Query 027637
Match_columns 221
No_of_seqs 124 out of 220
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 22:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sdr_A Alpha-bisabolene syntha 100.0 1.7E-58 5.8E-63 460.8 14.6 211 7-221 2-217 (817)
2 3s9v_A Abietadiene synthase, c 100.0 5.6E-55 1.9E-59 434.0 16.2 183 38-221 5-189 (785)
3 3pya_A ENT-copalyl diphosphate 100.0 7.7E-55 2.6E-59 430.1 15.4 161 59-221 5-165 (727)
4 3p5p_A Taxadiene synthase; cla 100.0 1.3E-53 4.5E-58 423.2 13.2 159 61-221 6-166 (764)
5 1qqf_A Protein (complement C3D 97.3 0.0011 3.9E-08 56.8 9.9 88 83-170 62-173 (277)
6 1hzf_A Complement factor C4A; 97.3 0.00081 2.8E-08 60.6 8.6 83 85-167 117-226 (367)
7 2wy7_A Complement C3D fragment 97.2 0.0017 5.7E-08 56.9 9.8 88 83-170 78-189 (310)
8 4acq_A Alpha-2-macroglobulin; 96.6 0.0056 1.9E-07 64.6 9.5 88 85-172 1013-1113(1451)
9 2sqc_A Squalene-hopene cyclase 96.6 0.0069 2.4E-07 58.5 9.4 82 85-167 491-584 (631)
10 1w6k_A Lanosterol synthase; cy 96.6 0.0046 1.6E-07 61.1 8.1 83 85-167 583-680 (732)
11 2h6f_B Protein farnesyltransfe 96.5 0.0073 2.5E-07 56.6 8.2 62 103-166 217-279 (437)
12 3dss_B Geranylgeranyl transfer 96.4 0.0044 1.5E-07 55.8 6.3 61 105-167 161-222 (331)
13 2sqc_A Squalene-hopene cyclase 96.4 0.0055 1.9E-07 59.2 7.1 79 86-167 444-526 (631)
14 2h6f_B Protein farnesyltransfe 96.3 0.0033 1.1E-07 58.9 4.5 58 108-167 123-184 (437)
15 1w6k_A Lanosterol synthase; cy 96.2 0.013 4.4E-07 57.9 8.6 102 64-167 72-183 (732)
16 3dss_B Geranylgeranyl transfer 96.2 0.0043 1.5E-07 55.8 4.8 58 108-167 68-126 (331)
17 2hr0_B Complement C3 alpha' ch 96.1 0.026 8.8E-07 56.6 10.2 89 82-170 322-434 (915)
18 1n4q_B Geranyltransferase type 94.4 0.11 3.6E-06 47.8 7.9 65 100-166 185-254 (377)
19 1hzf_A Complement factor C4A; 94.2 0.074 2.5E-06 47.7 6.3 58 109-168 94-155 (367)
20 3q7a_B Farnesyltransferase bet 93.9 0.085 2.9E-06 50.8 6.3 59 109-167 112-179 (520)
21 1n4q_B Geranyltransferase type 93.7 0.085 2.9E-06 48.4 5.7 59 107-167 143-203 (377)
22 1qqf_A Protein (complement C3D 93.3 0.16 5.6E-06 43.2 6.6 55 110-166 42-100 (277)
23 2wy7_A Complement C3D fragment 93.1 0.18 6.2E-06 43.8 6.6 55 110-166 58-116 (310)
24 2pn5_A TEP1R, thioester-contai 92.9 0.31 1E-05 50.5 9.0 89 82-170 895-999 (1325)
25 1gxm_A Pectate lyase; mechanis 92.8 0.083 2.8E-06 48.2 4.2 56 107-166 98-180 (332)
26 1r76_A Pectate lyase; A-helica 90.5 0.24 8.1E-06 46.4 4.6 20 108-127 177-196 (408)
27 3q7a_B Farnesyltransferase bet 90.5 0.33 1.1E-05 46.7 5.7 56 109-167 170-227 (520)
28 4fxk_B Complement C4-A alpha c 89.4 1.4 4.9E-05 42.8 9.3 89 81-169 390-505 (767)
29 2b39_A C3; thioester, immune d 88.8 1.3 4.3E-05 47.3 9.0 91 81-171 1068-1182(1661)
30 3cu7_A Complement C5; Mg domai 85.3 2 7E-05 45.7 8.2 90 81-170 1069-1181(1676)
31 2pn5_A TEP1R, thioester-contai 84.8 1.5 5.1E-05 45.4 6.8 57 110-168 876-937 (1325)
32 2hr0_B Complement C3 alpha' ch 78.1 3.2 0.00011 41.5 6.3 55 110-166 303-361 (915)
33 2bb6_A TCII, TC II, transcobal 78.0 2.8 9.7E-05 39.1 5.4 55 106-169 202-264 (414)
34 2pmv_A Gastric intrinsic facto 76.3 2.6 8.9E-05 39.2 4.7 53 108-169 185-240 (399)
35 3sdr_A Alpha-bisabolene syntha 74.5 3.1 0.00011 41.9 5.0 88 108-212 237-329 (817)
36 3prx_B Cobra venom factor; imm 73.9 0.66 2.3E-05 49.9 0.0 90 82-171 1053-1166(1642)
37 3p5p_A Taxadiene synthase; cla 73.1 3 0.0001 41.7 4.4 88 108-212 185-277 (764)
38 4acq_A Alpha-2-macroglobulin; 71.1 5.2 0.00018 42.4 5.9 58 110-168 987-1051(1451)
39 2pmv_A Gastric intrinsic facto 69.4 12 0.00042 34.7 7.5 74 65-149 181-259 (399)
40 3s9v_A Abietadiene synthase, c 68.6 11 0.00039 37.7 7.5 78 109-203 210-289 (785)
41 1r76_A Pectate lyase; A-helica 65.7 6.3 0.00022 36.8 4.7 61 106-166 245-325 (408)
42 3g4d_A (+)-delta-cadinene synt 65.4 3.5 0.00012 39.8 3.0 46 31-77 19-64 (554)
43 2j5c_A 1,8-cineole synthase; t 65.1 2.7 9.1E-05 40.5 2.1 71 5-78 8-79 (569)
44 2bb6_A TCII, TC II, transcobal 63.8 24 0.00084 32.8 8.3 101 64-171 105-218 (414)
45 1gxm_A Pectate lyase; mechanis 56.4 10 0.00035 34.4 4.3 56 110-166 35-108 (332)
46 3m00_A Aristolochene synthase; 56.3 8.3 0.00028 37.1 3.8 45 33-77 16-60 (550)
47 1vhf_A Periplasmic divalent ca 56.1 5 0.00017 31.1 1.8 69 41-125 40-108 (113)
48 3pya_A ENT-copalyl diphosphate 53.0 32 0.0011 34.3 7.4 82 114-212 192-276 (727)
49 4fxk_B Complement C4-A alpha c 43.9 15 0.00052 35.6 3.5 34 108-150 603-636 (767)
50 3n0f_A Isoprene synthase; terp 36.8 16 0.00054 35.2 2.3 45 34-78 15-59 (555)
51 3dra_B Geranylgeranyltransfera 34.1 65 0.0022 29.6 5.9 58 107-166 192-249 (390)
52 2nuh_A Periplasmic divalent ca 29.7 24 0.00081 27.4 1.9 70 41-126 43-112 (118)
53 3cu7_A Complement C5; Mg domai 28.9 41 0.0014 35.8 4.1 34 108-150 1267-1300(1676)
54 1rk8_C PYM protein, within the 28.0 13 0.00046 25.8 0.2 15 114-128 12-26 (58)
55 2b39_A C3; thioester, immune d 25.0 39 0.0013 36.0 3.1 34 108-150 1248-1281(1661)
56 2ong_A 4S-limonene synthase; m 23.5 27 0.00093 33.2 1.4 79 35-119 3-84 (543)
57 1n1b_A (+)-bornyl diphosphate 21.6 28 0.00097 33.2 1.1 46 33-78 5-50 (549)
58 3dra_B Geranylgeranyltransfera 21.4 31 0.0011 31.7 1.3 57 110-166 57-126 (390)
No 1
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.7e-58 Score=460.83 Aligned_cols=211 Identities=35% Similarity=0.568 Sum_probs=164.3
Q ss_pred CcccccCCCcccccccccccchhcccceeccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHHhc-cCCCC---
Q 027637 7 SPLAFVTPESSLSCNYHSTQIVYISRVVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLG-SMDGG--- 82 (221)
Q Consensus 7 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~-~~~~G--- 82 (221)
.||+++.++++++|+.+++ +...+++++.+++.|.++.+++...+.......++++.|+++||.++. ++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~----~~~~Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~~~~~~g~~g 77 (817)
T 3sdr_A 2 AGVSAVSKVSSLVCDLSST----SGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLNPAITGDGES 77 (817)
T ss_dssp -------------------------------------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred CcccccccccccccccccC----CCccCCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhccccCCCCCc
Confidence 4789999999999998855 456788999999999999988854333235568889999999999998 88766
Q ss_pred CcccchhhhhhhhcccCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHH
Q 027637 83 EISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGIS 162 (221)
Q Consensus 83 ~iS~SaYDTAWVAmVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~ 162 (221)
++|||+||||||||||+++|+++|+||+||+||++||++|||||++++++.+|||+||||||+||++|++++++|+||++
T Consensus 78 ~~S~S~YDTAWVAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~~~i~~Gl~ 157 (817)
T 3sdr_A 78 MITPSAYDTAWVARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVGDLQVEQGIE 157 (817)
T ss_dssp CCCCCHHHHHHHHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccccCHHHhhHHheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887788999999999999999999999999999999
Q ss_pred HHHhhhhhhhcc-ccccCcceeeeehHHHHHHHHHCCCccCCChHHHHHHHHHHHhhhcC
Q 027637 163 FVKGNLSKLENE-NEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR 221 (221)
Q Consensus 163 fL~~nl~~~~~e-~~~~~pvGFEIifPaLL~~a~~lgl~~p~~~~~l~~i~~~R~~KL~r 221 (221)
||++|+++|.++ +.+++|||||||||+||++|+++||+||++.+.++.|.++|+.||+|
T Consensus 158 fl~~nl~~~~~~~~~~~~~vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~ 217 (817)
T 3sdr_A 158 FIKSNLELVKDETDQDSLVTDFEIIFPSLLREAQSLRLGLPYDLPYIHLLQTKRQERLAK 217 (817)
T ss_dssp HHHHHHTTCCSGGGSCSCCTTHHHHHHHHHHHHHHTTCSCCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccccCCCCcceeeeHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHhC
Confidence 999999999764 36799999999999999999999999999999999999999999986
No 2
