Query 027642
Match_columns 220
No_of_seqs 312 out of 1174
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 13:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14116 gpmA phosphoglyceromu 100.0 8.9E-32 1.9E-36 226.4 17.9 149 65-213 1-219 (228)
2 PRK14119 gpmA phosphoglyceromu 100.0 1.9E-31 4.1E-36 224.4 17.4 149 65-213 1-219 (228)
3 PRK14117 gpmA phosphoglyceromu 100.0 7.6E-31 1.7E-35 221.1 18.2 152 65-216 1-222 (230)
4 PRK15004 alpha-ribazole phosph 100.0 6.4E-31 1.4E-35 216.5 17.2 148 66-216 1-189 (199)
5 PRK13463 phosphatase PhoE; Pro 100.0 7.1E-31 1.5E-35 217.1 17.4 150 65-217 2-193 (203)
6 PRK03482 phosphoglycerate muta 100.0 9.9E-31 2.1E-35 217.7 18.2 145 65-212 1-186 (215)
7 PRK14118 gpmA phosphoglyceromu 100.0 1.5E-30 3.3E-35 218.8 17.9 148 66-213 1-218 (227)
8 TIGR03848 MSMEG_4193 probable 100.0 2.3E-30 4.9E-35 213.9 17.2 149 67-218 1-194 (204)
9 PRK14120 gpmA phosphoglyceromu 100.0 2.5E-30 5.5E-35 220.2 17.9 150 63-212 2-219 (249)
10 PRK01112 phosphoglyceromutase; 100.0 1E-30 2.2E-35 220.0 15.3 150 65-216 1-221 (228)
11 PRK13462 acid phosphatase; Pro 100.0 3.4E-30 7.4E-35 213.3 17.5 152 64-215 4-186 (203)
12 COG0406 phoE Broad specificity 100.0 2.3E-30 5.1E-35 214.0 16.5 150 64-214 1-191 (208)
13 PRK14115 gpmA phosphoglyceromu 100.0 5.5E-30 1.2E-34 217.9 18.2 148 66-213 1-218 (247)
14 PRK01295 phosphoglyceromutase; 100.0 7.4E-30 1.6E-34 211.7 18.0 148 65-212 2-194 (206)
15 TIGR01258 pgm_1 phosphoglycera 100.0 1.8E-29 4E-34 214.5 17.9 148 66-213 1-218 (245)
16 COG2062 SixA Phosphohistidine 100.0 2.2E-28 4.7E-33 194.6 16.5 140 65-213 1-143 (163)
17 TIGR03162 ribazole_cobC alpha- 100.0 1.3E-28 2.9E-33 198.4 15.6 138 68-208 1-177 (177)
18 TIGR00249 sixA phosphohistidin 100.0 5.5E-28 1.2E-32 191.6 17.7 138 66-212 1-140 (152)
19 PRK07238 bifunctional RNase H/ 100.0 7.2E-27 1.6E-31 209.4 19.9 151 61-213 167-357 (372)
20 PRK10848 phosphohistidine phos 99.9 1.3E-26 2.8E-31 185.0 18.0 137 66-211 1-139 (159)
21 cd07067 HP_PGM_like Histidine 99.9 1.6E-26 3.5E-31 181.6 16.8 134 67-212 1-143 (153)
22 COG0588 GpmA Phosphoglycerate 99.9 1E-26 2.2E-31 189.7 11.6 149 65-213 1-219 (230)
23 KOG0235 Phosphoglycerate mutas 99.9 4.8E-26 1E-30 188.1 15.5 150 63-212 3-200 (214)
24 PTZ00122 phosphoglycerate muta 99.9 5.5E-25 1.2E-29 191.9 18.2 146 66-216 103-281 (299)
25 PF00300 His_Phos_1: Histidine 99.9 1.5E-25 3.2E-30 175.8 10.4 123 67-189 1-158 (158)
26 smart00855 PGAM Phosphoglycera 99.9 4.1E-25 9E-30 174.5 11.9 123 67-189 1-155 (155)
