Query 027638
Match_columns 221
No_of_seqs 123 out of 153
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 22:02:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rdd_B UPF0092 membrane protei 86.7 0.43 1.5E-05 28.9 2.4 24 99-122 4-28 (37)
2 4b4p_A FEDF, F18 fimbrial adhe 51.7 16 0.00055 27.4 4.0 62 20-81 35-120 (151)
3 3emn_X Voltage-dependent anion 49.6 1.2E+02 0.0042 25.9 10.0 55 3-60 190-248 (295)
4 1v54_I STA, cytochrome C oxida 46.7 23 0.00078 24.5 3.9 31 94-124 19-49 (73)
5 2g2n_A Transthyretin-like prot 44.9 13 0.00044 28.0 2.5 25 66-90 82-106 (114)
6 2h0e_A Transthyretin-like prot 42.7 15 0.00051 27.9 2.6 25 66-90 89-113 (121)
7 1f86_A Transthyretin Thr119Met 40.1 21 0.00071 26.8 3.0 25 66-90 80-105 (115)
8 1oo2_A Transthyretin; retinol- 38.2 22 0.00075 26.8 2.9 25 66-90 81-106 (119)
9 2h4e_A Transthyretin; amyloid, 36.7 25 0.00085 26.9 3.0 25 66-90 89-114 (127)
10 3iwv_A 5-hydroxyisourate hydro 35.6 17 0.00059 28.2 2.0 25 66-90 106-130 (138)
11 2aze_A Transcription factor DP 32.5 1.6E+02 0.0056 23.1 7.3 42 125-166 8-52 (155)
12 4efa_G V-type proton ATPase su 31.8 1.6E+02 0.0054 21.9 7.5 46 120-165 19-64 (119)
13 4ank_A Transthyretin; hormone 31.6 33 0.0011 26.8 3.0 25 66-90 109-134 (147)
14 3qva_A Transthyretin-like prot 30.7 21 0.00071 26.9 1.7 25 66-90 83-108 (116)
15 2ksd_A Aerobic respiration con 20.1 56 0.0019 24.5 2.3 22 90-111 54-75 (115)
No 1
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=86.65 E-value=0.43 Score=28.85 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=15.4
Q ss_pred HhHHHHHHH-HHHhhhhcchhhhHH
Q 027638 99 AFIIPASVY-FLLKKFILKPYYLKR 122 (221)
Q Consensus 99 a~v~P~~~y-~~~~~~v~~P~~r~~ 122 (221)
..++|+++. +++.++++||-++++
T Consensus 4 ~~~l~~v~~~~ifYFl~iRPQ~Kr~ 28 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRPQQKRT 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 456677765 445677889966553
No 2
>4b4p_A FEDF, F18 fimbrial adhesin AC; cell adhesion, fimbriae, bacterial adhesins, protein-carbohy interactions, ABH blood group binding, STEC; 1.80A {Escherichia coli k-12} PDB: 4b4q_A* 4b4r_A*
Probab=51.72 E-value=16 Score=27.39 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=44.4
Q ss_pred EEEecCCCceeeEEEEEcc-----ccceeEEeeeeeecc--------------ceeEEEEEEEee-----eeeEEEEEEE
Q 027638 20 YTHRFSKKSHGRIQGRLGS-----TALELEVGGGRKISE--------------FSTIRMLYSVGI-----QGIFWKFELH 75 (221)
Q Consensus 20 y~r~~~~~~~~r~~~~~gt-----~g~~~~~g~~rkvs~--------------~s~vg~~v~ig~-----~Gv~lk~~~~ 75 (221)
|.-+|...+...+.|.+|| +|-+-.|..+.|||- .|.+|++..+|- .|+.++++.-
T Consensus 35 ynvnfipsssgtltcqagtilvwkngretqyalecrvsihhssgsinesqwgqqsqvgfgtacgnkkcrftgfeislrip 114 (151)
T 4b4p_A 35 YNVNFIPSSSGTLTCQAGTILVWKNGRETQYALECRVSIHHSSGSINESQWGQQSQVGFGTACGNKKCRFTGFEISLRIP 114 (151)
T ss_dssp EEEEECCSSCEEEEEEECEEEEEETTEEEEEECEEEEEEEETTSCEEECCCBSEEEEEECSEETTEECCEEEEEEEEECC
T ss_pred eeeeeeecCCCcEEEccceEEEEeCCceeeEeEEEEEEEeecCCccChhHhcccccccceeccCCceeeeeeeEEEEEcC
Confidence 5555666777888889888 466666777766654 478898888886 2777777776
Q ss_pred EcceEE
Q 027638 76 RAGQKL 81 (221)
Q Consensus 76 R~gQ~~ 81 (221)
-..|+|
T Consensus 115 pnaqty 120 (151)
T 4b4p_A 115 PNAQTY 120 (151)
T ss_dssp GGGTTS
T ss_pred CCcccc
Confidence 666665
No 3
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=49.58 E-value=1.2e+02 Score=25.86 Aligned_cols=55 Identities=7% Similarity=0.039 Sum_probs=33.2
Q ss_pred eeEEEEEcccceeEEEEEEEecCCCceeeEEEEE----ccccceeEEeeeeeeccceeEEEE
Q 027638 3 AAGELKIGTSSFGASAHYTHRFSKKSHGRIQGRL----GSTALELEVGGGRKISEFSTIRML 60 (221)
