeEEeeccCCHHHHHHHHHHHHHHHHhh
Confidence 652 2 2579999999999999999999998876
No 10
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=99.12 E-value=3.2e-09 Score=83.18 Aligned_cols=102 Identities=18% Similarity=0.286 Sum_probs=87.0
Q ss_pred ceeEEEEeeeEEEEccCCCC-Cce-eeeEEEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEEe
Q 027635 37 EDAILDLKAKLYRFDKDGNQ-WKE-RGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114 (221)
Q Consensus 37 Ee~lf~~RaKLyrfdke~~~-WkE-RGvG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a 114 (221)
-.+|+..+|.||..++..+. |.. .|.|.|.|.++.....+||.++.-+.+++++|+.|.++|.+... ++....|..
T Consensus 8 ~~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~--~~~Fh~f~~ 85 (111)
T PF00568_consen 8 CQSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKA--RPFFHQFED 85 (111)
T ss_dssp EEEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEE--SSSEEEEEE
T ss_pred ceEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeC--CCcEEEEEe
Confidence 37899999999999887666 999 99999999999877889999999779999999999999999874 455666663
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHH
Q 027635 115 ADYADGELKDELFCIRFGSVENCKSFMEMVHEVA 148 (221)
Q Consensus 115 ~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~ 148 (221)
. . ..|-|.|.+.++|+.|...|++++
T Consensus 86 ~----~----~~~GLnF~se~eA~~F~~~v~~~~ 111 (111)
T PF00568_consen 86 D----D----CVYGLNFASEEEADQFYKKVQEAK 111 (111)
T ss_dssp T----T----CEEEEEESSHHHHHHHHHHHHHHH
T ss_pred C----C----eEEEEecCCHHHHHHHHHHHhccC
Confidence 2 1 279999999999999999998863
No 11
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.10 E-value=9.6e-10 Score=86.87 Aligned_cols=104 Identities=21% Similarity=0.388 Sum_probs=85.9
Q ss_pred ceeEEEEeeeEEEEccCC-CCCceeeeE--EEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEE
Q 027635 37 EDAILDLKAKLYRFDKDG-NQWKERGAG--TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 113 (221)
Q Consensus 37 Ee~lf~~RaKLyrfdke~-~~WkERGvG--~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~ 113 (221)
|..||+.||.+|.||+.. +.|..-|-| .|+|..+.....+|||-|.+ .++++|+.|+++|++.. .+.+.-.|.
T Consensus 3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~--~~~iINc~i~~~~~y~k--as~~FhQWr 78 (111)
T cd01206 3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGG--TKAIINSTITPNMTFTK--TSQKFGQWA 78 (111)
T ss_pred ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecC--cEEEEeccccCCcceee--ccccccccc
Confidence 678999999999999975 599887776 56666777778999999876 49999999999999987 455666666
Q ss_pred eeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 027635 114 AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAES 150 (221)
Q Consensus 114 a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~ 150 (221)
| .. .-+.|-|-|.+.++|+.|...|+++++.
T Consensus 79 --D---~R-~~tVyGLnF~Sk~ea~~F~~~f~~~~~~ 109 (111)
T cd01206 79 --D---SR-ANTVYGLGFSSEQQLTKFAEKFQEVKEA 109 (111)
T ss_pred --c---cc-cceeeecccCCHHHHHHHHHHHHHHHHh
Confidence 3 21 1378999999999999999999998864
No 12
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=98.30 E-value=2.5e-05 Score=60.98 Aligned_cols=100 Identities=20% Similarity=0.322 Sum_probs=78.8
Q ss_pred ceeEEEEeeeEEEEccCCCCCceeeeE-EEEEEEeC--CCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEE
Q 027635 37 EDAILDLKAKLYRFDKDGNQWKERGAG-TVKLLKHK--VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 113 (221)
Q Consensus 37 Ee~lf~~RaKLyrfdke~~~WkERGvG-~LkLlk~k--etgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~ 113 (221)
+.+++..+|-++.|+...+.|...|.| .+.+.... .+.-+||+=++.+. ++++|+.|.++|.+... .+....|-
T Consensus 3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~--~~~Fh~f~ 79 (106)
T smart00461 3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQA--TPTFHQWA 79 (106)
T ss_pred CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeec--CCceEEEE
Confidence 467888899999998877789999999 77776543 34568999888654 89999999999998763 34455555
Q ss_pred eeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027635 114 AADYADGELKDELFCIRFGSVENCKSFMEMVHEV 147 (221)