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=5.6e-55 Score=434.00 Aligned_cols=183 Identities=39% Similarity=0.650 Sum_probs=154.0
Q ss_pred ccccccccccccccchhhhh-hhhhhhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhcccCCCCCCCCCchhHHHHHH
Q 027637 38 VLKVRKCLLSRMDDNQVEVL-EVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIA 116 (221)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lv~~ik~ll~~~~~G~iS~SaYDTAWVAmVp~~~g~~~p~FP~~v~wLL 116 (221)
..+++.|+++.+.....+.. ..+.++++++++++||+++.++++|++|||+||||||||||+++|+++|+||+||+||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVamvp~~~~~~~p~Fp~~~~wil 84 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFRCMGYGETNPSAYDTAWVARIPAVDGSDNPHFPETVEWIL 84 (785)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHHHCSSCCCCCCHHHHHHHTTSBCTTSCSSBSSHHHHHHHH
T ss_pred cCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhhcCCCCcccCcHHHhhHHhccccCCCCCCCCchHHHHHHH
Confidence 46678888887777433222 24457889999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhhhhhhhccccccCcc-eeeeehHHHHHHHH
Q 027637 117 DNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTC-GFEVAFPSLLEIAR 195 (221)
Q Consensus 117 ~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~~~~e~~~~~pv-GFEIifPaLL~~a~ 195 (221)
+||++|||||++.+++.+|||+||||||+||++|++++++|+||++||++|+++|.++ ..++|| |||||||+||++|+
T Consensus 85 ~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~~~~i~~Gl~fl~~nl~~~~~~-~~~~~i~gfeiifP~ll~~a~ 163 (785)
T 3s9v_A 85 QNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGETQVQKGIEFFRTQAGKMEDE-ADSHRPSGFEIVFPAMLKEAK 163 (785)
T ss_dssp HCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTGGGS-TTSCCCTTHHHHHHHHHHHHH
T ss_pred HccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHhhcc-CcCCCccceeeeHHHHHHHHH
Confidence 9999999999887778899999999999999999999999999999999999999765 478886 99999999999999
Q ss_pred HCCCccCCChHHHHHHHHHHHhhhcC
Q 027637 196 SLDIEIPDHSHVLQNIYAMRNFKLKR 221 (221)
Q Consensus 196 ~lgl~~p~~~~~l~~i~~~R~~KL~r 221 (221)
++||+||++.+.++.|.++|+.||+|
T Consensus 164 ~~gl~~~~~~~~~~~l~~~r~~kL~~ 189 (785)
T 3s9v_A 164 ILGLDLPYDLPFLKQIIEKREAKLKR 189 (785)
T ss_dssp HTTCCCCTTSHHHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCchhhHHHHHHHHHHHhC
Confidence 99999999999999999999999986
No 3
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=7.7e-55 Score=430.07 Aligned_cols=161 Identities=57% Similarity=0.985 Sum_probs=151.6
Q ss_pred hhhhhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhcccCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHh
Q 027637 59 VSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLI 138 (221)
Q Consensus 59 ~~~~~~~~~lv~~ik~ll~~~~~G~iS~SaYDTAWVAmVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll 138 (221)
.++++++++++++||+|+++|++|++|||+||||||||||++ +++|+||+||+||++||++|||||++++++.+|||+
T Consensus 5 ~~~~~~~~~~~~~ir~~l~~~~~g~~S~S~YDTAWVAmvp~~--~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll 82 (727)
T 3pya_A 5 GSNSNAFKEAVKSVKTILRNLTDGEITISAYDTAWVALIDAG--DKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHDRLI 82 (727)
T ss_dssp ---CCHHHHHHHHHHHHHHTCCSCCCCCCHHHHHHHHTCBCS--SSSBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhccCCcccCcHHHhHHHhhccCC--CCCCCCHHHHHHHHhcCCCCCCCCCCCCcchhhHHH
Confidence 355788999999999999999999999999999999999998 567999999999999999999999887788899999
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHhhhhhhhccccccCcceeeeehHHHHHHHHHCCCccCCChHHHHHHHHHHHhh
Q 027637 139 NTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFK 218 (221)
Q Consensus 139 ~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~~~~e~~~~~pvGFEIifPaLL~~a~~lgl~~p~~~~~l~~i~~~R~~K 218 (221)
||||||+||++|++++++|+||++||++|+++|.+++.+++|||||||||+||++|+++||+||++.+.|++|+++|+.|
T Consensus 83 ~TLAcvlAL~~w~~~~~~i~rGl~fl~~nl~~~~~~~~~~~pvGfeiifP~Ll~~a~~~gl~~p~~~~~l~~i~~~r~~k 162 (727)
T 3pya_A 83 NTLACVVALRSWNLFPHQCNKGITFFRENIGKLEDENDEHMPIGFEVAFPSLLEIARGINIDVPYDSPVLKDIYAKKELK 162 (727)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGTTCCSSCCCCTTHHHHHHHHHHHHHHTTCCSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhccCCCCCCceeeeeHHHHHHHHHHcCcCCCCCchHHHHHHHhHHHH
Confidence 99999999999999999999999999999999987767899999999999999999999999999999999999999999
Q ss_pred hcC
Q 027637 219 LKR 221 (221)
Q Consensus 219 L~r 221 (221)
|+|
T Consensus 163 L~r 165 (727)
T 3pya_A 163 LTR 165 (727)
T ss_dssp HHH
T ss_pred HhC
Confidence 975
No 4
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.3e-53 Score=423.21 Aligned_cols=159 Identities=38% Similarity=0.707 Sum_probs=150.8
Q ss_pred hhhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhcccCC--CCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHh
Q 027637 61 ASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDI--DGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLI 138 (221)
Q Consensus 61 ~~~~~~~lv~~ik~ll~~~~~G~iS~SaYDTAWVAmVp~~--~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll 138 (221)
.+.++++++++||+|+.++++|++|||+||||||||||++ +|+++|+||+||+||++||++|||||++++++.+|||+
T Consensus 6 ~~~~~~~~~~~i~~~~~~~~~g~~S~S~YDTAWVamvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll 85 (764)
T 3p5p_A 6 YQERADELVVKIKDMFNALGDGDISPSAYDTAWVARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCDRLL 85 (764)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCCCCCHHHHHHHHHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhcCCCCcccCcHHHHHHHHhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHHHHH
Confidence 3678999999999999999999999999999999999998 89999999999999999999999999887788999999
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHhhhhhhhccccccCcceeeeehHHHHHHHHHCCCccCCChHHHHHHHHHHHhh
Q 027637 139 NTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFK 218 (221)
Q Consensus 139 ~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~~~~e~~~~~pvGFEIifPaLL~~a~~lgl~~p~~~~~l~~i~~~R~~K 218 (221)
||||||+||++|++++++|+||++||++|+ +..++ .+++|||||||||+||++|+++||+||++.+.++.|.++|+.|
T Consensus 86 ~TlAcvlAL~~w~~~~~~i~~Gl~fl~~nl-~~~~~-~~~~~vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~k 163 (764)
T 3p5p_A 86 NTTNSVIALSVWKTGHSQVQQGAEFIAENL-RLLNE-EDELSPDFQIIFPALLQKAKALGINLPYDLPFIKYLSTTREAR 163 (764)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-TTCCT-TSCCCTTHHHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHH-HhhcC-CCCCCceeeeeHHHHHHHHHHcCCCCCCCchhHHHHHHhHHHH
Confidence 999999999999999999999999999999 65443 6899999999999999999999999999999999999999999
Q ss_pred hcC
Q 027637 219 LKR 221 (221)
Q Consensus 219 L~r 221 (221)
|+|
T Consensus 164 L~~ 166 (764)
T 3p5p_A 164 LTD 166 (764)
T ss_dssp HHH
T ss_pred Hhc
Confidence 975
No 5
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=97.34 E-value=0.0011 Score=56.84 Aligned_cols=88 Identities=17% Similarity=0.299 Sum_probs=57.3
Q ss_pred Ccccchhhhhhhhcc----cCCCCCCCCCchhHHHHHHH-hcCCCCCCCCCCcCcc-----------hhHHhhhHHHHHH
Q 027637 83 EISTSAYDTAWVALI----KDIDGNDAPQFPSCLQWIAD-NQLPDGSWGDDKIFLA-----------HDRLINTLACIVA 146 (221)
Q Consensus 83 ~iS~SaYDTAWVAmV----p~~~g~~~p~FP~~v~wLL~-nQ~~DGsWG~~~~~~~-----------~D~ll~TLAcvlA 146 (221)
.-.+|.+.||.|..+ .+....+....-..++||+. .|.+||+|.+...... ..++.-|.-+++|
T Consensus 62 ~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~a 141 (277)
T 1qqf_A 62 NRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIA 141 (277)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHH
Confidence 335789999997654 22112222344578999995 9999999986532111 1234447778889
Q ss_pred HHhh------cCC--hHHHHHHHHHHHhhhhh
Q 027637 147 LKSW------NIH--LDKCEKGISFVKGNLSK 170 (221)
Q Consensus 147 L~~w------~~~--~~~i~kGl~fL~~nl~~ 170 (221)
|..- .+. ...|.||+.||.++...
