Query 027637
Match_columns 221
No_of_seqs 124 out of 220
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 12:56:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02592 ent-copalyl diphospha 100.0 1.3E-59 2.9E-64 468.2 18.1 210 12-221 18-230 (800)
2 PLN02279 ent-kaur-16-ene synth 100.0 2.4E-52 5.3E-57 416.2 15.9 156 62-221 32-189 (784)
3 PF13243 Prenyltrans_1: Prenyl 98.4 9.2E-07 2E-11 66.9 6.9 80 84-167 22-105 (109)
4 PF13243 Prenyltrans_1: Prenyl 98.3 2.3E-07 4.9E-12 70.2 0.5 55 110-168 3-59 (109)
5 TIGR03463 osq_cycl 2,3-oxidosq 97.9 3.7E-05 7.9E-10 76.6 9.1 83 85-167 502-595 (634)
6 PF13249 Prenyltrans_2: Prenyl 97.9 1.4E-05 3.1E-10 60.1 4.5 54 112-169 1-56 (113)
7 PF13249 Prenyltrans_2: Prenyl 97.8 1.6E-05 3.5E-10 59.9 3.3 81 85-167 20-104 (113)
8 cd02897 A2M_2 Proteins similar 97.6 0.00027 5.9E-09 62.8 8.5 86 85-170 77-175 (292)
9 TIGR01507 hopene_cyclase squal 97.6 0.00014 3.1E-09 72.5 6.6 83 86-169 497-591 (635)
10 TIGR01787 squalene_cyclas squa 97.5 0.00048 1E-08 68.6 8.7 82 85-167 485-579 (621)
11 cd02889 SQCY Squalene cyclase 97.4 0.0006 1.3E-08 61.0 8.3 82 86-167 217-309 (348)
12 cd02896 complement_C3_C4_C5 Pr 97.4 0.00057 1.2E-08 61.4 7.5 89 82-170 75-185 (297)
13 cd02892 SQCY_1 Squalene cyclas 97.4 0.00073 1.6E-08 67.0 8.8 83 85-167 501-595 (634)
14 cd00688 ISOPREN_C2_like This g 97.4 0.00064 1.4E-08 56.8 7.1 85 85-169 79-174 (300)
15 cd02889 SQCY Squalene cyclase 97.3 0.00047 1E-08 61.7 5.9 54 110-168 3-59 (348)
16 PLN03012 Camelliol C synthase 97.2 0.0011 2.4E-08 67.8 8.2 85 85-169 615-716 (759)
17 PLN02993 lupeol synthase 97.2 0.0015 3.2E-08 66.9 8.4 82 85-166 615-712 (763)
18 cd02891 A2M_like Proteins simi 97.0 0.0031 6.8E-08 54.7 7.9 86 85-170 76-173 (282)
19 PLN03012 Camelliol C synthase 96.9 0.0015 3.2E-08 66.8 6.1 55 109-166 593-650 (759)
20 PF00432 Prenyltrans: Prenyltr 96.6 0.003 6.5E-08 41.8 3.7 38 109-148 4-41 (44)
21 PLN02993 lupeol synthase 96.6 0.0038 8.3E-08 63.9 6.2 56 109-167 593-651 (763)
22 PF07678 A2M_comp: A-macroglob 96.5 0.0041 8.9E-08 54.6 5.2 90 82-171 21-129 (246)
23 TIGR01507 hopene_cyclase squal 96.5 0.0047 1E-07 61.8 5.7 75 89-167 452-531 (635)
24 cd00688 ISOPREN_C2_like This g 96.2 0.0086 1.9E-07 50.0 5.3 82 85-166 184-269 (300)
25 TIGR01787 squalene_cyclas squa 96.1 0.013 2.7E-07 58.6 6.4 60 106-168 460-522 (621)
26 TIGR03463 osq_cycl 2,3-oxidosq 96.0 0.018 3.9E-07 57.7 7.1 103 63-166 276-411 (634)
27 cd02892 SQCY_1 Squalene cyclas 95.6 0.035 7.7E-07 55.2 7.2 102 63-167 278-412 (634)
28 cd02890 PTase Protein prenyltr 95.5 0.063 1.4E-06 47.4 7.9 62 105-168 145-207 (286)
29 cd02890 PTase Protein prenyltr 94.8 0.23 5E-06 43.8 9.3 104 62-167 46-158 (286)
30 cd02891 A2M_like Proteins simi 94.2 0.13 2.8E-06 44.6 6.2 58 110-168 53-114 (282)
31 cd02894 GGTase-II Geranylgeran 93.6 0.26 5.6E-06 44.2 7.2 59 107-167 149-208 (287)
32 TIGR02474 pec_lyase pectate ly 93.3 0.11 2.5E-06 47.8 4.5 21 108-128 69-89 (290)
33 cd02897 A2M_2 Proteins similar 91.8 0.17 3.6E-06 45.0 3.4 56 85-149 235-291 (292)
34 PLN03201 RAB geranylgeranyl tr 91.0 0.57 1.2E-05 43.0 6.1 58 108-167 58-116 (316)
35 cd02894 GGTase-II Geranylgeran 87.1 1.6 3.5E-05 39.0 6.0 58 108-167 102-160 (287)
36 cd02896 complement_C3_C4_C5 Pr 87.0 1.8 3.8E-05 39.0 6.2 81 86-169 187-276 (297)
37 PLN03201 RAB geranylgeranyl tr 86.4 2.3 4.9E-05 39.1 6.7 56 109-167 107-164 (316)
38 cd02893 FTase Protein farnesyl 83.7 3.1 6.8E-05 37.8 6.2 56 109-166 50-109 (299)
39 KOG0497 Oxidosqualene-lanoster 83.0 1.9 4E-05 44.5 4.8 51 110-166 593-649 (760)
40 KOG0497 Oxidosqualene-lanoster 81.5 2.3 5.1E-05 43.8 4.9 60 106-165 638-710 (760)
41 cd02895 GGTase-I Geranylgerany 79.8 4.5 9.7E-05 37.0 5.8 60 106-167 165-228 (307)
42 PLN02710 farnesyltranstransfer 77.0 5.9 0.00013 38.6 6.0 57 109-167 95-155 (439)
43 KOG0366 Protein geranylgeranyl 75.6 6.9 0.00015 36.5 5.7 58 109-168 69-127 (329)
44 cd02893 FTase Protein farnesyl 72.9 11 0.00023 34.3 6.3 58 108-167 100-158 (299)
45 PLN02592 ent-copalyl diphospha 66.3 14 0.00031 38.6 6.3 84 112-213 253-342 (800)
46 cd02895 GGTase-I Geranylgerany 60.6 28 0.0006 31.8 6.5 59 109-167 52-124 (307)
47 PF07678 A2M_comp: A-macroglob 58.8 8.7 0.00019 33.7 2.7 34 108-150 211-244 (246)
48 PLN02279 ent-kaur-16-ene synth 57.4 29 0.00063 36.3 6.6 80 115-212 218-301 (784)
49 PF05589 DUF768: Protein of un 56.2 9.8 0.00021 27.8 2.2 43 158-200 3-45 (64)
50 PF01122 Cobalamin_bind: Eukar 53.1 16 0.00036 34.3 3.7 69 110-191 219-291 (326)
51 PF09282 Mago-bind: Mago bindi 46.3 2.9 6.3E-05 25.9 -1.6 14 115-128 5-18 (27)
52 KOG0366 Protein geranylgeranyl 42.4 52 0.0011 30.9 5.1 56 110-167 118-174 (329)
53 KOG0365 Beta subunit of farnes 41.2 37 0.00079 32.9 4.1 40 110-151 124-163 (423)
54 PF09492 Pec_lyase: Pectic aci 40.6 16 0.00035 33.8 1.6 21 108-128 64-84 (289)
55 COG1657 SqhC Squalene cyclase 38.2 28 0.00061 34.8 2.9 24 105-128 122-150 (517)
56 cd00684 Terpene_cyclase_plant_ 36.9 2.4E+02 0.0052 27.9 9.1 134 36-172 3-173 (542)
57 COG1689 Uncharacterized protei 33.7 59 0.0013 29.8 4.0 59 110-170 10-68 (274)
58 COG5029 CAL1 Prenyltransferase 28.8 1.3E+02 0.0028 28.7 5.5 65 101-169 169-238 (342)
59 PLN02710 farnesyltranstransfer 27.6 1.5E+02 0.0032 29.1 5.9 58 108-166 145-202 (439)
60 PF02467 Whib: Transcription f 26.1 35 0.00076 24.6 1.0 24 105-128 35-58 (66)
61 COG1657 SqhC Squalene cyclase 25.1 36 0.00077 34.1 1.2 54 110-166 356-412 (517)
62 COG1324 CutA Uncharacterized p 24.2 58 0.0013 26.0 2.0 62 41-118 41-102 (104)
63 KOG1366 Alpha-macroglobulin [P 20.7 63 0.0014 36.2 2.1 90 81-171 993-1094(1436)
64 KOG4793 Three prime repair exo 20.3 1.5E+02 0.0032 28.0 4.1 62 144-209 93-155 (318)
No 1
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1.3e-59 Score=468.21 Aligned_cols=210 Identities=57% Similarity=0.858 Sum_probs=188.1
Q ss_pred cCCCccccccccccc--chhcccceeccccccc-cccccccccchhhhhhhhhhhhHHHHHHHHHHHhccCCCCCcccch
Q 027637 12 VTPESSLSCNYHSTQ--IVYISRVVDRLVLKVR-KCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSA 88 (221)
Q Consensus 12 ~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~~~~~G~iS~Sa 88 (221)
++.+.+.+|++++++ ++|.+..+.+.+.|++ +|++.++++...+....+.++.++.++++||+||.++++|++|||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~~~g~~S~S~ 97 (800)
T PLN02592 18 RNGNIHCRCSAISKPRTQEYADVFEVQNGLPLINKWHEIVEDDIEEEASKGSVSNEIKERVKTVKSMLSSMEDGEISISA 97 (800)
T ss_pred ccCceecccccccCCcccccccchhcccCCcccccHHhhcccccchhhccccchhhHHHHHHHHHHHHhcccCCCcCCcH
Confidence 445667899999887 8999998644467775 5555555554333344667888999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhhh
Q 027637 89 YDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNL 168 (221)
Q Consensus 89 YDTAWVAmVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl 168 (221)
||||||||||+++|+.+|+||+||+|||+||++|||||++..++.+|||+|||||||||++|++++++|+||++||++|+
T Consensus 98 YDTAWVAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~rGl~fi~~nl 177 (800)
T PLN02592 98 YDTAWVALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPEKCEKGMSFFRENI 177 (800)
T ss_pred HHhHHHhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876678999999999999999999999999999999999999
Q ss_pred hhhhccccccCcceeeeehHHHHHHHHHCCCccCCChHHHHHHHHHHHhhhcC
Q 027637 169 SKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR 221 (221)
Q Consensus 169 ~~~~~e~~~~~pvGFEIifPaLL~~a~~lgl~~p~~~~~l~~i~~~R~~KL~r 221 (221)
++|.+++.+++|||||||||+||++|+++||+||++++.|++|+++|+.||+|
T Consensus 178 ~~~~~~~~~~~pvGFeIifP~LLe~a~~lgL~~p~~~~~l~~i~~~r~~kL~r 230 (800)
T PLN02592 178 CKLEDENAEHMPIGFEVAFPSLLEIAKNLDIEVPYDSPVLKEIYAQRNLKLTR 230 (800)
T ss_pred HHhhcCCCCCCCceEEeeHHHHHHHHHHcCCCCCCCcHHHHHHHHhhHHHHhh
Confidence 99987777899999999999999999999999999999999999999999986
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=2.4e-52 Score=416.19 Aligned_cols=156 Identities=37% Similarity=0.737 Sum_probs=146.2
Q ss_pred hhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhcccCCCCCCCCCchhHHHHHHHhcCCCCCCCCC--CcCcchhHHhh
