BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027636
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 285 bits (730), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 133/219 (60%), Positives = 159/219 (72%)
Query: 1 MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIF 60
+ +N AGPAK QAVALRVGAD +V+ RC + YQDTLY HS RQFYR+ + GTVDFIF
Sbjct: 97 ICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIF 156
Query: 61 GNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIP 120
GNAAVV QKC + ARKP Q+N +TAQ R DPNQ TG SI C++ A+ DL+ P
Sbjct: 157 GNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFP 216
Query: 121 TYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVR 180
TYLGRPWK YSR V M +Y+G I P GW EW+GDFAL TLYYGE+MN+GPG+ RV+
Sbjct: 217 TYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVK 276
Query: 181 WPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 219
WPGY VIT +A FTV++ I G SWL STGVA++ GL
Sbjct: 277 WPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 281 bits (719), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/219 (60%), Positives = 159/219 (72%)
Query: 1 MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIF 60
+TF+N AG AKHQAVALRVG+D + YRC+++ YQD+LYVHSNRQF+ C I GTVDFIF
Sbjct: 101 ITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIF 160
Query: 61 GNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIP 120
GNAAVVLQ C I+AR+P + QKN +TAQ R DPNQNTGI I + A DLQ + S P
Sbjct: 161 GNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFP 220
Query: 121 TYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVR 180
TYLGRPWK YSR V M + + + I P GW W+G+FALDTLYYGEY N+G G+A RV
Sbjct: 221 TYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVT 280
Query: 181 WPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 219
W G++VITS+TEA FT FI G SWL +T F GL
Sbjct: 281 WKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 104/228 (45%), Gaps = 46/228 (20%)
Query: 13 QAVALRV--GADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKC 70
QAVAL V D A +++GYQDTLYV R F+ +C I GTVDFIFG+ + C
Sbjct: 129 QAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNC 188
Query: 71 AIYARKPMAMQKNTITA---QNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTY---LG 124
+ +R ++ ++ + NQ G+ I + + D S+P LG
Sbjct: 189 DLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESD------SVPAKSYGLG 242
Query: 125 RPW--------------KLYSRVVYMLTYMGDHIQPRGWLEWNG-DFALDTLYYG----- 164
RPW + V++ T M +HI GW + +G D +T+++
Sbjct: 243 RPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSR 300
Query: 165 --EYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPS 210
EY + G G+AV R +T A +A+++T S+ + W P+
Sbjct: 301 FFEYKSYGAGAAVSK-----DRRQLTDA-QAAEYTQSKVL--GDWTPT 340
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 46/228 (20%)
Query: 13 QAVALRV--GADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKC 70
QAVAL V D A +++GYQDTLYV R F+ +C I GTVDFIFG+ + C
Sbjct: 129 QAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNC 188
Query: 71 AIYARKPMAMQKNTITA---QNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTY---LG 124
+ +R ++ ++ + NQ G+ I + + D S+P LG
Sbjct: 189 DLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESD------SVPAKSYGLG 242
Query: 125 RPW--------------KLYSRVVYMLTYMGDHIQPRGWLEWNG-DFALDTLYYG----- 164
RPW + V++ T M +HI GW + +G D +T+++
Sbjct: 243 RPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSR 300
Query: 165 --EYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPS 210
EY + G G+ V R +T A +A+++T S+ + W P+
Sbjct: 301 FFEYKSYGAGATVSK-----DRRQLTDA-QAAEYTQSKVL--GDWTPT 340
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 46/228 (20%)
Query: 13 QAVALRV--GADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKC 70
QAVAL V D A +++GYQ TLYV R F+ +C I GTVDFIFG+ + C
Sbjct: 129 QAVALYVTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNC 188
Query: 71 AIYARKPMAMQKNTITA---QNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTY---LG 124
+ +R ++ ++ + NQ G+ I + + D S+P LG