Q Consensus 114 a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~ 147 (221)
. . ...|-+.|.|.++|+.|...|.++
T Consensus 80 ~-----~---~~~~GLnF~se~EA~~F~~~v~~~ 105 (106)
T smart00461 80 D-----D---KCVYGLNFASEEEAKKFRKKVLKA 105 (106)
T ss_pred e-----C---CeEEEeecCCHHHHHHHHHHHHhc
Confidence 2 1 246999999999999999999875
No 13
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.62 E-value=0.0037 Score=63.99 Aligned_cols=136 Identities=17% Similarity=0.213 Sum_probs=95.2
Q ss_pred cccceeEEEEeeeEEEEccCCCCCceeeeE-EEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEE
Q 027635 34 EEDEDAILDLKAKLYRFDKDGNQWKERGAG-TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 112 (221)
Q Consensus 34 EEdEe~lf~~RaKLyrfdke~~~WkERGvG-~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw 112 (221)
......++...|.||.||.....|.-.+-. .++|.+. |++-..++-.+..++++++.|.+.|++.-+.. -.+++|
T Consensus 244 p~~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~~---~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~e-~lSFiF 319 (794)
T PF08553_consen 244 PEAGEILASESAELYLYDPPTGKFVLQDSSVTAKIIET---GKWEYWLQIEGKDKIWLGQPVSSDMNPVFNFE-HLSFIF 319 (794)
T ss_pred CCccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEEc---CCeEEEEEEecCCceEEeeeccCCcCeEEEcc-eeEEEE
Confidence 344459999999999999988899876533 3555554 55555555556667889999999999776543 367888
Q ss_pred EeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhchh-----ccccchhHHHHHHhccCccccc
Q 027635 113 HAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKK-----EENKDASATAGLLEKLSVEENK 176 (221)
Q Consensus 113 ~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~~~-----~~~~~~~~~~~~~e~l~~~~~~ 176 (221)
+.... +| ..-+|+|||.+.+....|...|..|.=++-.. .++.+-.-..+.+..+.+++..
T Consensus 320 N~~~~-~~--~~~sw~lkF~~~~~~~~F~~~~~~~l~E~~n~~~w~~~k~~e~~Y~~~~~~~~~~ed~~ 385 (794)
T PF08553_consen 320 NYYTE-DG--SAYSWLLKFKDQEDYERFQEKFMKCLWENLNKMKWSKIKEDEQEYVLDAFSDLEMEDAD 385 (794)
T ss_pred EeEcC-CC--ceEEEEEEeCCHHHHHHHHHHHHHHHHHHhhcCCcccCcHHHHHHHHHHhhhccccccc
Confidence 85332 23 57899999999999999999999998443321 1233344455556666666543
No 14
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=96.53 E-value=0.21 Score=39.49 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=72.5
Q ss_pred eeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCe--EEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEEee
Q 027635 38 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGK--VRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA 115 (221)
Q Consensus 38 e~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk--~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a~ 115 (221)
.+|...=+.||.-.++.+.|.-...|.|-+.+...... .||+=.. +.+++..+-|+.+|.++.. +.+-.+ .
T Consensus 5 ~il~~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~--~~~v~weqElY~~f~y~~~----r~fFht-F 77 (105)
T cd01205 5 KILATAVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIK--ANRIIWEQELYDNFEYQQP----RPFFHT-F 77 (105)
T ss_pred eEEEEEEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEcc--CCcEEEEEEcccCcEEccC----CCcEEE-E
Confidence 45666778999997767899999999999988864433 4655544 4899999999999998763 322222 1
Q ss_pred ecCCCCceeeEEEEEeCCHHHHHHHHHHHHH
Q 027635 116 DYADGELKDELFCIRFGSVENCKSFMEMVHE 146 (221)
Q Consensus 116 D~adge~k~e~~~IRFksaE~A~~F~~~~ee 146 (221)
.- | .-++-+.|.+.+.|..|+.++.+
T Consensus 78 e~-d----~c~~GL~Fade~EA~~F~k~v~~ 103 (105)
T cd01205 78 EG-D----DCVVGLNFADETEAAEFRKKVLD 103 (105)
T ss_pred ec-c----CcEEEEEECCHHHHHHHHHHHHh
Confidence 11 1 23688899999999999999876
No 15
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=96.16 E-value=0.006 Score=58.24 Aligned_cols=96 Identities=20% Similarity=0.410 Sum_probs=74.8
Q ss_pred EEEccCCCCCceeeeE-----EEEEEEeCCCCeEEEEEEeCCc-ceEEEeeeecCCCceeccCCCCceEEEEeeecCCCC
Q 027635 48 YRFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKT-LKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGE 121 (221)
Q Consensus 48 yrfdke~~~WkERGvG-----~LkLlk~ketgk~RLVMR~d~t-~KV~lN~~I~~~m~l~~~~~s~ks~vw~a~D~adge 121 (221)
|.||...+.|.--|.| .|+|..|.....+|||-|.-+. .-|+||++|.++++|.. ....+-.|-. .