Q Consensus 3 w~~~~~~g~~~~~is~~y~r~~~~~~~~r~~~~~----gt~g~~~~~g~~rkvs~~s~vg~~ 60 (221)
|.++++++- ...+.++|-+++.++ +.+++.+ ++....+++|+...+.+.+.+.+-
T Consensus 190 ~~~s~~l~~-~~~~~aSy~qkvs~~--~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKak 248 (295)
T 3emn_X 190 FQLHTNVND-GTEFGGSIYQKVNKK--LETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAK 248 (295)
T ss_dssp EEEEEEEET-TTEEEEEEEEECSSS--EEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEE
T ss_pred EEEEEEECC-CCeEEEEEEEECCCc--eEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEE
Confidence 667777764 457899999999874 3444443 333345666665555544443333
No 4
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=46.74 E-value=23 Score=24.53 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=24.6
Q ss_pred hhHHHHhHHHHHHHHHHhhhhcchhhhHHHH
Q 027638 94 FFATGAFIIPASVYFLLKKFILKPYYLKREK 124 (221)
Q Consensus 94 ~~~~~a~v~P~~~y~~~~~~v~~P~~r~~~~ 124 (221)
.-+..++++.+.+.+++++++..|+.++.+.
T Consensus 19 ~~i~~a~~lsl~~~~~~k~~v~~pRK~aYad 49 (73)
T 1v54_I 19 FHIVGAFMVSLGFATFYKFAVAEKRKKAYAD 49 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3466788899999999999999997766443
No 5
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=44.94 E-value=13 Score=27.96 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.1
Q ss_pred eeeEEEEEEEEcceEEEEEEEeccC
Q 027638 66 QGIFWKFELHRAGQKLVVPILLSRH 90 (221)
Q Consensus 66 ~Gv~lk~~~~R~gQ~~~~PI~Ls~~ 90 (221)
+=|.+.|..+..+|.|-+|++|||-
T Consensus 82 p~V~i~F~i~d~~~HYHVPLLlSP~ 106 (114)
T 2g2n_A 82 PEIPVEFHINKVNEHYHVPLLLSQY 106 (114)
T ss_dssp SCEEEEEEESSTTSCEEEEEEEETT
T ss_pred ceEEEEEEECCCCCCeEEeEEecCC
Confidence 4688899999889999999999983
No 6
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=42.68 E-value=15 Score=27.89 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.3
Q ss_pred eeeEEEEEEEEcceEEEEEEEeccC
Q 027638 66 QGIFWKFELHRAGQKLVVPILLSRH 90 (221)
Q Consensus 66 ~Gv~lk~~~~R~gQ~~~~PI~Ls~~ 90 (221)
+=|.+.|..+..+|.|-+|++|||-
T Consensus 89 p~V~i~F~i~d~~~HYHVPLLlSP~ 113 (121)
T 2h0e_A 89 TIVTVRFQLADPDAHYHIPLLLSPF 113 (121)
T ss_dssp SSEEEEEEECCTTSEEECCEEEETT
T ss_pred ceEEEEEEECCCCCCeEEeEEecCC
Confidence 4688899999999999999999983
No 7
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=40.14 E-value=21 Score=26.79 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=21.5
Q ss_pred eeeEEEEEEEEc-ceEEEEEEEeccC
Q 027638 66 QGIFWKFELHRA-GQKLVVPILLSRH 90 (221)
Q Consensus 66 ~Gv~lk~~~~R~-gQ~~~~PI~Ls~~ 90 (221)
+=|.+.|..... .|.|-+|++|||-
T Consensus 80 p~V~i~F~i~d~~~~HYHVPLLlSP~ 105 (115)
T 1f86_A 80 EHAEVVFTANDSGPRRYTIAALLSPY 105 (115)
T ss_dssp EEEEEEEEESTTSCCEEEEEEEEETT
T ss_pred ceEEEEEEECCCCCCCEEEeEEecCC
Confidence 467888888888 5999999999993
No 8
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=38.21 E-value=22 Score=26.84 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.6
Q ss_pred eeeEEEEEEEEc-ceEEEEEEEeccC
Q 027638 66 QGIFWKFELHRA-GQKLVVPILLSRH 90 (221)
Q Consensus 66 ~Gv~lk~~~~R~-gQ~~~~PI~Ls~~ 90 (221)
+=|.+.|..+.. .|.|-+|++|||-
T Consensus 81 p~V~i~F~i~d~~~~HYHVPLLlSP~ 106 (119)
T 1oo2_A 81 EVAEVVFDAHPEGHGHYTLALLLSPF 106 (119)
T ss_dssp EEEEEEEEECCSSSCCEEEEEEEETT
T ss_pred ceEEEEEEECCCCCCCEEEeEEecCC
Confidence 468888999888 5999999999993
No 9
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=36.74 E-value=25 Score=26.86 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=21.4
Q ss_pred eeeEEEEEEEEc-ceEEEEEEEeccC
Q 027638 66 QGIFWKFELHRA-GQKLVVPILLSRH 90 (221)
Q Consensus 66 ~Gv~lk~~~~R~-gQ~~~~PI~Ls~~ 90 (221)
