Query 027635
Match_columns 221
No_of_seqs 172 out of 628
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 21:58:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k5d_B RAN-specific GTPase-act 100.0 4.4E-54 1.5E-58 368.7 18.1 174 6-179 14-196 (201)
2 4hat_B RAN-specific GTPase-act 100.0 9.7E-51 3.3E-55 330.6 17.2 137 16-152 1-138 (140)
3 3m1i_B RAN-specific GTPase-act 100.0 2.4E-50 8.1E-55 343.0 17.6 146 7-152 43-189 (191)
4 1rrp_B Nuclear pore complex pr 100.0 4.2E-48 1.4E-52 312.0 15.3 132 18-149 1-133 (134)
5 1xke_A RAN-binding protein 2; 100.0 4.5E-44 1.6E-48 287.3 17.6 123 31-153 1-123 (130)
6 3n7c_A ABR034WP; nuclear pore 100.0 8.2E-41 2.8E-45 269.0 14.8 122 28-152 1-123 (130)
7 2y8g_A Ranbp3-B, RAN-binding p 100.0 2.7E-40 9.3E-45 268.1 13.0 123 25-151 2-128 (138)
8 2crf_A RAN binding protein 3; 100.0 1.1E-39 3.7E-44 267.9 16.2 128 20-151 9-140 (150)
9 2ec1_A Nucleoporin 50 kDa; ran 100.0 2.9E-38 9.8E-43 252.4 13.6 117 29-149 4-124 (125)
10 1qc6_A EVH1 domain from ENA/VA 99.7 4E-17 1.4E-21 130.5 14.0 108 36-153 2-114 (130)
11 1ddw_A GLGF-domain protein hom 99.5 3.3E-13 1.1E-17 106.9 15.3 107 36-152 2-111 (120)
12 1i2h_A PSD-ZIP45(homer-1C/VESL 99.4 1.9E-12 6.6E-17 108.0 14.0 107 36-152 7-116 (168)
13 1evh_A WH1 domain, protein (ME 99.3 5.6E-11 1.9E-15 92.8 14.3 106 36-151 2-111 (112)
14 1egx_A VAsp, vasodilator-stimu 99.3 5.6E-11 1.9E-15 93.3 13.6 106 37-152 3-114 (115)
15 1xod_A Spred1; sprouty, EVH1, 99.1 8.4E-10 2.9E-14 87.0 11.4 107 36-152 2-116 (118)
16 2jp2_A Spred-2, sprouty-relate 99.1 1.9E-09 6.6E-14 85.9 13.2 108 35-152 10-125 (126)
17 3syx_A Sprouty-related, EVH1 d 98.8 1.4E-07 4.7E-12 75.7 13.3 104 39-152 12-123 (130)
18 1mke_A WIP - N-WAsp, fusion pr 97.5 0.0027 9.3E-08 51.9 13.6 102 38-152 41-144 (152)
19 2ifs_A N-WAsp, wiskott-aldrich 97.5 0.0024 8.2E-08 53.0 12.9 101 39-152 59-161 (169)
20 2lyd_A Decapping protein 1; DC 95.8 0.4 1.4E-05 38.0 14.1 100 38-149 30-132 (134)
21 2oqb_A Histone-arginine methyl 94.8 1.1 3.8E-05 35.0 13.3 76 63-149 32-107 (117)
22 2qkl_A DCP1 protein, SPBC3B9.2 94.1 1 3.5E-05 35.4 12.1 98 38-148 25-125 (127)
23 1tqz_A Necap1; endocytosis, st 93.8 0.62 2.1E-05 37.2 10.2 112 36-152 7-131 (133)
24 1q67_A Decapping protein invol 50.0 1.2E+02 0.0042 25.9 10.2 27 124-150 198-224 (231)
25 3so6_A LDL receptor adaptor pr 44.8 93 0.0032 23.1 8.8 79 65-149 46-124 (137)
26 2lg1_A A-kinase anchor protein 32.3 1.9E+02 0.0066 23.0 9.1 29 124-152 147-175 (185)
27 3ka5_A Ribosome-associated pro 32.0 56 0.0019 22.7 4.0 23 65-87 29-52 (65)
28 3lyv_A Ribosome-associated fac 30.6 56 0.0019 22.7 3.8 19 65-83 30-48 (66)
29 3k2t_A LMO2511 protein; lister 29.7 59 0.002 21.8 3.7 22 65-86 29-51 (57)
30 1a7g_E E2 DBD, regulatory prot 29.3 34 0.0012 24.7 2.5 33 109-144 35-67 (82)
31 2q79_A Regulatory protein E2; 26.0 30 0.001 25.7 1.8 33 109-144 34-66 (93)
32 1r8h_A Regulatory protein E2; 25.0 35 0.0012 25.0 2.0 33 109-144 37-69 (87)
33 1y5o_A TFB1, RNA polymerase II 24.0 2.5E+02 0.0084 21.6 10.2 31 121-151 81-111 (115)
34 1pfj_A TFIIH basal transcripti 23.3 2.4E+02 0.0083 21.3 8.7 77 63-152 22-104 (108)
No 1
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=100.00 E-value=4.4e-54 Score=368.69 Aligned_cols=174 Identities=45% Similarity=0.754 Sum_probs=136.1
Q ss_pred CCCCCCccCCCCccceeeeccccccccCcccceeEEEEeeeEEEE--ccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeC
Q 027635 6 EGDHREEEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQS 83 (221)
Q Consensus 6 ~~~~~~ee~~~~~f~Piv~L~~vev~tGEEdEe~lf~~RaKLyrf--dke~~~WkERGvG~LkLlk~ketgk~RLVMR~d 83 (221)
.++++++++++++|.|||.|+.++|.||||||++||++|||||+| ++.+++|++||+|+||||+|+.++++|||||+|
T Consensus 14 ~~~~~~~~~~~~~f~Piv~L~~vev~TGEEdEe~lf~~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~t~k~RlvMR~d 93 (201)
T 1k5d_B 14 STENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRD 93 (201)
T ss_dssp --------CCCCCCCCSCCCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEET
T ss_pred ccccccccCCCCccccccccccccccCCCccceEEEEEeeeEEEecccccCCCccccceEEEEEEEcCCCCcEEEEEEEC
Confidence 335677899999999999999999999999999999999999999 666789999999999999999999999999999
Q ss_pred CcceEEEeeeecCCCceeccCCCCceEEEEe-eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhchhc------c
Q 027635 84 KTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKE------E 156 (221)
Q Consensus 84 ~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a-~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~~~~------~ 156 (221)
+++||||||+|+|+|+|+++.+++++|+|++ .||+||.+++++|+|||+++++|+.|+.+|++|++.+.... +
T Consensus 94 ~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~~~~~~~~~~~~ 173 (201)
T 1k5d_B 94 KTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGK 173 (201)
T ss_dssp TTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CcceEEEeeEecCCceeeecCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 9999999999999999999999999999997 89999999999999999999999999999999999877541 4
Q ss_pred ccchhHHHHHHhccCcccccccc
Q 027635 157 NKDASATAGLLEKLSVEENKTED 179 (221)
Q Consensus 157 ~~~~~~~~~~~e~l~~~~~~~~~ 179 (221)
++.++++|++|++|||.+.++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
T 1k5d_B 174 NDHAEKVAEKLEALSVKEETKED 196 (201)
T ss_dssp -----------------------
T ss_pred cchhHHHHhHHhhccccccccch
Confidence 56789999999999998876543
No 2
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=100.00 E-value=9.7e-51 Score=330.61 Aligned_cols=137 Identities=48% Similarity=0.806 Sum_probs=115.3
Q ss_pred CCccceeeeccccccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCCcceEEEeeeec
Q 027635 16 GAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVL 95 (221)
Q Consensus 16 ~~~f~Piv~L~~vev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~ 95 (221)
++||+|||+|++|++.||||||++||++|||||+|+++.++|++||+|+||||+|+++|++|||||+|++++|||||+|+
T Consensus 1 ~~~f~pvv~l~~vev~tGEE~E~~lf~~raKLf~f~~~~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~ 80 (140)
T 4hat_B 1 DIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIA 80 (140)
T ss_dssp ------------------CTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECC
T ss_pred CCcccceeEcceecccCCCcCeeEEEEEeEEEEEEcCCCCCcccccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEec
Confidence 58999999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCceEEEEe-eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 96 PMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 96 ~~m~l~~~~~s~ks~vw~a-~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
|+|+++++.+++++|+|++ .||+||++++++|+|||+|+++|++|+++|++|++.++
T Consensus 81 ~~m~~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~n~ 138 (140)
T 4hat_B 81 PEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINK 138 (140)
T ss_dssp TTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEeEcCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999995 79999999999999999999999999999999999875
No 3
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-50 Score=342.99 Aligned_cols=146 Identities=45% Similarity=0.755 Sum_probs=124.3
Q ss_pred CCCCCccCCCCccceeeeccccccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCCcc
Q 027635 7 GDHREEEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTL 86 (221)
Q Consensus 7 ~~~~~ee~~~~~f~Piv~L~~vev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~t~ 86 (221)
.++.+++++++||.|||+|++|++.||||||++||++|||||+|+++.++|++||+|+||||+|+++|++|||||+|+++
T Consensus 43 ~~~~~ee~~~~~f~Pvv~L~~vev~tGEEdEe~lf~~RaKLf~f~~~~~~WKERGvG~lkilk~ket~k~RllMR~d~~~ 122 (191)
T 3m1i_B 43 EGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTL 122 (191)
T ss_dssp ------------------CCCCCCCCSCTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTC
T ss_pred cccccccCCCCCcccceecccccccCCCcceeeeeEEeeEEEEEecCCCCccceeEEEEEEEEcCCCCeEEEEEEecCcc
Confidence 44556789999999999999999999999999999999999999987789999999999999999999999999999999
Q ss_pred eEEEeeeecCCCceeccCCCCceEEEEe-eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 87 KICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 87 KV~lN~~I~~~m~l~~~~~s~ks~vw~a-~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
+|||||+|+|+|+|+++.+++++|+|++ .||++|.+++++|+|||+|+++|++|+++|++|++.|+
T Consensus 123 kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~nk 189 (191)
T 3m1i_B 123 KICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINK 189 (191)
T ss_dssp CEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeecCCCcEEeECCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999997 69999999999999999999999999999999999875
No 4
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=4.2e-48 Score=311.96 Aligned_cols=132 Identities=47% Similarity=0.815 Sum_probs=127.8
Q ss_pred ccceeeecc-ccccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCCcceEEEeeeecC
Q 027635 18 QVAPIVKLE-EVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLP 96 (221)
Q Consensus 18 ~f~Piv~L~-~vev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~ 96 (221)
||+|||.|| +|++.||||||++||++|||||+|+++.++|++||+|+||||+|++++++|||||+|++++|||||+|++
T Consensus 1 ~~~pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~ 80 (134)
T 1rrp_B 1 HFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISP 80 (134)
T ss_dssp CCCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCS
T ss_pred CcccceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecC
Confidence 799999998 7999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027635 97 MMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAE 149 (221)
Q Consensus 97 ~m~l~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e 149 (221)
+|+++++.+++++|+|++.|++|+++++++|+|||+++++|++|+++|++|++
T Consensus 81 ~m~~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~~~ 133 (134)
T 1rrp_B 81 DMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQS 133 (134)
T ss_dssp SCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CceEeecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence 99999998899999999999999999999999999999999999999999864
No 5
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=4.5e-44 Score=287.27 Aligned_cols=123 Identities=37% Similarity=0.726 Sum_probs=118.6
Q ss_pred ccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceE
Q 027635 31 TTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 110 (221)
Q Consensus 31 ~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~ 110 (221)
.||||||++||++|||||+|+++.++|++||+|+||||+|++++++|||||+|++++|||||+|+|+|+++++.+++++|
T Consensus 1 gtGEE~E~~l~~~raKL~~~~~~~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~ 80 (130)
T 1xke_A 1 GSGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAW 80 (130)
T ss_dssp CCSSSCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCE
T ss_pred CCCCcceEEEEEEEEEEEEEcCCCCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEE
Confidence 48999999999999999999987889999999999999999999999999999999999999999999999998999999
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhch
Q 027635 111 VWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 153 (221)
Q Consensus 111 vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~~ 153 (221)
+|++.||+|+++++++|+|||+++++|++|+++|++|++.+..
T Consensus 81 ~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~~~ 123 (130)
T 1xke_A 81 MWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLD 123 (130)
T ss_dssp EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998753
No 6
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=100.00 E-value=8.2e-41 Score=268.96 Aligned_cols=122 Identities=28% Similarity=0.434 Sum_probs=100.8
Q ss_pred cccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCC-CCeEEEEEEeCCcceEEEeeeecCCCceeccCCC
Q 027635 28 VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKV-TGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGN 106 (221)
Q Consensus 28 vev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ke-tgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s 106 (221)
|+|.||||||++||++|||||+|++++++|++||+|+||||+|++ ++++|||||+|++++|||||+|+|+|+++++.++
T Consensus 1 iev~tGEE~E~~lf~~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~ 80 (130)
T 3n7c_A 1 MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDAD 80 (130)
T ss_dssp ---------CEEEEEEEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTT
T ss_pred CcccCCCcCeeEEEEEEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCC
Confidence 579999999999999999999999888899999999999999995 8999999999999999999999999999999888
Q ss_pred CceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 107 DKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 107 ~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
+++|+|.+. ++|| ++++|+|||+|+++|++|+++|+++++-+.
