Query 027641
Match_columns 220
No_of_seqs 25 out of 27
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 22:08:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mud_A DNA repair protein XRCC 94.5 0.33 1.1E-05 41.0 10.4 131 38-193 33-173 (175)
2 1ik9_A DNA repair protein XRCC 94.5 0.85 2.9E-05 38.8 13.1 63 24-89 14-78 (213)
3 3w03_C DNA repair protein XRCC 94.2 2.2 7.6E-05 36.0 14.9 130 22-161 32-172 (184)
4 3q4f_C DNA repair protein XRCC 86.6 7.8 0.00027 33.1 10.9 129 24-162 43-182 (186)
5 2y3w_A SAS6, spindle assembly 61.8 37 0.0013 27.9 8.2 99 39-137 46-158 (182)
6 3q0x_A Centriole protein; cent 52.3 59 0.002 28.1 8.1 110 24-136 43-170 (228)
7 2z5i_A TM, general control pro 40.5 21 0.00073 24.2 2.8 39 151-193 12-50 (52)
8 2llh_A Nucleophosmin; nucleola 40.7 8.4 0.00029 28.6 0.0 34 55-88 21-59 (74)
9 1r8s_E ARNO; protein transport 33.1 12 0.0004 31.6 0.7 54 40-95 143-199 (203)
10 2y3v_A SAS6, spindle assembly 32.5 1.2E+02 0.0041 24.3 6.5 95 39-136 46-157 (159)
11 3qbe_A 3-dehydroquinate syntha 28.8 44 0.0015 30.0 3.7 75 41-126 46-140 (368)
12 2zet_C Melanophilin; complex, 28.8 87 0.003 25.1 5.1 57 115-180 7-63 (153)
13 1ku1_A ARF guanine-nucleotide 27.3 18 0.00062 31.0 0.9 55 40-95 169-225 (230)
14 3fwb_B Nuclear mRNA export pro 25.9 1.2E+02 0.004 21.0 4.7 19 132-150 8-26 (55)
15 1yel_A AT1G16640; CESG, protei 23.3 37 0.0013 24.6 1.8 47 41-95 41-87 (104)
16 1vlj_A NADH-dependent butanol 23.2 18 0.00063 32.0 0.2 19 114-132 142-160 (407)
17 1v5r_A Growth-arrest-specific 22.4 16 0.00055 28.3 -0.3 20 66-85 56-75 (97)
18 2x4k_A 4-oxalocrotonate tautom 22.3 1.1E+02 0.0037 18.8 3.7 31 115-148 2-32 (63)
19 1v8h_A Sulfur oxidation protei 21.0 55 0.0019 24.7 2.4 41 16-58 63-104 (107)
20 1vf6_C Maguk P55 subfamily mem 20.7 86 0.0029 23.1 3.3 31 141-171 18-50 (72)
21 3t98_A Nuclear pore complex pr 20.6 1.8E+02 0.0061 19.9 4.7 30 147-176 21-50 (51)
22 3ltl_A Brefeldin A-inhibited g 20.2 33 0.0011 29.1 1.1 50 40-92 151-204 (211)
No 1
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=94.53 E-value=0.33 Score=40.97 Aligned_cols=131 Identities=18% Similarity=0.291 Sum_probs=91.0
Q ss_pred CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccc-----ccceEeecCCCCCCCcchheeeeec
Q 027641 38 SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKS-----EDVKLILEGHSNADGAAYAKIVAQK 112 (220)
Q Consensus 38 ~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS-----~~VkL~l~~~s~s~G~~~akLVA~K 112 (220)
+.+.|..||-| ++|....|-+++..+-|++|- --..|++-++-.|-+ ++-++.|.+. .-..-=.|
T Consensus 33 ~gf~i~ltDG~-saW~g~Vs~~~i~~eA~~~~m--e~e~Yv~el~kAl~~~~~~~~~~~f~~s~e-------~~~~syek 102 (175)
T 3mud_A 33 SGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSKE-------SCYFFFEK 102 (175)
T ss_dssp GEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHTTCCCTTCCEEEEECTT-------TCEEEEEE
T ss_pred cceEEEEeCCc-ceeeeeeCHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEecChh-------HHHHHHHH
Confidence 66899999999 579999999999999998876 467899999999933 4788888653 22222223
Q ss_pred cCCCCeeEEec-----ccccchhHHHHHHHhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHH
Q 027641 113 SKGMPRISISL-----TRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQ 187 (220)