T Consensus 1 M~ydd~~k~W~p~g~g~~~~s~V~~~~h~~~n~frVvg~k~qdd~~vVlnC~I~kGlkYnk--atptFHqWR~-----a- 72 (409)
T KOG4590|consen 1 MTYDDSQKGWLPAGGGGAALSKVRIYHHTSGNTFRVVGRKSQDDQQVVLNCLILKGLKYNK--ATPTFHQWRD-----A- 72 (409)
T ss_pred CcccccccccccccccCcccceeEEEeeccCCceeEEeeecccCcccccccccccCcceee--cccchhhhhh-----h-
Confidence 3566667888876643 4677777777789999998776 88999999999999865 3333445542 2
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHHHHHHHHhch
Q 027635 122 LKDELFCIRFGSVENCKSFMEMVHEVAESQKK 153 (221)
Q Consensus 122 ~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~~ 153 (221)
.+.|-+.|.+.++|..|...+-.+.+.+..
T Consensus 73 --rqvyGLnFqs~~DA~~Fa~~~~~A~e~l~~ 102 (409)
T KOG4590|consen 73 --RQVYGLTFQSEQDARAFARGVPVAIEALSG 102 (409)
T ss_pred --hhhhcccccChhhhhhhhhhhhhhhhhhcc
Confidence 357999999999999999999999998863
No 16
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=94.98 E-value=0.28 Score=41.47 Aligned_cols=114 Identities=13% Similarity=0.214 Sum_probs=67.3
Q ss_pred ceeEEEE-eeeEEEEccC-------CCCCc---eeeeEEEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCC
Q 027635 37 EDAILDL-KAKLYRFDKD-------GNQWK---ERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAG 105 (221)
Q Consensus 37 Ee~lf~~-RaKLyrfdke-------~~~Wk---ERGvG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~ 105 (221)
|.+||.. .|-+|+.-+- ...|. ..=+|-|||....+.-++.|++-...++.+-+.+++.....+.+...
T Consensus 3 e~vL~~~~ev~VY~IPP~~s~~GyrAadW~~~~~iwtGrlrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~~~VE~v~D 82 (160)
T PF07933_consen 3 ERVLFVIPEVHVYKIPPRTSNKGYRAADWTLDKPIWTGRLRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDYAAVEPVID 82 (160)
T ss_dssp S---B--SSEEEEE--S--SSSS--HHHH--SSS-EEEEEEEE--SSSE--EEEEE-SS--SS-EEEEE-SS--EEE-TT
T ss_pred eEEEEEcCcEEEEECCCCCCCCCeecccCCCCCceeeeEEEEEEcCCeeEEEEEecCCCCcceEEECcccCCCceEEeec
Confidence 4556663 3777777431 12343 34488999987755445588777778999999999999888888888
Q ss_pred CCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhch
Q 027635 106 NDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 153 (221)
Q Consensus 106 s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~~ 153 (221)
|.|.+++...|. . ++...+=|-|..=.+|=.|..+|++..+.++.
T Consensus 83 SSRYFvlRv~d~-~--Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~~~~ 127 (160)
T PF07933_consen 83 SSRYFVLRVQDP-S--GRHAFIGIGFRERSDAFDFNVALQDHRKYLKR 127 (160)
T ss_dssp --S-EEEEEEET-T--TEEEEEEEE-S-HHHHHHHHHHHHHHHS-SS-
T ss_pred ccceEEEEEEcC-C--CcEEEEEEeeccccccccHHHHHHHHHHHhhc
Confidence 889999988875 3 36788899999999999999999999987654
No 17
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=94.46 E-value=0.068 Score=52.32 Aligned_cols=91 Identities=21% Similarity=0.337 Sum_probs=63.6
Q ss_pred eEEEEccCCCCCceeee-EEEEEEEeCCC--CeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEEeeecCCCCc
Q 027635 46 KLYRFDKDGNQWKERGA-GTVKLLKHKVT--GKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGEL 122 (221)
Q Consensus 46 KLyrfdke~~~WkERGv-G~LkLlk~ket--gk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a~D~adge~ 122 (221)
+||.-+.+.+.|.-+|. |-|-|-+.... --.||+--.+ ++||..+-|+.+|.|.. ++.+ ||.+.-.|+
T Consensus 46 qLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~--~rliWdqELY~nf~y~q----~r~f-fhtFegddc-- 116 (569)
T KOG3671|consen 46 QLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVN--NRLIWDQELYQNFEYRQ----PRTF-FHTFEGDDC-- 116 (569)
T ss_pred HHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecC--ceeeehHHhhhhceecc----Cccc-eeeeccccc--
Confidence 56776666679999999 99988666432 2245554443 56999999999999864 4433 232221122
Q ss_pred eeeEEEEEeCCHHHHHHHHHHHHHHH
Q 027635 123 KDELFCIRFGSVENCKSFMEMVHEVA 148 (221)
Q Consensus 123 k~e~~~IRFksaE~A~~F~~~~ee~~ 148 (221)
+.-+.|-+.++|+.|+..+++-.