T Consensus 142 L~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~ 173 (277)
T 1qqf_A 142 LQEARDICEGQVNSLPGSINKAGEYLEASYLN 173 (277)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhccccCCCchHHHHHHHHHHHHHHhcc
Confidence 9875 222 34699999999987554
No 6
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=97.27 E-value=0.00081 Score=60.63 Aligned_cols=83 Identities=22% Similarity=0.279 Sum_probs=56.4
Q ss_pred ccchhhhhhhhcc----cCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcc----------hhHHhhhHHHHHHHHhh
Q 027637 85 STSAYDTAWVALI----KDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLA----------HDRLINTLACIVALKSW 150 (221)
Q Consensus 85 S~SaYDTAWVAmV----p~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~----------~D~ll~TLAcvlAL~~w 150 (221)
.++.|-||.|... ...-.......-.+++||++.|.+||+|++...... ...+.-|.-+++||..-
T Consensus 117 ~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~ 196 (367)
T 1hzf_A 117 DSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHG 196 (367)
T ss_dssp CCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccccchHHHHHHHHhh
Confidence 4788999996542 211122334567889999999999999987531111 13466788889999764
Q ss_pred cC-------------ChHHHHHHHHHHHhh
Q 027637 151 NI-------------HLDKCEKGISFVKGN 167 (221)
Q Consensus 151 ~~-------------~~~~i~kGl~fL~~n 167 (221)
.. ....|+||+.||.++
T Consensus 197 g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 197 LAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp HTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 31 123699999999876
No 7
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=97.21 E-value=0.0017 Score=56.89 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=57.4
Q ss_pred Ccccchhhhhhhhcc----cCCCCCCCCCchhHHHHHHH-hcCCCCCCCCCCcCcc-----------hhHHhhhHHHHHH
Q 027637 83 EISTSAYDTAWVALI----KDIDGNDAPQFPSCLQWIAD-NQLPDGSWGDDKIFLA-----------HDRLINTLACIVA 146 (221)
Q Consensus 83 ~iS~SaYDTAWVAmV----p~~~g~~~p~FP~~v~wLL~-nQ~~DGsWG~~~~~~~-----------~D~ll~TLAcvlA 146 (221)
.-.+|.+.||.|..+ .+.........-..++||+. .|.+||+|.+...... ..++.-|.-+++|
T Consensus 78 ~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~a 157 (310)
T 2wy7_A 78 KRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLIS 157 (310)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHH
Confidence 345789999997654 22112222344578999995 9999999986531110 1234447788889
Q ss_pred HHhh------cCC--hHHHHHHHHHHHhhhhh
Q 027637 147 LKSW------NIH--LDKCEKGISFVKGNLSK 170 (221)
Q Consensus 147 L~~w------~~~--~~~i~kGl~fL~~nl~~ 170 (221)
|..- .+. ...|+||+.||.++...
T Consensus 158 L~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~ 189 (310)
T 2wy7_A 158 LQEAKDICEEQVNSLPGSITKAGDFLEANYMN 189 (310)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGG
T ss_pred HHhcccccccCCcchHHHHHHHHHHHHHHhhc
Confidence 9875 222 34699999999987654
No 8
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=96.63 E-value=0.0056 Score=64.65 Aligned_cols=88 Identities=14% Similarity=0.194 Sum_probs=62.5
Q ss_pred ccchhhhhhhhcc----cCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCc-------chhHHhhhHHHHHHHHhhcCC
Q 027637 85 STSAYDTAWVALI----KDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFL-------AHDRLINTLACIVALKSWNIH 153 (221)
Q Consensus 85 S~SaYDTAWVAmV----p~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~-------~~D~ll~TLAcvlAL~~w~~~ 153 (221)
..|.+-||+|..+ ...-.......-++++||+.+|.+||+|.+.+... ..+.+--|.-++.||..-+..
T Consensus 1013 ~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~ 1092 (1451)
T 4acq_A 1013 QGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLT 1092 (1451)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCC
T ss_pred CCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCC
Confidence 4789999996543 22112334567788999999999999997542110 023566799999999986542
Q ss_pred --hHHHHHHHHHHHhhhhhhh
Q 027637 154 --LDKCEKGISFVKGNLSKLE 172 (221)
Q Consensus 154 --~~~i~kGl~fL~~nl~~~~ 172 (221)
...|+||+.||++++..+.
T Consensus 1093 ~~~~~i~~A~~~L~~~~~~~~ 1113 (1451)
T 4acq_A 1093 VTHPVVRNALFCLESAWKTAQ 1113 (1451)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhhhcc
Confidence 3469999999998876653
No 9
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=96.62 E-value=0.0069 Score=58.50 Aligned_cols=82 Identities=22% Similarity=0.399 Sum_probs=56.9
Q ss_pred ccchhhhhhhhcc-cCCC-CCCCCCchhHHHHHHHhcCCCCCCCCCCcCc---------chhHHhhhHHHHHHHHhhcCC
Q 027637 85 STSAYDTAWVALI-KDID-GNDAPQFPSCLQWIADNQLPDGSWGDDKIFL---------AHDRLINTLACIVALKSWNIH 153 (221)
Q Consensus 85 S~SaYDTAWVAmV-p~~~-g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~---------~~D~ll~TLAcvlAL~~w~~~ 153 (221)
.+.+|.|+.+... -..+ ....+.....++||++.|.+||+||... .+ ..-.+..|.-||+||...+..
T Consensus 491 ~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~-~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~ 569 (631)
T 2sqc_A 491 VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDC-RSYEDPAYAGKGASTPSQTAWALMALIAGGRA 569 (631)
T ss_dssp SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCG-GGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCS
T ss_pred CCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCcc-ccccccccCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 4568999995532 1121 1234556788999999999999998641 00 012367799999999986543
Q ss_pred -hHHHHHHHHHHHhh
Q 027637 154 -LDKCEKGISFVKGN 167 (221)
Q Consensus 154 -~~~i~kGl~fL~~n 167 (221)
...++||++||.++
T Consensus 570 ~~~~i~rav~wL~~~ 584 (631)
T 2sqc_A 570 ESEAARRGVQYLVET 584 (631)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc
Confidence 35799999999873
No 10
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=96.59 E-value=0.0046 Score=61.12 Aligned_cols=83 Identities=19% Similarity=0.336 Sum_probs=54.4
Q ss_pred ccchhhhhhhhcccCCCCC---CC---CCchhHHHHHHHhcCCCCCCCCCCc------C--cchhHHhhhHHHHHHHHhh
Q 027637 85 STSAYDTAWVALIKDIDGN---DA---PQFPSCLQWIADNQLPDGSWGDDKI------F--LAHDRLINTLACIVALKSW 150 (221)
Q Consensus 85 S~SaYDTAWVAmVp~~~g~---~~---p~FP~~v~wLL~nQ~~DGsWG~~~~------~--~~~D~ll~TLAcvlAL~~w 150 (221)
.+..|.|+|+...=..-|. .. +.--..++||++.|.+||+||.... . ...-.+..|.-|++||..-
T Consensus 583 ~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~a 662 (732)
T 1w6k_A 583 VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAV 662 (732)
T ss_dssp SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 3568999994331111121 11 2344679999999999999996310 0 0011367899999999875
Q ss_pred c-CChHHHHHHHHHHHhh
Q 027637 151 N-IHLDKCEKGISFVKGN 167 (221)
Q Consensus 151 ~-~~~~~i~kGl~fL~~n 167 (221)
+ .....++||+.||.++
T Consensus 663 g~~~~~~i~r~v~wL~~~ 680 (732)
T 1w6k_A 663 RHPDIEAQERGVRCLLEK 680 (732)
T ss_dssp TCSCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 4 3445799999999874
No 11
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=96.46 E-value=0.0073 Score=56.56 Aligned_cols=62 Identities=18% Similarity=0.106 Sum_probs=45.8
Q ss_pred CCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHh
Q 027637 103 NDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNI-HLDKCEKGISFVKG 166 (221)
Q Consensus 103 ~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~kGl~fL~~ 166 (221)
...+.....++||++.|++||+||.... ..--...|.-||.||..-+. +...++|++.||-+
T Consensus 217 ~~~~~v~k~~~~L~s~Q~~DGGwg~~pg--~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~ 279 (437)
T 2h6f_B 217 ITPDLFEGTAEWIARCQNWEGGIGGVPG--MEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTS 279 (437)
T ss_dssp CCTTTTTTHHHHHHHHBCTTSSBCSSTT--SCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCCCCcCCCCC--CCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHh
Confidence 3446677899999999999999996521 12235778888888877542 23468999999875
No 12
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=96.44 E-value=0.0044 Score=55.78 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=44.7
Q ss_pred CCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhh
Q 027637 105 APQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNI-HLDKCEKGISFVKGN 167 (221)
Q Consensus 105 ~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~kGl~fL~~n 167 (221)
.+.....++||+..|.+||+||..... .--...|..|+.||.--+. +...++|+++||.+.
T Consensus 161 ~~~~~k~v~~L~s~Q~~dGGfg~~pg~--esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~ 222 (331)
T 3dss_B 161 AINVEKAIEFVLSCMNFDGGFGCRPGS--ESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCER 222 (331)
T ss_dssp GSCHHHHHHHHHTTBCTTSCBCSSTTC--CCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcCCCCcCCCCCC--CCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHh
Confidence 355788999999999999999965211 1125688888888876543 223589999999863
No 13
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=96.41 E-value=0.0055 Score=59.22 Aligned_cols=79 Identities=25% Similarity=0.229 Sum_probs=53.9
Q ss_pred cchhhhhhhhcccCCCC--CCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC--hHHHHHHH
Q 027637 86 TSAYDTAWVALIKDIDG--NDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH--LDKCEKGI 161 (221)
Q Consensus 86 ~SaYDTAWVAmVp~~~g--~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~--~~~i~kGl 161 (221)
+++.+||+|.+.=..-+ ...+.--.+++||+..|.+||||.+... ..-+-.|..++.||...+.. ...|+||+
T Consensus 444 ~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg---~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav 520 (631)
T 2sqc_A 444 PSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG---VNYLYGTGAVVSALKAVGIDTREPYIQKAL 520 (631)
T ss_dssp CBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB---SSHHHHHHHHHHHHHHTTCCTTSHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC---CCchHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 56778999555422112 1123345789999999999999944311 12345688899999886642 35799999
Q ss_pred HHHHhh
Q 027637 162 SFVKGN 167 (221)
Q Consensus 162 ~fL~~n 167 (221)
.||.+.
T Consensus 521 ~~L~s~ 526 (631)
T 2sqc_A 521 DWVEQH 526 (631)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999874
No 14
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=96.26 E-value=0.0033 Score=58.91 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=44.4
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC----hHHHHHHHHHHHhh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH----LDKCEKGISFVKGN 167 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~----~~~i~kGl~fL~~n 167 (221)
--..++||+..|.+||||+.... ..--|..|.+||.+|..-+.. ...++|++.||.+.