T Consensus 81 ~~~~v~~~~-~~dg--k~~~~~lrfks~e~A~~f~~~iee~~~~~~ 123 (130)
T 3n7c_A 81 NENLIKWPI-ITDG--KLETFIIKVKQKADGRRLVGAVADAQQAME 123 (130)
T ss_dssp CTTEEEEEE-EETT--EEEEEEEECSSHHHHHHHHHHHHHHHHHC-
T ss_pred CccEEEEEe-cCCC--ceEEEEEEECCHHHHHHHHHHHHHHHhhhc
Confidence 888888753 3565 689999999999999999999999998764
No 7
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=100.00 E-value=2.7e-40 Score=268.11 Aligned_cols=123 Identities=28% Similarity=0.436 Sum_probs=100.0
Q ss_pred ccccccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCC----CCeEEEEEEeCCcceEEEeeeecCCCce
Q 027635 25 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKV----TGKVRLVMRQSKTLKICANHLVLPMMSV 100 (221)
Q Consensus 25 L~~vev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ke----tgk~RLVMR~d~t~KV~lN~~I~~~m~l 100 (221)
|++|+|.||||+|++||++|||||+|+++.++|++||+|+||||+|+. ++++|||||+|++++|||||+|+|+|++
T Consensus 2 l~~v~v~tGEE~E~~~~~~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~ 81 (138)
T 2y8g_A 2 AMKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQI 81 (138)
T ss_dssp ------------CEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCE
T ss_pred CCcccccCCCcCcEEEEEEEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCcee
Confidence 678999999999999999999999999878899999999999999974 4899999999999999999999999999
Q ss_pred eccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHh
Q 027635 101 QEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQ 151 (221)
Q Consensus 101 ~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~ 151 (221)
++ +++++|+|+++|++++. +.+|+|||+++++|+.|...+++++...
T Consensus 82 ~~--~~~k~~~~~~~d~~d~~--~~~~lirfk~~e~a~lf~~~~~~i~~lk 128 (138)
T 2y8g_A 82 DK--ASEKSIRITAMDTEDQG--VKVFLISASSKDTGQLYAALHHRILALR 128 (138)
T ss_dssp EE--EETTEEEEECCC--CCC--CCEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred ec--CCCCEEEEEEecCCCCc--eEEEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 86 46789999999998765 5699999999999999999998888643
No 8
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=1.1e-39 Score=267.94 Aligned_cols=128 Identities=31% Similarity=0.461 Sum_probs=115.7
Q ss_pred ceeeeccccccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeC----CCCeEEEEEEeCCcceEEEeeeec
Q 027635 20 APIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK----VTGKVRLVMRQSKTLKICANHLVL 95 (221)
Q Consensus 20 ~Piv~L~~vev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~k----etgk~RLVMR~d~t~KV~lN~~I~ 95 (221)
.|+..|++|++.||||+|++||++|||||+|++..++|++||+|+||||+|+ .++++|||||+|++++|||||+|+
T Consensus 9 ~~~~~l~~vev~tGEE~E~~l~~~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~ 88 (150)
T 2crf_A 9 ARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLW 88 (150)
T ss_dssp SCCSCSSCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECC
T ss_pred ccccCcccccccCCCcCeEEEEEEEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeecc
Confidence 3455678999999999999999999999999988889999999999999997 368999999999999999999999
Q ss_pred CCCceeccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHh
Q 027635 96 PMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQ 151 (221)
Q Consensus 96 ~~m~l~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~ 151 (221)
|+|++.+ +++++|+|+++|++++. +.+|+|||+++++|+.|...+++++...
T Consensus 89 ~~m~~~~--~~~k~~~~~~~d~~d~~--~~~~lirfk~~e~a~lf~~~~e~i~~l~ 140 (150)
T 2crf_A 89 AQMQIDK--ASEKSIHITAMDTEDQG--VKVFLISASSKDTGQLYAALHHRILALR 140 (150)
T ss_dssp TTCCEEC--CSSSEEEEEEEBSSSCC--EEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeec--CCCCEEEEEeecCCCCc--eEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 9999975 57899999999998764 6799999999999999998888877544
No 9
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=252.41 Aligned_cols=117 Identities=23% Similarity=0.332 Sum_probs=102.1
Q ss_pred ccccCcccceeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCeEEEEEEeCCc-ceEEEeeeecCCCceeccCCCC
Q 027635 29 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKT-LKICANHLVLPMMSVQEHAGND 107 (221)
Q Consensus 29 ev~tGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RLVMR~d~t-~KV~lN~~I~~~m~l~~~~~s~ 107 (221)
...||||||++||++|||||+|+. ++|++||+|+||||+|+ ++++|||||+|++ ++|||||+|+++|+++++ +++
T Consensus 4 ~~~tgEE~E~~lf~~raKLf~~~~--~~WkERGvG~lki~~~k-~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~-g~~ 79 (125)
T 2ec1_A 4 GSSGEVKEEDAFYSKKCKLFYKKD--NEFKEKGIGTLHLKPTA-NQKTQLLVRADTNLGNILLNVLIPPNMPCTRT-GKN 79 (125)
T ss_dssp ----CCCCCSCSEEEEEEEEEECS--SSEEEEEEEEEEEEECS-SSSEEEEEEESSSSCCBSCCEECCSSCCEECC-TTT
T ss_pred CCcCCccCceeEEEEeeEEEEecC--CCcccccEEEEEeeecC-CCcEEEEEEecCCCCEEEEeeEEcCCCeEEec-CCC
Confidence 357999999999999999999965 79999999999999997 7999999999996 799999999999999997 777
Q ss_pred ceEEEEe-eecCCCC--ceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027635 108 KSCVWHA-ADYADGE--LKDELFCIRFGSVENCKSFMEMVHEVAE 149 (221)
Q Consensus 108 ks~vw~a-~D~adge--~k~e~~~IRFksaE~A~~F~~~~ee~~e 149 (221)
+.|+|+. .+++||. +++++|+|||+++++|++|+++|+++++
T Consensus 80 ~~~~~~~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 80 NVLIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp EEEEEECCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 8888863 2334775 5699999999999999999999999975
No 10
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=99.74 E-value=4e-17 Score=130.51 Aligned_cols=108 Identities=14% Similarity=0.318 Sum_probs=94.5
Q ss_pred cceeEEEEeeeEEEEccCCCCCceeeeE-----EEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceE
Q 027635 36 DEDAILDLKAKLYRFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 110 (221)
Q Consensus 36 dEe~lf~~RaKLyrfdke~~~WkERGvG-----~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~ 110 (221)
.|.+|+++||+||.||+..+.|..+|.| .|+|++|..++.+|||+|+.+..+||+|+.|+++|.|.+ .+++.+
T Consensus 2 ~E~~i~~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~--~~~~Fh 79 (130)
T 1qc6_A 2 SEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGLKYNQ--ATPTFH 79 (130)
T ss_dssp CCEEEEEEEEEEEEEETTTTEEEECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTTCEEEE--EETTEE
T ss_pred CceeEEEEEEEEEEECCCCCceeECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCCcEEec--cCCeeE
Confidence 3789999999999999888899999998 899999998899999999988999999999999999987 466788
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhch
Q 027635 111 VWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 153 (221)
Q Consensus 111 vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~~ 153 (221)
.|. ++ ...|.|+|.+.++|+.|+..|+++.+.+..