Q Consensus 113 aKGmPrItI~L-----~kl~~saa~D~ma~lsl~lf~a~rs~~~~~~~eqe~~s~L~~~L~sEkekne~iq~q~~~s~~q 187 (220)
. +.-++..| ..+...| ++|-.|.- -+.| ...+=|..+.+|+..|..||+++..||.+ .-|
T Consensus 103 ~--lk~vsfrLGs~~Lk~a~~pa--E~ireli~---~Aer----tV~kLqkeiD~LEDeL~~eKek~k~i~~e----LDq 167 (175)
T 3mud_A 103 N--LKDVSFRLGSFNLEKVENPA--EVIRELIC---YCLD----TTAKNEKSIDDLEEKVAHAKEENLNMHQM----LDQ 167 (175)
T ss_dssp E--CSSCEEEEEEEECEECSCHH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred H--HHHHHHHhcccccccCCChH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 2 34455555 7777765 34443321 1222 23344678899999999999999999877 125
Q ss_pred HhhhhC
Q 027641 188 KLQKMN 193 (220)
Q Consensus 188 Klqk~n 193 (220)
=|..+|
T Consensus 168 Tl~eL~ 173 (175)
T 3mud_A 168 TLLELN 173 (175)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555544
No 2
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=94.51 E-value=0.85 Score=38.80 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=49.8
Q ss_pred CccceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccccc
Q 027641 24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSED 89 (220)
Q Consensus 24 ~~~pfLFh~~a~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~ 89 (220)
+-..++.|+...+. .+++|++||-+ +.|.++.+-+++...-+. -+++..+|++-+...|..++
T Consensus 14 ~~~~~~l~~~w~~~~~~~f~l~~TdG~-~~w~g~v~~~~i~~rAk~--~~~~~eey~~~l~~aL~~~~ 78 (213)
T 1ik9_A 14 PSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADD--MAMEKGKYVGELRKALLSGA 78 (213)
T ss_dssp EEEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHH--TTCCHHHHHHHHHHHHCC--
T ss_pred CCCeEEEEEEEcCCCCCceEEEEecCC-CceEEEecHHHHHHHHHh--cCCCHHHHHHHHHHHHhCCC
Confidence 33567778887653 78999999985 789999999999854444 57899999999999998883
No 3
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=94.22 E-value=2.2 Score=36.05 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=83.9
Q ss_pred CCCccceEEEEeC-CC-CCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccc-----eEee
Q 027641 22 SDSLGRFLFHVSA-PD-SSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDV-----KLIL 94 (220)
Q Consensus 22 s~~~~pfLFh~~a-~d-s~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~V-----kL~l 94 (220)
|-+-.|.+..+.= .| .+...|.+||-+ ++|.+..|-+++..+-+++| =.-++|++-|+.+|-+++- ++-+
T Consensus 32 s~p~~~yflk~~W~~~l~sgF~L~LTDG~-sAW~G~vSe~~I~~~A~~~~--m~~e~Yv~eL~kAl~~~~~~~~~Y~f~~ 108 (184)
T 3w03_C 32 SEPSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMA--MEKGKYVGELRKALLSGAGPADVYTFNF 108 (184)
T ss_dssp TCTTSCEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTT--CCHHHHHHHHHHHHSSCCCSSCCEEEEE
T ss_pred CCCCceEEEEEEeccCCCCceEEEEECCC-ceeeEEcCHHHHHHHHHHhC--CCHHHHHHHHHHHHhCCCCCCceEEEec
Confidence 4445566666654 33 367999999999 78999999999999888865 4788999999999965443 5555
Q ss_pred cCCCCCCCcchheeeeecc-CCCCe--eEEecccccchhHH-HHHHHhhHHHHHHHHHhhHhHHHHHHHHH
Q 027641 95 EGHSNADGAAYAKIVAQKS-KGMPR--ISISLTRLTGSAAT-EAMAKLSLELFTAFRSMQTLIVQEQERCL 161 (220)
Q Consensus 95 ~~~s~s~G~~~akLVA~Ka-KGmPr--ItI~L~kl~~saa~-D~ma~lsl~lf~a~rs~~~~~~~eqe~~s 161 (220)
.+ ...++.--|. +++-. =+++|.++.+.+-. --|-+++++-+..++..-.++.+|-+|..