T Consensus 123 ~~r~v~~l~s~Q~~dGGf~g~~~--~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~ 184 (437)
T 2h6f_B 123 ATDVCQFLELCQSPEGGFGGGPG--QYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSL 184 (437)
T ss_dssp HHHHHHHHHHHBCTTSSBBSSTT--CCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCcCCccC--CCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHh
Confidence 34689999999999999987421 123477899999999886542 23589999999873
No 15
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=96.20 E-value=0.013 Score=57.91 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHhccCC------CCCcccchhhhh-hhhcccCCCC-CCCCCchhHHHHHHHhcCCCCCCCCCCcCcchh
Q 027637 64 EIKKLDHIIKSMLGSMD------GGEISTSAYDTA-WVALIKDIDG-NDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHD 135 (221)
Q Consensus 64 ~~~~lv~~ik~ll~~~~------~G~iS~SaYDTA-WVAmVp~~~g-~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D 135 (221)
.+.+.+++..+.+.++. .|+.+..+..|| .|-+.--.+. .....--+.++||.++|++||+||... ...-
T Consensus 72 ~~~~a~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~yl~~~Q~~DGgWgl~~--~~~s 149 (732)
T 1w6k_A 72 TAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHI--EDKS 149 (732)
T ss_dssp SHHHHHHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBT--TSCC
T ss_pred cHHHHHHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCCccCCc--CCCc
Confidence 34444444444444432 255555555554 4433211111 111344688999999999999999542 1234
Q ss_pred HHhhhHHHHHHHHhhcCChH--HHHHHHHHHHhh
Q 027637 136 RLINTLACIVALKSWNIHLD--KCEKGISFVKGN 167 (221)
Q Consensus 136 ~ll~TLAcvlAL~~w~~~~~--~i~kGl~fL~~n 167 (221)
.+..|.-+.+||+.-+..++ ++.||.+||.++
T Consensus 150 ~~~~T~~~Y~aLrl~G~~~~~~~~~~ar~~i~~~ 183 (732)
T 1w6k_A 150 TVFGTALNYVSLRILGVGPDDPDLVRARNILHKK 183 (732)
T ss_dssp BHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHc
Confidence 57778778999998766543 699999999874
No 16
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=96.19 E-value=0.0043 Score=55.83 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=44.6
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNI-HLDKCEKGISFVKGN 167 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~kGl~fL~~n 167 (221)
-.+.++||+.-|++||||+.... ..-.+..|.+||.+|..-+. ....++|+++||.+.
T Consensus 68 r~~~i~~l~s~Q~~dGGF~g~~g--~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~ 126 (331)
T 3dss_B 68 KEEILVFIKSCQHECGGVSASIG--HDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSL 126 (331)
T ss_dssp HHHHHHHHHHTBCTTSCBBSSTT--SCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCCCCcCCCCC--CCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhcc
Confidence 45889999999999999986421 12349999999999988542 122589999999874
No 17
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=96.08 E-value=0.026 Score=56.64 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=57.2
Q ss_pred CCcccchhhhhhhhcccC-C---CCCCCCCchhHHHHHH-HhcCCCCCCCCCCcCcc-----------hhHHhhhHHHHH
Q 027637 82 GEISTSAYDTAWVALIKD-I---DGNDAPQFPSCLQWIA-DNQLPDGSWGDDKIFLA-----------HDRLINTLACIV 145 (221)
Q Consensus 82 G~iS~SaYDTAWVAmVp~-~---~g~~~p~FP~~v~wLL-~nQ~~DGsWG~~~~~~~-----------~D~ll~TLAcvl 145 (221)
+...+|.|.||.|..+=. . ........-+.++||. +.|.+||+|........ ...+--|.-++.
T Consensus 322 ~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~ 401 (915)
T 2hr0_B 322 VKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLI 401 (915)
T ss_dssp SSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHH
T ss_pred CCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHH
Confidence 444689999999776421 1 1122244667889999 59999999975431100 123444566788
Q ss_pred HHHhhcC------C--hHHHHHHHHHHHhhhhh
Q 027637 146 ALKSWNI------H--LDKCEKGISFVKGNLSK 170 (221)
Q Consensus 146 AL~~w~~------~--~~~i~kGl~fL~~nl~~ 170 (221)
||..-+. . ...|.+|+.||.+++..
T Consensus 402 aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~ 434 (915)
T 2hr0_B 402 SLQEAKDICEEQVNSLPGSITKAGDFLEANYMN 434 (915)
T ss_dssp HHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHhcccccccCcccchHHHHHHHHHHHHhhhc
Confidence 8877521 1 23689999999987655
No 18
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=94.44 E-value=0.11 Score=47.82 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=43.1
Q ss_pred CCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCCh-H----HHHHHHHHHHh
Q 027637 100 IDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHL-D----KCEKGISFVKG 166 (221)
Q Consensus 100 ~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~-~----~i~kGl~fL~~ 166 (221)
++....+....+++||+.-|+.||+||...... --...|--||.||.--+..+ . .++|+++||.+
T Consensus 185 lg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~E--Sh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~ 254 (377)
T 1n4q_B 185 LNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLE--SHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254 (377)
T ss_dssp TTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSC--BCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHT
T ss_pred hcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCC--CchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHh
Confidence 333345667899999999999999999652211 12455666666665433211 1 68999999875
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=94.24 E-value=0.074 Score=47.75 Aligned_cols=58 Identities=12% Similarity=0.034 Sum_probs=40.2
Q ss_pred hhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhc----CChHHHHHHHHHHHhhh
Q 027637 109 PSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWN----IHLDKCEKGISFVKGNL 168 (221)
Q Consensus 109 P~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~----~~~~~i~kGl~fL~~nl 168 (221)
-..++||+.-|++|||||.-+. ...+.-+ |.-|+.+|.+.. +.+..|+||+.||.+..
T Consensus 94 ~~g~~~ll~~Q~~dGgf~~~~~-~~~~~~l-Ta~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q 155 (367)
T 1hzf_A 94 QKGYMRIQQFRKADGSYAAWLS-RDSSTWL-TAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQ 155 (367)
T ss_dssp HHHHHHHHTTBCTTSCBCSSTT-SCCCHHH-HHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGB
T ss_pred HHHHHHHHhccCCCCCeeccCC-CCCcHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 3568899999999999984321 0122222 777777776643 44568999999998743
No 20
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=93.89 E-value=0.085 Score=50.79 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=43.8
Q ss_pred hhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC-----hH--H--HHHHHHHHHhh
Q 027637 109 PSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH-----LD--K--CEKGISFVKGN 167 (221)
Q Consensus 109 P~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-----~~--~--i~kGl~fL~~n 167 (221)
-.+++||+.-|.+||++|........--|..|.|||.+|..-+.. -+ . ++++++||++.
T Consensus 112 ~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~sl 179 (520)
T 3q7a_B 112 DRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRC 179 (520)
T ss_dssp HHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHH
Confidence 468999999999999998653111234499999999999887642 12 3 67899999863
No 21
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=93.67 E-value=0.085 Score=48.44 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=36.8
Q ss_pred CchhHHHHHHHhcCCCCCCCCC--CcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhh
Q 027637 107 QFPSCLQWIADNQLPDGSWGDD--KIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGN 167 (221)
Q Consensus 107 ~FP~~v~wLL~nQ~~DGsWG~~--~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~n 167 (221)
--..+++||...|.+||||... .........-..++++-+|-.|+ ...++|+..||.+.
T Consensus 143 d~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~--~~~v~ka~~fL~sc 203 (377)
T 1n4q_B 143 DKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWS--GMDMKKAISYIRRS 203 (377)
T ss_dssp CHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGG--GSCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHh
Confidence 3468999999999999999763 11111222222333333333332 34699999999974
No 22
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=93.33 E-value=0.16 Score=43.23 Aligned_cols=55 Identities=5% Similarity=-0.159 Sum_probs=39.2
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhc----CChHHHHHHHHHHHh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWN----IHLDKCEKGISFVKG 166 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~----~~~~~i~kGl~fL~~ 166 (221)
..++|++.-|++||||+.-+. ...+ ..=|.-++.+|.... +.+..|+||+.||..
T Consensus 42 ~g~~~~l~~q~~dGgf~~f~~-~~~s-~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~ 100 (277)
T 1qqf_A 42 KGYTQQLAFKQPISAYAAFNN-RPPS-TWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLIL 100 (277)
T ss_dssp HHHHHHHTTBCTTSCBCSSTT-SCCC-HHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCccccCC-CCcc-HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 458889999999999984321 1122 223788888887754 445689999999985
No 23
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=93.07 E-value=0.18 Score=43.83 Aligned_cols=55 Identities=7% Similarity=-0.114 Sum_probs=39.5
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhc----CChHHHHHHHHHHHh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWN----IHLDKCEKGISFVKG 166 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~----~~~~~i~kGl~fL~~ 166 (221)
..++|++.-|++||||+.-+. ...+ ..=|.-++.+|.... +.+..|+||+.||..
T Consensus 58 ~g~~~~l~~q~~dGgf~~f~~-~~~s-~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~ 116 (310)
T 2wy7_A 58 KGYTQQLAFRQPSSAFAAFVK-RAPS-TWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLIL 116 (310)
T ss_dssp HHHHHHHTTBCTTSCBCSSTT-SCCC-HHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcccCCC-CCcc-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 458899999999999984321 1122 233788888887754 445689999999985
No 24
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=92.93 E-value=0.31 Score=50.51 Aligned_cols=89 Identities=20% Similarity=0.287 Sum_probs=53.6
Q ss_pred CCcccchhhhhhhhcc----cCCCC-CCCCCchhHHHHHHHhcCCCCCCCCCCcCc-------chhHHhhhHHHHHHHHh
Q 027637 82 GEISTSAYDTAWVALI----KDIDG-NDAPQFPSCLQWIADNQLPDGSWGDDKIFL-------AHDRLINTLACIVALKS 149 (221)
Q Consensus 82 G~iS~SaYDTAWVAmV----p~~~g-~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~-------~~D~ll~TLAcvlAL~~ 149 (221)
+...+|.|=||.|..+ .+... ......-++++||.+.|.+||+|-+..... ..+++.=|+-++.||..