T Consensus 80 ~w~-----~~---~~~~GL~F~se~eA~~F~~~~~~al~~~~~ 114 (130)
T 1qc6_A 80 QWR-----DA---RQVYGLNFASKEEATTFSNAMLFALNIMNS 114 (130)
T ss_dssp EEE-----CS---SCEEEEEESCHHHHHHHHHHHHHHHHHTC-
T ss_pred EEE-----cC---CEEEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 885 22 258999999999999999999999988764
No 11
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=99.53 E-value=3.3e-13 Score=106.91 Aligned_cols=107 Identities=20% Similarity=0.374 Sum_probs=91.5
Q ss_pred cceeEEEEeeeEEEEccCCC-CCce--eeeEEEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEE
Q 027635 36 DEDAILDLKAKLYRFDKDGN-QWKE--RGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 112 (221)
Q Consensus 36 dEe~lf~~RaKLyrfdke~~-~WkE--RGvG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw 112 (221)
.|.+||..||.||.+|+.++ .|.. .|.|.|.|+++...+.+||+.|++ .++++|+.|+++|.|.+ .++..+.|
T Consensus 2 ~E~~i~~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~~~~yRIv~~~~--~~vv~n~~i~~~l~y~~--a~p~FhqW 77 (120)
T 1ddw_A 2 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNMTFTK--TSQKFGQW 77 (120)
T ss_dssp CEEEEEEEEEEEEEECTTTSCSEEESCSSCEEEEEEEETTTTEEEEEEEET--TEEEEEEECCTTCCCEE--CSSSEEEE
T ss_pred CceEEEEEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCCCCEEEEEEccC--CEEEEeCEecCCcEEee--CCccccEE
Confidence 37899999999999998764 9999 455566688998888999999984 69999999999999987 56788888
Q ss_pred EeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 113 HAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 113 ~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
..-+ ....|-+.|.|+++|+.|...|+++.+.+.
T Consensus 78 ~d~~------~~~~~GLnF~s~~eA~~F~~~~~~~~~~l~ 111 (120)
T 1ddw_A 78 ADSR------ANTVYGLGFSSEHHLSKFAEKFQEFKEAAR 111 (120)
T ss_dssp EETT------TTEEEEEECSSHHHHHHHHHHHHHHHHHHC
T ss_pred EcCC------CcEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 8321 136899999999999999999999999886
No 12
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=99.44 E-value=1.9e-12 Score=107.97 Aligned_cols=107 Identities=20% Similarity=0.371 Sum_probs=90.6
Q ss_pred cceeEEEEeeeEEEEccCCC-CCceee--eEEEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEE
Q 027635 36 DEDAILDLKAKLYRFDKDGN-QWKERG--AGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 112 (221)
Q Consensus 36 dEe~lf~~RaKLyrfdke~~-~WkERG--vG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw 112 (221)
.|.+||..||.||.+|+..+ .|...| .|.|.|+++...+.+||+.|++ .+|++|+.|+++|.|.+ .++..+.|
T Consensus 7 ~E~~I~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~rnsyRIvg~~d--~kvvinc~I~~~l~Y~k--asp~FHqW 82 (168)
T 1i2h_A 7 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNMTFTK--TSQKFGQW 82 (168)
T ss_dssp SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEEETTTTEEEEEEEET--TEEEEEEECCTTCCEEE--EETTEEEE
T ss_pred cceeEEEEEEEEEEECCCCCCceeecCCCCeEEEEEEcCCCCEEEEEEccC--CEEEEecEecCCcEEee--CCccccee
Confidence 47899999999999998764 999944 4555588888878999999985 69999999999999987 45678888
Q ss_pred EeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 113 HAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 113 ~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
..-+ ....|-|.|.+.++|+.|...|+++++.+.
T Consensus 83 ~d~~------~~~v~GLnF~Se~eA~~F~~~~~~ale~l~ 116 (168)
T 1i2h_A 83 ADSR------ANTVYGLGFSSEHHLSKFAEKFQEFKEAAR 116 (168)
T ss_dssp EETT------TTEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred ecCC------CcEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 8421 136899999999999999999999998876
No 13
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=99.31 E-value=5.6e-11 Score=92.85 Aligned_cols=106 Identities=19% Similarity=0.389 Sum_probs=90.4
Q ss_pred cceeEEEEeeeEEEEccCCCCCceee--eEE--EEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEE
Q 027635 36 DEDAILDLKAKLYRFDKDGNQWKERG--AGT--VKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV 111 (221)
Q Consensus 36 dEe~lf~~RaKLyrfdke~~~WkERG--vG~--LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~v 111 (221)
.|..|++.||.+|.+|+.++.|...| .|- |.|.++...+.|||+.|+-+..++++|+.|.++|.+.. .++....
T Consensus 2 ~e~~i~~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~--~~p~Fh~ 79 (112)
T 1evh_A 2 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQ--ATQTFHQ 79 (112)
T ss_dssp CEEEEEEEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBC--CSSSEEE
T ss_pred CceeEEEEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCceEEe--cCcccee
Confidence 37899999999999999888999987 343 89999987789999999877889999999999999876 4566667
Q ss_pred EEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHh
Q 027635 112 WHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQ 151 (221)
Q Consensus 112 w~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~ 151 (221)
|.. + ...|-+-|.+.++|..|...|+++.+.+
T Consensus 80 w~~-----~---~~~~GLnF~se~eA~~F~~~v~~al~~l 111 (112)
T 1evh_A 80 WRD-----A---RQVYGLNFGSKEDANVFASAMMHALEVL 111 (112)
T ss_dssp EEC-----S---SCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred Eec-----C---CEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 762 2 1479999999999999999999998765
No 14
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=99.30 E-value=5.6e-11 Score=93.29 Aligned_cols=106 Identities=17% Similarity=0.367 Sum_probs=91.7
Q ss_pred ceeEEEEeeeEEEEccCCCCCceeee---E--EEEEEEeCCCCeEEEEEEeCC-cceEEEeeeecCCCceeccCCCCceE
Q 027635 37 EDAILDLKAKLYRFDKDGNQWKERGA---G--TVKLLKHKVTGKVRLVMRQSK-TLKICANHLVLPMMSVQEHAGNDKSC 110 (221)
Q Consensus 37 Ee~lf~~RaKLyrfdke~~~WkERGv---G--~LkLlk~ketgk~RLVMR~d~-t~KV~lN~~I~~~m~l~~~~~s~ks~ 110 (221)
|.+|++.||.||.+|+.++.|...|. | .|.|.++...+.|||+.|+-+ ..++++|+.|.++|.+.. .++...