T Consensus 109 s~-------e~~~fs~eK~l~di~frLGSv~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~ 172 (184)
T 3w03_C 109 SK-------ESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLL 172 (184)
T ss_dssp CT-------TTCEEEEEEEETTEEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-------cceEEEeeeccCceEEEEeeeeeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2355544444 33321 24788888875522 33555666666655554444444444433
No 4
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=86.64 E-value=7.8 Score=33.11 Aligned_cols=129 Identities=15% Similarity=0.227 Sum_probs=89.4
Q ss_pred CccceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhc-----ccccceEeecC
Q 027641 24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI-----KSEDVKLILEG 96 (220)
Q Consensus 24 ~~~pfLFh~~a~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~asl-----sS~~VkL~l~~ 96 (220)
+..+.+..+.--.. +.+.|..||-| ++|.+..|-+++..+-|++|- --..|++-|+-+| ..++-++.|.+
T Consensus 43 p~~~yfLqvsW~~~lgsGF~i~LTDGq-SaW~G~VS~~~Is~eAd~m~M--e~e~YV~eL~KALv~~~~~~~~y~F~~S~ 119 (186)
T 3q4f_C 43 PSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSK 119 (186)
T ss_dssp EEEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEECT
T ss_pred CCccEEEEEEeccCCCcceEEEEeCCc-ceeeeEECHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEEecc
Confidence 34445555554443 67999999999 579999999999999999876 4678999999999 56688888875
Q ss_pred CCCCCCcchheeeeecc-CCC--CeeEEecccccchhH-HHHHHHhhHHHHHHHHHhhHhHHHHHHHHHH
Q 027641 97 HSNADGAAYAKIVAQKS-KGM--PRISISLTRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQ 162 (220)
Q Consensus 97 ~s~s~G~~~akLVA~Ka-KGm--PrItI~L~kl~~saa-~D~ma~lsl~lf~a~rs~~~~~~~eqe~~s~ 162 (220)
. +..+.=.|. |++ .+=++.|.++..-+. ..=|-+.+|.=-..++..-+++.+|-+|.++
T Consensus 120 e-------~~~Fs~eK~LkdvsF~LGSv~L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 120 E-------SCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp T-------TCEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------eeEEEEEEEecCcEEEEeeEEeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 445554444 443 344667777777543 3334445666666666666666666666554
No 5
>2y3w_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.98A {Danio rerio}
Probab=61.82 E-value=37 Score=27.86 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=66.7
Q ss_pred CeEEEEeccccc--chhhccccchhhhhHhhhcCCCChHHHHHHHHH----hccc---ccceEeecCCCCC---CC-cch
Q 027641 39 HLLIQVTDFRSN--TWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVA----SIKS---EDVKLILEGHSNA---DG-AAY 105 (220)
Q Consensus 39 hL~v~vTDfHSn--tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~a----slsS---~~VkL~l~~~s~s---~G-~~~ 105 (220)
.|+|.+||==.- -....++-++-+.||.+=++==.|.+|...|.. |.++ ...++++.-..++ +| ...
T Consensus 46 ~l~ieLTdd~D~fFlY~~~i~e~dF~~lK~eQ~L~VdF~~Fp~~li~lL~~c~~~~~~~~~~f~~~l~~~~~~~d~~~~~ 125 (182)
T 2y3w_A 46 DLVVRLTDDTDLYFLYNLIISEEDFQSLKVQQGLLIDFTSFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFDHSPSN 125 (182)
T ss_dssp EEEEEEEETTEEEEEEEEEEEHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHTTSSSCSEEEEEEECCCSSSCCCEE
T ss_pred EEEEEECcCCCCcEEEEEEeCHHHHHHHHHHcCeeeeHHHhHHHHHHHHHHHhccccccCceEEEEEeeccccCCCCeEE
Confidence 399999982111 145678889999999999999999999777654 4443 4455555432222 34 223
Q ss_pred heeeeecc-CCCCeeEEecccccchhHHHHHHH
Q 027641 106 AKIVAQKS-KGMPRISISLTRLTGSAATEAMAK 137 (220)
Q Consensus 106 akLVA~Ka-KGmPrItI~L~kl~~saa~D~ma~ 137 (220)
-.+|-.-. |=+..+++++....+.+...-++.
