BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027638
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39079|DNJ13_ARATH Chaperone protein dnaJ 13 OS=Arabidopsis thaliana GN=ATJ13 PE=1
SV=2
Length = 538
Score = 296 bits (759), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 143/218 (65%), Positives = 177/218 (81%), Gaps = 3/218 (1%)
Query: 1 MSAAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRLGSTALELEVGGGRKISEFSTIRML 60
+SAAG+ KI + GASA YT + S KSHGRI GR+GS ALE+E+GGGR+ISEFST+RM+
Sbjct: 273 VSAAGDFKIESGGLGASARYTRKLSSKSHGRIVGRIGSNALEIELGGGRQISEFSTVRMM 332
Query: 61 YSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYL 120
Y+VG++GIFWK ELHR QKL+VPILLS H + FATGAFI+P S+YFLLKKF++KPY L
Sbjct: 333 YTVGLKGIFWKVELHRGSQKLIVPILLSAHLAPVFATGAFIVPTSLYFLLKKFVVKPYLL 392
Query: 121 KREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGARK 180
KREKQKALENMEKT QV EA+A A+KAQQLLQ VA RK+N+Q+E GLI+TKA+YG K
Sbjct: 393 KREKQKALENMEKTWGQVGEARARAEKAQQLLQTVATRKKNRQVETDGLIVTKALYGDPK 452
Query: 181 ALTKLGETGESSDELASQVLDVTLPLNFLVNDSGRLKV 218
A+ + E E D S V+DVT+P+NFLV+DSG+LK+
Sbjct: 453 AIERRNEGVEGLD---SGVIDVTVPMNFLVSDSGQLKL 487
>sp|Q9NVH1|DJC11_HUMAN DnaJ homolog subfamily C member 11 OS=Homo sapiens GN=DNAJC11 PE=1
SV=2
Length = 559
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 18/214 (8%)
Query: 7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
L++G A Y H+F R++G L G +E G RKIS S + SVG
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVG 356
Query: 65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
+ QG+ K +L+RA Q PI L+ + F+AT + P VYF + + I+KP YL
Sbjct: 357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYAT---VGPLVVYFAMHRLIIKP-YL 412
Query: 121 KREKQKALENMEKTSA-QVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
+ +K+K LE +++A V + K A+ A +L+Q R + GLII A YG
Sbjct: 413 RAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472
Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
+ + S+++ +V+DVT+PL LV DS
Sbjct: 473 -----VNDKSRKSEKV--KVIDVTVPLQCLVKDS 499
>sp|Q5RC70|DJC11_PONAB DnaJ homolog subfamily C member 11 OS=Pongo abelii GN=DNAJC11 PE=2
SV=1
Length = 559
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 18/214 (8%)
Query: 7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
L++G A Y H+F R++G L G +E G RKIS S + S+G
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSIG 356
Query: 65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
+ QG+ K +L+RA Q PI L+ + F+AT + P VYF + + I+KP YL
Sbjct: 357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---MGPLVVYFAMHRLIIKP-YL 412
Query: 121 KREKQKALENMEKTSA-QVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
+ +K+K LE +++A V + K A+ A +L+Q R + GLII A YG
Sbjct: 413 RAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472
Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
+ + S+++ +V+DVT+PL LV DS
Sbjct: 473 -----VNDKSRKSEKV--KVIDVTVPLQCLVKDS 499
>sp|Q5U458|DJC11_MOUSE DnaJ homolog subfamily C member 11 OS=Mus musculus GN=Dnajc11 PE=2
SV=2
Length = 559
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 18/214 (8%)
Query: 7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
L++G A Y H+F R++G L G +E G RKIS S + S+G
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIG 356
Query: 65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
+ QG+ K +L+RA Q PI L+ + F+AT + P VY + + I++PY L
Sbjct: 357 VPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYAT---VGPLVVYLAVHRLIIRPY-L 412
Query: 121 KREKQKALENM-EKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