T Consensus 117 ---~aGLnF~~E~EA~~F~k~V~~r~ 139 (569)
T KOG3671|consen 117 ---QAGLNFASEEEAQKFRKKVQDRI 139 (569)
T ss_pred ---eeeecccCHHHHHHHHHHHHHHh
Confidence 56778999999999999998754
No 18
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=94.43 E-value=1.5 Score=35.15 Aligned_cols=98 Identities=17% Similarity=0.401 Sum_probs=67.2
Q ss_pred eeEEE-EeeeEEEEccCCCCCceeee-EEEEEEEeCCCCeEEEE-EEeCCcceEEEeeeecCCCceeccCCCCceEEEEe
Q 027635 38 DAILD-LKAKLYRFDKDGNQWKERGA-GTVKLLKHKVTGKVRLV-MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114 (221)
Q Consensus 38 e~lf~-~RaKLyrfdke~~~WkERGv-G~LkLlk~ketgk~RLV-MR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a 114 (221)
++|.. ..|-||.|+..+++|...|+ |+|.|.+.....+++|+ |=|.++..++. .|++++.+..+ +..+.+..
T Consensus 21 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~--~i~~~~~~e~~---~~~l~~r~ 95 (122)
T PF06058_consen 21 SILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVE--PITPDLDFELQ---DPYLIYRN 95 (122)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEE--EE-SGGGEEEE---TTEEEEEE
T ss_pred HHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceee--ecCCCcEEEEe---CCEEEEEc
Confidence 34444 66999999988899988776 89999866555566544 44444555554 38888888764 34566651
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027635 115 ADYADGELKDELFCIRFGSVENCKSFMEMVHEV 147 (221)
Q Consensus 115 ~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~ 147 (221)
+. ...|-|=|=+.++++.....|+..
T Consensus 96 ----~~---~~I~GiWf~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 96 ----DN---QEIYGIWFYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp ----TT---TEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ----CC---ceEEEEEEEeHHHHHHHHHHHHhc
Confidence 11 267999999999999999988764
No 19
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.15 E-value=1.4 Score=44.01 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=85.8
Q ss_pred eeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeC-------CCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceE
Q 027635 38 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-------VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 110 (221)
Q Consensus 38 e~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~k-------etgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~ 110 (221)
+.++..-+-||+||.-.. ..|++.+ ++|++-..+|-.+--+++|-..|.+.|++.-...+ -++
T Consensus 229 e~~~~~~~~l~~yd~~~e---------~Filq~p~Vkv~i~d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~~-~tF 298 (776)
T COG5167 229 ETLYSKNGVLSRYDTATE---------RFILQKPHVKVVIVDDGKEVFWIRIETRDDVILFEEVRTETNPYFDQKN-TTF 298 (776)
T ss_pred ceeeeecceEEeecchhh---------eeeecCCceEEEEEecCCeEEEEEEecccceeehheeccccCcceeccc-cee
Confidence 678999999999997322 2233332 46888888888777778888999999887654444 479
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHH-hch-hccccchhHHHHHHhccCcccccc
Q 027635 111 VWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAES-QKK-KEENKDASATAGLLEKLSVEENKT 177 (221)
Q Consensus 111 vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~-~~~-~~~~~~~~~~~~~~e~l~~~~~~~ 177 (221)
+|+.++ ++ ..-+|++||.+-..+-+|..++-.|.=. +++ .-.+.++..-.=.|+..+|..++.
