Query 027641
Match_columns 220
No_of_seqs 25 out of 27
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 22:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027641.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027641hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yela1 b.142.1.2 (A:1-102) At 32.1 9.1 0.00067 26.4 1.7 48 41-96 39-86 (102)
2 d1v8ha1 b.1.18.19 (A:2-107) Su 25.4 19 0.0014 25.6 2.4 41 16-58 63-104 (106)
3 d1i6la_ c.26.1.1 (A:) Tryptoph 23.1 35 0.0025 27.2 4.0 52 35-96 30-81 (326)
4 d1wida_ b.142.1.2 (A:) DNA-bin 22.1 16 0.0011 25.2 1.4 51 39-94 44-94 (117)
5 d1ik9a1 b.59.1.1 (A:1-117) XRC 22.0 70 0.0051 23.5 5.2 66 28-96 19-90 (117)
6 d1xsza1 a.118.3.1 (A:1-197) Ra 17.9 18 0.0013 28.1 1.0 55 40-94 139-196 (197)
7 d2guya1 b.71.1.1 (A:382-476) F 16.7 42 0.0031 23.6 2.7 25 106-130 68-92 (95)
8 d1vlra1 d.13.1.3 (A:146-337) m 16.4 32 0.0023 27.0 2.1 45 26-72 117-163 (192)
9 d2aaaa1 b.71.1.1 (A:382-476) F 15.5 34 0.0025 24.0 2.0 24 106-129 68-91 (95)
10 d1kpia_ c.66.1.18 (A:) CmaA2 { 14.8 67 0.0049 25.4 3.8 54 39-92 112-169 (291)
No 1
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.09 E-value=9.1 Score=26.44 Aligned_cols=48 Identities=10% Similarity=0.350 Sum_probs=35.0
Q ss_pred EEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeecC
Q 027641 41 LIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEG 96 (220)
Q Consensus 41 ~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~l~~ 96 (220)
.|.+.|-+...|.-.++.. ++.+.++++|.+|+.. ..|+-||+ ++|+-
T Consensus 39 ~i~L~d~~G~~W~v~~~~~-----~~~~~~~~GW~~Fv~~--n~L~~GD~-~vF~~ 86 (102)
T d1yela1 39 TVDLLDYSGRSWTVRMKKR-----GEKVFLTVGWENFVKD--NNLEDGKY-LQFIY 86 (102)
T ss_dssp EEEEEETTSCEEEEEEEEE-----TTEEEECTTHHHHHHH--HTCCTTCE-EEEEE
T ss_pred EEEEEcCCCCEEEEEEEEe-----CCeEEEccCHHHHHHH--cCCCcCCE-EEEEE
Confidence 4566788899998776543 4567889999999864 67888884 44543
No 2
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=25.35 E-value=19 Score=25.63 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=31.1
Q ss_pred cccCCCCCCccce-EEEEeCCCCCCeEEEEecccccchhhcccc
Q 027641 16 EWADSRSDSLGRF-LFHVSAPDSSHLLIQVTDFRSNTWEAKRSV 58 (220)
Q Consensus 16 e~~~~~s~~~~pf-LFh~~a~ds~hL~v~vTDfHSntW~~slSv 58 (220)
+|.+ +.+--|+ -|++.+...+.|+|..+|-+-++|+++..+
T Consensus 63 ~~~~--svS~NP~~~F~~~~~~~g~l~v~~~Dn~G~~~~~~~~I 104 (106)
T d1v8ha1 63 RPGP--STSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKL 104 (106)
T ss_dssp CCCS--SCCSSCEEEEEEECCSCEEEEEEEEETTSCEEEEEEEE
T ss_pred EcCC--cccCCCeEEEEEccCCCceEEEEEEECCCCEEEEEEEE
Confidence 4444 3344554 478888888899999999999999988765
No 3
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=23.09 E-value=35 Score=27.24 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCCCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeecC
Q 027641 35 PDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEG 96 (220)
Q Consensus 35 ~ds~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~l~~ 96 (220)
.+...+.|.++|+|+.|.. .+.+++|+-+ ..-..+|+..++--+++.+.+.-
T Consensus 30 q~~~~~~i~iAD~halt~~-----~~~~~l~~~~-----~~~~~~~lA~G~dp~k~~i~~qS 81 (326)
T d1i6la_ 30 QHEYNCYFCIVDQHAITVW-----QDPHELRQNI-----RRLAALYLAVGIDPTQATLFIQS 81 (326)