Sbjct: 189 DLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESD------SVPAKSYGLG 242
Query: 125 RPW--------------KLYSRVVYMLTYMGDHIQPRGWLEWNG-DFALDTLYYG----- 164
RPW + V++ T M +HI GW + +G D +T+++
Sbjct: 243 RPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSR 300
Query: 165 --EYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPS 210
EY + G G+ V R +T A +A+++T S+ + W P+
Sbjct: 301 FFEYKSYGAGATVSK-----DRRQLTDA-QAAEYTQSKVL--GDWTPT 340
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 13 QAVALRVG--ADHAVVYRCNVIGYQDTLYVHS-NRQFYRECDIYGTVDFIFGNAAVVLQK 69
QAVAL + +D A + GYQDTLY + +R ++ +C+I G VDFIFG+ V
Sbjct: 155 QAVALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDN 214
Query: 70 CAIYARKPMAMQK--NTITAQNRKDPNQNT----GISIHDCSLYAAPDLQASKGSIPTYL 123
C I AR ++ ITA P+ T G+ + L P + A+ + L
Sbjct: 215 CNIVARDRSDIEPPYGYITA-----PSTLTTSPYGLIFINSRLTKEPGVPANSFA----L 265
Query: 124 GRPWKLYS--------------RVVYMLTYMGDHIQPRGWLEWNGD---------FALDT 160
GRPW + + V++ T M DHI GW + +G + D+
Sbjct: 266 GRPWHPTTTFADGRYADPAAIGQSVFINTTMDDHIY--GWDKMSGKDKQGEKIWFYPQDS 323
Query: 161 LYYGEYMNSGPGSAVGHRVR 180
++ E + GPG+A+ R
Sbjct: 324 RFF-EANSQGPGAAINEGRR 342
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc
Length = 422
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 1 MTFENFAGPA----KHQAVALRVGADHAVVYRCNVIGYQDTLYV---------HSNRQ-- 45
+T EN G + H AVALR D + N++G Q+T +V +NRQ
Sbjct: 208 LTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPR 267
Query: 46 -FYRECDIYGTVDFIFGNAAVVLQKC 70
I G VD + G AVV
Sbjct: 268 TLVTNSYIEGDVDIVSGRGAVVFDNT 293
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
Length = 233
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Query: 93 PNQNTGISIHD----CSLYAAPDLQASKGSIPTYLGRPWKLY 130
P+ TGIS HD C + AAPD Q P++ RP ++
Sbjct: 103 PSTTTGISAHDRALACRMLAAPDAQ------PSHFRRPGHVF 138
>pdb|3CVA|X Chain X, Human Bcl-Xl Containing A Trp To Ala Mutation At Position
137
Length = 219
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 162 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 196
>pdb|4HNJ|A Chain A, Crystallographic Structure Of Bcl-xl Domain-swapped Dimer
In Complex With Puma Bh3 Peptide At 2.9a Resolution
pdb|4HNJ|B Chain B, Crystallographic Structure Of Bcl-xl Domain-swapped Dimer
In Complex With Puma Bh3 Peptide At 2.9a Resolution
Length = 212
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 165 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 199
>pdb|1R2D|A Chain A, Structure Of Human Bcl-Xl At 1.95 Angstroms
pdb|2B48|A Chain A, Bcl-Xl 3d Domain Swapped Dimer
Length = 218
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 162 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 196
>pdb|1R2I|A Chain A, Human Bcl-Xl Containing A Phe To Leu Mutation At Position
146
Length = 218
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 162 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 196
>pdb|1LXL|A Chain A, Nmr Structure Of Bcl-Xl, An Inhibitor Of Programmed Cell
Death, Minimized Average Structure
pdb|1MAZ|A Chain A, X-Ray Structure Of Bcl-Xl, An Inhibitor Of Programmed Cell
D
pdb|1BXL|A Chain A, Structure Of Bcl-XlBAK PEPTIDE COMPLEX, NMR, MINIMIZED
Average Structure
Length = 221
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 166 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 200
>pdb|1R2G|A Chain A, Human Bcl-Xl Containing A Phe To Trp Mutation At Position
97
Length = 218
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 162 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 196
>pdb|1R2E|A Chain A, Human Bcl-Xl Containing A Glu To Leu Mutation At Position
92
Length = 218
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 162 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 196
>pdb|1R2H|A Chain A, Human Bcl-Xl Containing An Ala To Leu Mutation At Position
142
Length = 218
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 162 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 196
>pdb|1ZGH|A Chain A, Methionyl-Trna Formyltransferase From Clostridium