27 PTZ00322 6-phosphofructo-2-kin 99.9 1.1E-24 2.3E-29 208.3 14.9 162 47-212 405-626 (664)
28 cd07040 HP Histidine phosphata 99.9 9.4E-24 2E-28 164.8 16.2 132 67-212 1-143 (153)
29 PTZ00123 phosphoglycerate muta 99.9 3.3E-23 7.1E-28 175.2 16.3 131 83-213 8-206 (236)
30 PRK15416 lipopolysaccharide co 99.9 2.4E-22 5.2E-27 165.0 15.6 131 65-211 54-186 (201)
31 PRK06193 hypothetical protein; 99.9 4.1E-22 9E-27 164.8 15.1 124 66-195 43-176 (206)
32 KOG4609 Predicted phosphoglyce 99.8 6.5E-18 1.4E-22 138.1 13.6 143 64-212 93-261 (284)
33 KOG0234 Fructose-6-phosphate 2 99.7 1.7E-17 3.8E-22 148.6 12.9 169 46-218 224-427 (438)
34 KOG4754 Predicted phosphoglyce 99.6 6.6E-15 1.4E-19 120.4 12.7 78 57-134 6-94 (248)
35 KOG3734 Predicted phosphoglyce 99.6 2.6E-14 5.6E-19 121.8 12.9 111 86-196 66-216 (272)
36 cd07061 HP_HAP_like Histidine 98.2 2.1E-06 4.5E-11 72.3 5.6 60 66-134 4-73 (242)
37 PF00328 His_Phos_2: Histidine 96.9 0.0029 6.3E-08 55.0 7.1 45 90-134 63-116 (347)
38 KOG3720 Lysosomal & prostatic 96.0 0.032 7E-07 51.1 8.4 71 64-134 34-127 (411)
39 PRK10173 glucose-1-phosphatase 95.9 0.049 1.1E-06 49.9 9.1 71 64-134 31-128 (413)
40 PRK10172 phosphoanhydride phos 95.6 0.073 1.6E-06 49.1 8.7 71 64-134 34-130 (436)
41 KOG1057 Arp2/3 complex-interac 94.1 0.084 1.8E-06 51.3 5.1 46 89-134 511-571 (1018)
42 COG1136 SalX ABC-type antimicr 66.6 15 0.00034 30.9 5.5 35 155-189 174-208 (226)
43 PF02698 DUF218: DUF218 domain 52.4 1E+02 0.0022 23.4 7.9 96 86-191 14-115 (155)
44 PRK02269 ribose-phosphate pyro 50.5 79 0.0017 28.0 7.5 100 86-194 140-266 (320)
45 COG1570 XseA Exonuclease VII, 47.3 1.8E+02 0.0038 27.2 9.3 81 98-185 110-204 (440)
46 PF01094 ANF_receptor: Recepto 45.7 1.9E+02 0.004 24.5 9.4 100 90-194 101-200 (348)
47 COG4181 Predicted ABC-type tra 42.7 1.1E+02 0.0024 25.3 6.5 36 156-191 179-214 (228)
48 KOG1382 Multiple inositol poly 42.7 54 0.0012 30.6 5.2 53 83-135 126-183 (467)
49 COG1116 TauB ABC-type nitrate/ 39.8 60 0.0013 27.8 4.8 44 140-185 149-192 (248)
50 COG3845 ABC-type uncharacteriz 39.3 1.6E+02 0.0035 27.8 7.8 84 94-183 113-199 (501)
51 KOG3672 Histidine acid phospha 39.0 55 0.0012 30.0 4.6 43 89-131 168-223 (487)
52 PRK01259 ribose-phosphate pyro 38.5 1.3E+02 0.0027 26.5 6.8 90 98-195 145-258 (309)
53 COG1121 ZnuC ABC-type Mn/Zn tr 38.4 72 0.0016 27.4 5.1 27 157-184 173-199 (254)
54 PRK02458 ribose-phosphate pyro 38.1 1.7E+02 0.0037 25.9 7.6 89 100-195 156-268 (323)
55 cd06366 PBP1_GABAb_receptor Li 38.1 2.6E+02 0.0057 24.0 8.9 100 90-196 115-215 (350)