T Consensus 895 ~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~ 974 (1325)
T 2pn5_A 895 ETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLE 974 (1325)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHT
T ss_pred CCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhh
Confidence 3456789999996543 22211 222345688999999999999996532100 01233334444567765
Q ss_pred hcC----ChHHHHHHHHHHHhhhhh
Q 027637 150 WNI----HLDKCEKGISFVKGNLSK 170 (221)
Q Consensus 150 w~~----~~~~i~kGl~fL~~nl~~ 170 (221)
-+. ....|+||+.||.++...
T Consensus 975 ~g~~~~~~~~~i~~a~~~L~~~~~~ 999 (1325)
T 2pn5_A 975 NDIAKAKHAEVIQKGMTYLSNQFGS 999 (1325)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHGGG
T ss_pred CcccccccHHHHHHHHHHHHHhhcc
Confidence 321 123689999999986543
No 25
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=92.82 E-value=0.083 Score=48.25 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=36.4
Q ss_pred CchhHHHHHHHhcCCCCCCCCCC----------cCcchhHHhhhHHHHHHHHhhc-----------------CChHHHHH
Q 027637 107 QFPSCLQWIADNQLPDGSWGDDK----------IFLAHDRLINTLACIVALKSWN-----------------IHLDKCEK 159 (221)
Q Consensus 107 ~FP~~v~wLL~nQ~~DGsWG~~~----------~~~~~D~ll~TLAcvlAL~~w~-----------------~~~~~i~k 159 (221)
-|-.+++|||.-|.++|+|+.-. +|.. |. |.-||..|..-. .....++|
T Consensus 98 Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnD-Dv---tarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~R 173 (332)
T 1gxm_A 98 AVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFND-NG---MAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTK 173 (332)
T ss_dssp HHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGG-GH---HHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCccccCCCcccccccCCcch-HH---HHHHHHHHHHHHhccCCccccccccchhhhhHHHHHH
Confidence 35578999999999999998431 1211 22 444555554431 11236999
Q ss_pred HHHHHHh
Q 027637 160 GISFVKG 166 (221)
Q Consensus 160 Gl~fL~~ 166 (221)
|+.||.+
T Consensus 174 gid~Llk 180 (332)
T 1gxm_A 174 GTDYILK 180 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 26
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=90.52 E-value=0.24 Score=46.39 Aligned_cols=20 Identities=20% Similarity=0.655 Sum_probs=17.8
Q ss_pred chhHHHHHHHhcCCCCCCCC
Q 027637 108 FPSCLQWIADNQLPDGSWGD 127 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~ 127 (221)
|-.+++|||.-|.+||+|+.
T Consensus 177 i~Rgl~wlL~mQ~~nGGWpq 196 (408)
T 1r76_A 177 ALKGIEYLLASQFPNGGWPQ 196 (408)
T ss_dssp HHHHHHHHHHHSCTTSCCBS
T ss_pred HHHHHHHHHHccCCCCCCcC
Confidence 55789999999999999984
No 27
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=90.49 E-value=0.33 Score=46.68 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=35.9
Q ss_pred hhHHHHHHHhcCCCCCCCCC-CcCcchhHHhhhHHHHHHHHhhcC-ChHHHHHHHHHHHhh
Q 027637 109 PSCLQWIADNQLPDGSWGDD-KIFLAHDRLINTLACIVALKSWNI-HLDKCEKGISFVKGN 167 (221)
Q Consensus 109 P~~v~wLL~nQ~~DGsWG~~-~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~kGl~fL~~n 167 (221)
..+++||...|.+||||... ..... +--|-.|+.+|.--+. .+..++|++.||.+.
T Consensus 170 ~k~v~fL~slQ~~DGSF~g~~wGe~D---ir~TY~Al~~L~lLg~~~~~~v~kav~fI~sc 227 (520)
T 3q7a_B 170 QSIYEFFMRCKRPDGGFVVCEGGEVD---VRGTYCLLVVATLLDIITPELLHNVDKFVSAC 227 (520)
T ss_dssp HHHHHHHHHHBCTTSCBBSSTTCCBC---HHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCEecCCCCCch---HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence 46889999999999999653 21111 3333333333333232 456799999999874
No 28
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=89.39 E-value=1.4 Score=42.81 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=55.0
Q ss_pred CCCcccchhhhhhhhcc----cCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCc---------C-cchhHHhhhHHHHHH
Q 027637 81 GGEISTSAYDTAWVALI----KDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKI---------F-LAHDRLINTLACIVA 146 (221)
Q Consensus 81 ~G~iS~SaYDTAWVAmV----p~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~---------~-~~~D~ll~TLAcvlA 146 (221)
+|....|.|=||.|+.+ ........-.--+.+.||+.+|.+||+|-..+. . ...+.+.-|.=.++|
T Consensus 390 w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvlia 469 (767)
T 4fxk_B 390 WLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIA 469 (767)
T ss_dssp SSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHH
T ss_pred CCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHH
Confidence 46667899999997653 222222212234678999999999999965421 0 112335455556788
Q ss_pred HHhhcC-------C------hHHHHHHHHHHHhhhh
Q 027637 147 LKSWNI-------H------LDKCEKGISFVKGNLS 169 (221)
Q Consensus 147 L~~w~~-------~------~~~i~kGl~fL~~nl~ 169 (221)
|..-.. . ...|.|++.||.+++.
T Consensus 470 L~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~ 505 (767)
T 4fxk_B 470 LHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKAS 505 (767)
T ss_dssp HHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhh
Confidence 865321 0 1248899999987653
No 29
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=88.77 E-value=1.3 Score=47.26 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=56.3
Q ss_pred CCCcccchhhhhhhhcc----cCCCCCCCCCchhHHHHHH-HhcCCCCCCCCCCc-Cc------chh----HHhhhHHHH
Q 027637 81 GGEISTSAYDTAWVALI----KDIDGNDAPQFPSCLQWIA-DNQLPDGSWGDDKI-FL------AHD----RLINTLACI 144 (221)
Q Consensus 81 ~G~iS~SaYDTAWVAmV----p~~~g~~~p~FP~~v~wLL-~nQ~~DGsWG~~~~-~~------~~D----~ll~TLAcv 144 (221)
+|....|.|=||+|+.+ ........-+.-+.++||. +.|.+||+|..... +. ..+ .+.-|.=++
T Consensus 1068 w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl 1147 (1661)
T 2b39_A 1068 FQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVL 1147 (1661)
T ss_dssp STTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHH
T ss_pred cCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHH
Confidence 34456899999997754 2222223344667889999 49999999975321 00 000 232344467
Q ss_pred HHHHhhcC--------ChHHHHHHHHHHHhhhhhh
Q 027637 145 VALKSWNI--------HLDKCEKGISFVKGNLSKL 171 (221)
Q Consensus 145 lAL~~w~~--------~~~~i~kGl~fL~~nl~~~ 171 (221)
+||..-+. ....|.+++.||.+++..+
T Consensus 1148 ~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~~ 1182 (1661)
T 2b39_A 1148 IALHEAKDICEAQVNSLGRSIAKAGDFLENHYREL 1182 (1661)
T ss_dssp HHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhccccccccCcchhHHHHHHHHHHHHhhhcc
Confidence 88876421 1236899999998876543
No 30
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=85.27 E-value=2 Score=45.69 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=55.8
Q ss_pred CCCcccchhhhhhhhcc----cCCCCCCCCCchhHHHHHHH-hcCCCCCCCCCCcC-c-----chh------HHhhhHHH
Q 027637 81 GGEISTSAYDTAWVALI----KDIDGNDAPQFPSCLQWIAD-NQLPDGSWGDDKIF-L-----AHD------RLINTLAC 143 (221)
Q Consensus 81 ~G~iS~SaYDTAWVAmV----p~~~g~~~p~FP~~v~wLL~-nQ~~DGsWG~~~~~-~-----~~D------~ll~TLAc 143 (221)
++..+.|.|=||+|+.+ ........-..-+.++||.+ .|.+||+|...... . ..+ .+.-|.=+
T Consensus 1069 w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyv 1148 (1676)
T 3cu7_A 1069 WKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFT 1148 (1676)
T ss_dssp SSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHH
Confidence 34557899999997664 22222233445678999999 89999999754210 0 011 23234445
Q ss_pred HHHHHhhcC------ChHHHHHHHHHHHhhhhh
Q 027637 144 IVALKSWNI------HLDKCEKGISFVKGNLSK 170 (221)
Q Consensus 144 vlAL~~w~~------~~~~i~kGl~fL~~nl~~ 170 (221)
++||..-+. ....|.+++.||.+++..
T Consensus 1149 l~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~ 1181 (1676)
T 3cu7_A 1149 VIGIRKAFDICPLVKIDTALIKADNFLLENTLP 1181 (1676)
T ss_dssp HHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcccccCCcccHHHHHHHHHHHHHhhhc
Confidence 777876421 123688999999887654
No 31
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=84.81 E-value=1.5 Score=45.39 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=40.1
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhc-----CChHHHHHHHHHHHhhh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWN-----IHLDKCEKGISFVKGNL 168 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~-----~~~~~i~kGl~fL~~nl 168 (221)
+.++||+.-|++|||||--.. ...+ ..-|+.++-+|.... +.+..+++|+.||.+..
T Consensus 876 ~g~~rll~~q~~dGgf~~f~~-~~~s-~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q 937 (1325)
T 2pn5_A 876 QGYQNQMRYRQTDGSFGLWET-TNGS-VFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQ 937 (1325)
T ss_dssp HHHHHHGGGBCTTSCBCSSSS-SCCC-HHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCCCCeeccCC-CCCC-eeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhh
Confidence 456688999999999984321 1122 233888888887752 45567999999998643
No 32
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=78.12 E-value=3.2 Score=41.50 Aligned_cols=55 Identities=7% Similarity=-0.066 Sum_probs=38.5
Q ss_pred hHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhc----CChHHHHHHHHHHHh
Q 027637 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWN----IHLDKCEKGISFVKG 166 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~----~~~~~i~kGl~fL~~ 166 (221)
..+++++.-|++||||+--+. ...+.-+ |.-++-.|.+.. +.+..+++|+.||.+
T Consensus 303 ~g~~rll~~Q~~DGsfs~w~~-~~~s~wl-TAyv~~~l~~a~~~~~v~~~~i~~al~~L~~ 361 (915)
T 2hr0_B 303 KGYTQQLAFRQPSSAFAAFVK-RAPSTWL-TAYVVKVFSLAVNLIAIDSQVLCGAVKWLIL 361 (915)
T ss_dssp HHHHHHGGGCCTTTCCBSSSS-SCBCHHH-HHHHHHHHHTTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCccccCC-CCCccee-hHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence 457789999999999984321 1123333 777777887754 445679999999985
No 33
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=77.98 E-value=2.8 Score=39.13 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=42.8
Q ss_pred CCchhHH----HHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCCh----HHHHHHHHHHHhhhh
Q 027637 106 PQFPSCL----QWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHL----DKCEKGISFVKGNLS 169 (221)
Q Consensus 106 p~FP~~v----~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~----~~i~kGl~fL~~nl~ 169 (221)
+.+...+ +||+..|.+||++|.. -+|.-||-||..-+..+ ..+.+++.+|.+++.