Q 027637 62 SNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDD--KIFLAHDRLIN 139 (221)
Q Consensus 62 ~~~~~~lv~~ik~ll~~~~~G~iS~SaYDTAWVAmVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~--~~~~~~D~ll~ 139 (221)
+..+++++++||+||+++ ++|||+||||||||||+++++++||||+||+||++||++|||||.+ ..+..+|+|+|
T Consensus 32 ~~~~~~~~~~i~~~l~~~---e~s~s~YDTAWvamv~~~~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~ 108 (784)
T PLN02279 32 NVSFEGTKERIKKMFDKV---ELSVSSYDTAWVAMVPSPNSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSS 108 (784)
T ss_pred cccchhHHHHHHHHhccC---cCCCchhhhHHHHhcccCCCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHH
Confidence 345688999999999998 8999999999999999999889999999999999999999999954 45678999999
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhhhhhhhccccccCcceeeeehHHHHHHHHHCCCccCCChHHHHHHHHHHHhhh
Q 027637 140 TLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKL 219 (221)
Q Consensus 140 TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~~~~e~~~~~pvGFEIifPaLL~~a~~lgl~~p~~~~~l~~i~~~R~~KL 219 (221)
||||||||++|++++++|+||+.||++|++.+.+ +.+++|||||||||+||++|+++||+||++++.|++|+++|+.||
T Consensus 109 TlAcvlAL~~w~~~~~~~~~gl~fi~~n~~~~~d-~~~~~pvGfei~fP~ll~~a~~~gl~~~~~~~~l~~~~~~r~~~l 187 (784)
T PLN02279 109 TLASILALKKWGVGEEQINKGLQFIELNSASVTD-EKQHKPIGFDIIFPGMIEYAKDLDLNLPLGSEVVDAMLHKRDLDL 187 (784)
T ss_pred HHHHHHHHHHHhcCcccchhhHHHHHHHHHhhcc-cccCCCceEEEehHHHHHHHHHcCCCCCCChHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999998764 468999999999999999999999999999999999999999999
Q ss_pred cC
Q 027637 220 KR 221 (221)
Q Consensus 220 ~r 221 (221)
+|
T Consensus 188 ~~ 189 (784)
T PLN02279 188 KS 189 (784)
T ss_pred hh
Confidence 75
No 3
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.41 E-value=9.2e-07 Score=66.87 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=37.5
Q ss_pred cccchhhhhhhhcccCC--CCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHH--HHHHHhhcCChHHHHH
Q 027637 84 ISTSAYDTAWVALIKDI--DGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLAC--IVALKSWNIHLDKCEK 159 (221)
Q Consensus 84 iS~SaYDTAWVAmVp~~--~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAc--vlAL~~w~~~~~~i~k 159 (221)
.....+-|+|++++-.. +....+..-.+++||+++|.+||+|+... .+....|.++ ++++..+......++|
T Consensus 22 ~~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~----~~~~~~t~~~~~~l~~~~~~~~~~~~~r 97 (109)
T PF13243_consen 22 WGSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSG----GEYVSMTAAAIAALALAGVYPDDEAVER 97 (109)
T ss_dssp -------------------TS-SSBSSHHHHHHHHH---TTS--S-TS------HHHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred ccccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcC----CCCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 33567889996665443 33456788999999999999999999653 2223344444 4444445556678999
Q ss_pred HHHHHHhh
Q 027637 160 GISFVKGN 167 (221)
Q Consensus 160 Gl~fL~~n 167 (221)
|++||.++
T Consensus 98 ~~~wi~~~ 105 (109)
T PF13243_consen 98 GLEWILSH 105 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999886
No 4
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.25 E-value=2.3e-07 Score=70.22 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=12.0
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC--hHHHHHHHHHHHhhh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH--LDKCEKGISFVKGNL 168 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~--~~~i~kGl~fL~~nl 168 (221)
++++||+++|++||||+... .+....|.+++.+|...+.. ..+|.||+.||.++-
T Consensus 3 ~~~~~l~~~Q~~dG~W~~~~----~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q 59 (109)
T PF13243_consen 3 RAAEWLLSQQNPDGSWGYNW----GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQ 59 (109)
T ss_dssp ------------------------------------------TS-SSBSSHHHHHHHHH--
T ss_pred cccccccccccccccccccc----cccccccccccccccccCCCCcHHHHHHHHHHHHHhc
Confidence 57899999999999998652 25589999999999998743 347999999999853
No 5
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=97.94 E-value=3.7e-05 Score=76.60 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=58.6
Q ss_pred ccchhhhhhhh--cccCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcC--------cchhHHhhhHHHHHHHHhhc-CC
Q 027637 85 STSAYDTAWVA--LIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIF--------LAHDRLINTLACIVALKSWN-IH 153 (221)
Q Consensus 85 S~SaYDTAWVA--mVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~--------~~~D~ll~TLAcvlAL~~w~-~~ 153 (221)
.+-.|-|+|+. |.-.-.....+....+++||++.|++|||||+.-.. ...-....|..||+||..-+ .+
T Consensus 502 ~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~ 581 (634)
T TIGR03463 502 VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGG 581 (634)
T ss_pred CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcC
Confidence 35689999944 432111123466788999999999999999863110 01234789999999999865 33
Q ss_pred hHHHHHHHHHHHhh
Q 027637 154 LDKCEKGISFVKGN 167 (221)
Q Consensus 154 ~~~i~kGl~fL~~n 167 (221)
...|+||+.||.++
T Consensus 582 ~~~i~rgi~~L~~~ 595 (634)
T TIGR03463 582 HDAVQRGVAWLRSR 595 (634)
T ss_pred CHHHHHHHHHHHHh
Confidence 45799999999974
No 6
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=97.91 E-value=1.4e-05 Score=60.11 Aligned_cols=54 Identities=19% Similarity=0.451 Sum_probs=41.4
Q ss_pred HHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHH--HHHHHhhhh
Q 027637 112 LQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKG--ISFVKGNLS 169 (221)
Q Consensus 112 v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kG--l~fL~~nl~ 169 (221)
|+||+..|++||+|+... ..-.+..|..|+.||......+ .++++ ++||.++..
T Consensus 1 v~~L~~~Q~~dGgw~~~~---~~~~~~~T~~al~aL~~~g~~~-~~~~~~~~~~L~~~q~ 56 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFG---GPSDVWDTAFALLALAALGEEP-DRDRAAAVEWLLSQQN 56 (113)
T ss_dssp HHHHHHHB-TTSSBBSST---S-BEHHHHHHHHHHHHHHTSHH-CHHHHHHHHHHHHHB-
T ss_pred CHhhHHHcCCCCCCcCCC---CCCCHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHhCC
Confidence 799999999999999731 2446889999999999977654 36666 999998654
No 7
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=97.82 E-value=1.6e-05 Score=59.85 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=50.7
Q ss_pred ccchhhhhhhhcccCCCCCCCCCchhH--HHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCCh--HHHHHH
Q 027637 85 STSAYDTAWVALIKDIDGNDAPQFPSC--LQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHL--DKCEKG 160 (221)
Q Consensus 85 S~SaYDTAWVAmVp~~~g~~~p~FP~~--v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~--~~i~kG 160 (221)
.+.+++|+++.+.=..-+... .-.++ ++||++.|.+||+|+.... ...-.+-.|..|+.+|..-+... ..++|+
T Consensus 20 ~~~~~~T~~al~aL~~~g~~~-~~~~~~~~~~L~~~q~~dGg~~~~~~-~~~~~~~~t~~~l~~l~~~~~~~~~~~~~~a 97 (113)
T PF13249_consen 20 PSDVWDTAFALLALAALGEEP-DRDRAAAVEWLLSQQNPDGGWGSNPD-GGPPDVYTTYVALAALELLGRPDDEEAVRKA 97 (113)
T ss_dssp -BEHHHHHHHHHHHHHHTSHH-CHHHHHHHHHHHHHB-TTSGBBSSTT-TT-BSHHHHHHHHHHHHHHT-GGCHTTHCCH
T ss_pred CCCHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHhCCCCCCccCCCC-CCCccHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 468999999544312112111 14466 9999999999999996531 11122555777777776544443 479999
Q ss_pred HHHHHhh
Q 027637 161 ISFVKGN 167 (221)
Q Consensus 161 l~fL~~n 167 (221)
+.||.++
T Consensus 98 ~~~l~~~ 104 (113)
T PF13249_consen 98 VDWLLSC 104 (113)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999874
No 8
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=97.62 E-value=0.00027 Score=62.80 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=60.0
Q ss_pred ccchhhhhhhhcccC--CC--CCCCCCchhHHHHHHHhcCCCCCCCCCCcCc-------chhHHhhhHHHHHHHHhhcCC
Q 027637 85 STSAYDTAWVALIKD--ID--GNDAPQFPSCLQWIADNQLPDGSWGDDKIFL-------AHDRLINTLACIVALKSWNIH 153 (221)
Q Consensus 85 S~SaYDTAWVAmVp~--~~--g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~-------~~D~ll~TLAcvlAL~~w~~~ 153 (221)
..|.|-||-|.++=. .. .......-.+++||+..|.+||+|+..+... ....+..|.-|++||.+-+..
