Query 027638
Match_columns 221
No_of_seqs 123 out of 153
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 22:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027638.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027638hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2azea1 e.63.1.1 (A:199-346) T 51.5 27 0.0019 25.6 7.3 42 125-166 5-49 (148)
2 d1f86a_ b.3.4.1 (A:) Transthyr 40.0 9.8 0.00071 26.6 3.0 25 66-90 80-105 (115)
3 d1oo2a_ b.3.4.1 (A:) Transthyr 39.6 9 0.00066 26.9 2.8 25 66-90 81-106 (116)
4 d1v54i_ f.23.3.1 (I:) Mitochon 22.2 50 0.0037 21.1 3.9 28 95-122 20-47 (73)
5 d2oara1 f.16.1.1 (A:10-118) Ga 15.1 40 0.0029 23.1 2.2 26 96-121 62-88 (109)
6 d3brda1 b.1.18.1 (A:542-660) D 13.0 41 0.003 23.6 1.8 14 200-214 93-106 (119)
7 d1bf5a2 b.2.5.5 (A:317-568) ST 10.2 1.4E+02 0.01 23.3 4.3 46 56-107 116-161 (252)
8 d1wpua1 d.275.1.1 (A:5-148) Hu 9.0 1.3E+02 0.0093 21.5 3.4 22 41-62 121-142 (144)
9 d1bg1a2 b.2.5.5 (A:322-575) ST 8.6 1.7E+02 0.012 22.7 4.3 47 56-108 117-163 (254)
10 d1r9fa_ d.255.1.1 (A:) Tombusv 8.0 1.2E+02 0.0087 20.7 2.7 19 54-72 81-99 (124)
No 1
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.51 E-value=27 Score=25.58 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=27.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhc
Q 027638 125 QKALENMEKTSAQVQEAKAAAQK---AQQLLQNVANRKRNKQLEI 166 (221)
Q Consensus 125 ~~~~~~r~~~~~~i~~~R~eA~~---a~~Lm~~~a~r~~~~E~~k 166 (221)
++.++.+++..++|.+++++-.+ ++.-++..++|+++.|...
T Consensus 5 ~~Le~E~~~~~erI~~K~~~LqeLi~Q~iafknLV~RN~~~e~~~ 49 (148)
T d2azea1 5 QNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQA 49 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 34455556666666666554433 4556788899999888754
No 2
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.98 E-value=9.8 Score=26.61 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=20.4
Q ss_pred eeeEEEEEEEEcc-eEEEEEEEeccC
Q 027638 66 QGIFWKFELHRAG-QKLVVPILLSRH 90 (221)
Q Consensus 66 ~Gv~lk~~~~R~g-Q~~~~PI~Ls~~ 90 (221)
+-|.+.|.....+ +.|-||++|+|.
T Consensus 80 p~v~i~F~v~d~~~~hYHiPlllsP~ 105 (115)
T d1f86a_ 80 EHAEVVFTANDSGPRRYTIAALLSPY 105 (115)
T ss_dssp EEEEEEEEESTTSCCEEEEEEEEETT
T ss_pred ceEEEEEEecCCCCCceeEeEEEcCC
Confidence 4577888887664 789999999994
No 3
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]}
Probab=39.60 E-value=9 Score=26.91 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.6
Q ss_pred eeeEEEEEEE-EcceEEEEEEEeccC
Q 027638 66 QGIFWKFELH-RAGQKLVVPILLSRH 90 (221)
Q Consensus 66 ~Gv~lk~~~~-R~gQ~~~~PI~Ls~~ 90 (221)
+-|.+.|... ...+.|-||++|+|.
T Consensus 81 p~V~i~F~i~~d~~~hYHvPlllSP~ 106 (116)
T d1oo2a_ 81 EVAEVVFDAHPEGHGHYTLALLLSPF 106 (116)
T ss_dssp EEEEEEEEECCSSSCCEEEEEEEETT
T ss_pred cceEEEEEECCCCCCCeeEEEEEcCC
Confidence 3577888885 678999999999994
No 4
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.20 E-value=50 Score=21.14 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=22.3
Q ss_pred hHHHHhHHHHHHHHHHhhhhcchhhhHH
Q 027638 95 FATGAFIIPASVYFLLKKFILKPYYLKR 122 (221)
Q Consensus 95 ~~~~a~v~P~~~y~~~~~~v~~P~~r~~ 122 (221)
-+..++++.+.+-++.|+++-+|+.+..