T Consensus 202 ~~i~~al~~l~~~l~~~Q~~dG~FGN~---------~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~q~~ 264 (414)
T 2bb6_A 202 NRINLALKRVQEKILKAQTPEGYFGNV---------YSTPLALQLLMGSLRPSVELGTACLKAKAALQASLQ 264 (414)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTSCBSST---------TTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCccch---------hhHHHHHHHHHhcCCCcccccchHHHHHHHHHHhcc
Confidence 4567777 8888889999999853 46888999998866432 368899999988654
No 34
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=76.28 E-value=2.6 Score=39.23 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=40.9
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCC--hH-HHHHHHHHHHhhhh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIH--LD-KCEKGISFVKGNLS 169 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~--~~-~i~kGl~fL~~nl~ 169 (221)
...-+++|+..|.+||++|+ +-+|.-||-||..-+.. .. .+.+++.+|.+++.
T Consensus 185 i~~~~~~l~~~q~~dG~fGn---------~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~q~~ 240 (399)
T 2pmv_A 185 LKDIVEKISMKIKDNGIIGD---------IYSTGLAMQALSVTPEPSKKEWNCKKTTDMILNEIK 240 (399)
T ss_dssp HHHHHHHHTTSBCTTSCBSS---------HHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCcccc---------cccHHHHHHHHHhcCCCccccccHHHHHHHHHHHhh
Confidence 34567788888999999985 67899999999986542 12 68889999887654
No 35
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=74.46 E-value=3.1 Score=41.86 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=60.0
Q ss_pred chhHHHH--HHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhhhhhhhccccccCcceeee
Q 027637 108 FPSCLQW--IADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEV 185 (221)
Q Consensus 108 FP~~v~w--LL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~~~~e~~~~~pvGFEI 185 (221)
|+..++| ++..|..|||=+.. -.+|+|++..- +. +++++||+.-+.+....++..-|+.. +
T Consensus 237 l~~~~d~~~~~~~q~~~GS~~~S--------PsaTAa~l~~~-----~d---~~~~~YL~~~~~~~~g~VP~~yP~d~-~ 299 (817)
T 3sdr_A 237 IQDIVEWERIMEVQSQDGSFLSS--------PASTACVFMHT-----GD---AKCLEFLNSVMIKFGNFVPCLYPVDL-L 299 (817)
T ss_dssp CTTTCCTTTGGGGCCTTSCBTTB--------HHHHHHHHHHH-----CC---HHHHHHHHHHHHHHSSCCCSSSCCHH-H
T ss_pred ccccccHHHHHhccCCCCCcccC--------HHHHHHHHHhC-----CC---hhHHHHHHHHHHhcCCCCCccCCCcH-H
Confidence 5667888 99999999997754 35788877652 11 67889999888887555555555531 2
Q ss_pred ehHHHHHHHHHCCCccCCCh---HHHHHHH
Q 027637 186 AFPSLLEIARSLDIEIPDHS---HVLQNIY 212 (221)
Q Consensus 186 ifPaLL~~a~~lgl~~p~~~---~~l~~i~ 212 (221)
--=.|++.++++||+--|.. .+|+.|+
T Consensus 300 e~l~lID~LqrLGi~~hF~~EI~~~L~~i~ 329 (817)
T 3sdr_A 300 ERLLIVDNIVRLGIYRHFEKEIKEALDYVY 329 (817)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 23467999999999855532 2355554
No 36
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=73.88 E-value=0.66 Score=49.87 Aligned_cols=90 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCcccchhhhhhhhcccC----CCC-CCCCCchhHHHHHHH-hcCCCCCCCCCCcCc----------chhHHhhhHHHHH
Q 027637 82 GEISTSAYDTAWVALIKD----IDG-NDAPQFPSCLQWIAD-NQLPDGSWGDDKIFL----------AHDRLINTLACIV 145 (221)
Q Consensus 82 G~iS~SaYDTAWVAmVp~----~~g-~~~p~FP~~v~wLL~-nQ~~DGsWG~~~~~~----------~~D~ll~TLAcvl 145 (221)
|.-..|.+=||+|+.+=. ... -+....-+.++||+. +|.+||+|.+.+... ..+.+.=|.=.++
T Consensus 1053 ~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vli 1132 (1642)
T 3prx_B 1053 TNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILV 1132 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHHH
Confidence 433578899999766422 111 233456688999997 799999997543100 0123445666788
Q ss_pred HHHhhcC--------ChHHHHHHHHHHHhhhhhh
Q 027637 146 ALKSWNI--------HLDKCEKGISFVKGNLSKL 171 (221)
Q Consensus 146 AL~~w~~--------~~~~i~kGl~fL~~nl~~~ 171 (221)
||..-+. ....|+||+.||++++..+
T Consensus 1133 aL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~~ 1166 (1642)
T 3prx_B 1133 ALLESKTICNDYVNSLDSSIKKATNYLLKKYEKL 1166 (1642)
T ss_dssp ----------------------------------
T ss_pred HHHhcccccccccccchHHHHHHHHHHHHhhhcC
Confidence 8887431 1236899999999887654
No 37
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=73.07 E-value=3 Score=41.72 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=60.1
Q ss_pred chhHHHH--HHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhhhhhhhccccccCcceeee
Q 027637 108 FPSCLQW--IADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEV 185 (221)
Q Consensus 108 FP~~v~w--LL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~~~~e~~~~~pvGFEI 185 (221)
|+..++| ++..|..|||=+.. -.+|+|++..- + -+++++||+.-+.+....++..-|+.. +
T Consensus 185 ~~~~~d~~~~~~~~~~~GS~~~S--------PsaTAa~l~~~-----~---d~~~~~YL~~~~~~~~g~VP~~yP~d~-~ 247 (764)
T 3p5p_A 185 LEEVIDWNKIMRFQSKDGSFLSS--------PASTACVLMNT-----G---DEKCFTFLNNLLDKFGGCVPCMYSIDL-L 247 (764)
T ss_dssp SGGGCCTTGGGGGBCTTSCBTTB--------HHHHHHHHHHH-----C---CHHHHHHHHHHHHHHTSCCCSSCCCHH-H
T ss_pred ccccccHHHHHhccCCCCCcccC--------hHHHHHHHHhC-----C---ChhHHHHHHHHHHhcCCCCCCcCCCcH-H
Confidence 5777889 99999999997754 35788887652 1 257889999888887555555445431 2
Q ss_pred ehHHHHHHHHHCCCccCCCh---HHHHHHH
Q 027637 186 AFPSLLEIARSLDIEIPDHS---HVLQNIY 212 (221)
Q Consensus 186 ifPaLL~~a~~lgl~~p~~~---~~l~~i~ 212 (221)
--=.|++.++++||+--|.. .+|+.|+
T Consensus 248 e~l~lID~LqrLGi~~hF~~EI~~~L~~i~ 277 (764)
T 3p5p_A 248 ERLSLVDNIEHLGIGRHFKQEIKGALDYVY 277 (764)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 23467899999999855533 2355554
No 38
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=71.10 E-value=5.2 Score=42.41 Aligned_cols=58 Identities=10% Similarity=0.023 Sum_probs=38.8
Q ss_pred hHHHHHHHhcCCCCCCCCCCc---CcchhHHhhhHHHHHHHHhh----cCChHHHHHHHHHHHhhh
Q 027637 110 SCLQWIADNQLPDGSWGDDKI---FLAHDRLINTLACIVALKSW----NIHLDKCEKGISFVKGNL 168 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~~~---~~~~D~ll~TLAcvlAL~~w----~~~~~~i~kGl~fL~~nl 168 (221)
+.++|++.-|++||||+--+. ....+.-+ |.-++-+|..- .+.+..+.+|+.||..+-
T Consensus 987 ~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wl-TAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q 1051 (1451)
T 4acq_A 987 TGYQRQLNYKHYDGSYSTFGERYGRNQGNTWL-TAFVLKTFAQARAYIFIDEAHITQALIWLSQRQ 1051 (1451)
T ss_dssp HHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHH-HHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTE
T ss_pred HHHHHHHhhcCCCCCeeeccCCCCCCCCchhH-HHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhc
Confidence 568999999999999883210 01122222 66666666643 355678999999999753
No 39
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=69.37 E-value=12 Score=34.67 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhccCC--CCCcccchhhhhh--hhcccC-CCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhh
Q 027637 65 IKKLDHIIKSMLGSMD--GGEISTSAYDTAW--VALIKD-IDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLIN 139 (221)
Q Consensus 65 ~~~lv~~ik~ll~~~~--~G~iS~SaYDTAW--VAmVp~-~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~ 139 (221)
+...+.+++..+.+.. +|.+ ..+|=||- =||.-. ......|-.+..++||+. |.+||+|+. ...
T Consensus 181 i~~ai~~~~~~l~~~q~~dG~f-Gn~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~n---------p~~ 249 (399)
T 2pmv_A 181 FGQVLKDIVEKISMKIKDNGII-GDIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFHN---------PMS 249 (399)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCB-SSHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTCS---------HHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcc-cccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcCC---------HHH
Confidence 4555666655544432 5665 47999998 233322 224557899999999999 999999984 356
Q ss_pred hHHHHHHHHh
Q 027637 140 TLACIVALKS 149 (221)
Q Consensus 140 TLAcvlAL~~ 149 (221)
|.-.+.||..