T Consensus 126 L~~vE~~~FK~l~hLsL~f~~a~d~~ik~yLa~ 158 (182)
T 2y3w_A 126 LNIVETNADKHLTHLSLKLLPGSDTDIKKYLAS 158 (182)
T ss_dssp EEEEEEETTEEEEEEEEEEEECCHHHHHHHHHH
T ss_pred EEEEEeCCCcEEEEEEEEeecCCHHHHHHHHHH
Confidence 33343333 789999999999988777766663
No 6
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=52.31 E-value=59 Score=28.07 Aligned_cols=110 Identities=17% Similarity=0.265 Sum_probs=73.9
Q ss_pred CccceEEEEeC------CCCCCeEEEEeccccc--chhhccccchhhhhHhhhcCCCChHHHHHHHHH----hcccc---
Q 027641 24 SLGRFLFHVSA------PDSSHLLIQVTDFRSN--TWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVA----SIKSE--- 88 (220)
Q Consensus 24 ~~~pfLFh~~a------~ds~hL~v~vTDfHSn--tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~a----slsS~--- 88 (220)
...|.-++|.. .....|+|.+||==.- -+...++-++-+.|+.+=++==.|.+|.+.|.. |.+..
T Consensus 43 ~~e~i~vkIl~~~~g~~~~~~~lrIeLTdd~D~FFLY~~~i~e~dF~~LK~eQ~L~VDF~~FP~~lI~LL~~Ci~~~~~~ 122 (228)
T 3q0x_A 43 VLEELTFRILTGVAKQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDQGILVDFASFPGKIISLLEKCILAQPGD 122 (228)
T ss_dssp EEEEEEEEEEEEECSSCTTCEEEEEEEECSSCTTCEEEEEEETTTHHHHHHTTTCCSCTTTHHHHHHHHHHHHHHCCTTC
T ss_pred ceeeEEEEEEEeccCCCCCccEEEEEECcCCCCceeEEEEeCHHHHHHHHHHcCeeeeHHHHHHHHHHHHHHHhcccccC
Confidence 35677777754 1234688999982111 156788889999999999999999999877665 44432
Q ss_pred c--ceEeecCCCCCCCcchheeeeecc-CCCCeeEEecccccchhHHHHHH
Q 027641 89 D--VKLILEGHSNADGAAYAKIVAQKS-KGMPRISISLTRLTGSAATEAMA 136 (220)
Q Consensus 89 ~--VkL~l~~~s~s~G~~~akLVA~Ka-KGmPrItI~L~kl~~saa~D~ma 136 (220)
. ..++|.. .+|...-.+|=+-. |=+..+++++....+.....-++
T Consensus 123 ~~~f~avL~~---~~g~a~L~fVE~~eFK~l~hLSL~f~~asde~Ik~yLa 170 (228)
T 3q0x_A 123 SPRFQAVLTI---RGGESVFKIVEINDEKQLPHITLAFRPGNDSVVKQFLA 170 (228)
T ss_dssp SSEEEEEEEE---CSSCEEEEEEEEETTEEEEEEEEEEEECCHHHHHHHHH
T ss_pred CCcEEEEEEe---cCCceEEEEEEccCcceEEEEEEEeecCCHHHHHHHHH
Confidence 2 3334543 23544444554444 78999999999888866665555
No 7
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=40.52 E-value=21 Score=24.20 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHhhhhC
Q 027641 151 TLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMN 193 (220)
Q Consensus 151 ~~~~~eqe~~s~L~~~L~sEkekne~iq~q~~~s~~qKlqk~n 193 (220)
.++.+=|..+.+|+..|.+||+|+..|+.. ..|=|+.++
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~e----LD~tl~el~ 50 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEE----LDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHh
Confidence 345566788999999999999999998876 335555443
No 8
>2llh_A Nucleophosmin; nucleolar, chaperone, oncoprotein, DNA binding protein; NMR {Homo sapiens} PDB: 2vxd_A
Probab=40.68 E-value=8.4 Score=28.64 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=25.6
Q ss_pred ccccchhh-hhHhhhcCCCChHH----HHHHHHHhcccc
Q 027641 55 KRSVLQLD-DMRDEIGIGGSWSE----FIDYVVASIKSE 88 (220)
Q Consensus 55 slSv~~Le-DlRD~VGIGGSwsd----F~dYl~aslsS~ 88 (220)
..||+++- -|+-.|.=|||.+- |.+|+.+||.=-
T Consensus 21 pssvedIKaKmqasieKg~slPKvE~KF~NyvKn~F~mt 59 (74)
T 2llh_A 21 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMT 59 (74)