Thermocellum
Length = 260
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 46 FYRECDIYGTVDFIFGNAAVVLQKCAI---YARKPMAM-QKNTITAQNRKDPNQN 96
F R+ D+YGT + IF A+ ++ I ++P+ Q+ T R+ P Q+
Sbjct: 146 FKRDLDLYGTAEEIFXRASKIIFNDXIPELLTKRPVPQKQEGEATVFQRRKPEQS 200
>pdb|3SP7|A Chain A, Crystal Structure Of Bcl-Xl Bound To Bm903
Length = 172
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 125 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 159
>pdb|4EHR|A Chain A, Crystal Structure Of Bcl-Xl Complex With
4-(5-Butyl-3-(Hydroxymethyl)-
1-Phenyl-1h-Pyrazol-4-Yl)-3-(3,4-Dihydro-2(1h)-
Isoquinolinylcarbonyl)-N-((2-
(Trimethylsilyl)ethyl)sulfonyl)benzamide
Length = 172
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 125 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 159
>pdb|2M04|A Chain A, Solution Structure Of Bcl-xl In Complex With Puma Bh3
Peptide
Length = 180
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 125 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 159
>pdb|2LPC|A Chain A, Nmr Structure Of Bcl-Xl
pdb|2LP8|A Chain A, Solution Structure Of An Apoptosis Activating
Photoswitchable Bak Peptide Bound To Bcl-Xl
Length = 185
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 122 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 156
>pdb|1G5J|A Chain A, Complex Of Bcl-Xl With Peptide From Bad
Length = 175
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 126 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 160
>pdb|1YSG|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl In
Complex With "sar By Nmr" Ligands
pdb|1YSI|A Chain A, Solution Structure Of The Anti-apoptotic Protein Bcl-xl In
Complex With An Acyl-sulfonamide-based Ligand
pdb|1YSN|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl
Complexed With An Acyl-Sulfonamide-Based Ligand
pdb|2O1Y|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl In
Complex With An Acyl-Sulfonamide-Based Ligand
pdb|2YXJ|A Chain A, Crystal Structure Of Bcl-Xl In Complex With Abt-737
pdb|2YXJ|B Chain B, Crystal Structure Of Bcl-Xl In Complex With Abt-737
pdb|3PL7|A Chain A, Crystal Structure Of Bcl-Xl In Complex With The Baxbh3
Domain
pdb|3PL7|B Chain B, Crystal Structure Of Bcl-Xl In Complex With The Baxbh3
Domain
pdb|3QKD|A Chain A, Crystal Structure Of Bcl-Xl In Complex With A Quinazoline
Sulfonamide Inhibitor
pdb|3QKD|B Chain B, Crystal Structure Of Bcl-Xl In Complex With A Quinazoline
Sulfonamide Inhibitor
pdb|2M03|A Chain A, Solution Structure Of Bcl-xl Determined With Selective
Isotope Labelling Of I,l,v Sidechains
Length = 181
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 126 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 160
>pdb|3SPF|A Chain A, Crystal Structure Of Bcl-Xl Bound To Bm501
Length = 171
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 125 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 159
>pdb|3R85|A Chain A, Crystal Structure Of Human Soul Bh3 Domain In Complex With
Bcl-Xl
pdb|3R85|B Chain B, Crystal Structure Of Human Soul Bh3 Domain In Complex With
Bcl-Xl
pdb|3R85|C Chain C, Crystal Structure Of Human Soul Bh3 Domain In Complex With
Bcl-Xl
pdb|3R85|D Chain D, Crystal Structure Of Human Soul Bh3 Domain In Complex With
Bcl-Xl
Length = 156
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 109 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 143
>pdb|3FDL|A Chain A, Bim Bh3 Peptide In Complex With Bcl-Xl
pdb|3FDM|A Chain A, AlphaBETA FOLDAMER IN COMPLEX WITH BCL-Xl
pdb|3FDM|B Chain B, AlphaBETA FOLDAMER IN COMPLEX WITH BCL-Xl
pdb|3FDM|C Chain C, AlphaBETA FOLDAMER IN COMPLEX WITH BCL-Xl
pdb|3INQ|A Chain A, Crystal Structure Of Bcl-Xl In Complex With W1191542
pdb|3INQ|B Chain B, Crystal Structure Of Bcl-Xl In Complex With W1191542
pdb|3IO8|A Chain A, Biml12f In Complex With Bcl-Xl
pdb|3IO8|C Chain C, Biml12f In Complex With Bcl-Xl
pdb|2YJ1|A Chain A, Puma Bh3 Foldamer In Complex With Bcl-Xl
pdb|2YJ1|C Chain C, Puma Bh3 Foldamer In Complex With Bcl-Xl