T Consensus 77 ~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~ 156 (292)
T cd02897 77 SGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLP 156 (292)
T ss_pred CcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCc
Confidence 558899999755411 11 1222346679999999999999999643211 113356799999999987643
Q ss_pred --hHHHHHHHHHHHhhhhh
Q 027637 154 --LDKCEKGISFVKGNLSK 170 (221)
Q Consensus 154 --~~~i~kGl~fL~~nl~~ 170 (221)
...|+||++||.++...
T Consensus 157 ~~~~~i~~a~~yL~~~~~~ 175 (292)
T cd02897 157 SERPVVEKALSCLEAALDS 175 (292)
T ss_pred cccHHHHHHHHHHHHhccc
Confidence 24699999999987654
No 9
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=97.56 E-value=0.00014 Score=72.47 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=57.8
Q ss_pred cchhhhhh--hhcccCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcc---------hhHHhhhHHHHHHHHhhcC-C
Q 027637 86 TSAYDTAW--VALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLA---------HDRLINTLACIVALKSWNI-H 153 (221)
Q Consensus 86 ~SaYDTAW--VAmVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~---------~D~ll~TLAcvlAL~~w~~-~ 153 (221)
+-.|-|+. .|+...-.....+.--.+++||++.|++|||||... ++. .-.+..|..||+||..-+. .
T Consensus 497 ~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~-~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~ 575 (635)
T TIGR01507 497 NYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDC-RSYEDPAYAGKGASTASQTAWALIALIAAGRAE 575 (635)
T ss_pred ccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCC-cccccccccCCCCCcHHHHHHHHHHHHHhCCCC
Confidence 34788988 444421111234556689999999999999999541 111 1246789999999998653 3
Q ss_pred hHHHHHHHHHHHhhhh
Q 027637 154 LDKCEKGISFVKGNLS 169 (221)
Q Consensus 154 ~~~i~kGl~fL~~nl~ 169 (221)
...|+||+.||.++-.
T Consensus 576 ~~~I~rav~~L~~~Q~ 591 (635)
T TIGR01507 576 SEAARRGVQYLVETQR 591 (635)
T ss_pred cHHHHHHHHHHHHhcC
Confidence 4579999999998533
No 10
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=97.46 E-value=0.00048 Score=68.57 Aligned_cols=82 Identities=23% Similarity=0.447 Sum_probs=57.0
Q ss_pred ccchhhhhhhh--cccCCCC-CCCCCchhHHHHHHHhcCCCCCCCCCCcCcc---------hhHHhhhHHHHHHHHhhc-
Q 027637 85 STSAYDTAWVA--LIKDIDG-NDAPQFPSCLQWIADNQLPDGSWGDDKIFLA---------HDRLINTLACIVALKSWN- 151 (221)
Q Consensus 85 S~SaYDTAWVA--mVp~~~g-~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~---------~D~ll~TLAcvlAL~~w~- 151 (221)
.+-.|-|+++. |.-.-.. ...+.-..+++||++.|++||+||+.. .+. .--+.+|.-||+||..-+
T Consensus 485 ~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~-~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~ 563 (621)
T TIGR01787 485 VNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDC-FSYEDPSYVGSGGSTPSQTGWALMALIAAGE 563 (621)
T ss_pred CCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCC-ccccccccCCCCCCCHHHHHHHHHHHHHcCc
Confidence 34579999843 4422111 112556789999999999999999642 111 124789999999999865
Q ss_pred CChHHHHHHHHHHHhh
Q 027637 152 IHLDKCEKGISFVKGN 167 (221)
Q Consensus 152 ~~~~~i~kGl~fL~~n 167 (221)
.+...|+||+.||.+.
T Consensus 564 ~~~~ai~rgv~~L~~~ 579 (621)
T TIGR01787 564 ADSEAIERGVKYLLET 579 (621)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3345799999999974
No 11
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=97.44 E-value=0.0006 Score=61.03 Aligned_cols=82 Identities=18% Similarity=0.376 Sum_probs=58.1
Q ss_pred cchhhhhhhhcccCCCCC--CCCCchhHHHHHHHhcCCCCCCCCCCcC--------cchhHHhhhHHHHHHHHhhcC-Ch
Q 027637 86 TSAYDTAWVALIKDIDGN--DAPQFPSCLQWIADNQLPDGSWGDDKIF--------LAHDRLINTLACIVALKSWNI-HL 154 (221)
Q Consensus 86 ~SaYDTAWVAmVp~~~g~--~~p~FP~~v~wLL~nQ~~DGsWG~~~~~--------~~~D~ll~TLAcvlAL~~w~~-~~ 154 (221)
...|.||++.+.=..-|. ..+.....++||++.|.+||+|+..... ...-.+..|..+|+||..... ..
T Consensus 217 ~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~~~ 296 (348)
T cd02889 217 CFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEPDS 296 (348)
T ss_pred cchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCCCH
Confidence 467999996554222222 2455678899999999999999853100 012257899999999999653 34
Q ss_pred HHHHHHHHHHHhh
Q 027637 155 DKCEKGISFVKGN 167 (221)
Q Consensus 155 ~~i~kGl~fL~~n 167 (221)
..++|++.||.++
T Consensus 297 ~~v~~a~~wL~~~ 309 (348)
T cd02889 297 EAVKRGVKYLLNT 309 (348)
T ss_pred HHHHHHHHHHHHh
Confidence 5799999999985
No 12
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=97.38 E-value=0.00057 Score=61.44 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=60.6
Q ss_pred CCcccchhhhhhhhcccC----CCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcc----------hhHHhhhHHHHHHH
Q 027637 82 GEISTSAYDTAWVALIKD----IDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLA----------HDRLINTLACIVAL 147 (221)
Q Consensus 82 G~iS~SaYDTAWVAmVp~----~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~----------~D~ll~TLAcvlAL 147 (221)
|.-..|.+.||-|.++=. .........-+.++||+.+|.+||+|+....+.. ...+..|.=+++||
T Consensus 75 ~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL 154 (297)
T cd02896 75 KNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIAL 154 (297)
T ss_pred CCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHH
Confidence 334678999999766421 1112223345689999999999999996632111 02466788999999
Q ss_pred HhhcCC--------hHHHHHHHHHHHhhhhh
Q 027637 148 KSWNIH--------LDKCEKGISFVKGNLSK 170 (221)
Q Consensus 148 ~~w~~~--------~~~i~kGl~fL~~nl~~ 170 (221)
..-+.. ...|+||++||.++...
T Consensus 155 ~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~ 185 (297)
T cd02896 155 QEARSICPPEVQNLDQSIRKAISYLENQLPN 185 (297)
T ss_pred HhhhccccccchhhHHHHHHHHHHHHHhccc
Confidence 996431 23699999999987654
No 13
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=97.38 E-value=0.00073 Score=67.04 Aligned_cols=83 Identities=20% Similarity=0.379 Sum_probs=57.2
Q ss_pred ccchhhhhh--hhcccCCCC-CCCCCchhHHHHHHHhcCCCCCCCCCCcC--------cchhHHhhhHHHHHHHHhhcC-
Q 027637 85 STSAYDTAW--VALIKDIDG-NDAPQFPSCLQWIADNQLPDGSWGDDKIF--------LAHDRLINTLACIVALKSWNI- 152 (221)
Q Consensus 85 S~SaYDTAW--VAmVp~~~g-~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~--------~~~D~ll~TLAcvlAL~~w~~- 152 (221)
.+-.|-|++ .||.-.-.. ...+.....++||++.|.+||+||..... ...-.+..|..||+||..-+.
T Consensus 501 ~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~ 580 (634)
T cd02892 501 VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEP 580 (634)
T ss_pred CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 356799998 455432111 22345678999999999999999953100 011237889999999998542
Q ss_pred ChHHHHHHHHHHHhh
Q 027637 153 HLDKCEKGISFVKGN 167 (221)
Q Consensus 153 ~~~~i~kGl~fL~~n 167 (221)
....|+||+.||.++
T Consensus 581 ~~~~i~r~i~wL~~~ 595 (634)
T cd02892 581 DSEAVERGIKYLLNT 595 (634)
T ss_pred ChHHHHHHHHHHHHc
Confidence 335799999999974
No 14
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=97.36 E-value=0.00064 Score=56.83 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=60.9
Q ss_pred ccchhhhhhhhcccC-CCC---CCCCCchhHHHHHHHhcCCCCCCCCCCcCc-----chhHHhhhHHHHHHHHhhcCC--
Q 027637 85 STSAYDTAWVALIKD-IDG---NDAPQFPSCLQWIADNQLPDGSWGDDKIFL-----AHDRLINTLACIVALKSWNIH-- 153 (221)
Q Consensus 85 S~SaYDTAWVAmVp~-~~g---~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~-----~~D~ll~TLAcvlAL~~w~~~-- 153 (221)
.+++++||++.+.=. ... ...+.-...++||+..|.+||+|+...... ....+..|..++.+|..-+..
T Consensus 79 ~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~ 158 (300)
T cd00688 79 YPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDP 158 (300)
T ss_pred CcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCC
Confidence 568999999666522 111 123345678999999999999998543211 134677899999999887654
Q ss_pred hHHHHHHHHHHHhhhh
Q 027637 154 LDKCEKGISFVKGNLS 169 (221)
Q Consensus 154 ~~~i~kGl~fL~~nl~ 169 (221)
...+++++.||.++..
T Consensus 159 ~~~~~~~~~~l~~~q~ 174 (300)
T cd00688 159 DPLIEKALDYLLSCQN 174 (300)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 3579999999998754
No 15
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=97.29 E-value=0.00047 Score=61.69 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=43.0
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcC---ChHHHHHHHHHHHhhh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNI---HLDKCEKGISFVKGNL 168 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~---~~~~i~kGl~fL~~nl 168 (221)
..++||+++|++||+|+... .-+.-|..|+.||..-+. ....++||+.||.+.-
T Consensus 3 ~~~~~L~~~Q~~dG~W~~~~-----~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q 59 (348)
T cd02889 3 RALDFLLSLQAPDGHWPGEY-----SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQ 59 (348)
T ss_pred hHHHHHHHhccCCCCccccC-----CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcC
Confidence 46899999999999999642 346778889999988654 3457999999999853
No 16
>PLN03012 Camelliol C synthase
Probab=97.21 E-value=0.0011 Score=67.76 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=59.5
Q ss_pred ccchhhhhh--hhcccC-CCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCc----------chhHHhhhHHHHHHHHhhc
Q 027637 85 STSAYDTAW--VALIKD-IDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFL----------AHDRLINTLACIVALKSWN 151 (221)
Q Consensus 85 S~SaYDTAW--VAmVp~-~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~----------~~D~ll~TLAcvlAL~~w~ 151 (221)
.+=.|=|+| .|++.- .+....+.-...++||++.|++|||||+.-... ..-.+.+|.=||+||..-+
T Consensus 615 v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag 694 (759)
T PLN03012 615 ICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAG 694 (759)
T ss_pred ccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcC
Confidence 566799999 455432 111233566789999999999999999752100 1234789999999999876
Q ss_pred CC---hHHHHHHHHHHHh-hhh
Q 027637 152 IH---LDKCEKGISFVKG-NLS 169 (221)
Q Consensus 152 ~~---~~~i~kGl~fL~~-nl~ 169 (221)
.. +..|+||+.||-+ |..