T Consensus 299 vwny~~--~n--~~~s~~LrF~d~~~~~qF~~~~i~cLw~~lN~e~w~~~~~e~kDYilds~~~~~E~q 363 (776)
T COG5167 299 VWNYME--DN--VFHSFSLRFLDNLDFLQFLSKYIGCLWRNLNNEKWGNEEAERKDYILDSSSVPLEKQ 363 (776)
T ss_pred eeeeec--cc--chheeeeeecchhHHHHHHHHHHHHHHHHhhhhhccCchhhhhccccccccCchhhc
Confidence 999655 23 3568999999999999999999999733 332 111222222233455566655443
No 20
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.42 E-value=63 Score=29.19 Aligned_cols=84 Identities=13% Similarity=0.196 Sum_probs=62.4
Q ss_pred eEEEEEEEeCCCCeEEEEEEe-C-CcceEEEeeeecCC--CceeccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHH
Q 027635 62 AGTVKLLKHKVTGKVRLVMRQ-S-KTLKICANHLVLPM--MSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENC 137 (221)
Q Consensus 62 vG~LkLlk~ketgk~RLVMR~-d-~t~KV~lN~~I~~~--m~l~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A 137 (221)
.|-|||--. .-|++||- | .++-+-++++|..+ ..+.....|.|.+++..- ||.++...+-|-|..-.+|
T Consensus 43 tGrlrvvak----g~~~~ikLeD~tsg~LfA~c~id~~~~~avEav~DSSRYFViRv~---dgngr~AFiGlGF~eR~da 115 (253)
T KOG2500|consen 43 TGRLRVVAK----GERCEIKLEDKTSGELFAQCPIDEGPGNAVEAVSDSSRYFVIRVE---DGNGRHAFIGLGFGERGDA 115 (253)
T ss_pred cceeEEEEc----CcEEEEEeccCCchhhhhhCcccCCCCccceeecccceEEEEEEe---CCCccEEEEeecccccccc
Confidence 677888443 24777885 3 47899999999874 455555566677776643 5777788888999988899
Q ss_pred HHHHHHHHHHHHHhc
Q 027635 138 KSFMEMVHEVAESQK 152 (221)
Q Consensus 138 ~~F~~~~ee~~e~~~ 152 (221)
=.|-.+++++-+=++
T Consensus 116 fDfnvaLqDHfkyv~ 130 (253)
T KOG2500|consen 116 FDFNVALQDHFKYVK 130 (253)
T ss_pred cchhhhHHHHHHHHH
Confidence 999999999876554
No 21
>PF11531 CARM1: Coactivator-associated arginine methyltransferase 1 N terminal; InterPro: IPR020989 Histone-arginine methyltransferase CARM1 (also known as coactivator-associated arginine methyltransferase 1) methylates arginine residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability []. CARM1 is recruited by several transcription factors and plays a critical role in gene expression as a positive regulator. This entry represents the N-terminal domain of CARM1. Structurally this domain adopts a PH domain-like fold, a common structural scaffold found in a broad range proteins with diverse activities, which is frequently found to regulate protein-protein interactions []. ; GO: 0009405 pathogenesis; PDB: 2OQB_B 2Y1W_C 2Y1X_D.
Probab=63.99 E-value=59 Score=26.21 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=38.7
Q ss_pred cceEEEeeeecCCCceeccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027635 85 TLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAE 149 (221)
Q Consensus 85 t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e 149 (221)
..-.++-..|++...+.+... .+++++. + -.+.+|+|.+..+-..|+..+..|+.
T Consensus 50 ~~~cvfkc~VsreTEccRVG~--~SfliTl-g-------~nSlLl~F~s~~df~~F~n~lk~cr~ 104 (114)
T PF11531_consen 50 ECVCVFKCTVSRETECCRVGK--QSFLITL-G-------CNSLLLQFASPADFSSFHNILKRCRN 104 (114)
T ss_dssp T--EEEEEEEETTSEEEEETT--TEEEEEE-T-------TEEEEEE-SSHHHHHHHHHHHCCCTT
T ss_pred CCEEEEEEEEcCCcceeEecc--eEEEEEe-c-------CCeEEEEecCHHHHHHHHHHHHHHhC
Confidence 344566778888888777532 5677775 2 24799999999999999998876653
No 22
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.35 E-value=2.8 Score=39.20 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=50.6
Q ss_pred ceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCCcceEEEe
Q 027635 37 EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 91 (221)
Q Consensus 37 Ee~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~t~KV~lN 91 (221)
..-+|-.+++.|+++.-.+.+-.||+|.+++...++.++.|++.+-.+.+.++.|
T Consensus 242 ~v~vFl~~~~~~rtd~i~~s~~~~~i~~~~~~~~r~~~kak~~~~~e~s~~~l~~ 296 (327)
T KOG0866|consen 242 GVKVFLISASSKRTDQIYKSLSHRSIAALKSRVERECLKAKMPAPEEGSAPLLKE 296 (327)
T ss_pred cceEEEeeccccchhhhhhhhhhhhhhhhhcccchhhhhcccCCCcccccccccc
Confidence 6889999999999987678999999999999988888899999999998888877
No 23
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=51.85 E-value=72 Score=21.51 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=21.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHHHHH
Q 027635 124 DELFCIRFGSVENCKSFMEMVHEV 147 (221)
Q Consensus 124 ~e~~~IRFksaE~A~~F~~~~ee~ 147 (221)
...|.+++.|.+++..++.+|..+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 578999999999999999998753
No 24
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=49.07 E-value=28 Score=27.50 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHHHH
Q 027635 124 DELFCIRFGSVENCKSFMEMVHE 146 (221)
Q Consensus 124 ~e~~~IRFksaE~A~~F~~~~ee 146 (221)
.-..||+|.+...|++|+..|.-
T Consensus 54 rymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 54 RYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred eEEEEEEECCHHHHHHHHHHhCC
Confidence 44678899999999999998863
No 25
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=42.83 E-value=36 Score=26.37 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=20.5
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027635 115 ADYADGELKDELFCIRFGSVENCKSFMEMVHEV 147 (221)
Q Consensus 115 ~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~ 147 (221)
+||..|. ..=.|||.+++.|+.+..++...