Confidence 34555554 45668888999987 999999999743
No 9
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=33.08 E-value=12 Score=31.59 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=39.3
Q ss_pred eEEEEecccccchhhccccchhhhhHhhhcC--CCChH-HHHHHHHHhcccccceEeec
Q 027641 40 LLIQVTDFRSNTWEAKRSVLQLDDMRDEIGI--GGSWS-EFIDYVVASIKSEDVKLILE 95 (220)
Q Consensus 40 L~v~vTDfHSntW~~slSv~~LeDlRD~VGI--GGSws-dF~dYl~aslsS~~VkL~l~ 95 (220)
|.++=||+|+-.-...+|.++- +|.--|| |+.++ ||+.++..++++...++.-+
T Consensus 143 iImLNTDlHn~~vk~kMt~~~F--i~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d 199 (203)
T 1r8s_E 143 VIMLNTDLHNPNVRDKMGLERF--VAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPED 199 (203)
T ss_dssp HHHHHHHHHCTTCCSCCCHHHH--HHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC
T ss_pred HHHhcccccCcccccccCHHHH--HHHhhcccCCCCCCHHHHHHHHHHHHhCCCCCccC
Confidence 3445599998777778887765 3444466 55565 99999999999999886543
No 10
>2y3v_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.92A {Danio rerio}
Probab=32.46 E-value=1.2e+02 Score=24.32 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=66.2
Q ss_pred CeEEEEec-----ccccchhhccccchhhhhHhhhcCCCChHHHHHHHHH----hccc---ccceEeecCCCCC---CC-
Q 027641 39 HLLIQVTD-----FRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVA----SIKS---EDVKLILEGHSNA---DG- 102 (220)
Q Consensus 39 hL~v~vTD-----fHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~a----slsS---~~VkL~l~~~s~s---~G- 102 (220)
.|+|.+|| || +...++-++-+.||.+=++==.|.+|...|.. |.++ ...++++.-..++ +|
T Consensus 46 ~l~ieLT~~~D~fFl---Y~~~i~e~dF~~lK~eQ~L~VdF~~Fp~~li~lL~~c~~~~~~~~~~f~~~l~~~~~~~d~~ 122 (159)
T 2y3v_A 46 DLVVRLTDDTDLYFL---YNLIISEEDFQSLKVQQGLLIDFTSFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFDHS 122 (159)
T ss_dssp EEEEEEEETTEEEEE---EEEEECHHHHHHHHHHHTCCSCGGGHHHHHHHHHHHHHHHTTSSSCSEEEEEECSSCTTSCC
T ss_pred EEEEEECcCCCCcEE---EEEEeCHHHHHHHHHhcceeeeHHHhHHHHHHHHHHHHcccccCCcEEEEEEeecccccCCC
Confidence 39999998 44 45678888999999999999999999777654 4443 3456555432221 34
Q ss_pred cchheeeeecc-CCCCeeEEecccccchhHHHHHH
Q 027641 103 AAYAKIVAQKS-KGMPRISISLTRLTGSAATEAMA 136 (220)
Q Consensus 103 ~~~akLVA~Ka-KGmPrItI~L~kl~~saa~D~ma 136 (220)
...-.+|=+-. |=+..+++++....+.+...-+|
T Consensus 123 ~~~L~~vE~~eFK~l~hLsL~f~~a~d~~ik~yLa 157 (159)
T 2y3v_A 123 PSNLNIVETNAFKHLTHLSLKLLPGSDTDIKKYLA 157 (159)
T ss_dssp CEEEEEEECCSSCCEEEEEEEEEECCHHHHHHHHT
T ss_pred cEEEEEEEcCCccEEEEEEEEeecCCHHHHHHHhh
Confidence 23334444433 88999999999988877665554
No 11
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=28.85 E-value=44 Score=29.99 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=44.9
Q ss_pred EEEEecccccchhhccccchhhhhHhhhcC--------CC----ChHHHHHHHHHhcc-----cccceEeecCCCCCCCc
Q 027641 41 LIQVTDFRSNTWEAKRSVLQLDDMRDEIGI--------GG----SWSEFIDYVVASIK-----SEDVKLILEGHSNADGA 103 (220)
Q Consensus 41 ~v~vTDfHSntW~~slSv~~LeDlRD~VGI--------GG----SwsdF~dYl~asls-----S~~VkL~l~~~s~s~G~ 103 (220)
.++|||=. .|.. ++.+.+.-..-|| +| +++.... +.+.+. ..++=+-+++ |.