+ +K+K LE E T++ + + K A+ A +L+Q R + GLII A YG
Sbjct: 413 RAQKEKELEKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYG-- 470
Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
K + E +V+DVT+PL LV DS
Sbjct: 471 KFVNDKSRKNEK-----VKVIDVTVPLQCLVKDS 499
>sp|Q2NL21|DJC11_BOVIN DnaJ homolog subfamily C member 11 OS=Bos taurus GN=DNAJC11 PE=2
SV=1
Length = 559
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 18/214 (8%)
Query: 7 LKIGTSSFGASAHYTHRFSKKSHGRIQGRL--GSTALELEVGGGRKISEFSTIRMLYSVG 64
L++G A Y H+F R++G L G +E G RKIS S + S+G
Sbjct: 297 LQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSIG 356
Query: 65 I-QGIFWKFELHRAGQKLVVPILLSRHF---SSFFATGAFIIPASVYFLLKKFILKPYYL 120
+ QG+ K +L+RA Q PI L+ + F+AT P +YF L + +++P YL
Sbjct: 357 VPQGVSLKIKLNRASQTYFFPIHLTDQLLPSAVFYATAG---PLVLYFALHRLVIRP-YL 412
Query: 121 KREKQKALENM-EKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLEIGGLIITKAVYGAR 179
+ +K+K LE E T+ + + K A+ A +L+Q R + GLII A YG
Sbjct: 413 RAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKF 472
Query: 180 KALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
+S +V+DVT+PL LV DS
Sbjct: 473 V-------NDKSKKSEKVKVIDVTVPLQCLVKDS 499
>sp|Q54PV9|DJC11_DICDI DnaJ homolog subfamily C member 11 homolog OS=Dictyostelium
discoideum GN=dnajc11 PE=3 SV=1
Length = 575
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 45 VGGGRKISEFSTIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPA 104
+G RKI++ I + V + LH Q L +PI + S + F +PA
Sbjct: 352 IGFKRKITKVFDIDLSMHVNPSRYLYVIGLHHRYQSLEIPIPIYSDLSLSTSLLFFTLPA 411
Query: 105 SVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQL 164
LLK ++KP K+E++K +E EK + Q ++AK A+ L++ + K K+
Sbjct: 412 VTLSLLKYLVVKPLMKKKEQKKIMEKKEKYADQARKAKRKAEMDITLVKQLVENKVLKEK 471
Query: 165 EIGGLIITKAVYGARKALTKLGETGESSDELASQ---VLDVTLPLNFLVNDS 213
GLII +AVYG KL E + SD + + +DVT+PL +LV DS
Sbjct: 472 TKNGLIIQEAVYG------KLDEKVDHSDPFSVEFPPTIDVTIPLQYLVEDS 517
>sp|Q9Y7T0|YCJ3_SCHPO Uncharacterized J domain-containing protein C63.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC63.03 PE=3 SV=2
Length = 612
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 38 STALELEVGGG--RKISEFSTIRMLYSVGIQ--GIFWKFELHRAGQKLVVPILLSRHFSS 93
ST L+V G RK+ +ST + SVG+ I + R GQK+ +PI+ F
Sbjct: 384 STVGGLQVSGDTSRKVGRYSTFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDR 443
Query: 94 FFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQ 153
+ P + +++F L+P L +K+ L ++K + K +A +A +L++
Sbjct: 444 SAVFWGLVFPITSILGVEQFFLRPRRLSNQKRLRLLRLQKLKDSQERKKVSAIRAVKLMK 503
Query: 154 NVANRKRNKQLEIGGLIITKAVYGARKALTKLGETGESSDELASQVLDVTLPLNFLVNDS 213
+ +K+ ++E GGL+I A Y ++ G + +L DVT+ + LV +S
Sbjct: 504 EIVEKKQKLEMEKGGLVIEYAEY-------RVVNCGANEPDLKQ---DVTISIAALVENS 553
>sp|P15800|LAMB2_RAT Laminin subunit beta-2 OS=Rattus norvegicus GN=Lamb2 PE=2 SV=1
Length = 1801
Score = 34.3 bits (77), Expect = 0.74, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 119 YLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQ---NVANRKRNKQLEIGGLIITKAV 175
+ + E Q+AL ++V E + A++AQQ Q + AN R Q+E + + +
Sbjct: 1461 HTQAELQRALVEGGGILSRVSETRRQAEEAQQRAQAALDKANASRG-QVEQANQELRELI 1519
Query: 176 YGARKALTKLGETGESSDELASQVLDVTLP 205
+ L++ G +S + +A++VLD+++P
Sbjct: 1520 QNVKDFLSQEGADPDSIEMVATRVLDISIP 1549
>sp|Q61292|LAMB2_MOUSE Laminin subunit beta-2 OS=Mus musculus GN=Lamb2 PE=2 SV=2
Length = 1799
Score = 34.3 bits (77), Expect = 0.74, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 119 YLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQ---NVANRKRNKQLEIGGLIITKAV 175