T Consensus 31 VD~~~G~---~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 31 VDFSRGD---TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EE--TT----SEEEEEESS---HHHHHHHHHHT
T ss_pred EEecCCC---CEEEEEECCcchHHHHHHHHHhc
Confidence 4888774 46789999999999999999887
No 26
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=34.49 E-value=2.1e+02 Score=21.86 Aligned_cols=70 Identities=7% Similarity=0.117 Sum_probs=40.5
Q ss_pred CeEEEEEEeCCcceEEEeeeecCCCceec-cCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027635 74 GKVRLVMRQSKTLKICANHLVLPMMSVQE-HAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAE 149 (221)
Q Consensus 74 gk~RLVMR~d~t~KV~lN~~I~~~m~l~~-~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e 149 (221)
..+||+ ...+..++++|+|..=--+.. ...+.+.+-|.+.|- +.....-++++..+ .|.++...|..+-+
T Consensus 61 ~gI~v~--~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~~--~~~~~~CHVF~~~~--~A~~i~~~i~~aF~ 131 (140)
T PF00640_consen 61 DGIKVI--DPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARDP--RSSRFYCHVFKCED--QAQEICQAIGQAFE 131 (140)
T ss_dssp TEEEEE--ETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEET--SSSCEEEEEEEESS--CHHHHHHHHHHHHH
T ss_pred CeEEEe--cCccccccccCCccceEEEEecCCCcceEEEEEeccC--CCCccccEeeeHhh--HHHHHHHHHHHHHH
Confidence 345555 334578888998876322222 223345566655553 33356778888887 66666666555543
No 27
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=34.24 E-value=2e+02 Score=23.82 Aligned_cols=55 Identities=13% Similarity=0.246 Sum_probs=35.7
Q ss_pred eCCcceEEEeeeecCCCceeccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHH
Q 027635 82 QSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFM 141 (221)
Q Consensus 82 ~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~ 141 (221)
...|..++.||+|..=--+.+...++|.+.|.|-+. ++ ....|+++ ++..|+...
T Consensus 68 D~~T~~ll~~~~i~rISfca~D~~d~r~FsyI~~~~-~~--~H~f~~~k--~~k~A~~i~ 122 (139)
T cd01215 68 DEKTGAVLHHHPVHRISFIARDSTDARAFGYVYGEP-GG--KHRFYGIK--TAQAADQVV 122 (139)
T ss_pred cCCCCcEEEeeceeeEEEEecCCCCCeEEEEEEEcC-CC--cEEEEEEE--hHHcchhhh
Confidence 345889999999987444555556778888888763 33 34555554 555554433
No 28
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=28.24 E-value=38 Score=35.41 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.6
Q ss_pred EEEeeeEEEEccCCCCCceeeeEEEEEE
Q 027635 41 LDLKAKLYRFDKDGNQWKERGAGTVKLL 68 (221)
Q Consensus 41 f~~RaKLyrfdke~~~WkERGvG~LkLl 68 (221)
+..+.=+|+||...+-|.+.|+|.||-.