T Consensus 250 taQilPaL~~ 259 (399)
T 2pmv_A 250 IAQILPSLKG 259 (399)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 6677777765
No 40
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=68.60 E-value=11 Score=37.67 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=52.7
Q ss_pred hhHHHH--HHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhhhhhhhccccccCcceeeee
Q 027637 109 PSCLQW--IADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVA 186 (221)
Q Consensus 109 P~~v~w--LL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~~~~e~~~~~pvGFEIi 186 (221)
+..++| |+..|.+|||=+.. -.+|+|++.. +|+ +++++||+.-+.+....++..-|+.. +-
T Consensus 210 ~~~~d~~~v~~~q~~~GS~~~S--------PsaTAa~l~~--~~d------~~~~~YL~~~~~~~~g~VP~~yP~d~-~e 272 (785)
T 3s9v_A 210 QEIVDWQKIMKLQSKDGSFLSS--------PASTAAVFMR--TGN------KKCLDFLNFVLKKFGNHVPCHYPLDL-FE 272 (785)
T ss_dssp TTTCCHHHHHTTCCTTSCBTTB--------HHHHHHHHHH--HCC------HHHHHHHHHHHHHHSSCCCSSCCCHH-HH
T ss_pred cccccHHHHHhccCCCCCcccC--------HHHHHHHHHh--CCC------hhHHHHHHHHHHhcCCCCCCcCCCcH-HH
Confidence 444444 56889999997754 3578888764 343 67789999888887554544444431 22
Q ss_pred hHHHHHHHHHCCCccCC
Q 027637 187 FPSLLEIARSLDIEIPD 203 (221)
Q Consensus 187 fPaLL~~a~~lgl~~p~ 203 (221)
-=.|++.++++||+--|
T Consensus 273 ~l~lID~LqrLGi~~hF 289 (785)
T 3s9v_A 273 RLWAVDTVERLGIDRHF 289 (785)
T ss_dssp HHHHHHHHHHTTCGGGG
T ss_pred HHHHHHHHHHcCCcccc
Confidence 34678999999998555
No 41
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=65.67 E-value=6.3 Score=36.79 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=38.7
Q ss_pred CCchhHHHHHHHhcCC-CCCCC---CC---CcCc------c---hhHHhhhHHHHHHHHhhcCCh----HHHHHHHHHHH
Q 027637 106 PQFPSCLQWIADNQLP-DGSWG---DD---KIFL------A---HDRLINTLACIVALKSWNIHL----DKCEKGISFVK 165 (221)
Q Consensus 106 p~FP~~v~wLL~nQ~~-DGsWG---~~---~~~~------~---~D~ll~TLAcvlAL~~w~~~~----~~i~kGl~fL~ 165 (221)
+-+-..++||++.|-+ ||+|- .. ++.. . .-.=+.|...|+.|..-.... .+|++|+.||+
T Consensus 245 ~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~ 324 (408)
T 1r76_A 245 EATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLN 324 (408)
T ss_dssp HHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 5566789999999999 99984 11 1110 0 111223444566677755422 26999999998
Q ss_pred h
Q 027637 166 G 166 (221)
Q Consensus 166 ~ 166 (221)
+
T Consensus 325 s 325 (408)
T 1r76_A 325 T 325 (408)
T ss_dssp H
T ss_pred H
Confidence 7
No 42
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=65.36 E-value=3.5 Score=39.78 Aligned_cols=46 Identities=4% Similarity=0.012 Sum_probs=30.1
Q ss_pred ccceeccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHHhc
Q 027637 31 SRVVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLG 77 (221)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~ 77 (221)
.+.++.++++++.|.+++++. ...........+++.|++++|.|+.
T Consensus 19 ~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~ 64 (554)
T 3g4d_A 19 DEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIV 64 (554)
T ss_dssp ------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999988876 3222223456789999999999986
No 43
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=65.05 E-value=2.7 Score=40.50 Aligned_cols=71 Identities=15% Similarity=0.018 Sum_probs=15.1
Q ss_pred ccCcccccCCCcc-cccccccccchhcccceeccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHHhcc
Q 027637 5 HLSPLAFVTPESS-LSCNYHSTQIVYISRVVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGS 78 (221)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~~ 78 (221)
|--+|++.|+.-. =+|-..... ....++.++++++.|.+++..............++++.|.+++|.|+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~Vr~~~~~ 79 (569)
T 2j5c_A 8 HHHGMASMTGGQQMGRDLYDDDD---KDRWIRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQE 79 (569)
T ss_dssp ---------------------------------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred cccchhhcccccccCCCCCCCCc---ccccCCCCCCCCCcCCcccccCCCchhhhHHHHHHHHHHHHHHHHHHhc
Confidence 5568999988744 466664332 2445677899999999988876433221134578889999999998863
No 44
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=63.82 E-value=24 Score=32.82 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhc----cCC---CCCcccchhhhhhhhcccCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhH
Q 027637 64 EIKKLDHIIKSMLG----SMD---GGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDR 136 (221)
Q Consensus 64 ~~~~lv~~ik~ll~----~~~---~G~iS~SaYDTAWVAmVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ 136 (221)
.-.+|+.+++.-+. .++ .|.--.+.|..+|..|.=...|. ..-+..+.+|+..|..||.+-+.. ..
T Consensus 105 ~g~~Lv~~L~~~~~~e~~~~~~~~~~~p~tn~Yq~sL~vLALC~~g~--~v~~~~v~~Ll~~~~~~~~~~g~~-----~s 177 (414)
T 2bb6_A 105 KGDRLVSQLKRFLEDEKRAIGHNHQGHPRTSYYQYSLGILALCVHQK--RVHDSVVGKLLYAVEHKPHLLQDH-----VS 177 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSSCCCSSCHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHSSSCSCCTT-----TH
T ss_pred cchhHHHHHHHHHHHHHhhccccCCCCcccchHHHHHHHHHHHHcCC--CccHHHHHHHHHHhhccCcCCCCc-----cc
Confidence 55667777765443 222 35555688999994443233332 234578999999888776663221 24
Q ss_pred HhhhHHHHHHHHhhc---CC---hHHHHHHHHHHHhhhhhh
Q 027637 137 LINTLACIVALKSWN---IH---LDKCEKGISFVKGNLSKL 171 (221)
Q Consensus 137 ll~TLAcvlAL~~w~---~~---~~~i~kGl~fL~~nl~~~ 171 (221)
+=.|..+++||.--. .+ ...|.+++.++.+.|..-
T Consensus 178 VDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~ 218 (414)
T 2bb6_A 178 VDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKA 218 (414)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHh
Confidence 556777777777632 22 246999999999887654
No 45
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=56.43 E-value=10 Score=34.43 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=38.3
Q ss_pred hHHHHHHHhcCCCCCCCCC-Cc-----------CcchhHHhhhHHHHHHHHhhcC------ChHHHHHHHHHHHh
Q 027637 110 SCLQWIADNQLPDGSWGDD-KI-----------FLAHDRLINTLACIVALKSWNI------HLDKCEKGISFVKG 166 (221)
Q Consensus 110 ~~v~wLL~nQ~~DGsWG~~-~~-----------~~~~D~ll~TLAcvlAL~~w~~------~~~~i~kGl~fL~~ 166 (221)
..-+-|+..|+++|+|.-. +. ..+.| --.|...|.+|.+-.. -.++|.||+.||-.
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~D-nddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~ 108 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTID-NGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVN 108 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECG-GGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCcc-CccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 3478899999999999742 10 11111 3358899999988422 13579999999964
No 46
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=56.31 E-value=8.3 Score=37.11 Aligned_cols=45 Identities=13% Similarity=-0.044 Sum_probs=33.9
Q ss_pred ceeccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHHhc
Q 027637 33 VVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLG 77 (221)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~ 77 (221)
.++.++++++.|.+++++.............+++.|++++|.|+.
T Consensus 16 ~R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~ 60 (550)
T 3m00_A 16 VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLL 60 (550)
T ss_dssp CCCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 455678999999998888753322224456789999999999986
No 47
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics, unknown function; 1.54A {Thermotoga maritima} SCOP: d.58.5.2
Probab=56.08 E-value=5 Score=31.10 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=43.5
Q ss_pred cccccccccccchhhhhhhhhhhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhcccCCCCCCCCCchhHHHHHHHhcC
Q 027637 41 VRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQL 120 (221)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~~~~~G~iS~SaYDTAWVAmVp~~~g~~~p~FP~~v~wLL~nQ~ 120 (221)
.=.|...+.++..---...+..++.+++.+.||++-- ||+-=+-.+|-.+| .|.-++||.++-.
T Consensus 40 ~Y~W~G~ie~~~E~~l~iKT~~~~~~~l~~~I~~~Hp-----------YevPeIi~lpi~~g-----~~~Yl~Wi~~~t~ 103 (113)
T 1vhf_A 40 GYWWKGEIVQDKEWAAIFKTTEEKEKELYEELRKLHP-----------YETPAIFTLKVENV-----LTEYMNWLRESVL 103 (113)
T ss_dssp EEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHCS-----------SSSCCEEEEECSCC-----CHHHHHHHHHHC-
T ss_pred EEEECCEeeeCeEEEEEEEECHHHHHHHHHHHHHHCC-----------CcCCEEEEEEccCC-----CHHHHHHHHHHcC
Confidence 4467776665521111124557788888888887654 99977666765556 4799999999999
Q ss_pred CCCCC
Q 027637 121 PDGSW 125 (221)
Q Consensus 121 ~DGsW 125 (221)
+|||=
T Consensus 104 ~~~~~ 108 (113)
T 1vhf_A 104 EGGSH 108 (113)
T ss_dssp -----
T ss_pred CCCcc
Confidence 99874
No 48
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=53.04 E-value=32 Score=34.27 Aligned_cols=82 Identities=10% Similarity=0.097 Sum_probs=52.3
Q ss_pred HHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhhhhhhhccccccCcceeeeehHHHHHH
Q 027637 114 WIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEI 193 (221)
Q Consensus 114 wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl~~~~~e~~~~~pvGFEIifPaLL~~ 193 (221)
=++..|..|||=+.. -.+|+|++.. +|+ +++++||+.-+.+....++..-|+-. .--=.|++.
