BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027641
         (220 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O49286|SKP2B_ARATH F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1
          Length = 360

 Score = 32.7 bits (73), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 119 ISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAA---------- 168
           +S+ LTRL+ S   + M  L L L   F  +QTL++++ +   QLE  A           
Sbjct: 62  VSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKP--QLEDNAVEAIANHCHEL 119

Query: 169 --AEKERNENIQNQPLYSKRQ---KLQKMNFSDKTDISASILSN 207
              +  ++  I +  LYS  +    L K+N S  T  S + L++
Sbjct: 120 QDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAH 163


>sp|P18593|VIRD3_AGRT5 Protein virD3 OS=Agrobacterium tumefaciens (strain C58 / ATCC
           33970) GN=virD3 PE=4 SV=2
          Length = 673

 Score = 32.3 bits (72), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 19/113 (16%)

Query: 76  EFIDYVVASIKSEDVKLILEGHSN----------------ADGAAYAKIVAQKSKGMPRI 119
           +F D+  A +   D   ++E HSN                AD     + V ++++ MP  
Sbjct: 415 DFPDFTEAELAKIDA--LVESHSNRSLSVRNIVPDLRGAGADNVFRKEGVVERAEKMPID 472

Query: 120 SISLTRLTGS-AATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEK 171
           S+SLTRL G  + +   ++ SLE F          ++E ER  +   E   +K
Sbjct: 473 SVSLTRLNGERSRSPKTSQASLEDFPDLTDADLAHIEESERIARTAVEKGKQK 525


>sp|Q65JE5|MIAB_BACLD (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
           GN=miaB PE=3 SV=1
          Length = 509

 Score = 31.2 bits (69), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 17/135 (12%)

Query: 62  DDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISI 121
           D + + +  GG+  + I   V S  S+ +KL+   +   D   Y ++VA+  K MP  S+
Sbjct: 308 DHLIEVLAKGGNLLDHIHLPVQSGSSDVLKLMARKY---DRERYLELVAKIKKAMPNASL 364

Query: 122 SLTRLTG-SAATEAMAKLSLELF--TAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQ 178
           +   + G    T+   + +L L+    F S  T I   +E        AA  K+      
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGT-----PAAKMKD------ 413

Query: 179 NQPLYSKRQKLQKMN 193
           N P+  K+++LQ++N
Sbjct: 414 NVPMRVKKERLQRLN 428


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.129    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,945,247
Number of Sequences: 539616
Number of extensions: 2672621
Number of successful extensions: 8590
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 8565
Number of HSP's gapped (non-prelim): 47
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)