+ + E Q+AL ++V E + A++AQQ Q + AN R Q+E + + +
Sbjct: 1459 HTQAELQRALVEGGGILSRVSETRRQAEEAQQRAQAALDKANASRG-QVEQANQELRELI 1517
Query: 176 YGARKALTKLGETGESSDELASQVLDVTLP 205
+ L++ G +S + +A++VLD+++P
Sbjct: 1518 QNVKDFLSQEGADPDSIEMVATRVLDISIP 1547
>sp|Q9ZMH1|CLPB_HELPJ Chaperone protein ClpB OS=Helicobacter pylori (strain J99) GN=clpB
PE=3 SV=1
Length = 856
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 86 LLSRHFSSFFATGAFIIPASVYFLLKKFILKPYYLKREKQKALENMEK 133
L+++ SF AT A+++ F + +LKPY +E QK LE++ K
Sbjct: 99 LMAKRGDSFIATDAYLLANMNLF---ESVLKPYLDTKELQKTLESLRK 143
>sp|O74842|FFT2_SCHPO ATP-dependent helicase fft2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fft2 PE=1 SV=1
Length = 1284
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 112 KFILKPYYLKREKQKALENMEKTSAQVQEAK------------AAAQKAQQLLQNVANRK 159
K ++ P+ L+R K + L ++ K + ++ K AA QK QQL ++ K
Sbjct: 767 KTMMTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNK 826
Query: 160 RNKQLE 165
R+K E
Sbjct: 827 RSKNDE 832
>sp|Q7VBZ5|SYL_PROMA Leucine--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=leuS PE=3 SV=1
Length = 870
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 80 KLVVPILLSRHFSSFFATGAFI-IPA---SVYFLLKKFILKPYYLKREKQKALENMEKTS 135
K ++PI + + S +ATGA + +PA Y KK+ L Y+ + + ++E +S
Sbjct: 332 KKIIPIWVGEYVLSSYATGAVMGVPAHDKRDYKFAKKYSLPIQYVIKSPSQEASDLEASS 391
Query: 136 AQVQEA 141
A V+E
Sbjct: 392 AYVKEG 397
>sp|E1B7X9|SMRCD_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Bos
taurus GN=SMARCAD1 PE=3 SV=2
Length = 1028
Score = 31.6 bits (70), Expect = 4.3, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 112 KFILKPYYLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANR 158
K I+KP+ L+R K++ L+ + ++ E A ++K +QL N+ NR
Sbjct: 714 KQIIKPFILRRVKEEVLKQLPPKKDRI-ELCAMSEKQEQLYMNLFNR 759
>sp|A1BEZ9|RNY_CHLPD Ribonuclease Y OS=Chlorobium phaeobacteroides (strain DSM 266)
GN=rny PE=3 SV=1
Length = 525
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 94 FFATGAFIIPASVYFLLKKFILKPYYLKR-EKQKALENMEKTSAQVQEAKAAAQKAQQL 151
FF + I+ ASV F + F L Y+L+R K LE E+ VQEA+ A + ++L
Sbjct: 4 FFISLVLIVLASVVFFVGGFFLGRYFLERIGTTKILEAEERAVQIVQEAQKEANEYKEL 62
>sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2
Length = 1798
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 119 YLKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQ---NVANRKRNKQLEIGGLIITKAV 175
+ + E Q+AL ++V E + A +AQQ Q + AN R Q+E + + +
Sbjct: 1458 HTQAELQRALAEGGSILSRVAETRRQASEAQQRAQAALDKANASRG-QVEQANQELQELI 1516
Query: 176 YGARKALTKLGETGESSDELASQVLDVTLP 205
+ L + G +S + +A++VL++++P
Sbjct: 1517 QSVKDFLNQEGADPDSIEMVATRVLELSIP 1546
>sp|Q04748|SOV1_YEAST Protein SOV1, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SOV1 PE=1 SV=1
Length = 898
Score = 30.8 bits (68), Expect = 8.3, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 92 SSFFATGAF-IIPASVYFLLKKFILKPYY---------LKREKQKALENMEKTSAQVQEA 141
S+F +G IPA + FL KKF L Y LKR+ + + N+ K + + +
Sbjct: 762 STFMKSGDLEAIPAILTFLTKKFDLNIDYDLSMYILKGLKRQYLRDISNISKDACEYKLR 821
Query: 142 KAAAQKAQQLLQNVANRKRNKQLEIGGLI 170
KA + +L+N+ + N++ I LI
Sbjct: 822 KAELMNNESILKNIP-QGTNQENTISHLI 849
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,839,073
Number of Sequences: 539616
Number of extensions: 2658558
Number of successful extensions: 10919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 10864
Number of HSP's gapped (non-prelim): 85
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)