T Consensus 3 e~~i~~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~--~~p~FH 80 (115)
T 1egx_A 3 ETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQ--ATPNFH 80 (115)
T ss_dssp SCEEEEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCC--SSTTEE
T ss_pred ceeEEEEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCceEEe--cCccce
Confidence 68899999999999988888999886 4 599999988889999999977 889999999999999876 456667
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 111 VWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 111 vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
.|.. + ...|-+.|.+.++|..|...|+++.+.++
T Consensus 81 ~w~~-----~---~~~~GLnF~se~eA~~F~~~v~~al~~l~ 114 (115)
T 1egx_A 81 QWRD-----A---RQVWGLNFGSKEDAAQFAAGMASALEALE 114 (115)
T ss_dssp EEES-----S---SCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred EEec-----C---CEEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 7762 2 15799999999999999999999988763
No 15
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=99.09 E-value=8.4e-10 Score=86.96 Aligned_cols=107 Identities=15% Similarity=0.245 Sum_probs=83.7
Q ss_pred cceeEEEEeeeEEEEccCCCCCceeeeEE---EEEEEeC-----CCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCC
Q 027635 36 DEDAILDLKAKLYRFDKDGNQWKERGAGT---VKLLKHK-----VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGND 107 (221)
Q Consensus 36 dEe~lf~~RaKLyrfdke~~~WkERGvG~---LkLlk~k-----etgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ 107 (221)
+|..|+..||.+|.+|+.++.|...|.|- +.|..++ ..+.|||+.|+-+..++++|+.|.++|.+.. .++
T Consensus 2 ~~~~i~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~--~~p 79 (118)
T 1xod_A 2 SDDSYARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNK--VTP 79 (118)
T ss_dssp ---CCEEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEE--EET
T ss_pred CCccEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEe--cCC
Confidence 36789999999999998888999987655 5666553 3467999999977789999999999999876 345
Q ss_pred ceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 108 KSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 108 ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
....|.. . -..|-+.|.+.++|..|...|.++.+.+.
T Consensus 80 ~Fh~w~~-----~---~~~~GL~F~se~eA~~F~~~v~~al~~l~ 116 (118)
T 1xod_A 80 TFHHWRI-----G---DKKFGLTFQSPADARAFDRGIRRAIEDLS 116 (118)
T ss_dssp TEEEEEE-----T---TEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred cceEEEe-----C---CEEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 5666763 1 24599999999999999999999988764
No 16
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.09 E-value=1.9e-09 Score=85.89 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=88.5
Q ss_pred ccceeEEEEeeeEEEEccCCCCCceeeeEE---EEEEEeC-----CCCeEEEEEEeCCcceEEEeeeecCCCceeccCCC
Q 027635 35 EDEDAILDLKAKLYRFDKDGNQWKERGAGT---VKLLKHK-----VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGN 106 (221)
Q Consensus 35 EdEe~lf~~RaKLyrfdke~~~WkERGvG~---LkLlk~k-----etgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s 106 (221)
..+..|+..||-||.+|+..+.|...|.|- +.|..++ ..+.|||+.++-+..++++|+.|.++|.+.. .+
T Consensus 10 ~~~~~i~~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~--~~ 87 (126)
T 2jp2_A 10 DDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTK--AN 87 (126)
T ss_dssp SCCSEEEEEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEE--EE
T ss_pred CCcceEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEe--cC
Confidence 357899999999999998788999988776 5566554 3467999999977789999999999999876 34
Q ss_pred CceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 107 DKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 107 ~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
+....|.. .. ..|-+.|.+.++|..|..+|.++.+.+.
T Consensus 88 p~FH~w~~-----~~---~~~GLnF~se~eA~~F~~~v~~al~~l~ 125 (126)
T 2jp2_A 88 PTFHHWKV-----DN---RKFGLTFQSPADARAFDRGVRKAIEDLI 125 (126)
T ss_dssp TTEEEEEC-----SS---SEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEc-----CC---EEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 55666763 21 3599999999999999999999988763
No 17
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=98.78 E-value=1.4e-07 Score=75.71 Aligned_cols=104 Identities=12% Similarity=0.188 Sum_probs=84.7
Q ss_pred eEEEEeeeEEEEccCCCCCceee---eEEEEEEEeCC-----CCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceE
Q 027635 39 AILDLKAKLYRFDKDGNQWKERG---AGTVKLLKHKV-----TGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 110 (221)
Q Consensus 39 ~lf~~RaKLyrfdke~~~WkERG---vG~LkLlk~ke-----tgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~ 110 (221)
..|..||-+|.||+.++.|..-| +-.+.|.++.. .+.+||+=|+-+-.+|+||+.|.++|.|... ++..-
T Consensus 12 ~~~~~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~~vvinc~I~~~l~Ynka--tp~FH 89 (130)
T 3syx_A 12 SYARVRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLRDKMVVLECMLKKDLIYNKV--TPTFH 89 (130)
T ss_dssp EEEEEEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEEEEEEEEETTTCCEEEEEECCTTCEEEEE--ETTEE
T ss_pred eeeEEEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcEEEEEEEecCCCeEEEeeeecCCceEEec--ccccc
Confidence 57899999999999888999864 44666766532 2479999997666689999999999998764 45677
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 111 VWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 111 vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
.|. | +. ..|=|.|.+.++|..|...|..|.+.+.
T Consensus 90 qWr--d---~~---~~yGL~F~S~~dA~~F~~~~~~Al~~L~ 123 (130)
T 3syx_A 90 HWK--I---DD---KKFGLTFQSPADARAFDRGIRRAIEDIS 123 (130)
T ss_dssp EEE--E---TT---EEEEEEESSHHHHHHHHHHHHHHHHGGG
T ss_pred ccc--c---cC---eEeecccCCHHHHHHHHHHHHHHHHHHh
Confidence 777 2 21 4599999999999999999999999885
No 18
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=97.50 E-value=0.0027 Score=51.89 Aligned_cols=102 Identities=15% Similarity=0.228 Sum_probs=78.3
Q ss_pred eeEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCe--EEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEEee
Q 027635 38 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGK--VRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA 115 (221)
Q Consensus 38 e~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk--~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a~ 115 (221)
.+|...=|.||..++. +.|.-++.|.|-|.+...... .||+=.. .++++.++-|+.+|.+.... +...+|-.
T Consensus 41 ~~lataVaqLy~a~~~-~~W~~~~~Gal~~VkD~~~rsyf~RlvDl~--~~~viweqELY~~f~Y~~~r--~~FHtFe~- 114 (152)
T 1mke_A 41 VTMSSAVVQLYAADRN-CMWSKKCSGVACLVKDNPQRSYFLRIFDIK--DGKLLWEQELYNNFVYNSPR--GYFHTFAG- 114 (152)
T ss_dssp EEEEEEEEEEEEEETT-TEEEEEEEEEEEEEEETTTTEEEEEEECSS--SCSEEEEEECCSSCCCBCSS--SSEEEEEC-
T ss_pred cEEEEeeEEEEEECCC-CceEecCceEEEEEEECCCCeEEEEEEEcc--CCeEEEEeecccceeeccCC--CeEEEEec-
Confidence 4677778899999764 799999999999988865444 4888776 46899999999999986532 23333321
Q ss_pred ecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 116 DYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 116 D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
++ ..+.+.|.+.+.|..|+..+.+......