T Consensus 205 ~gd~IPAW~FD~ktG~Wv~~G~G~Vk~~ 232 (807)
T PF10577_consen 205 HGDSIPAWRFDEKTGAWVKSGLGMVKRE 232 (807)
T ss_pred CCCeeeeeEecCCcceeEecceEEEEee
Confidence 4456678999998999999999999864
No 29
>PF15411 PH_10: Pleckstrin homology domain
Probab=27.81 E-value=1.2e+02 Score=24.01 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHH
Q 027635 124 DELFCIRFGSVENCKSFMEMV 144 (221)
Q Consensus 124 ~e~~~IRFksaE~A~~F~~~~ 144 (221)
...|.|||+|.+..+....+|
T Consensus 96 ~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 96 LENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CceEEEEeCCHHHHHHHHhhC
Confidence 678999999999988877653
No 30
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=27.78 E-value=2.1e+02 Score=19.69 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=22.2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHH
Q 027635 125 ELFCIRFGSVENCKSFMEMVHEVA 148 (221)
Q Consensus 125 e~~~IRFksaE~A~~F~~~~ee~~ 148 (221)
..|.+.+.|.+.......+|+.+.
T Consensus 80 ~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999875
No 31
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=26.49 E-value=17 Score=29.87 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=28.2
Q ss_pred CeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEEe
Q 027635 74 GKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114 (221)
Q Consensus 74 gk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a 114 (221)
|+-++.+|+|+..-..||....+.+.+.+ ++|.+.|+.
T Consensus 17 G~G~~fVR~DGkvf~FcssKC~k~f~~kR---nPRKlkWT~ 54 (131)
T PRK14891 17 GTGTMFVRKDGTVLHFVDSKCEKNYDLGR---EARDLEWTE 54 (131)
T ss_pred CCCcEEEecCCCEEEEecHHHHHHHHccC---CCccchhHH
Confidence 55577788888776677888877776554 578899984
No 32
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=23.81 E-value=3.1e+02 Score=20.33 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=42.4
Q ss_pred CeEEEEEEeCCcceEEEeeeecCCCce-eccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027635 74 GKVRLVMRQSKTLKICANHLVLPMMSV-QEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAE 149 (221)
Q Consensus 74 gk~RLVMR~d~t~KV~lN~~I~~~m~l-~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e 149 (221)
+.+||+=. .++.++.+|+|.. +.+ .....+.+.+.|.+.+... ....-++++..+. |+.+...|..+-+
T Consensus 51 ~gv~l~d~--~~~~~l~~~~l~~-Is~~~~~~~~~~~F~~i~~~~~~--~~~~CHvF~c~~~--a~~i~~~l~~af~ 120 (123)
T cd00934 51 DGVKLIDP--KTKEVLASHPIRR-ISFCAADPDDLRIFAFIAREPGS--SRFECHVFKCEKV--AEPIALTLGQAFQ 120 (123)
T ss_pred CcEEEEeC--CCCcEEEeeccce-EEEEECCCCCCcEEEEEEEcCCC--CcEEEEEEEeCch--HHHHHHHHHHHHH
Confidence 34454333 3467888887643 333 2223345667777666432 3577888888877 8888888877654
No 33
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=22.59 E-value=4.5e+02 Score=21.76 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=42.8
Q ss_pred CCeEEEEEEe----------CCcceEEEeeeecCCCceeccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHH
Q 027635 73 TGKVRLVMRQ----------SKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFME 142 (221)
Q Consensus 73 tgk~RLVMR~----------d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~ 142 (221)
...+||+.+. +-+..+++||+|..=--+.......+.+.+.|-|-+. ....-+++.......|....-
T Consensus 51 ~~Gv~v~d~k~~~~~~~~~~~~tk~li~~~~i~rISf~a~D~~~~k~FayIakd~~~--~~~~ChvF~~~k~~~A~~I~~ 128 (140)
T cd01270 51 VDGVKVVLKKKKRKKKNWTWDESKILVMNHPIYRIFYVSHDSQDLKIFSYIARDGAS--NTFKCNVFKSHKKSQAMRIVR 128 (140)
T ss_pred cCcEEEEecccccccccccccCcccEEEecCeeEEEEeecCCCCCcEEEEEecCCCC--CceEEEEEEEcChhhHHHHHH
Confidence 3457777653 3467899999997532333334456667777776322 234445555544456777665
Q ss_pred HHHHH
Q 027635 143 MVHEV 147 (221)
Q Consensus 143 ~~ee~ 147 (221)
.|-+|
T Consensus 129 TIGqA 133 (140)
T cd01270 129 TVGQA 133 (140)
T ss_pred HHHHH
Confidence 55544
No 34
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=22.14 E-value=1e+02 Score=23.27 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.2
Q ss_pred CCeEEEEEEeCCcceEEEeeeecCCC
Q 027635 73 TGKVRLVMRQSKTLKICANHLVLPMM 98 (221)
Q Consensus 73 tgk~RLVMR~d~t~KV~lN~~I~~~m 98 (221)
....||++|+|. +++||.+++-+.