T Consensus 695 ~~~~~~~~i~Rg~~~Ll~~Q~~ 716 (759)
T PLN03012 695 QAERDPIPLHRAAKLIINSQLE 716 (759)
T ss_pred CCCCCcHHHHHHHHHHHHcccC
Confidence 32 2479999999986 443
No 17
>PLN02993 lupeol synthase
Probab=97.16 E-value=0.0015 Score=66.87 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=57.1
Q ss_pred ccchhhhhh--hhcccCC-CCCCCCCchhHHHHHHHhcCCCCCCCCCCc--C----c----chhHHhhhHHHHHHHHhhc
Q 027637 85 STSAYDTAW--VALIKDI-DGNDAPQFPSCLQWIADNQLPDGSWGDDKI--F----L----AHDRLINTLACIVALKSWN 151 (221)
Q Consensus 85 S~SaYDTAW--VAmVp~~-~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~--~----~----~~D~ll~TLAcvlAL~~w~ 151 (221)
.+=.|=|++ .||+..- .....+.--.+++||++.|++||+||+.-. . . ..--+.+|.=|++||..-+
T Consensus 615 v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG 694 (763)
T PLN02993 615 ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAG 694 (763)
T ss_pred cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcC
Confidence 345788888 4554221 112235677899999999999999997510 0 0 1234689999999999976
Q ss_pred CC---hHHHHHHHHHHHh
Q 027637 152 IH---LDKCEKGISFVKG 166 (221)
Q Consensus 152 ~~---~~~i~kGl~fL~~ 166 (221)
.. +..|+||+.||-+
T Consensus 695 ~~~~~~~~l~Rgi~~L~~ 712 (763)
T PLN02993 695 QAERDLIPLHRAAKLIIT 712 (763)
T ss_pred CCCCCcHHHHHHHHHHHh
Confidence 32 2479999999976
No 18
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=97.00 E-value=0.0031 Score=54.66 Aligned_cols=86 Identities=22% Similarity=0.275 Sum_probs=59.7
Q ss_pred ccchhhhhhhhccc----CCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCc-------chhHHhhhHHHHHHHHhhcCC
Q 027637 85 STSAYDTAWVALIK----DIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFL-------AHDRLINTLACIVALKSWNIH 153 (221)
Q Consensus 85 S~SaYDTAWVAmVp----~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~-------~~D~ll~TLAcvlAL~~w~~~ 153 (221)
.++.|.||.|.++= .......+..-.+++||+..|.+||+|+...... ..+.+-.|.-++.+|.+-+..
T Consensus 76 ~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~ 155 (282)
T cd02891 76 SGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKA 155 (282)
T ss_pred CCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhccc
Confidence 67999999966542 1122233457789999999999999998653211 123345688888899875532
Q ss_pred -hHHHHHHHHHHHhhhhh
Q 027637 154 -LDKCEKGISFVKGNLSK 170 (221)
Q Consensus 154 -~~~i~kGl~fL~~nl~~ 170 (221)
...+.+++.||.+++.+
T Consensus 156 ~~~~~~~a~~~L~~~~~~ 173 (282)
T cd02891 156 CDASIEKALAYLETQLDG 173 (282)
T ss_pred chHHHHHHHHHHHHhccc
Confidence 35799999999987753
No 19
>PLN03012 Camelliol C synthase
Probab=96.93 E-value=0.0015 Score=66.79 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=43.0
Q ss_pred hhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC---hHHHHHHHHHHHh
Q 027637 109 PSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH---LDKCEKGISFVKG 166 (221)
Q Consensus 109 P~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~kGl~fL~~ 166 (221)
-.+++||++.|.+||||++.=+.... -.|.+||.||..-+.. ...|+||+.||.+
T Consensus 593 ~rAv~~L~~~Q~~DGsW~G~Wgv~y~---YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls 650 (759)
T PLN03012 593 KKAAEYIENIQMLDGSWYGNWGICFT---YGTWFALAGLAAAGKTFNDCEAIRKGVHFLLA 650 (759)
T ss_pred HHHHHHHHHhcCCCCCCcccccccCC---cHHHHHHHHHHHhCccCCCcHHHHHHHHHHHH
Confidence 34899999999999999975221222 3799999999986642 2579999999986
No 20
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=96.61 E-value=0.003 Score=41.75 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=28.3
Q ss_pred hhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHH
Q 027637 109 PSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALK 148 (221)
Q Consensus 109 P~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~ 148 (221)
.+.++||+..|.+||+|+.... ...-+..|.-|+.+|+
T Consensus 4 ~~~~~~l~~~Q~~dGGf~~~~~--~~~d~~~t~~~~~~L~ 41 (44)
T PF00432_consen 4 EKLIRFLLSCQNPDGGFGGRPG--GESDTCYTYCALAALS 41 (44)
T ss_dssp HHHHHHHHHTBBTTSSBBSSTT--SSBBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCC--CCCChHHHHHHHHHHH
Confidence 4678999999999999996521 1234677777777765
No 21
>PLN02993 lupeol synthase
Probab=96.60 E-value=0.0038 Score=63.89 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=42.2
Q ss_pred hhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC---hHHHHHHHHHHHhh
Q 027637 109 PSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH---LDKCEKGISFVKGN 167 (221)
Q Consensus 109 P~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~kGl~fL~~n 167 (221)
-.+++||++.|.+||||.+.=+....+ -|..||.||..-+.. ...|+||+.||.+.
T Consensus 593 ~rAv~yL~~~Q~~DGSW~G~Wgv~y~Y---gT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~ 651 (763)
T PLN02993 593 EKAVQFIESKQTPDGSWYGNWGICFIY---ATWFALGGLAAAGKTYNDCLAMRKGVHFLLTI 651 (763)
T ss_pred HHHHHHHHHhcCCCCCcccccccccCc---HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 357999999999999996542222223 799999999876543 25799999999863
No 22
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=96.53 E-value=0.0041 Score=54.58 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=60.5
Q ss_pred CCcccchhhhhhhhcccC----CCCCCCCCchhHHHHHHHhcCCCCCCCCCCcC-c------chhHHhhhHHHHHHHHhh
Q 027637 82 GEISTSAYDTAWVALIKD----IDGNDAPQFPSCLQWIADNQLPDGSWGDDKIF-L------AHDRLINTLACIVALKSW 150 (221)
Q Consensus 82 G~iS~SaYDTAWVAmVp~----~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~-~------~~D~ll~TLAcvlAL~~w 150 (221)
+.-++|.+=||.|.++=. .-..+...--+.++||+.+|.+||+|.+.+.. . ..+.+.-|.=+++||..-
T Consensus 21 ~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~ 100 (246)
T PF07678_consen 21 SDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEA 100 (246)
T ss_dssp TTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHC
T ss_pred cCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhh
Confidence 445778999999876522 21222223357899999999999999865321 0 135688888899999986
Q ss_pred c--------CChHHHHHHHHHHHhhhhhh
Q 027637 151 N--------IHLDKCEKGISFVKGNLSKL 171 (221)
Q Consensus 151 ~--------~~~~~i~kGl~fL~~nl~~~ 171 (221)
+ .....++||+.||++++...
T Consensus 101 ~~~~~~~~~~~~~~i~kA~~~L~~~~~~~ 129 (246)
T PF07678_consen 101 GSLCDSEKPEYENAINKALNYLERHLDNI 129 (246)
T ss_dssp HCCHTTTHHCHHHHHHHHHHHHHHHHGCT
T ss_pred hhhccccchhhHHHHHHHHHHHHHhcccc
Confidence 5 11246999999999885444
No 23
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=96.46 E-value=0.0047 Score=61.83 Aligned_cols=75 Identities=27% Similarity=0.332 Sum_probs=50.9
Q ss_pred hhhhhhhcccCCCC--CCCCCchhHHHHHHHhcCCCCCC-CCCCcCcchhHHhhhHHHHHHHHhhcCC--hHHHHHHHHH
Q 027637 89 YDTAWVALIKDIDG--NDAPQFPSCLQWIADNQLPDGSW-GDDKIFLAHDRLINTLACIVALKSWNIH--LDKCEKGISF 163 (221)
Q Consensus 89 YDTAWVAmVp~~~g--~~~p~FP~~v~wLL~nQ~~DGsW-G~~~~~~~~D~ll~TLAcvlAL~~w~~~--~~~i~kGl~f 163 (221)
-+||-|.++=..-+ ...+.--.+++||+++|.+|||| |.-+ .. -+-.|.+|+.||...+.. ...|+||+.|
T Consensus 452 d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg---~~-~~Y~T~~al~aL~~~g~~~~~~~i~rAv~w 527 (635)
T TIGR01507 452 DVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG---VN-YLYGTGAVLSALKAVGIDTREPYIQKALAW 527 (635)
T ss_pred cHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC---Cc-cccHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 34777544311111 11345557899999999999999 4322 11 255899999999987643 4579999999
Q ss_pred HHhh
Q 027637 164 VKGN 167 (221)
Q Consensus 164 L~~n 167 (221)
|.+.