pdb|4A1U|A Chain A, Crystal Structure Of Alpha-Beta-Foldamer 2c In Complex
With Bcl-Xl
pdb|4A1W|A Chain A, Crystal Structure Of Alpha-Beta Foldamer 4c In Complex
With Bcl-Xl
pdb|4A1W|B Chain B, Crystal Structure Of Alpha-Beta Foldamer 4c In Complex
With Bcl-Xl
pdb|4A1W|C Chain C, Crystal Structure Of Alpha-Beta Foldamer 4c In Complex
With Bcl-Xl
pdb|4A1W|D Chain D, Crystal Structure Of Alpha-Beta Foldamer 4c In Complex
With Bcl-Xl
pdb|2YQ6|A Chain A, Structure Of Bcl-xl Bound To Bimsahb
pdb|2YQ7|A Chain A, Structure Of Bcl-xl Bound To Bimlock
Length = 158
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 111 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 145
>pdb|2BZW|A Chain A, The Crystal Structure Of Bcl-Xl In Complex With
Full-Length Bad
Length = 211
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNG 154
L SR+ +M TY+ DH++P W++ NG
Sbjct: 162 LVSRIASWMATYLNDHLEP--WIQENG 186
>pdb|2P1L|A Chain A, Structure Of The Bcl-Xl:beclin 1 Complex
pdb|2P1L|C Chain C, Structure Of The Bcl-Xl:beclin 1 Complex
pdb|2P1L|E Chain E, Structure Of The Bcl-Xl:beclin 1 Complex
pdb|2P1L|G Chain G, Structure Of The Bcl-Xl:beclin 1 Complex
Length = 153
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 106 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 140
>pdb|2PON|B Chain B, Solution Structure Of The Bcl-XlBECLIN-1 Complex
Length = 156
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 122 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 156
>pdb|3IHD|A Chain A, Crystal Structure Of Mouse Bcl-Xl Mutant (Y101a) At Ph 5.0
pdb|3ILC|A Chain A, Crystal Structure Of Mouse Bcl-Xl Mutant (Y101a) At Ph 6.0
Length = 197
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNG 154
L SR+ +M TY+ DH++P W++ NG
Sbjct: 163 LVSRIASWMATYLNDHLEP--WIQENG 187
>pdb|3IHE|A Chain A, Crystal Structure Of Mouse Bcl-Xl Mutant (F105a) At Ph 6.0
pdb|3IIG|A Chain A, Crystal Structure Of Mouse Bcl-Xl Mutant (F105a) At Ph 5.0
Length = 196
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNG 154
L SR+ +M TY+ DH++P W++ NG
Sbjct: 162 LVSRIASWMATYLNDHLEP--WIQENG 186
>pdb|3IHF|A Chain A, Crystal Structure Of Mouse Bcl-Xl Mutant (R139a) At Ph 5.0
pdb|3IHF|B Chain B, Crystal Structure Of Mouse Bcl-Xl Mutant (R139a) At Ph 5.0
pdb|3IHF|C Chain C, Crystal Structure Of Mouse Bcl-Xl Mutant (R139a) At Ph 5.0
pdb|3IHF|D Chain D, Crystal Structure Of Mouse Bcl-Xl Mutant (R139a) At Ph 5.0
pdb|3ILB|A Chain A, Crystal Structure Of Mouse Bcl-Xl Mutant (R139a) At Ph 6.0
pdb|3ILB|N Chain N, Crystal Structure Of Mouse Bcl-Xl Mutant (R139a) At Ph 6.0
Length = 196
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNG 154
L SR+ +M TY+ DH++P W++ NG
Sbjct: 162 LVSRIASWMATYLNDHLEP--WIQENG 186
>pdb|1PQ0|A Chain A, Crystal Structure Of Mouse Bcl-Xl
pdb|1PQ1|A Chain A, Crystal Structure Of Bcl-XlBIM
pdb|3IHC|A Chain A, Crystal Structure Of Mouse Bcl-Xl (Wt) At Ph 5.0
pdb|3IIH|A Chain A, Crystal Structure Of Mouse Bcl-Xl (Wt) At Ph 6.0
Length = 196
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNG 154
L SR+ +M TY+ DH++P W++ NG
Sbjct: 162 LVSRIASWMATYLNDHLEP--WIQENG 186
>pdb|1AF3|A Chain A, Rat Bcl-Xl An Apoptosis Inhibitory Protein
Length = 196
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNG 154
L SR+ +M TY+ DH++P W++ NG
Sbjct: 162 LVSRIASWMATYLNDHLEP--WIQENG 186
>pdb|2O2M|A Chain A, Solution Structure Of The Anti-apoptotic Protein Bcl-xl In
Complex With An Acyl-sulfonamide-based Ligand
pdb|2O2N|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl In
Complex With An Acyl-Sulfonamide-Based Ligand
Length = 145
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 129 LYSRVV-YMLTYMGDHIQPRGWLEWNGDFALDTLYYG 164
L SR+ +M TY+ DH++P W++ NG + YG
Sbjct: 111 LVSRIAAWMATYLNDHLEP--WIQENGGWDTFVELYG 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,065,205
Number of Sequences: 62578
Number of extensions: 289721
Number of successful extensions: 479
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 37
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)