T Consensus 115 ---d~----c~~GLnFade~EA~~F~~~V~~~l~~~~ 144 (152)
T 1mke_A 115 ---DT----CQVALNFANEEEAKKFRKAVTDLLGRRQ 144 (152)
T ss_dssp ---SS----SEEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred ---CC----cEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 22 3699999999999999999998876544
No 19
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=97.46 E-value=0.0024 Score=53.02 Aligned_cols=101 Identities=15% Similarity=0.243 Sum_probs=77.6
Q ss_pred eEEEEeeeEEEEccCCCCCceeeeEEEEEEEeCCCCe--EEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEEeee
Q 027635 39 AILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGK--VRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAAD 116 (221)
Q Consensus 39 ~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk--~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a~D 116 (221)
+|...=|.||..++. +.|.-.+.|.|-|.+...... .||+=.. .++++.++-|+.+|.+... .+...+|-.
T Consensus 59 ~lataVaqLy~a~~~-~~W~~~~~Gal~~vkD~~~rsyf~RlvDl~--~~~vvweqELY~~f~Y~~~--r~~FHtFe~-- 131 (169)
T 2ifs_A 59 TMSSAVVQLYAADRN-CMWSKKCSGVACLVKDNPQRSYFLRIFDIK--DGKLLWEQELYNNFVYNSP--RGYFHTFAG-- 131 (169)
T ss_dssp EEEEEEEEEEEEETT-TEEEEEEEEEEEEEEETTTTEEEEEEEETT--TCCCCEEEECCSSCCCBCC--CSSEEEEEC--
T ss_pred EEEEEEEEEEEECCC-CeeEecCceEEEEEEECCCCeEEEEEEEcc--CCeEEEEeecccceeeccC--CCeEEEeec--
Confidence 556677899999764 799999999999988865444 4888887 4589999999999998653 223333321
Q ss_pred cCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 117 YADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 117 ~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
++ ..+.+.|.+.+.|..|+.++........
T Consensus 132 --d~----c~~GLnFade~EA~~F~~~V~~~l~~~~ 161 (169)
T 2ifs_A 132 --DT----CQVALNFANEEEAKKFRKAVTDLLGRRQ 161 (169)
T ss_dssp --SS----SEEEEECSCHHHHHHHHHHHHHHHHHCS
T ss_pred --CC----cEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 22 3699999999999999999998876654
No 20
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=95.78 E-value=0.4 Score=38.03 Aligned_cols=100 Identities=11% Similarity=0.270 Sum_probs=72.2
Q ss_pred eeEEE-EeeeEEEEccCCCCCceeee-EEEEEEEeCCCCeEEEEEE-eCCcceEEEeeeecCCCceeccCCCCceEEEEe
Q 027635 38 DAILD-LKAKLYRFDKDGNQWKERGA-GTVKLLKHKVTGKVRLVMR-QSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114 (221)
Q Consensus 38 e~lf~-~RaKLyrfdke~~~WkERGv-G~LkLlk~ketgk~RLVMR-~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a 114 (221)
++|+. ..|-||.|+...++|...|+ |+|.|.+....-+++|++= |-++..++ ..|+++|.+..+ +..++|..
T Consensus 30 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~~P~~~~ivLNR~~~~n~~--~~l~~~~~~e~~---~~~li~r~ 104 (134)
T 2lyd_A 30 EIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAEPFHSIFINNRLNTTSFV--EPITGSLELQSQ---PPFLLYRN 104 (134)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSSSSSEEEEEEETTTTEEEE--EECCSSCEEEEE---TTEEEEEE
T ss_pred HHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccCCCceEEEEEcCCCCccee--EEcCCCcEEEee---CCEEEEEC
Confidence 55555 66999999988889977665 8888877665566765444 33444444 457888888764 33566553
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027635 115 ADYADGELKDELFCIRFGSVENCKSFMEMVHEVAE 149 (221)
Q Consensus 115 ~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e 149 (221)
.+ ...|-|=|-+.+++......|+.+.+
T Consensus 105 ~~-------~~I~GiWf~~~~d~~~i~~~l~~l~~ 132 (134)
T 2lyd_A 105 ER-------SRIRGFWFYNSEECDRISGLVNGLLK 132 (134)
T ss_dssp GG-------GEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CC-------CcEEEEEecChHHHHHHHHHHHHHHh
Confidence 22 35788999999999999999998875
No 21
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=94.79 E-value=1.1 Score=35.00 Aligned_cols=76 Identities=9% Similarity=0.048 Sum_probs=50.4
Q ss_pred EEEEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHH
Q 027635 63 GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFME 142 (221)
Q Consensus 63 G~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~ 142 (221)
..|+|..+-+..-.-|.+-.+ .+..+.-.+|+++..+.... .++++++. | -..++|||.|..+++.|+.
T Consensus 32 q~v~L~~~ydpqg~sv~i~~~-~~~~l~ef~V~~~TEc~rVG--k~S~litl-g-------~~slLl~Fas~~d~~~F~~ 100 (117)
T 2oqb_A 32 QALRLEVRAGPDAAGIALYSH-EDVCVFKCSVSRETECSRVG--RQSFIITL-G-------CNSVLIQFATPHDFCSFYN 100 (117)
T ss_dssp EEEEEEEEECSSEEEEEEECT-TCCEEEEEEEETTSEEEEET--TTEEEEEE-T-------TEEEEEECSSHHHHHHHHH
T ss_pred ceEEEEEEECCCCcEEEEEcC-CCeEEEEEEecCCccceeec--CeEEEEEE-C-------CcEEEEEeCCHHHHHHHHH
Confidence 445554443333333333232 25556667788888887753 36788774 2 2579999999999999999
Q ss_pred HHHHHHH
Q 027635 143 MVHEVAE 149 (221)
Q Consensus 143 ~~ee~~e 149 (221)
.|..++.
T Consensus 101 ~l~k~~~ 107 (117)
T 2oqb_A 101 ILKTCRG 107 (117)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9999864
No 22
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=94.13 E-value=1 Score=35.36 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=64.2
Q ss_pred eeEEE-EeeeEEEEccCCCCCceeee-EEEEEEEeCCCCeEEEEE-EeCCcceEEEeeeecCCCceeccCCCCceEEEEe
Q 027635 38 DAILD-LKAKLYRFDKDGNQWKERGA-GTVKLLKHKVTGKVRLVM-RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 114 (221)
Q Consensus 38 e~lf~-~RaKLyrfdke~~~WkERGv-G~LkLlk~ketgk~RLVM-R~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a 114 (221)
++|.. ..|-||.|+..+++|...|+ |+|-|.+.. .-+++|++ =|.++..++ ..|+++|.+..+ +..+.+..
T Consensus 25 ~Il~~a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R~-~P~~~~iVlNR~~~~n~~--~~i~~~~~~e~~---~~~l~~r~ 98 (127)
T 2qkl_A 25 SIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQ-RARVGYVILNRNSPENLY--LFINHPSNVHLV---DRYLIHRT 98 (127)
T ss_dssp EEEEEEEEEEEECC------CCEEEEEEEEEEEEET-TCCEEEEEEESSSSCCEE--EEECSGGGEEEE---TTEEEEEE
T ss_pred HHhccCCeEEEEEecCCCCceEEcCcEEEEEEEEcc-CCceEEEEEcCCCCcCee--EecCCCceEEEe---CCEEEEEc
Confidence 44444 67999999988899988776 888887776 55566444 344444443 467888888864 23566654
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHH
Q 027635 115 ADYADGELKDELFCIRFGSVENCKSFMEMVHEVA 148 (221)
Q Consensus 115 ~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~ 148 (221)
.+ ...|-|=|-+.++++.....|+.+.