T ss_dssp TTTSEEEEEECHHHHTTSC-----CCHHHHHHHH-----HHHHHHHHHTTCCTTTSEEEEGG
T ss_pred hCCCCEEEEeehHHhhccC-----CCHHHHHHHH-----HHHHHHhhhhhccccceEEEeec
Confidence 3445689999999986543 2456776644 44558899999999999988863
No 4
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.08 E-value=16 Score=25.22 Aligned_cols=51 Identities=18% Similarity=0.388 Sum_probs=37.6
Q ss_pred CeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEee
Q 027641 39 HLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLIL 94 (220)
Q Consensus 39 hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~l 94 (220)
..-|++.|.|...|+-.+++-.-. ..-.++++|.+|+.- ..|+-||+=+..
T Consensus 44 ~~~~~~~d~~g~~W~~~~~~~~~~---~~~~l~~GW~~Fv~~--~~Lk~GD~~~F~ 94 (117)
T d1wida_ 44 GVLLNFEDVNGKVWRFRYSYWNSS---QSYVLTKGWSRFVKE--KNLRAGDVVSFS 94 (117)
T ss_dssp CEEEEEEETTTEEEEEEEEEETTT---TEEEEESSHHHHHHH--TTCCTTCEEEEE
T ss_pred cEEEEEEeCCCCEEEEEEEEECCC---CceEEecCHHHHHHH--cCCCCCCEEEEE
Confidence 467999999999999888774222 122466679999875 459999987654
No 5
>d1ik9a1 b.59.1.1 (A:1-117) XRCC4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.03 E-value=70 Score=23.51 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=50.6
Q ss_pred eEEEEeCCC-CCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhc-----ccccceEeecC
Q 027641 28 FLFHVSAPD-SSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI-----KSEDVKLILEG 96 (220)
Q Consensus 28 fLFh~~a~d-s~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~asl-----sS~~VkL~l~~ 96 (220)
||+----.| .+...|..||.| ++|....|-+++--+-|+++- --..|++-++..| ..++-++.|..
T Consensus 19 FL~vsw~~dlgsGf~l~LtDG~-saW~G~Vse~dis~eA~~m~M--e~e~Yv~el~kAl~~~~~~~~~y~F~~s~ 90 (117)
T d1ik9a1 19 FLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSK 90 (117)
T ss_dssp EEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHCC----CCCEEEEEET
T ss_pred EEEEEeeecCCCceEEEEeCCc-eeeeeEECHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEEecc
Confidence 454444444 345889999999 679999999999999998765 4678999999888 45677787764
No 6
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=17.88 E-value=18 Score=28.06 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=36.9
Q ss_pred eEEEEecccccch--hhccccchh-hhhHhhhcCCCChHHHHHHHHHhcccccceEee
Q 027641 40 LLIQVTDFRSNTW--EAKRSVLQL-DDMRDEIGIGGSWSEFIDYVVASIKSEDVKLIL 94 (220)
Q Consensus 40 L~v~vTDfHSntW--~~slSv~~L-eDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~l 94 (220)
+.++-||+|+-.= ...++.++- .++|..-+=..==.||++++.+++++...+|-|
T Consensus 139 iimLnTDlHnp~v~~k~kMt~~~Fi~n~r~~~~~~~~~~e~L~~iY~~I~~~~~~l~~ 196 (197)
T d1xsza1 139 TIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNF 196 (197)
T ss_dssp HHHHHHHHHCTTSCGGGSCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCB
T ss_pred HHHHhccccCccccccCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCCCeeeec
Confidence 4455699997643 556777654 555543321223468999999999999988754
No 7
>d2guya1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}
Probab=16.67 E-value=42 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=19.9
Q ss_pred heeeeeccCCCCeeEEecccccchh
Q 027641 106 AKIVAQKSKGMPRISISLTRLTGSA 130 (220)
Q Consensus 106 akLVA~KaKGmPrItI~L~kl~~sa 130 (220)
+-|-..-.+|+|||=+|-.++.++.