T Consensus 528 L~~~ 531 (635)
T TIGR01507 528 LESH 531 (635)
T ss_pred HHHh
Confidence 9864
No 24
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=96.25 E-value=0.0086 Score=50.05 Aligned_cols=82 Identities=26% Similarity=0.410 Sum_probs=56.7
Q ss_pred ccchhhhhhhhcccCCCCC-CCCCchhHHHHHHHhcCCCCCCCCCC-cCcchhHHhhhHHHHHHHHhhcC--ChHHHHHH
Q 027637 85 STSAYDTAWVALIKDIDGN-DAPQFPSCLQWIADNQLPDGSWGDDK-IFLAHDRLINTLACIVALKSWNI--HLDKCEKG 160 (221)
Q Consensus 85 S~SaYDTAWVAmVp~~~g~-~~p~FP~~v~wLL~nQ~~DGsWG~~~-~~~~~D~ll~TLAcvlAL~~w~~--~~~~i~kG 160 (221)
.++.|-|+|+++.=..-|. ..+.-.++++||++.|.+||+|+... .....-....|.+++.||..... ....+.++
T Consensus 184 ~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~ 263 (300)
T cd00688 184 ESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKL 263 (300)
T ss_pred cccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHH
Confidence 3578999996654332232 24556799999999999999998541 00112346677788888887653 24578999
Q ss_pred HHHHHh
Q 027637 161 ISFVKG 166 (221)
Q Consensus 161 l~fL~~ 166 (221)
+.+|.+
T Consensus 264 ~~~L~~ 269 (300)
T cd00688 264 VKWLLS 269 (300)
T ss_pred HHHHHh
Confidence 999987
No 25
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=96.08 E-value=0.013 Score=58.60 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=44.5
Q ss_pred CCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC---hHHHHHHHHHHHhhh
Q 027637 106 PQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH---LDKCEKGISFVKGNL 168 (221)
Q Consensus 106 p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~kGl~fL~~nl 168 (221)
...-.+++||++.|.+||||.+.-.... +-.|..++.||...+.. ...|+||+.||.+.-
T Consensus 460 ~~i~rAl~~L~~~Q~~DGsw~g~wg~~y---~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q 522 (621)
T TIGR01787 460 NVLERALEYLRREQRADGSWFGRWGVNY---TYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQ 522 (621)
T ss_pred HHHHHHHHHHHHhcCCCCCCcccCCCCC---chhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhc
Confidence 3456789999999999999965421111 23588999999886543 257999999999853
No 26
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=96.01 E-value=0.018 Score=57.70 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHhccCCC------CCcccchhhhhh--hhcccCC--CCCCCCCchhHHHHHHHhcC------------
Q 027637 63 NEIKKLDHIIKSMLGSMDG------GEISTSAYDTAW--VALIKDI--DGNDAPQFPSCLQWIADNQL------------ 120 (221)
Q Consensus 63 ~~~~~lv~~ik~ll~~~~~------G~iS~SaYDTAW--VAmVp~~--~g~~~p~FP~~v~wLL~nQ~------------ 120 (221)
..++.-++.+++.+-.-++ +..|+. ||||. .||...- +....+..-.+++||++.|.
T Consensus 276 p~~~k~l~~l~~~~~~~~~~g~~~q~~~s~~-WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~ 354 (634)
T TIGR03463 276 PEVAAHLEGLEDYRYEDDDRGLRYNGYNSSE-WDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFR 354 (634)
T ss_pred HHHHHHHHHHHhhEEEcCCCCEEEeeCCCCc-hhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCC
Confidence 3444455555555532233 233554 99999 4554321 11122555789999999994
Q ss_pred --CCCCCCCCCcCcchhHHhhhHHHHHHHHhhc---------CChHHHHHHHHHHHh
Q 027637 121 --PDGSWGDDKIFLAHDRLINTLACIVALKSWN---------IHLDKCEKGISFVKG 166 (221)
Q Consensus 121 --~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~---------~~~~~i~kGl~fL~~ 166 (221)
+.|+|+=...-......-.|..++.||.... +..+++.+|+.||.+
T Consensus 355 ~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~ 411 (634)
T TIGR03463 355 DPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILS 411 (634)
T ss_pred CCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHH
Confidence 6799983311112345677888888877632 233579999999985
No 27
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=95.59 E-value=0.035 Score=55.21 Aligned_cols=102 Identities=18% Similarity=0.323 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHhccCCCCCc-----ccchhhhhhhhc--ccC-CCCCCCCCchhHHHHHHHhcC--------------
Q 027637 63 NEIKKLDHIIKSMLGSMDGGEI-----STSAYDTAWVAL--IKD-IDGNDAPQFPSCLQWIADNQL-------------- 120 (221)
Q Consensus 63 ~~~~~lv~~ik~ll~~~~~G~i-----S~SaYDTAWVAm--Vp~-~~g~~~p~FP~~v~wLL~nQ~-------------- 120 (221)
..++.-++.+++.+-...+|.+ -..+||||.+.+ ... ......+.-..+++||+++|.
T Consensus 278 ~~~~~~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~ 357 (634)
T cd02892 278 PAFKRHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHL 357 (634)
T ss_pred HHHHHHHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCC
Confidence 4455556666665522112211 225899999444 322 111233455689999999996
Q ss_pred CCCCCCCC---CcCcchhHHhhhHHHHHHHHhhc--------CChHHHHHHHHHHHhh
Q 027637 121 PDGSWGDD---KIFLAHDRLINTLACIVALKSWN--------IHLDKCEKGISFVKGN 167 (221)
Q Consensus 121 ~DGsWG~~---~~~~~~D~ll~TLAcvlAL~~w~--------~~~~~i~kGl~fL~~n 167 (221)
+.|+|+=. ......| .|..|+.||..-. +..+.|++|+.||.+.
T Consensus 358 ~~GGW~fs~~~~~~pd~d---~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~ 412 (634)
T cd02892 358 RKGGWAFSTANQGYPDSD---DTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGM 412 (634)
T ss_pred CCCCCCCCCCCCCCCCcC---chHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhc
Confidence 46777622 1111233 6888888887643 2235799999999864
No 28
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=95.51 E-value=0.063 Score=47.41 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=44.4
Q ss_pred CCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhhh
Q 027637 105 APQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNI-HLDKCEKGISFVKGNL 168 (221)
Q Consensus 105 ~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~kGl~fL~~nl 168 (221)
......+++||++.|.+||+|+.... ..-....|..|+.+|+-=+. ....+++.++||.+.-
T Consensus 145 ~~~~~~~~~~l~~~Q~~dGGf~~~~~--~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q 207 (286)
T cd02890 145 DIDKEKLIDYILSCQNYDGGFGGVPG--AESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQ 207 (286)
T ss_pred hhhHHHHHHHHHHhCCCCCCcCCCCC--CCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhC
Confidence 46688999999999999999995321 11224557777777766443 2456999999999753
No 29
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=94.79 E-value=0.23 Score=43.82 Aligned_cols=104 Identities=16% Similarity=0.068 Sum_probs=65.0
Q ss_pred hhhHHHHHHHHHHHh-ccCC-CCC---cccchhhhhhhhcccC-CCC--CCCCCchhHHHHHHHhcCCCCCCCCCCcCcc
Q 027637 62 SNEIKKLDHIIKSML-GSMD-GGE---ISTSAYDTAWVALIKD-IDG--NDAPQFPSCLQWIADNQLPDGSWGDDKIFLA 133 (221)
Q Consensus 62 ~~~~~~lv~~ik~ll-~~~~-~G~---iS~SaYDTAWVAmVp~-~~g--~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~ 133 (221)
...++..++-++++. +..+ ++. ..+.+.-|.+...+=. .+. ...+.-..+++||.+.|.+||+|+.... .
T Consensus 46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~--~ 123 (286)
T cd02890 46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLG--G 123 (286)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCC--C
Confidence 456778888888877 5332 221 2344556777333222 222 1334456799999999999999975321 1
Q ss_pred hhHHhhhHHHHHHHHhhcCCh-HHHHHHHHHHHhh
Q 027637 134 HDRLINTLACIVALKSWNIHL-DKCEKGISFVKGN 167 (221)
Q Consensus 134 ~D~ll~TLAcvlAL~~w~~~~-~~i~kGl~fL~~n 167 (221)
..-+-.|-.||.+|.--+... ..+++.++||.+.
T Consensus 124 ~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~ 158 (286)
T cd02890 124 EVDTRFVYCALSILSLLNILTDIDKEKLIDYILSC 158 (286)
T ss_pred CchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHh
Confidence 123556777777777755433 5689999999873
No 30
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=94.24 E-value=0.13 Score=44.63 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=41.1
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhc----CChHHHHHHHHHHHhhh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWN----IHLDKCEKGISFVKGNL 168 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~----~~~~~i~kGl~fL~~nl 168 (221)
+.+++|+..|++|||||--.... .-..--|.-++.+|.... +.+..|+||+.||.+.-
T Consensus 53 ~~~~~l~~~Q~~dGgf~~w~~~~-~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q 114 (282)
T cd02891 53 KGYQRLLTYQRSDGSFSAWGNSD-SGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQ 114 (282)
T ss_pred HHHHHHHhhcCCCCCccccCCCC-CCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 56999999999999998432111 112344777888887642 44567999999999763
No 31
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=93.61 E-value=0.26 Score=44.17 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=43.1
Q ss_pred CchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC-hHHHHHHHHHHHhh
Q 027637 107 QFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH-LDKCEKGISFVKGN 167 (221)
Q Consensus 107 ~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-~~~i~kGl~fL~~n 167 (221)
-...+++||++.|.+||+|+.... ..-....|-.||.+|.--+.- ...+++..+||.+.
T Consensus 149 ~~~~~~~~l~~~q~~dGGF~~~~~--~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~ 208 (287)
T cd02894 149 DVDKAVDYLLSCYNFDGGFGCRPG--AESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCER 208 (287)
T ss_pred hHHHHHHHHHHcCCCCCCcCCCCC--CCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHh
Confidence 357899999999999999996421 112356788888888775532 23588999999864
No 32
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=93.34 E-value=0.11 Score=47.83 Aligned_cols=21 Identities=19% Similarity=0.537 Sum_probs=18.3
Q ss_pred chhHHHHHHHhcCCCCCCCCC
Q 027637 108 FPSCLQWIADNQLPDGSWGDD 128 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~ 128 (221)
|-.+++|||.-|.++|+|..-
T Consensus 69 ~~rgld~LL~aQypnGGWPQf 89 (290)
T TIGR02474 69 ARKGIEYLLKAQYPNGGWPQF 89 (290)
T ss_pred HHHHHHHHHhhhCCCCCcCcc
Confidence 557799999999999999843
No 33
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=91.84 E-value=0.17 Score=45.03 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=35.5
Q ss_pred ccchhhhhhhhcccC-CCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHh
Q 027637 85 STSAYDTAWVALIKD-IDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKS 149 (221)
Q Consensus 85 S~SaYDTAWVAmVp~-~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~ 149 (221)
++.+=+|||+.|.=. ......+.--..++||.++|.+||+|+.- . .|.-|+.||.+
T Consensus 235 ~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q~~~Ggf~sT-----Q----dt~~al~AL~~ 291 (292)
T cd02897 235 SAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQRNSLGGFSST-----Q----DTVVALQALAK 291 (292)
T ss_pred cchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcCCCCCCcccH-----H----HHHHHHHHHHc
Confidence 456677999655421 12111122223466999999999999964 3 46677888865
No 34
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=90.99 E-value=0.57 Score=43.01 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=42.1
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNI-HLDKCEKGISFVKGN 167 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~kGl~fL~~n 167 (221)
.-.+++||+..|.+||+++.... ...-+..|.+|+.+|.--+. ..-..++.+.||.+.