T Consensus 99 ~~-------~~i~GiWf~~~~d~~~i~~~l~~ll 125 (127)
T 2qkl_A 99 EN-------QHVVGLWMFDPNDMSRIFNIVKESL 125 (127)
T ss_dssp TT-------TEEEEEEESSTHHHHHHHHHHHHHT
T ss_pred CC-------CcEEEEEEEchHHHHHHHHHHHHHH
Confidence 21 3578999999999999999988764
No 23
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=93.80 E-value=0.62 Score=37.19 Aligned_cols=112 Identities=15% Similarity=0.218 Sum_probs=83.9
Q ss_pred cceeEEEEe-eeEEEEccC--C-----CCCce---eeeEEEEEEEeCCCCeEEEEEEeCCcceEEEeeee--cCCCceec
Q 027635 36 DEDAILDLK-AKLYRFDKD--G-----NQWKE---RGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLV--LPMMSVQE 102 (221)
Q Consensus 36 dEe~lf~~R-aKLyrfdke--~-----~~WkE---RGvG~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I--~~~m~l~~ 102 (221)
=|.+||..+ |-+|+.-+- + ..|.. .=+|-|||.... ..+-|.+-...+|.+-++++| +++..+.+
T Consensus 7 ~E~vL~v~~ev~VY~IPP~~s~~GyrA~dW~~~~~~wtGrlrv~~~g--~~~~I~LeD~~tGeLFA~cPv~~~~~~~VE~ 84 (133)
T 1tqz_A 7 YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKG--KIAYIKLEDKVSGELFAQAPVEQYPGIAVET 84 (133)
T ss_dssp CSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCS--SSEEEEEECSSCCSSCEEEEECSSCCCCEEE
T ss_pred eeEEEEEcCcEEEEecCCCCCCCCcccccCCCCCceeEEEEEEEEeC--CEEEEEEEeCCCCcEEEeCcccCCCCcceEE
Confidence 366777755 667776431 1 24432 458889997653 456666666778999999999 67788888
Q ss_pred cCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 103 HAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 103 ~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
...|.|.+++...| +.++...+=|-|..-.+|=.|..++++..+-++
T Consensus 85 v~DSSRYFVlRv~d---~~gr~AfiGiGF~eR~dAFDF~vaLqd~~k~~~ 131 (133)
T 1tqz_A 85 VTDSSRYFVIRIQD---GTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVK 131 (133)
T ss_dssp CTTCCSCEEEEEEE---TTTEEEEEEEECSCHHHHHHHHHHHHHHHSCSS
T ss_pred eecCcCeEEEEEEC---CCCcEEEEeeeecccccccchHHHHHHHHHHHh
Confidence 87888999988777 345778899999999999999999999876553
No 24
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=49.98 E-value=1.2e+02 Score=25.92 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 027635 124 DELFCIRFGSVENCKSFMEMVHEVAES 150 (221)
Q Consensus 124 ~e~~~IRFksaE~A~~F~~~~ee~~e~ 150 (221)
.+.|-|=|=+.++++.....|+.|.+.
T Consensus 198 ~eVyGIWih~~~Dr~~I~eLik~llen 224 (231)
T 1q67_A 198 HEVYGIWIHTVSDRQNIYELIKYLLEN 224 (231)
T ss_dssp SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CcEEEEEEccHHHHHHHHHHHHHHHhc
Confidence 567999999999999999999998865
No 25
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=44.78 E-value=93 Score=23.06 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=46.8
Q ss_pred EEEEEeCCCCeEEEEEEeCCcceEEEeeeecCCCceeccCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHH
Q 027635 65 VKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV 144 (221)
Q Consensus 65 LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~~~m~l~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ 144 (221)
+.|.-+. ..+||+ ...+..++.+|+|..=.-+.....+.+.+-|.+-|.. .....-++.+..+.+.|+.+...|
T Consensus 46 v~L~Vs~--~gi~l~--d~~~~~~~~~~~i~~Isf~~~d~~~~~~FafI~r~~~--~~~~~CHvF~c~~~~~A~~i~~~l 119 (137)
T 3so6_A 46 VTLKVSP--RGIILT--DSLTSQLIENVSIYRISYCTADKMHDKVFAYIAQSQQ--NESLECHAFLCTKRKVAQAVTLTV 119 (137)
T ss_dssp EEEEEET--TEEEEE--ETTTCCEEEEEEGGGEEEEEECSSSTTEEEEEEECSS--SSCEEEEEEECSSHHHHHHHHHHH
T ss_pred EEEEEeC--CeEEEE--ECCCCcEEEeeccCEEEEEEecCCCCCEEEEEEEcCC--CCeEEEEEEEeCCHHHHHHHHHHH
Confidence 4444442 345654 3346677888887643223333345567777776642 234567788888888887777766
Q ss_pred HHHHH
Q 027635 145 HEVAE 149 (221)
Q Consensus 145 ee~~e 149 (221)
..|-+
T Consensus 120 ~~AF~ 124 (137)
T 3so6_A 120 AQAFK 124 (137)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 26
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=32.34 E-value=1.9e+02 Score=23.05 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=27.0
Q ss_pred eeEEEEEeCCHHHHHHHHHHHHHHHHHhc
Q 027635 124 DELFCIRFGSVENCKSFMEMVHEVAESQK 152 (221)
Q Consensus 124 ~e~~~IRFksaE~A~~F~~~~ee~~e~~~ 152 (221)
++.|-+++.|+++.+.++.+|+.|++...
T Consensus 147 ~~~yel~a~s~~er~~W~~~I~~Ai~~~~ 175 (185)
T 2lg1_A 147 PEMVEVHASSKEERNSWIQIIQDTINTLN 175 (185)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHHhCC
Confidence 67899999999999999999999998875
No 27
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=31.96 E-value=56 Score=22.65 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=17.4
Q ss_pred EEEEEeCCCCeEEEEEEe-CCcce
Q 027635 65 VKLLKHKVTGKVRLVMRQ-SKTLK 87 (221)
Q Consensus 65 LkLlk~ketgk~RLVMR~-d~t~K 87 (221)
+.+..+.+||++.||-|| |+.+-
T Consensus 29 F~vF~n~etg~~nVVYRR~dG~yG 52 (65)
T 3ka5_A 29 FFVFQNGDSNEVNVVYKRKDGNYG 52 (65)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEE
T ss_pred EEEEEeCCCCCEEEEEEeCCCCEE
Confidence 567788889999999998 44433
No 28
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=30.64 E-value=56 Score=22.70 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=15.6
Q ss_pred EEEEEeCCCCeEEEEEEeC
Q 027635 65 VKLLKHKVTGKVRLVMRQS 83 (221)
Q Consensus 65 LkLlk~ketgk~RLVMR~d 83 (221)
+.+..+.+||++.||-||.