T Consensus 68 G~l~v~m~~G~PrV~~P~s~l~gSG 92 (95)
T d2guya1 68 GNVPVPMAGGLPRVLYPTEKLAGSK 92 (95)
T ss_dssp SCEEEEECTTCCEEEEEGGGGTTSS
T ss_pred CEEEEEecCCeeEEEEeHHHCcCCc
Confidence 3456666789999999999998753
No 8
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.37 E-value=32 Score=27.01 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=25.8
Q ss_pred cceEEEEeCCCCCCeEEEEe--cccccchhhccccchhhhhHhhhcCCC
Q 027641 26 GRFLFHVSAPDSSHLLIQVT--DFRSNTWEAKRSVLQLDDMRDEIGIGG 72 (220)
Q Consensus 26 ~pfLFh~~a~ds~hL~v~vT--DfHSntW~~slSv~~LeDlRD~VGIGG 72 (220)
-++.||. +|+..|||+||. ||=+.. ...-----|+|+=+-+-+|+
T Consensus 117 ~Rig~H~-~PSv~HLHlHvi~~~~~~~g-~~~~ra~lL~dvI~nLe~~~ 163 (192)
T d1vlra1 117 LRVYLHY-LPSYYHLHVHFTALGFEAPG-SGVERAHLLAQVIENLECDP 163 (192)
T ss_dssp EEEEEES-SCSSSSCEEEEEETTSCCTT-CBTTTEEEHHHHHHHHHHCT
T ss_pred eEEEEEC-CCCEeeeEEEEEeccCCCCc-cccceeeeHHHHHHHHhcCc
Confidence 3577886 568999999997 443321 11111224666666555543
No 9
>d2aaaa1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus niger, acid amylase [TaxId: 5061]}
Probab=15.54 E-value=34 Score=24.02 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=19.3
Q ss_pred heeeeeccCCCCeeEEecccccch
Q 027641 106 AKIVAQKSKGMPRISISLTRLTGS 129 (220)
Q Consensus 106 akLVA~KaKGmPrItI~L~kl~~s 129 (220)
+-|-..-.+|+|||=+|-..+.++
T Consensus 68 G~l~V~m~~G~PrV~~P~s~l~gS 91 (95)
T d2aaaa1 68 GDIPVPMASGLPRVLLPASVVDSS 91 (95)
T ss_dssp SCEEEEECTTCCEEEEEHHHHTTS
T ss_pred CEEEEEecCCEeEEEEeHHHccCC
Confidence 446666778999999999988775
No 10
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.80 E-value=67 Score=25.45 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=41.5
Q ss_pred CeEEEEec--ccccchhhccccchhhhhHhhhcCCCC--hHHHHHHHHHhcccccceE
Q 027641 39 HLLIQVTD--FRSNTWEAKRSVLQLDDMRDEIGIGGS--WSEFIDYVVASIKSEDVKL 92 (220)
Q Consensus 39 hL~v~vTD--fHSntW~~slSv~~LeDlRD~VGIGGS--wsdF~dYl~aslsS~~VkL 92 (220)
.+.+...| +..+++++..|++.+|=|.|..+--|- |..|+.-+...|+-|-+=+
T Consensus 112 ~v~~~~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~ 169 (291)
T d1kpia_ 112 RKEVRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRML 169 (291)
T ss_dssp CEEEEECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEE
T ss_pred hhhhhhhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceE
Confidence 35555566 445789999999999999886554443 8999999999999877543
Done!