T Consensus 46 vlIVtd~~--v~~~---~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~-~~~~l~~~~~~r~d~IIavGG-----Gs 114 (368)
T 3qbe_A 46 VAVVHQPG--LAET---AEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGF-IWEVLGRIGIGRKDALVSLGG-----GA 114 (368)
T ss_dssp EEEEECGG--GHHH---HHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHH-HHHHHHHHTCCTTCEEEEEES-----HH
T ss_pred EEEEECcc--HHHH---HHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHH-HHHHHHHcCCCCCcEEEEECC-----hH
Confidence 57788854 4552 4444443333343 33 4544433 333333 2367777776 44
Q ss_pred --chheeeeecc-CCCCeeEEecccc
Q 027641 104 --AYAKIVAQKS-KGMPRISISLTRL 126 (220)
Q Consensus 104 --~~akLVA~Ka-KGmPrItI~L~kl 126 (220)
|.||.+|--- .|+|.|.||-|.+
T Consensus 115 v~D~ak~~Aa~~~rgip~i~IPTTll 140 (368)
T 3qbe_A 115 ATDVAGFAAATWLRGVSIVHLPTTLL 140 (368)
T ss_dssp HHHHHHHHHHHGGGCCEEEEEECSHH
T ss_pred HHHHHHHHHHHhccCCcEEEECCCCc
Confidence 7899998443 5999999999876
No 12
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.81 E-value=87 Score=25.13 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=36.2
Q ss_pred CCCeeEEecccccchhHHHHHHHhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 027641 115 GMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180 (220)
Q Consensus 115 GmPrItI~L~kl~~saa~D~ma~lsl~lf~a~rs~~~~~~~eqe~~s~L~~~L~sEkekne~iq~q 180 (220)
+|+. .+.|..|++--.. . .++ .+...++.-..|++|+.+|...|..++.|.+++.++
T Consensus 7 ~m~~-~~dLs~LteeEr~-~----Il~---VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k~~~~~~~ 63 (153)
T 2zet_C 7 GMGK-RLDLSTLTDEEAE-H----VWA---VVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDT 63 (153)
T ss_dssp -----CCCCTTSCHHHHH-H----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCcc-CCCcccCCHHHHH-H----HHH---HHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4553 3677777764432 2 222 234555566789999999999998888788877654
No 13
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=27.32 E-value=18 Score=31.01 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=37.7
Q ss_pred eEEEEecccccchhhccccchhh-hhHhhhcCCCCh-HHHHHHHHHhcccccceEeec
Q 027641 40 LLIQVTDFRSNTWEAKRSVLQLD-DMRDEIGIGGSW-SEFIDYVVASIKSEDVKLILE 95 (220)
Q Consensus 40 L~v~vTDfHSntW~~slSv~~Le-DlRD~VGIGGSw-sdF~dYl~aslsS~~VkL~l~ 95 (220)
|.++=||+|+-.=...+|.++-- ++| -|..|..+ .||++.+..+++++++++-=+
T Consensus 169 iImLNTDlHnp~vk~kMT~~~FikN~r-g~n~g~d~p~e~L~~iY~~I~~~ei~~~ee 225 (230)
T 1ku1_A 169 IIMLNTDLHNPQVKEHMSFEDYSGNLK-GCCNHKDFPFWYLDRVYCSIRDKEIVMPEE 225 (230)
T ss_dssp HHHHHHHHTCTTCSSCCCHHHHHHHTT-TCBTTBCCCHHHHHHHHHHHHHSCCCCC--
T ss_pred HHHHhhhhccccccCCCCHHHHHHHhh-cccCCCCCCHHHHHHHHHHHHhCcccCCcc