T Consensus 58 ~~~~i~~l~~cq~~~GGF~~~~~--~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~ 116 (316)
T PLN03201 58 RDEVVSWVMRCQHESGGFGGNTG--HDPHILYTLSAVQILALFDRLDLLDADKVASYVAGL 116 (316)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCC--CcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence 46899999999999999986532 12368899999888876431 112356688888763
No 35
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=87.09 E-value=1.6 Score=39.04 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=37.3
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNI-HLDKCEKGISFVKGN 167 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~kGl~fL~~n 167 (221)
-...++||..-|.+||+|+.... ... -+-.|-+|+.+|.--+. ....+++.++||.+.
T Consensus 102 ~~~~~~~i~~~q~~dGgf~~~~~-~e~-d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~ 160 (287)
T cd02894 102 KEKIAKFIKGLQNEDGSFSGDKW-GEV-DTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSC 160 (287)
T ss_pred HHHHHHHHHHHcCCCCCeecCCC-CCc-hHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHc
Confidence 35789999999999999986421 111 23345555544444332 223589999999864
No 36
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=86.97 E-value=1.8 Score=39.01 Aligned_cols=81 Identities=10% Similarity=-0.065 Sum_probs=56.2
Q ss_pred cchhhhhhhhcccCCCCCCCCCchhHHHHHHHhcCCCCCCCCC---------CcCcchhHHhhhHHHHHHHHhhcCChHH
Q 027637 86 TSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDD---------KIFLAHDRLINTLACIVALKSWNIHLDK 156 (221)
Q Consensus 86 ~SaYDTAWVAmVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~---------~~~~~~D~ll~TLAcvlAL~~w~~~~~~ 156 (221)
.++|.+|-++..=.+-|+. .=...++||...|..||+|+.. ......-.+=-|.=|++||.+.+- .+.
T Consensus 187 ~~~Y~~Al~ayALal~~~~--~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~-~~~ 263 (297)
T cd02896 187 QRPYALAITAYALALADSP--LSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGD-IEY 263 (297)
T ss_pred CChHHHHHHHHHHHHcCCh--hhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCC-chh
Confidence 4889999977764444432 3457899999999999999831 000011146778888999998763 346
Q ss_pred HHHHHHHHHhhhh
Q 027637 157 CEKGISFVKGNLS 169 (221)
Q Consensus 157 i~kGl~fL~~nl~ 169 (221)
+.+++.+|.+|-.
T Consensus 264 a~~iv~WL~~qr~ 276 (297)
T cd02896 264 ANPIARWLTEQRN 276 (297)
T ss_pred HHHHHHHHHhcCC
Confidence 8889999987643
No 37
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=86.43 E-value=2.3 Score=39.11 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=34.2
Q ss_pred hhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHH--HHHHHhhcCChHHHHHHHHHHHhh
Q 027637 109 PSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLAC--IVALKSWNIHLDKCEKGISFVKGN 167 (221)
Q Consensus 109 P~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAc--vlAL~~w~~~~~~i~kGl~fL~~n 167 (221)
...++||..-|.+||||+.... ...|. --|-.| +++|.. ......+++.++||.+.
T Consensus 107 ~~~~~~l~s~Q~~dGgF~~~~~-ge~D~-r~ty~a~a~l~LL~-~~~~i~~~~~~~~i~sc 164 (316)
T PLN03201 107 DKVASYVAGLQNEDGSFSGDEW-GEIDT-RFSYCALCCLSLLK-RLDKINVEKAVDYIVSC 164 (316)
T ss_pred HHHHHHHHHhcCCCCCccCCCC-CCccH-HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHh
Confidence 4789999999999999986421 11222 122222 333332 12234689999999864
No 38
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=83.70 E-value=3.1 Score=37.81 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=41.1
Q ss_pred hhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC----hHHHHHHHHHHHh
Q 027637 109 PSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH----LDKCEKGISFVKG 166 (221)
Q Consensus 109 P~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~----~~~i~kGl~fL~~ 166 (221)
...++||...|.+||+.+.... ..--+.+|.+|+.+|.--+.. ....++.+.||.+
T Consensus 50 ~~~i~~i~~~q~~~GgF~~~~~--~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~ 109 (299)
T cd02893 50 DDVISFLRRCQNPSGGFGGGPG--QLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLS 109 (299)
T ss_pred HHHHHHHHHhcCCCCCCCCCCC--CCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHH
Confidence 5889999999999999986521 234589999999988775432 1234558888875
No 39
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=82.98 E-value=1.9 Score=44.45 Aligned_cols=51 Identities=25% Similarity=0.364 Sum_probs=37.5
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHh-hcCC-----hHHHHHHHHHHHh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKS-WNIH-----LDKCEKGISFVKG 166 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~-w~~~-----~~~i~kGl~fL~~ 166 (221)
..++||-+.|++||||-+.= +++=|.+..-|+.- |..| ...|+||+.||-.
T Consensus 593 ~av~~ie~~Q~~DGSWyGsW------gvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~ 649 (760)
T KOG0497|consen 593 KAVEFIEKLQLPDGSWYGSW------GVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLS 649 (760)
T ss_pred HHHHHHHHcCCCCCcccchh------hHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHh
Confidence 46889999999999997652 46667776666655 3322 2479999999865
No 40
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=81.55 E-value=2.3 Score=43.76 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=44.8
Q ss_pred CCchhHHHHHHHhcCCCCCCCCCCc--------Cc--chhHHhhhHHHHHHHHhhcCC---hHHHHHHHHHHH
Q 027637 106 PQFPSCLQWIADNQLPDGSWGDDKI--------FL--AHDRLINTLACIVALKSWNIH---LDKCEKGISFVK 165 (221)
Q Consensus 106 p~FP~~v~wLL~nQ~~DGsWG~~~~--------~~--~~D~ll~TLAcvlAL~~w~~~---~~~i~kGl~fL~ 165 (221)
+.-..++++||..|++||+||.... .+ ..--+++|.=|+.||.--+-. +.-++||..+|-
T Consensus 638 ~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~li 710 (760)
T KOG0497|consen 638 EAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLI 710 (760)
T ss_pred HHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHH
Confidence 3345779999999999999997521 11 244589999999999886532 235899999886
No 41
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=79.79 E-value=4.5 Score=36.98 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=38.3
Q ss_pred CCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC----hHHHHHHHHHHHhh
Q 027637 106 PQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH----LDKCEKGISFVKGN 167 (221)
Q Consensus 106 p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~----~~~i~kGl~fL~~n 167 (221)
.-....++||+..|..||++|.......+ .-.|--|+-+|.--+.- ...+++.++||.+.
T Consensus 165 ~d~~~li~~l~s~Q~~dGGF~~~~~~Esh--~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~r 228 (307)
T cd02895 165 IDKEKLIDYIKSSQSYDGGFGQGPGLESH--GGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHR 228 (307)
T ss_pred ccHHHHHHHHHHccCCCCCccCCCCCCcc--ccHHHHHHHHHHHcCCccccccccHHHHHHHHHHh
Confidence 34678999999999999999854211111 22455555555443321 34688889998753
No 42
>PLN02710 farnesyltranstransferase subunit beta
Probab=77.04 E-value=5.9 Score=38.64 Aligned_cols=57 Identities=19% Similarity=0.210 Sum_probs=40.7
Q ss_pred hhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC----hHHHHHHHHHHHhh
Q 027637 109 PSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH----LDKCEKGISFVKGN 167 (221)
Q Consensus 109 P~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~----~~~i~kGl~fL~~n 167 (221)
...++||..-|.+||+.|+... ..--+..|.+||.+|.--+.. .-..++-+.||.+.
T Consensus 95 ~~ii~~l~~cQ~~dGGFgg~pg--~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~ 155 (439)
T PLN02710 95 NDTIDFLSRCQDPNGGYGGGPG--QLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRM 155 (439)
T ss_pred HHHHHHHHHhcCCCcCCCCCCC--CCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHc
Confidence 4689999999999999986421 233589999999998764421 11356677888753
No 43
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.64 E-value=6.9 Score=36.48 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=43.6
Q ss_pred hhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhc-CChHHHHHHHHHHHhhh
Q 027637 109 PSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWN-IHLDKCEKGISFVKGNL 168 (221)
Q Consensus 109 P~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~-~~~~~i~kGl~fL~~nl 168 (221)
-+-+.|++.=|+.||+.+..... -.-|++||.||--|...+ +.-..++|-.+|+....
T Consensus 69 eeiv~~v~~C~~~~GGfa~~~Gh--d~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq 127 (329)
T KOG0366|consen 69 EEIVSFVLSCQHEDGGFAGCPGH--DPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQ 127 (329)
T ss_pred HHHHHHHHheecCCCCcCCCCCC--ChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhc
Confidence 47899999999999999865321 345999999999888876 44445666678887543
No 44
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=72.92 E-value=11 Score=34.33 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=34.4
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchh-HHhhhHHHHHHHHhhcCChHHHHHHHHHHHhh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHD-RLINTLACIVALKSWNIHLDKCEKGISFVKGN 167 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D-~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~n 167 (221)
-...++||..-|.+||+|+.... ...| |-.=+..+++.|..- ..+..+++.++||.+.