T Consensus 29 GNv~Ri~Ikk~~--~tll~iPlt~gv 52 (84)
T PF14242_consen 29 GNVTRIIIKKDD--KTLLDIPLTAGV 52 (84)
T ss_pred cCeEEEEEEcCC--eEEEEeeeehHH
Confidence 357899999986 999999998853
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.43 E-value=91 Score=30.80 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=23.3
Q ss_pred CCCceeeEEEEEeCCHHHHHHHHHHHHHH
Q 027635 119 DGELKDELFCIRFGSVENCKSFMEMVHEV 147 (221)
Q Consensus 119 dge~k~e~~~IRFksaE~A~~F~~~~ee~ 147 (221)
||.+-.-+.+|+|++..+|+.|+..|.-.
T Consensus 110 d~~pnrymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 110 DGMPNRYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred cCCCceEEEEEEeccchhHHHHHHHcCCC
Confidence 45445668899999999999999988643
No 36
>PF09200 Monellin: Monellin; InterPro: IPR015283 Monellin, a protein produced by the West African plant Dioscoreophyllum cumminsii (Serendipity berry), is approximately 70,000 times sweeter than sucrose on a molar basis. The protein adopts an alpha-beta structure, with a cystatin-like fold, where each helix packs against a coiled antiparallel beta-sheet []. ; PDB: 3PXM_A 1IV7_A 3PYJ_A 1KRL_D 4MON_B 2O9U_X 3Q2P_C 3MON_F 1MOL_B 1IV9_A ....
Probab=21.34 E-value=29 Score=23.09 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=20.1
Q ss_pred eeeEEEEccCCCCCceeeeEEEEEEEe
Q 027635 44 KAKLYRFDKDGNQWKERGAGTVKLLKH 70 (221)
Q Consensus 44 RaKLyrfdke~~~WkERGvG~LkLlk~ 70 (221)
.-+||+|+- +..+|-||-|-|++|..
T Consensus 15 s~~L~r~~i-~Ed~K~~~~~~L~FN~~ 40 (43)
T PF09200_consen 15 SDKLFRADI-SEDYKTRGRKLLRFNGP 40 (43)
T ss_dssp CCCCCCCCC-CCCCCCTCCCCECEEEC
T ss_pred hhhhhheec-cccccccceeEEEccCc
Confidence 347888875 35899999999998754
No 37
>PF13298 LigD_N: DNA polymerase Ligase (LigD); PDB: 3TA5_A 3P4H_A 3TA7_A 3N9B_A 3N9D_A 2LJ6_A 3P43_A.
Probab=20.97 E-value=1.6e+02 Score=23.14 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=19.0
Q ss_pred eeeeEEEEEEEeCCCCeEEEE----EEeCCcceEEEe
Q 027635 59 ERGAGTVKLLKHKVTGKVRLV----MRQSKTLKICAN 91 (221)
Q Consensus 59 ERGvG~LkLlk~ketgk~RLV----MR~d~t~KV~lN 91 (221)
++|.|.+.|... |.|..+ -+.++.+++.|+
T Consensus 60 ~yG~G~v~iwD~---Gty~~~~~~~~~~~~~l~~~L~ 93 (105)
T PF13298_consen 60 EYGAGTVIIWDR---GTYEPLDPEDGLDEGKLKFRLH 93 (105)
T ss_dssp STT-EEEEEEEE---EEEEEE-HHHEEETTEEEEEEE
T ss_pred CCCceEEEEEec---cEEEECCccccccCCeEEEEEE
Confidence 578888888766 677766 345555555544
No 38
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=20.90 E-value=3.6e+02 Score=20.08 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=21.8
Q ss_pred eeEEEEEEEeCCCCeEEEEEEeCCc-ceEEEeeeecCC
Q 027635 61 GAGTVKLLKHKVTGKVRLVMRQSKT-LKICANHLVLPM 97 (221)
Q Consensus 61 GvG~LkLlk~ketgk~RLVMR~d~t-~KV~lN~~I~~~ 97 (221)
.-|.|.|.+.. ++-+.+.=+.-.+ +.+-.+..|.|+
T Consensus 15 ~KG~l~l~~~~-d~l~~f~W~~r~~~~~~e~d~il~pg 51 (85)
T PF04683_consen 15 RKGLLYLYKSE-DGLLHFCWKPRDTTGEVEDDLILFPG 51 (85)
T ss_dssp S-EEEEEEETT-TS-EEEEEEETST---EEEEEEE-TT
T ss_pred CCEEEEEEECC-CCeEEEEEEEcCcCCCcccceecCCC
Confidence 35778887765 4777776665555 778888888775
Done!