Confidence 45566999987666777776543 333 23335556 589999999999999876433
No 14
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=25.92 E-value=1.2e+02 Score=21.03 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.1
Q ss_pred HHHHHHhhHHHHHHHHHhh
Q 027641 132 TEAMAKLSLELFTAFRSMQ 150 (220)
Q Consensus 132 ~D~ma~lsl~lf~a~rs~~ 150 (220)
..+|.+|+=+||+||-+-+
T Consensus 8 ~~iI~sLs~eLy~AFihE~ 26 (55)
T 3fwb_B 8 KDFIDTMTRELYDAFLHER 26 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999997644
No 15
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=23.29 E-value=37 Score=24.58 Aligned_cols=47 Identities=11% Similarity=0.385 Sum_probs=35.3
Q ss_pred EEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeec
Q 027641 41 LIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILE 95 (220)
Q Consensus 41 ~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~l~ 95 (220)
.|.+.|-.-.+|+-.++.. .+.+.+.++|.+|+. ...|+-||+ |+|+
T Consensus 41 ~v~L~~~~G~~W~v~~~~~-----~~~~~l~~GW~~Fv~--~~~L~~GD~-lvF~ 87 (104)
T 1yel_A 41 TVDLLDYSGRSWTVRMKKR-----GEKVFLTVGWENFVK--DNNLEDGKY-LQFI 87 (104)
T ss_dssp EEEEEETTSCEEEEEEEEE-----TTEEEECTTHHHHHH--HHTCCTTCE-EEEE
T ss_pred EEEEECCCCCEEEEEEEEE-----CCcEEEccChHHHHH--HcCCCCCCE-EEEE
Confidence 5667777889999888754 357899999999985 357888884 3444
No 16
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=23.16 E-value=18 Score=32.04 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.3
Q ss_pred CCCCeeEEecccccchhHH
Q 027641 114 KGMPRISISLTRLTGSAAT 132 (220)
Q Consensus 114 KGmPrItI~L~kl~~saa~ 132 (220)
+|+|.|.||-|-.+||.++
T Consensus 142 ~~~p~i~IPTTagtgSevt 160 (407)
T 1vlj_A 142 KALPIFDVLTISATGTEMN 160 (407)
T ss_dssp CCCCEEEEECSCSSCGGGS
T ss_pred CCCCEEEEeCCCCcchhhc
Confidence 6999999999988887653
No 17
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=22.35 E-value=16 Score=28.26 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=16.7
Q ss_pred hhhcCCCChHHHHHHHHHhc
Q 027641 66 DEIGIGGSWSEFIDYVVASI 85 (220)
Q Consensus 66 D~VGIGGSwsdF~dYl~asl 85 (220)
=.|-+||+|.++-+||..--
T Consensus 56 vMVRVGGGW~~L~~yL~khd 75 (97)
T 1v5r_A 56 VMVRVGGGWETFAGYLLKHD 75 (97)
T ss_dssp EEEEETTEEEEHHHHHHHHC
T ss_pred EEEEeCCcHHHHHHHHHHcC
Confidence 36889999999999998633
No 18
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=22.33 E-value=1.1e+02 Score=18.85 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=20.2
Q ss_pred CCCeeEEecccccchhHHHHHHHhhHHHHHHHHH
Q 027641 115 GMPRISISLTRLTGSAATEAMAKLSLELFTAFRS 148 (220)
Q Consensus 115 GmPrItI~L~kl~~saa~D~ma~lsl~lf~a~rs 148 (220)
.||.|+|.+.. +. ..+....|+-++++++..