T Consensus 100 ~~~~~~~l~~~q~~dGgf~~~~~-~e~D~r~tycava~~~lL~~-~~~~~~~~~~~~l~~c 158 (299)
T cd02893 100 REALYKFLLSLKQPDGSFRMHVG-GEVDVRGTYCAISVASLLNI-LTDELFEGVAEYILSC 158 (299)
T ss_pred HHHHHHHHHHhcCCCCCeeCCCC-CCchHhHHHHHHHHHHHhCC-CchhhHHHHHHHHHHc
Confidence 35689999999999999985421 1122 111122222333321 1345689999999863
No 45
>PLN02592 ent-copalyl diphosphate synthase
Probab=66.30 E-value=14 Score=38.63 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=55.3
Q ss_pred HHH--HHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhhhhhhhccccccCcce-eeeehH
Q 027637 112 LQW--IADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCG-FEVAFP 188 (221)
Q Consensus 112 v~w--LL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~~~~e~~~~~pvG-FEIifP 188 (221)
++| ++..|..|||=+.. -.+|.|++.. +| -+++++||++-+.+....++..-|+. || -=
T Consensus 253 ~dw~~v~~~q~~~GS~~~S--------PSaTAaaL~~--~~------d~~cl~YL~~~~~k~~GgVP~vyP~d~fE--~L 314 (800)
T PLN02592 253 LDWEKLLKLQCQDGSFLFS--------PSSTAFALMQ--TK------DENCLEYLNKAVQRFNGGVPNVYPVDLFE--HI 314 (800)
T ss_pred CCHHHHhcccCCCCCccCC--------chHHHHHHhc--cC------chHHHHHHHHHHHHcCCCCCCCCCCcHHH--HH
Confidence 455 77788889987654 3578888753 33 36788999988888755555444443 22 24
Q ss_pred HHHHHHHHCCCccCCChH---HHHHHHH
Q 027637 189 SLLEIARSLDIEIPDHSH---VLQNIYA 213 (221)
Q Consensus 189 aLL~~a~~lgl~~p~~~~---~l~~i~~ 213 (221)
.|++.++++||.--|... +|+.++.
T Consensus 315 wlVDtLqRLGIs~hF~~EI~~iLd~iy~ 342 (800)
T PLN02592 315 WAVDRLQRLGISRYFEPEIKECIDYVHR 342 (800)
T ss_pred HHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 678999999998666432 3455544
No 46
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=60.58 E-value=28 Score=31.83 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=40.7
Q ss_pred hhHHHHHHHhc----CCCCCCCCCCcC--------cchhHHhhhHHHHHHHHhhcCCh--HHHHHHHHHHHhh
Q 027637 109 PSCLQWIADNQ----LPDGSWGDDKIF--------LAHDRLINTLACIVALKSWNIHL--DKCEKGISFVKGN 167 (221)
Q Consensus 109 P~~v~wLL~nQ----~~DGsWG~~~~~--------~~~D~ll~TLAcvlAL~~w~~~~--~~i~kGl~fL~~n 167 (221)
.+.++||...| .+||+.++.... ...-.+..|.+|+.+|.--+... ...++-+.||.+-
T Consensus 52 ~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~ 124 (307)
T cd02895 52 DDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKL 124 (307)
T ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHh
Confidence 47899999999 999999864211 12345888999988876543221 2456778888764
No 47
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=58.78 E-value=8.7 Score=33.68 Aligned_cols=34 Identities=18% Similarity=0.537 Sum_probs=26.1
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSW 150 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w 150 (221)
-...++||.++|..+|+|+.- . .|.-|+.||..+
T Consensus 211 ~~~iv~WL~~qr~~~Ggf~ST-----Q----dTvvaL~AL~~Y 244 (246)
T PF07678_consen 211 ASPIVRWLISQRNSGGGFGST-----Q----DTVVALQALAEY 244 (246)
T ss_dssp HHHHHHHHHHCTTTTSSTSSH-----H----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccCcH-----H----HHHHHHHHHHHH
Confidence 346699999999999999964 3 366677777654
No 48
>PLN02279 ent-kaur-16-ene synthase
Probab=57.43 E-value=29 Score=36.29 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=55.4
Q ss_pred HHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhhhhhhhccccccCcce-eeeehHHHHHH
Q 027637 115 IADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCG-FEVAFPSLLEI 193 (221)
Q Consensus 115 LL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~~~~e~~~~~pvG-FEIifPaLL~~ 193 (221)
|+..|+.|||=+.. -.+|.|++.. .+ -.++++||+.-+.+....++..-|+- ||. -.|++.
T Consensus 218 v~~~q~~~Gs~~~S--------PsaTAa~l~~-----~~---~~~~~~yL~~~~~~~~g~vP~~yp~~~fe~--l~lvd~ 279 (784)
T PLN02279 218 VMKYQRKNGSLFNS--------PSTTAAAFSH-----LQ---NAGCLRYLRSLLQKFGNAVPTVYPLDQYAR--LSMVDT 279 (784)
T ss_pred HHhhcCCCCCcccC--------cHHHHHHHHc-----cC---ChHHHHHHHHHHHhcCCCCCCCCcccHHHH--hHHHHH
Confidence 78999999997754 3578777651 12 37888999988888765565555553 333 468999
Q ss_pred HHHCCCccCCChHH---HHHHH
Q 027637 194 ARSLDIEIPDHSHV---LQNIY 212 (221)
Q Consensus 194 a~~lgl~~p~~~~~---l~~i~ 212 (221)
++++|+.-.|..++ |+.++
T Consensus 280 L~rlGi~~hF~~EI~~~L~~~~ 301 (784)
T PLN02279 280 LERLGIDRHFRKEIKSVLDETY 301 (784)
T ss_pred HHHhCCccccHHHHHHHHHHHH
Confidence 99999987764433 44444
No 49
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=56.19 E-value=9.8 Score=27.85 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhhhhccccccCcceeeeehHHHHHHHHHCCCc
Q 027637 158 EKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIE 200 (221)
Q Consensus 158 ~kGl~fL~~nl~~~~~e~~~~~pvGFEIifPaLL~~a~~lgl~ 200 (221)
.||+.||++.+..--.+....+.+-+.-+---++..|++.|+.
T Consensus 3 ~r~~~Fl~~WI~e~V~~~~~~d~is~~~La~kl~adA~a~Gi~ 45 (64)
T PF05589_consen 3 TRGIEFLDSWIAENVPDTPKADIISAAELAEKLFADAEAAGIP 45 (64)
T ss_pred chHHHHHHHHHHhcCCCccccchhhHHHHHHHHHHHHHHcCCC
Confidence 6899999987765433333344444444555667788888885
No 50
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=53.08 E-value=16 Score=34.35 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=44.9
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCCh----HHHHHHHHHHHhhhhhhhccccccCcceeee
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHL----DKCEKGISFVKGNLSKLENENEEHTTCGFEV 185 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~----~~i~kGl~fL~~nl~~~~~e~~~~~pvGFEI 185 (221)
.-+++|+..|.+||.-|. +-+|--|+-||..-.... ..+.|+++.+.+.+..- .=+.|...-=
T Consensus 219 ~~~~kIl~~q~~~G~~GN---------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i~~G----~F~nP~a~aQ 285 (326)
T PF01122_consen 219 SLVEKILSQQKPNGLFGN---------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEISQG----AFQNPMAIAQ 285 (326)
T ss_dssp HHHHHHHHTB-TTS-BSS---------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHHTTT----TT-SHHHHHH
T ss_pred HHHHHHHHhcCCCCcccc---------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhcC----CCCCHHHHHH
Confidence 345778999999998885 458999999999865432 35999999998765422 1244444445
Q ss_pred ehHHHH
Q 027637 186 AFPSLL 191 (221)
Q Consensus 186 ifPaLL 191 (221)
|+|+|.
T Consensus 286 iLPaL~ 291 (326)
T PF01122_consen 286 ILPALN 291 (326)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 677764
No 51
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=46.28 E-value=2.9 Score=25.88 Aligned_cols=14 Identities=43% Similarity=1.004 Sum_probs=6.8
Q ss_pred HHHhcCCCCCCCCC
Q 027637 115 IADNQLPDGSWGDD 128 (221)
Q Consensus 115 LL~nQ~~DGsWG~~ 128 (221)
|-..|++||+|--+
T Consensus 5 I~~s~RpDGt~RK~ 18 (27)
T PF09282_consen 5 IPASQRPDGTWRKE 18 (27)
T ss_dssp E--EE-TTS-EE--
T ss_pred cCcccCCCCCcccc
Confidence 45679999999743
No 52
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.37 E-value=52 Score=30.88 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=32.7
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchh-HHhhhHHHHHHHHhhcCChHHHHHHHHHHHhh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHD-RLINTLACIVALKSWNIHLDKCEKGISFVKGN 167 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D-~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~n 167 (221)
....||.-.|++|||..+.. ....| |+.-+.-|-++|..- .....+++|+.|+.+-
T Consensus 118 ~v~~yi~gLq~edGsF~gD~-wGEvDTRfs~~av~~L~lLg~-ld~~nve~aVd~~~~C 174 (329)
T KOG0366|consen 118 KVASYIKGLQQEDGSFSGDI-WGEVDTRFSYCAVACLALLGK-LDTINVEKAVDFVLSC 174 (329)
T ss_pred HHHHHHHhhcCcCCcccCCc-ccccchhhhHHHHHHHHHHhh-HHHhhHHHHHHHHHhh
Confidence 45899999999999964331 11111 333333333333331 1135689999999873
No 53
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.21 E-value=37 Score=32.91 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=32.4
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhc
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWN 151 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~ 151 (221)
..+++|-.=|.|.|+.|+..+ ..--|.+|-|||.||..=+
T Consensus 124 ~~i~fL~~c~~PeGGfgGGPG--Ql~HLA~TYAAVnaL~~~~ 163 (423)
T KOG0365|consen 124 NAIDFLFTCQGPEGGFGGGPG--QLPHLAPTYAAVNALCLCG 163 (423)
T ss_pred HHHHHHHhcCCCCCCCCCCCc--cchhhhHHHHHHHHHHhcC
Confidence 568899999999999986532 3556999999999998844
No 54
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=40.56 E-value=16 Score=33.82 Aligned_cols=21 Identities=29% Similarity=0.669 Sum_probs=14.8
Q ss_pred chhHHHHHHHhcCCCCCCCCC
Q 027637 108 FPSCLQWIADNQLPDGSWGDD 128 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~ 128 (221)
|-..++|||..|.+.|+|-..