T Consensus 30 F~vF~n~etg~~nVVYRR~ 48 (66)
T 3lyv_A 30 FFIYTDSEDGATNILYRRE 48 (66)
T ss_dssp EEEEEETTTCSEEEEEECT
T ss_pred EEEEEeCCCCCEEEEEEEC
Confidence 5677888899999999984
No 29
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=29.65 E-value=59 Score=21.81 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=16.7
Q ss_pred EEEEEeCCCCeEEEEEEe-CCcc
Q 027635 65 VKLLKHKVTGKVRLVMRQ-SKTL 86 (221)
Q Consensus 65 LkLlk~ketgk~RLVMR~-d~t~ 86 (221)
+.+..+.+||+++||-|| |+.+
T Consensus 29 F~vF~n~~t~~~nVvYrR~dG~y 51 (57)
T 3k2t_A 29 FYVYTDAETNGTNIVYSRKDGKY 51 (57)
T ss_dssp EEEEEBSSSCCEEEEEECTTSCE
T ss_pred EEEEEcCCCCCEEEEEEeCCCCE
Confidence 566778889999999998 4433
No 30
>1a7g_E E2 DBD, regulatory protein E2; transcription regulation, cervical cance; 2.40A {Human papillomavirus type 31} SCOP: d.58.8.1 PDB: 1dhm_A
Probab=29.26 E-value=34 Score=24.74 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=24.7
Q ss_pred eEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHH
Q 027635 109 SCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV 144 (221)
Q Consensus 109 s~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ 144 (221)
.|.|++-+-.+ ....++|-|.|.+..+.|...+
T Consensus 35 TW~Wv~~~~~~---~~ar~lv~F~s~~QR~~FL~~V 67 (82)
T 1a7g_E 35 TWHWTCTDGKH---KNAIVTLTYISTSQRDDFLNTV 67 (82)
T ss_dssp CEECTTCCCTT---TTEEEEEECSCHHHHHHHHHHS
T ss_pred EEEeeCCCCCC---CceEEEEEECCHHHHHHHHhcC
Confidence 58887543222 3567999999999999999864
No 31
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A {Human papillomavirus type 16} SCOP: d.58.8.1 PDB: 1by9_A 1r8p_A 1zzf_A 3mi7_X
Probab=26.01 E-value=30 Score=25.75 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=22.7
Q ss_pred eEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHH
Q 027635 109 SCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV 144 (221)
Q Consensus 109 s~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ 144 (221)
.|.|++-+-.+ ....++|-|.|.+..+.|++.+
T Consensus 34 TW~Wv~~~~~~---g~armlv~F~s~~QR~~FL~tV 66 (93)
T 2q79_A 34 TWHWTGHNVKH---KSAIVTLTYDSEWQRDQFLSQV 66 (93)
T ss_dssp CBCCC---------CCEEEEEECSSHHHHHHHHHHS
T ss_pred EEEeeCCCCCC---CceEEEEEECCHHHHHHHHhcC
Confidence 57787543222 3568999999999999999865
No 32
>1r8h_A Regulatory protein E2; anti-parallel beta-barrel, DNA-binding domain, transcription, replication; 1.90A {Human papillomavirus type 6A} SCOP: d.58.8.1 PDB: 2ayb_A 2aye_A 2ayg_A
Probab=25.00 E-value=35 Score=24.97 Aligned_cols=33 Identities=18% Similarity=0.452 Sum_probs=24.6
Q ss_pred eEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHH
Q 027635 109 SCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV 144 (221)
Q Consensus 109 s~vw~a~D~adge~k~e~~~IRFksaE~A~~F~~~~ 144 (221)
.|.|++-+-.+ ....++|-|.|.+..+.|...+
T Consensus 37 TW~Wv~~~~~~---g~ar~lv~F~s~~QR~~FL~~V 69 (87)
T 1r8h_A 37 TWHWASPKAPH---KHAIVTVTYHSEEQRQQFLNVV 69 (87)
T ss_dssp CBCBCSTTCSC---CCEEEEEECSSHHHHHHHHHHC
T ss_pred EEEeeCCCCCC---CceEEEEEECCHHHHHHHHhcC
Confidence 57787433222 4568999999999999998864
No 33
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=23.96 E-value=2.5e+02 Score=21.56 Aligned_cols=31 Identities=6% Similarity=0.050 Sum_probs=26.5
Q ss_pred CceeeEEEEEeCCHHHHHHHHHHHHHHHHHh
Q 027635 121 ELKDELFCIRFGSVENCKSFMEMVHEVAESQ 151 (221)
Q Consensus 121 e~k~e~~~IRFksaE~A~~F~~~~ee~~e~~ 151 (221)
.+++.+|++.|.|-..++.+++.|+.+....
T Consensus 81 ~~~p~~~~F~FtnR~~~d~IKd~Lq~iIa~~ 111 (115)
T 1y5o_A 81 VPKPQRHMFSFNNRTVMDNIKMTLQQIISRY 111 (115)
T ss_dssp SCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 3578999999999889999999998887654
No 34
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=23.34 E-value=2.4e+02 Score=21.26 Aligned_cols=77 Identities=10% Similarity=0.194 Sum_probs=41.0
Q ss_pred EEEEEEEeCCCCeEEEEEEeCCcceEEEeeeec--CCCceeccCCCCceEEEEeeecCCCCceeeEEEEEeCCH----HH
Q 027635 63 GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVL--PMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSV----EN 136 (221)
Q Consensus 63 G~LkLlk~ketgk~RLVMR~d~t~KV~lN~~I~--~~m~l~~~~~s~ks~vw~a~D~adge~k~e~~~IRFksa----E~ 136 (221)
|+|.|... ||.=+.+......+.|.+. .++..+|- ++.|.-.-.++- + +.+|.+-|.|+ .+
T Consensus 22 GtL~l~~d------~i~W~p~~~~~~~vs~~~~~I~~qq~SP~-~k~KVqLqi~l~--~----~~~~~F~Ftn~~~a~~e 88 (108)
T 1pfj_A 22 GALYLMAE------RIAWAPEGKDRFTISHMYADIKCQKISPE-GKAKIQLQLVLH--A----GDTTNFHFSNESTAVKE 88 (108)
T ss_dssp CEEEEETT------EEEEECSSSSSCSEEEETTTCCCEEECCS-SSSSCEEEEECS--S----SCEEEEECCCSSCTTHH
T ss_pred ceEEEEcc------eEEEccCCCCCceEEEehhhhhcceeCCC-CCccEEEEEEEe--C----CCceEEEEcCcHHHHHH
Confidence 88888433 6665544433333333322 23444442 334422222221 1 25688888886 47
Q ss_pred HHHHHHHHHHHHHHhc
Q 027635 137 CKSFMEMVHEVAESQK 152 (221)
Q Consensus 137 A~~F~~~~ee~~e~~~ 152 (221)
|+.+++.+..+....+
T Consensus 89 rd~VKd~L~~~l~~~k 104 (108)
T 1pfj_A 89 RDAVKDLLQQLLPKFK 104 (108)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888887765543
Done!