T Consensus 192 ~~~~~q~~~GS~~~S--------PsaTAa~l~~--~~d------~~~l~YL~~~v~k~~g~VP~~yP~d~-~e~L~lID~ 254 (727)
T 3pya_A 192 KLLKLQSQDGSFLFS--------PSSTAFAFMQ--TRD------SNCLEYLRNAVKRFNGGVPNVFPVDL-FEHIWIVDR 254 (727)
T ss_dssp HHGGGCCTTSSBTTB--------HHHHHHHHHH--HCC------HHHHHHHHHHHHHTTTCCCSSCCCHH-HHHHHHHHH
T ss_pred HHhcccCCCCCcccC--------HHHHHHHHhc--CCC------HHHHHHHHHHHHHcCCCCCCCCCCcH-HHHHHHHHH
Confidence 366678889987654 3578887764 332 57789999888876544444444431 222357899
Q ss_pred HHHCCCccCCCh---HHHHHHH
Q 027637 194 ARSLDIEIPDHS---HVLQNIY 212 (221)
Q Consensus 194 a~~lgl~~p~~~---~~l~~i~ 212 (221)
++++||+--|.. .+|+.|+
T Consensus 255 LqRLGIs~hFe~EI~~~L~~i~ 276 (727)
T 3pya_A 255 LQRLGISRYFEEEIKECLDYVH 276 (727)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHH
T ss_pred HHHcCCccccHHHHHHHHHHHH
Confidence 999999855532 3355554
No 49
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=43.92 E-value=15 Score=35.60 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=26.7
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSW 150 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w 150 (221)
=...+.||+++|+.+|+|+.. . .|.-|+.||...
T Consensus 603 a~~iv~WL~~Qr~~~Ggf~ST-----Q----dTv~AL~ALa~y 636 (767)
T 4fxk_B 603 ADQASAWLTRQGSFQGGFRST-----Q----DTVIALDALSAY 636 (767)
T ss_dssp HHHHHHHHHHTCCTTSSCSSH-----H----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCcCH-----H----HHHHHHHHHHHH
Confidence 346789999999999999864 3 477778888663
No 50
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=36.83 E-value=16 Score=35.18 Aligned_cols=45 Identities=7% Similarity=-0.016 Sum_probs=30.5
Q ss_pred eeccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHHhcc
Q 027637 34 VDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGS 78 (221)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~~ 78 (221)
+..++++++.|.+++++.............+++.|++++|.|+..
T Consensus 15 ~~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~ 59 (555)
T 3n0f_A 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINN 59 (555)
T ss_dssp --CCCCCCCTTCHHHHTCC-----CHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 445689999999988876432222234567899999999999863
No 51
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=34.14 E-value=65 Score=29.56 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=34.4
Q ss_pred CchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 027637 107 QFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKG 166 (221)
Q Consensus 107 ~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~ 166 (221)
....+++||++-|.-||+.|.......+-+- |--||-||.--+.-...+++-+++|..
T Consensus 192 d~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~--TfCalaaL~lL~~~~~d~~~l~~WL~~ 249 (390)
T 3dra_B 192 DLISLQQFILDRININGGFSSTIMDESHLGF--TFCAIASLKLLNYPLEKLKSTKEWLIH 249 (390)
T ss_dssp CHHHHHHHHHTTBCTTSCBCSSTTSCCCHHH--HHHHHHHHHHTTCCGGGCHHHHHHHHT
T ss_pred cHHHHHHHHHHhcCCCCCcCCCCCcccccch--hHHHHHHHHHhCcccccHHHHHHHHHH
Confidence 3578999999999999999954322223222 333333333322212356777777764
No 52
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown function; 1.39A {Xylella fastidiosa}
Probab=29.67 E-value=24 Score=27.40 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=44.5
Q ss_pred cccccccccccchhhhhhhhhhhhHHHHHHHHHHHhccCCCCCcccchhhhhhhhcccCCCCCCCCCchhHHHHHHHhcC
Q 027637 41 VRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQL 120 (221)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~~~~~G~iS~SaYDTAWVAmVp~~~g~~~p~FP~~v~wLL~nQ~ 120 (221)
.=.|...++++..---...+..++.+++.+.||++-- ||+-=+-.+|-.+| .|.-++||.++-.
T Consensus 43 ~Y~W~G~ie~~~E~~l~iKT~~~~~~~l~~~I~~~Hp-----------YevPeIi~lpi~~g-----~~~Yl~Wi~~~t~ 106 (118)
T 2nuh_A 43 TYRWQGKIETTQEIQLLIKTNAVHVNAAITRLCALHP-----------YRLPEAIAVQVSVG-----LPEYLTWINTEID 106 (118)
T ss_dssp EEESSSSEEEEEEEEEEEEEEGGGHHHHHHHHHHHCS-----------SSSCCCEEEECCCC-----CHHHHHHHHHHHC
T ss_pred EEEECCEeeeCeEEEEEEEECHHHHHHHHHHHHHHCC-----------CcCCEEEEEEccCC-----CHHHHHHHHHHcC
Confidence 4468776666521111124557888888888887655 99887766765556 4799999999988
Q ss_pred CCCCCC
Q 027637 121 PDGSWG 126 (221)
Q Consensus 121 ~DGsWG 126 (221)
.+|+-.
T Consensus 107 ~~~~~~ 112 (118)
T 2nuh_A 107 EEYSLP 112 (118)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 777643
No 53
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=28.89 E-value=41 Score=35.83 Aligned_cols=34 Identities=18% Similarity=0.462 Sum_probs=26.1
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSW 150 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w 150 (221)
-++.+.||+++|+.+|+|+.. -.|.-|+.||.+.
T Consensus 1267 ~~~iv~wL~~qr~~~Gg~~ST---------QdT~~Al~AL~~y 1300 (1676)
T 3cu7_A 1267 VNPVIKWLSEEQRYGGGFYST---------QDTINAIEGLTEY 1300 (1676)
T ss_dssp HHHHHHHHHHHSCSSSCCSTT---------TTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcccc---------HHHHHHHHHHHHH
Confidence 356689999999999999964 2455778888764
No 54
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=27.95 E-value=13 Score=25.79 Aligned_cols=15 Identities=33% Similarity=0.915 Sum_probs=11.2
Q ss_pred HHHHhcCCCCCCCCC
Q 027637 114 WIADNQLPDGSWGDD 128 (221)
Q Consensus 114 wLL~nQ~~DGsWG~~ 128 (221)
+|-..|++||+|--.
T Consensus 12 ~I~~s~RpDGT~RK~ 26 (58)
T 1rk8_C 12 FIPATKRPDGTWRKA 26 (58)
T ss_dssp EECCEECTTSCEECC
T ss_pred EcccccCCCCccccc
Confidence 345689999999643
No 55
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=24.96 E-value=39 Score=36.00 Aligned_cols=34 Identities=21% Similarity=0.593 Sum_probs=26.2
Q ss_pred chhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhh
Q 027637 108 FPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSW 150 (221)
Q Consensus 108 FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w 150 (221)
-.+.++||+++|..+|+|+.. . .|.-|+.||...
T Consensus 1248 ~~~iv~wL~~qr~~~gg~~ST-----q----dT~~Al~AL~~y 1281 (1661)
T 2b39_A 1248 TPPVVRWLNEQRYYGGGYGST-----Q----ATFMVFQALAQY 1281 (1661)
T ss_dssp SHHHHHHHHHCCTBTTBBCSH-----H----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCcccc-----h----HHHHHHHHHHHH
Confidence 356789999999999999963 2 456777888763
No 56
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=23.47 E-value=27 Score=33.18 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=45.2
Q ss_pred eccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHHhccCCCCCcccchhhhhh-hhcccCCC--CCCCCCchhH
Q 027637 35 DRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAW-VALIKDID--GNDAPQFPSC 111 (221)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~~~~~G~iS~SaYDTAW-VAmVp~~~--g~~~p~FP~~ 111 (221)
+.++++++.|.+++..............++++.|.+++|.|+... ...++.=| |=.+..++ -+-+..--++
T Consensus 3 ~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~V~~~~~~~------~d~~~~l~liD~lqrLGi~~hF~~EI~~~ 76 (543)
T 2ong_A 3 RSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKE------TDQIRQLELIDDLQRMGLSDHFQNEFKEI 76 (543)
T ss_dssp CCCCCCCCSSCHHHHHHCCCSSCSTHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHTTGGGTTHHHHHHH
T ss_pred CCCCCCCCcCCcccccCCCchhhhhHHHHHHHHHHHHHHHHHhcc------cCHHHHHHHHHHHHhCCchhhhHHHHHHH
Confidence 456899999998877653222211345788999999999988732 13455544 33333332 1211112346
Q ss_pred HHHHHHhc
Q 027637 112 LQWIADNQ 119 (221)
Q Consensus 112 v~wLL~nQ 119 (221)
+++|-++.
T Consensus 77 L~~i~~~~ 84 (543)
T 2ong_A 77 LSSIYLDH 84 (543)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 66665543
No 57
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=21.65 E-value=28 Score=33.15 Aligned_cols=46 Identities=7% Similarity=-0.086 Sum_probs=24.6
Q ss_pred ceeccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHHhcc
Q 027637 33 VVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGS 78 (221)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~~ 78 (221)
.++.++++++.|.+++..+...+.......++++.|.+++|.|+..
T Consensus 5 ~r~~~~~~ps~W~~~fl~s~~~~~~~~~~~~~~~~Lk~~V~~~~~~ 50 (549)
T 1n1b_A 5 IRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKE 50 (549)
T ss_dssp ----------CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCCCcccCCCcchhhhHHHHHHHHHHHHHHHHHhc
Confidence 4566789999999987754222211134578899999999998873
No 58
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=21.42 E-value=31 Score=31.72 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=34.7
Q ss_pred hHHHHHHHhcCCC----CCCCCCCcC---c---chhHHhhhHHHHHHHHhhcCCh-H--HHHHHHHHHHh
Q 027637 110 SCLQWIADNQLPD----GSWGDDKIF---L---AHDRLINTLACIVALKSWNIHL-D--KCEKGISFVKG 166 (221)
Q Consensus 110 ~~v~wLL~nQ~~D----GsWG~~~~~---~---~~D~ll~TLAcvlAL~~w~~~~-~--~i~kGl~fL~~ 166 (221)
+.++||...|.++ |+-++...+ . ..--|.+|++||++|.--+... + ..++=++||.+
T Consensus 57 ~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~ 126 (390)
T 3dra_B 57 YYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCK 126 (390)
T ss_dssp HHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHH
Confidence 5789999987764 666543100 0 1234999999999998743320 1 23445666654
Done!