+=|.+.|..+.. .|-|-+|++|||-
T Consensus 89 p~V~I~F~i~d~~~~HYHVPLLlSP~ 114 (127)
T 2h4e_A 89 EHAEVVFTANDSGPRRYTIAALLSPY 114 (127)
T ss_dssp EEEEEEEEESTTSCCEEEEEEEEETT
T ss_pred ceEEEEEEECCCCCCCEEEeEEecCC
Confidence 468888888888 5999999999993
No 10
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=35.61 E-value=17 Score=28.18 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.0
Q ss_pred eeeEEEEEEEEcceEEEEEEEeccC
Q 027638 66 QGIFWKFELHRAGQKLVVPILLSRH 90 (221)
Q Consensus 66 ~Gv~lk~~~~R~gQ~~~~PI~Ls~~ 90 (221)
+-|.+.|..+..+|.|-||++|||-
T Consensus 106 p~V~V~F~i~d~~~HYHVPLLlSP~ 130 (138)
T 3iwv_A 106 PYVEIVFTITNTSQHYHVPLLLSRF 130 (138)
T ss_dssp SCEEEEEEECCTTSCEECCEEEETT
T ss_pred eeeEEEEEECCCCCCeEEeEEecCC
Confidence 3588899999999999999999983
No 11
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=32.53 E-value=1.6e+02 Score=23.06 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=27.1
Q ss_pred HHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Q 027638 125 QKALENMEKTSAQVQEAKA---AAQKAQQLLQNVANRKRNKQLEI 166 (221)
Q Consensus 125 ~~~~~~r~~~~~~i~~~R~---eA~~a~~Lm~~~a~r~~~~E~~k 166 (221)
++.++.+.+..++|.++++ |=..++.-++..++|+++.|.+.
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~~ 52 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQA 52 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455556666666644 33345666788999999998764
No 12
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=31.83 E-value=1.6e+02 Score=21.95 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027638 120 LKREKQKALENMEKTSAQVQEAKAAAQKAQQLLQNVANRKRNKQLE 165 (221)
Q Consensus 120 r~~~~~~~~~~r~~~~~~i~~~R~eA~~a~~Lm~~~a~r~~~~E~~ 165 (221)
.++......+.|+....++..+|.||...|+-.+..-++.-++.+.
T Consensus 19 Ek~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~ 64 (119)
T 4efa_G 19 EKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQ 64 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777778889999999999999998888776655433
No 13
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=31.58 E-value=33 Score=26.80 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=20.3
Q ss_pred eeeEEEEEEEEcc-eEEEEEEEeccC
Q 027638 66 QGIFWKFELHRAG-QKLVVPILLSRH 90 (221)
Q Consensus 66 ~Gv~lk~~~~R~g-Q~~~~PI~Ls~~ 90 (221)
+-|.+.|..+..+ |.|-||++|||.
T Consensus 109 p~V~V~F~i~d~~~~HYHVPLLlSP~ 134 (147)
T 4ank_A 109 EHAEVVFTANDSGPRRYTIAALLSPY 134 (147)
T ss_dssp EEEEEEEEESTTSCCEEEEEEEEETT
T ss_pred cceEEEEEEECCCCCceeEeEEEcCC
Confidence 3577888888765 789999999994
No 14
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=30.74 E-value=21 Score=26.91 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=18.0
Q ss_pred eeeEEEEEEEEc-ceEEEEEEEeccC
Q 027638 66 QGIFWKFELHRA-GQKLVVPILLSRH 90 (221)
Q Consensus 66 ~Gv~lk~~~~R~-gQ~~~~PI~Ls~~ 90 (221)
+-|.+.|..+.. +|.|-+|++|||-
T Consensus 83 p~V~v~F~i~d~~~~HYHVPLLlSP~ 108 (116)
T 3qva_A 83 TRAQIDFVIGEAAEDHFHLPFLIAPG 108 (116)
T ss_dssp EEEEEEEEC-----CCEECCEEEETT
T ss_pred eeEEEEEEeCCCCCCCEEEeEEecCC
Confidence 457788888887 9999999999983
No 15
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=20.09 E-value=56 Score=24.54 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=17.8
Q ss_pred CCChhhHHHHhHHHHHHHHHHh
Q 027638 90 HFSSFFATGAFIIPASVYFLLK 111 (221)
Q Consensus 90 ~~~~~~~~~a~v~P~~~y~~~~ 111 (221)
++.....|...+.||++|+...
T Consensus 54 Di~rsI~Fgli~aP~viYFls~ 75 (115)
T 2ksd_A 54 DVIRSIFFGLLITPWAVYFLSV 75 (115)
T ss_dssp SCCSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555789999999999999753
Done!