T Consensus 2 ~MP~i~i~~~~--g~-s~e~k~~l~~~l~~~l~~ 32 (63)
T 2x4k_A 2 MMPIVNVKLLE--GR-SDEQLKNLVSEVTDAVEK 32 (63)
T ss_dssp CCCEEEEEEES--CC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcC--CC-CHHHHHHHHHHHHHHHHH
Confidence 39999998765 32 335566666677776643
No 19
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=21.05 E-value=55 Score=24.69 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=29.8
Q ss_pred cccCCCCCCccce-EEEEeCCCCCCeEEEEecccccchhhcccc
Q 027641 16 EWADSRSDSLGRF-LFHVSAPDSSHLLIQVTDFRSNTWEAKRSV 58 (220)
Q Consensus 16 e~~~~~s~~~~pf-LFh~~a~ds~hL~v~vTDfHSntW~~slSv 58 (220)
+|.++. +--|+ -|.+.+..++.|+|..+|-.-++|++...+
T Consensus 63 ~~~~~i--S~nP~~~F~~~~~~~g~l~v~~~Dn~G~~~~~~~~i 104 (107)
T 1v8h_A 63 RPGPST--SANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKL 104 (107)
T ss_dssp CCCSSC--CSSCEEEEEEECCSCEEEEEEEEETTSCEEEEEEEE
T ss_pred EeCCcc--ccCCeEEEEEecCCCceEEEEEEECCCCEEEEEEEE
Confidence 455432 22444 477777777789999999999999988655
No 20
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=20.73 E-value=86 Score=23.12 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=26.3
Q ss_pred HHHHHHHHhhHhH--HHHHHHHHHHHHHHHHHH
Q 027641 141 ELFTAFRSMQTLI--VQEQERCLQLEKEAAAEK 171 (220)
Q Consensus 141 ~lf~a~rs~~~~~--~~eqe~~s~L~~~L~sEk 171 (220)
+||.++|.+|--+ +++||-+.-|++-+..+-
T Consensus 18 el~sSLK~iq~~L~DsQSQeDi~lllqL~~~~D 50 (72)
T 1vf6_C 18 DLFSSLKHIQHTLVDSQSQEDISLLLQLVQNRD 50 (72)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHH
Confidence 5899999999999 999999999888776543
No 21
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=20.55 E-value=1.8e+02 Score=19.90 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=23.9
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 027641 147 RSMQTLIVQEQERCLQLEKEAAAEKERNEN 176 (220)
Q Consensus 147 rs~~~~~~~eqe~~s~L~~~L~sEkekne~ 176 (220)
...+.++.+.|+-+++|.+.+..-=|.=+|
T Consensus 21 ~eik~~L~~QQ~g~~~Li~ivk~DleDL~i 50 (51)
T 3t98_A 21 REIKQHLKQQQEGLSHLISIIKDDLEDIKL 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhc
Confidence 467889999999999999998776554443
No 22
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=20.17 E-value=33 Score=29.08 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=36.4
Q ss_pred eEEEEecccccchhhccccchh-hhhHhhhcC--CCCh-HHHHHHHHHhcccccceE
Q 027641 40 LLIQVTDFRSNTWEAKRSVLQL-DDMRDEIGI--GGSW-SEFIDYVVASIKSEDVKL 92 (220)
Q Consensus 40 L~v~vTDfHSntW~~slSv~~L-eDlRD~VGI--GGSw-sdF~dYl~aslsS~~VkL 92 (220)
|..+=||+|+-.=...+|.++- .++| || |+.+ .||+.++.+++++++.++
T Consensus 151 iImLNTDlHn~~vk~kMt~~~Fi~n~r---g~n~g~d~p~e~L~~iYd~I~~~ei~l 204 (211)
T 3ltl_A 151 IIMLTTDLHSPQVKNKMTKEQYIKMNR---GINDSKDLPEEYLSAIYNEIAGKKISM 204 (211)
T ss_dssp HHHHHHHHTCTTCCSCCCHHHHHHHTC---SSCSSSSCCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHhhhhcCccccCCCCHHHHHHHhh---cccCCCCCCHHHHHHHHHHHHhCCccC
Confidence 3455699998777777777653 3344 55 4444 689999999999999876
Done!