T Consensus 20 hl~~a~~lsl~~a~~~Kf~v~eprKkaY 47 (73)
T d1v54i_ 20 HIVGAFMVSLGFATFYKFAVAEKRKKAY 47 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccHhHHHH
Confidence 4567888888888899999999976553
No 5
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.12 E-value=40 Score=23.10 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=14.6
Q ss_pred HHHHhHHHHHHHHH-HhhhhcchhhhH
Q 027638 96 ATGAFIIPASVYFL-LKKFILKPYYLK 121 (221)
Q Consensus 96 ~~~a~v~P~~~y~~-~~~~v~~P~~r~ 121 (221)
.|...++=++..++ +.+++++|+.+-
T Consensus 62 ~fi~a~InFlIiA~vv~F~vvk~~n~~ 88 (109)
T d2oara1 62 VLLSAAINFFLIAFAVYFLVVLPYNTL 88 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554 334466887654
No 6
>d3brda1 b.1.18.1 (A:542-660) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=13.01 E-value=41 Score=23.59 Aligned_cols=14 Identities=50% Similarity=0.774 Sum_probs=11.1
Q ss_pred EEeeeeeeeeeecCC
Q 027638 200 LDVTLPLNFLVNDSG 214 (221)
Q Consensus 200 iDVTIplq~lV~dSg 214 (221)
-||++|+ .||+|+|
T Consensus 93 ~~v~vPi-sLVR~DG 106 (119)
T d3brda1 93 GDVEVPI-SLVRDDG 106 (119)
T ss_dssp CCBEEEE-EEEETTS
T ss_pred CcceeeE-EEEecCC
Confidence 4789998 5888886
No 7
>d1bf5a2 b.2.5.5 (A:317-568) STAT-1, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.16 E-value=1.4e+02 Score=23.30 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=32.0
Q ss_pred eEEEEEEEeeeeeEEEEEEEEcceEEEEEEEeccCCChhhHHHHhHHHHHHH
Q 027638 56 TIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVY 107 (221)
Q Consensus 56 ~vg~~v~ig~~Gv~lk~~~~R~gQ~~~~PI~Ls~~~~~~~~~~a~v~P~~~y 107 (221)
.+.+...+.+.|+...+. ++++||.+--+.+-..-.||+|+=.=++
T Consensus 116 ~l~F~t~~~~~~l~~~l~------t~SLPvVVIvhgnQ~~~AwATIlWdNaf 161 (252)
T d1bf5a2 116 SLSFETQLCQPGLVIDLE------TTSLPVVVISNVSQLPSGWASILWYNML 161 (252)
T ss_dssp CEEEEEEEEETTEEEEEE------EECSCBEEESSGGGHHHHHHHHHHHHHH
T ss_pred eeEeEEEEeeCCEEEEEE------EcccCEEEEECCCcccchhhhheehhhh
Confidence 556665666667544443 8999999988877777888887654443
No 8
>d1wpua1 d.275.1.1 (A:5-148) Hut operon positive regulatory protein HutP {Bacillus subtilis [TaxId: 1423]}
Probab=8.96 E-value=1.3e+02 Score=21.53 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=17.3
Q ss_pred ceeEEeeeeeeccceeEEEEEE
Q 027638 41 LELEVGGGRKISEFSTIRMLYS 62 (221)
Q Consensus 41 ~~~~~g~~rkvs~~s~vg~~v~ 62 (221)
+.-++|+--+.++|.++|++++
T Consensus 121 lyG~~sa~~~~~eHEr~GLGim 142 (144)
T d1wpua1 121 LYGTIGAPIKGLEHETFGVGIN 142 (144)
T ss_dssp EEEEEESSSTTSEEEEEEEEEE
T ss_pred EecccCCcccCccceeeccccc
Confidence 3444677889999999999975
No 9
>d1bg1a2 b.2.5.5 (A:322-575) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.63 E-value=1.7e+02 Score=22.73 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=32.4
Q ss_pred eEEEEEEEeeeeeEEEEEEEEcceEEEEEEEeccCCChhhHHHHhHHHHHHHH
Q 027638 56 TIRMLYSVGIQGIFWKFELHRAGQKLVVPILLSRHFSSFFATGAFIIPASVYF 108 (221)
Q Consensus 56 ~vg~~v~ig~~Gv~lk~~~~R~gQ~~~~PI~Ls~~~~~~~~~~a~v~P~~~y~ 108 (221)
.+-+...+.+.|+.+.+ +++++||++-.+-+-..-.||+|+=.=+++
T Consensus 117 ~l~F~t~~~~~~l~~~l------~tlSLPvVVIvhgnQ~~~AwATIlWdNafs 163 (254)
T d1bg1a2 117 LITFETEVYHQGLKIDL------ETHSLPVVVISNICQMPNAWASILWYNMLT 163 (254)
T ss_dssp CEEEEEEEEETTEEEEE------EEECSCBEEESSGGGHHHHHHHHHHHHHHC
T ss_pred eeEEEEEEeeCCEEEEE------EEccCCEEEEeCCCcCcCceeEeeEccccc
Confidence 45566556666754443 378999999888888888888876444433
No 10
>d1r9fa_ d.255.1.1 (A:) Tombusvirus P19 core protein, VP19 {Tomato bushy stunt virus, TBSV [TaxId: 12145]}
Probab=8.04 E-value=1.2e+02 Score=20.67 Aligned_cols=19 Identities=26% Similarity=0.495 Sum_probs=15.9
Q ss_pred ceeEEEEEEEeeeeeEEEE
Q 027638 54 FSTIRMLYSVGIQGIFWKF 72 (221)
Q Consensus 54 ~s~vg~~v~ig~~Gv~lk~ 72 (221)
+..+|+.++|-+.|+.+.+
T Consensus 81 ~~QigCTYSIRfRG~s~Tl 99 (124)
T d1r9fa_ 81 FDQIGCTYSIRFRGVSITV 99 (124)
T ss_dssp SSCCEEEEEEEETTEEEEE
T ss_pred ccccceeEEEEEeeEEEEE
Confidence 5789999999999887654
Done!