T Consensus 64 ~~kgl~ylL~aQypnGGWPQ~ 84 (289)
T PF09492_consen 64 FLKGLDYLLKAQYPNGGWPQF 84 (289)
T ss_dssp HHHHHHHHHHHS-TTS--BSE
T ss_pred HHHHHHHHHHhhCCCCCCCcc
Confidence 446799999999999999753
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=38.16 E-value=28 Score=34.80 Aligned_cols=24 Identities=33% Similarity=0.536 Sum_probs=18.2
Q ss_pred CCCchhHH-----HHHHHhcCCCCCCCCC
Q 027637 105 APQFPSCL-----QWIADNQLPDGSWGDD 128 (221)
Q Consensus 105 ~p~FP~~v-----~wLL~nQ~~DGsWG~~ 128 (221)
.|.+++.+ -|++++|..||+|+.+
T Consensus 122 ~~~~~~~~~~~a~l~~~e~Qn~dg~w~g~ 150 (517)
T COG1657 122 APVTSLRVRKEAELWKLERQNDDGSWRGI 150 (517)
T ss_pred ccchhhhhhhhhheeeeeecccccccccc
Confidence 34455444 4999999999999765
No 56
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=36.87 E-value=2.4e+02 Score=27.88 Aligned_cols=134 Identities=14% Similarity=0.177 Sum_probs=75.3
Q ss_pred ccccccccccccccccchhhhhhh-hhhhhHHHHHHHHHHHhccCCCCCcccchhhhhh-hhcccCCC--CCCCCCchhH
Q 027637 36 RLVLKVRKCLLSRMDDNQVEVLEV-SASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAW-VALIKDID--GNDAPQFPSC 111 (221)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lv~~ik~ll~~~~~G~iS~SaYDTAW-VAmVp~~~--g~~~p~FP~~ 111 (221)
.+++++..|.++...+........ ....+++.+++++|.++... .-....|+.=| |=.+..++ -+-+..--+|
T Consensus 3 ~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~---~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~ 79 (542)
T cd00684 3 SANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDS---EYPVDLFERLWLIDRLQRLGISYHFEDEIKEI 79 (542)
T ss_pred CCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 357889999885554432211111 45677899999999999732 11224566656 44444432 2323334466
Q ss_pred HHHHHHhcCCCCCCCCCC---------------c---------C-----cchhHHhhhHHHHHHHHhhc----CChHHHH
Q 027637 112 LQWIADNQLPDGSWGDDK---------------I---------F-----LAHDRLINTLACIVALKSWN----IHLDKCE 158 (221)
Q Consensus 112 v~wLL~nQ~~DGsWG~~~---------------~---------~-----~~~D~ll~TLAcvlAL~~w~----~~~~~i~ 158 (221)
++.|-++...+|-+...+ + | .-.+.+.+..-++|.|-+-. .+++-.+
T Consensus 80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd 159 (542)
T cd00684 80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD 159 (542)
T ss_pred HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence 666666554443122110 0 0 01233456677788887742 2344468
Q ss_pred HHHHHHHhhhhhhh
Q 027637 159 KGISFVKGNLSKLE 172 (221)
Q Consensus 159 kGl~fL~~nl~~~~ 172 (221)
++..|-...|....
T Consensus 160 eA~~ft~~~L~~~~ 173 (542)
T cd00684 160 EALSFTTKHLEEKL 173 (542)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999888887764
No 57
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.69 E-value=59 Score=29.78 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=41.9
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhhhhh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSK 170 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~ 170 (221)
..++||-..|++||+..-.. ...|.|-+|-=||=.+..-+...-+-+|-+.||.++++.
T Consensus 10 rvi~fi~~RrhedGGy~f~~--~Lpdti~~TyYAi~i~s~lg~evPr~EktiefL~d~~qt 68 (274)
T COG1689 10 RVIEFIEKRRHEDGGYCFVS--QLPDTINDTYYAIKIYSLLGHEVPRKEKTIEFLYDQMQT 68 (274)
T ss_pred HHHHHHHHhhcCCCCeEEec--cCcchhhhhhhhhhhhhhcCCcCchHHHHHHHHHHHHHH
Confidence 46899999999999987332 124567777766655555444445789999999986654
No 58
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.82 E-value=1.3e+02 Score=28.71 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=39.4
Q ss_pred CCCCCCCchhHHHHHHHhcCCCCCCCCCC----cCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHH-hhhh
Q 027637 101 DGNDAPQFPSCLQWIADNQLPDGSWGDDK----IFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVK-GNLS 169 (221)
Q Consensus 101 ~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~----~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~-~nl~ 169 (221)
+.-..+.|-..++||..-|+=||+-|.-. +.....+-++|||-+-+|-. + +.+++=.++|. ||++
T Consensus 169 g~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~--l--s~~E~l~~Wl~~RQ~s 238 (342)
T COG5029 169 GDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDK--L--SDVEKLIRWLAERQLS 238 (342)
T ss_pred hhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccc--c--chHHHHHHHHHHcccc
Confidence 34446789999999999999999999542 22234455555555444433 1 12455555554 3443
No 59
>PLN02710 farnesyltranstransferase subunit beta
Probab=27.65 E-value=1.5e+02 Score=29.13 Aligned_cols=58 Identities=9% Similarity=0.008 Sum_probs=33.3
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKG 166 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~ 166 (221)
-...++||+.-|.+|||-+........-|-.=+..+++.|..- .....+++-..||.+
T Consensus 145 r~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~-l~~~~~e~~~~~I~s 202 (439)
T PLN02710 145 REKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNI-LDDELVKGVGDYILS 202 (439)
T ss_pred HHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCc-CchhhHHHHHHHHHH
Confidence 4689999999999999987432111111122222223333321 234457888888876
No 60
>PF02467 Whib: Transcription factor WhiB; InterPro: IPR003482 WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation. The process of mycelium formation in Streptomyces, which occurs in response to nutrient limitation, is controlled by a number of whi genes, named for the white colour of aerial hyphae when mutations occur in these genes. The normal colour is grey. The exact role of WhiB is not clear, but a mutation in the gene results in white, tightly coiled aerial hyphae.
Probab=26.11 E-value=35 Score=24.58 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=21.7
Q ss_pred CCCchhHHHHHHHhcCCCCCCCCC
Q 027637 105 APQFPSCLQWIADNQLPDGSWGDD 128 (221)
Q Consensus 105 ~p~FP~~v~wLL~nQ~~DGsWG~~ 128 (221)
-|..-+|.+|-++++.+.|-||+-
T Consensus 35 CPVr~~C~~~Al~~~~~~GVWGG~ 58 (66)
T PF02467_consen 35 CPVRAECLEYALDTREEHGVWGGL 58 (66)
T ss_pred ChhHHHHHHHHHHcCCCeEEECCC
Confidence 577889999999999999999975
No 61
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=25.11 E-value=36 Score=34.11 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=33.6
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCCh---HHHHHHHHHHHh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHL---DKCEKGISFVKG 166 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~---~~i~kGl~fL~~ 166 (221)
..++|||..|.+||+|-+.-+ .-.+=-|..++-+|..-+... -.+.+++.++..
T Consensus 356 ~a~e~LL~~Q~~~GsW~g~w~---v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~ 412 (517)
T COG1657 356 RALEWLLSDQEPDGSWYGRWG---VCYIYGTSGALSALALVGETDENEVLVRKLISWLVS 412 (517)
T ss_pred HHHhhhhhhccccCceeeEEE---EEEEEehhhhhhhhhccCccccchHHHHHHHHHhhh
Confidence 469999999999999965421 111334555555555533322 257777777764
No 62
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=24.17 E-value=58 Score=26.03 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=41.5
Q ss_pred cccccccccccchhhhhhhhhhhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhcccCCCCCCCCCchhHHHHHHHh
Q 027637 41 VRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADN 118 (221)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~~~~~G~iS~SaYDTAWVAmVp~~~g~~~p~FP~~v~wLL~n 118 (221)
.--|...+++|....-...+.....+.+..++|.+.. |++==+-.+|=.+| +|+-++||-++
T Consensus 41 ~Y~W~G~Iee~~E~~liiKT~~~~~~~l~~~ikelHp-----------YevPeIi~i~v~~g-----~~eYL~Wl~~~ 102 (104)
T COG1324 41 IYWWEGKIEEDEEVALIIKTTSEKFEELIERIKELHP-----------YEVPEIIALPVDNG-----LPEYLEWLNEE 102 (104)
T ss_pred EEEECCeeeecceeEEEEEehHHhHHHHHHHHHHhCC-----------CCCceEEEEEeccC-----CHHHHHHHHHh
Confidence 4457777766632222225557778888888886644 88877666764456 68999999765
No 63
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=20.74 E-value=63 Score=36.19 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=56.0
Q ss_pred CCC--cccchhhhhhhhcccCCC----CCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC-
Q 027637 81 GGE--ISTSAYDTAWVALIKDID----GNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH- 153 (221)
Q Consensus 81 ~G~--iS~SaYDTAWVAmVp~~~----g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~- 153 (221)
+|+ -+.|+..||.|-.+=... .-+..-=++.++||+++|.++|+--..+. ...-.+..++.-.++|..|...
T Consensus 993 Fg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e~~~-v~~~~~qg~l~~~~~l~~~~l~~ 1071 (1436)
T KOG1366|consen 993 FGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKEVGE-VLHNEMQGGLQDIVALTAIVLSV 1071 (1436)
T ss_pred hcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEecccc-ccchhhhcCCCCcceeeeEeeee
Confidence 465 677888888866552211 12233457899999999999999864421 1222344444333677776532
Q ss_pred -----hHHHHHHHHHHHhhhhhh
Q 027637 154 -----LDKCEKGISFVKGNLSKL 171 (221)
Q Consensus 154 -----~~~i~kGl~fL~~nl~~~ 171 (221)
...+.++.+|+.+++...
T Consensus 1072 ~~~~~~~~~~~a~~~~~~~~~~~ 1094 (1436)
T KOG1366|consen 1072 ILDVDNASIQKAVAYLEESLDSG 1094 (1436)
T ss_pred eccchhhHHHHHHHHHhhccCcc
Confidence 235778888888776654
No 64
>KOG4793 consensus Three prime repair exonuclease [Replication, recombination and repair]
Probab=20.29 E-value=1.5e+02 Score=27.98 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=41.8
Q ss_pred HHHHHhhcCChHH-HHHHHHHHHhhhhhhhccccccCcceeeeehHHHHHHHHHCCCccCCChHHHH
Q 027637 144 IVALKSWNIHLDK-CEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQ 209 (221)
Q Consensus 144 vlAL~~w~~~~~~-i~kGl~fL~~nl~~~~~e~~~~~pvGFEIifPaLL~~a~~lgl~~p~~~~~l~ 209 (221)
++||.+-..-..+ .+-=+.||+++-..|- .-.|-|+|-+||=|-+++..+|+..|.|.-+++
T Consensus 93 ~~~l~rr~~~D~dla~LL~afls~lp~p~C----LVaHng~~~dfpil~qela~lg~~lpq~lvcvd 155 (318)
T KOG4793|consen 93 FLALQRRLAFDKDLAKLLTAFLSRLPTPGC----LVAHNGNEYDFPILAQELAGLGYSLPQDLVCVD 155 (318)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhcCCCCce----EEeecCCccccHHHHHHHHhcCccchhhhcCcc
Confidence 6777775543333 3445667776544331 234679999999999999999999887543333
Done!