56 COG3910 Predicted ATPase [Gene 37.4 76 0.0017 26.5 4.8 26 162-188 167-192 (233)
57 PF01764 Lipase_3: Lipase (cla 36.8 1.3E+02 0.0028 22.1 5.9 36 160-195 48-86 (140)
58 PRK04923 ribose-phosphate pyro 36.4 1.6E+02 0.0036 26.0 7.2 90 99-194 153-266 (319)
59 PRK00553 ribose-phosphate pyro 35.2 1.6E+02 0.0034 26.3 7.0 88 98-193 154-266 (332)
60 PRK07199 phosphoribosylpyropho 34.7 1.6E+02 0.0035 25.7 6.9 87 98-193 148-259 (301)
61 PF06821 Ser_hydrolase: Serine 32.8 67 0.0014 25.5 3.9 36 158-193 38-73 (171)
62 COG3840 ThiQ ABC-type thiamine 32.1 93 0.002 25.9 4.5 45 139-185 147-191 (231)
63 PRK15045 cellulose biosynthesi 30.3 78 0.0017 30.0 4.3 39 156-194 120-158 (519)
64 cd03255 ABC_MJ0796_Lo1CDE_FtsE 30.2 1.1E+02 0.0025 24.6 5.0 32 155-186 172-203 (218)
65 TIGR02211 LolD_lipo_ex lipopro 30.1 1.1E+02 0.0023 24.8 4.8 31 155-185 173-203 (221)
66 cd03257 ABC_NikE_OppD_transpor 30.0 1E+02 0.0022 25.0 4.6 43 141-185 165-207 (228)
67 TIGR01277 thiQ thiamine ABC tr 28.9 1.2E+02 0.0025 24.5 4.8 43 141-185 148-190 (213)
68 TIGR00237 xseA exodeoxyribonuc 28.4 4.7E+02 0.01 24.1 9.5 79 99-185 105-198 (432)
69 TIGR02315 ABC_phnC phosphonate 28.0 1.1E+02 0.0024 25.1 4.6 61 141-206 165-225 (243)
70 COG0497 RecN ATPase involved i 28.0 70 0.0015 30.7 3.6 35 155-191 467-501 (557)
71 PF12048 DUF3530: Protein of u 27.8 1.7E+02 0.0038 25.6 5.9 37 160-196 174-214 (310)
72 cd03261 ABC_Org_Solvent_Resist 27.8 1.2E+02 0.0026 24.9 4.7 60 141-205 156-215 (235)
73 cd03293 ABC_NrtD_SsuB_transpor 27.7 1.1E+02 0.0025 24.7 4.6 31 155-185 163-193 (220)
74 TIGR01251 ribP_PPkin ribose-ph 27.5 2.5E+02 0.0055 24.5 6.9 38 97-135 145-182 (308)
75 PRK11831 putative ABC transpor 27.3 1.2E+02 0.0026 25.7 4.7 42 141-184 163-204 (269)
76 COG2390 DeoR Transcriptional r 27.2 4.5E+02 0.0097 23.4 10.0 92 96-196 41-136 (321)
77 PRK11629 lolD lipoprotein tran 27.2 1.3E+02 0.0027 24.7 4.8 32 155-186 177-208 (233)
78 cd03237 ABC_RNaseL_inhibitor_d 27.0 1.2E+02 0.0025 25.5 4.5 31 155-185 147-177 (246)
79 cd03265 ABC_DrrA DrrA is the A 26.8 1.4E+02 0.003 24.2 4.9 49 155-206 163-211 (220)
80 COG3545 Predicted esterase of 26.2 1.5E+02 0.0034 24.1 4.8 39 156-194 40-78 (181)
81 PLN02369 ribose-phosphate pyro 25.9 4E+02 0.0086 23.3 7.8 91 99-195 137-252 (302)
82 cd03297 ABC_ModC_molybdenum_tr 25.9 1.2E+02 0.0027 24.4 4.4 31 155-185 163-193 (214)
83 PRK03092 ribose-phosphate pyro 25.8 3.4E+02 0.0073 23.8 7.4 90 99-194 135-250 (304)
84 cd06352 PBP1_NPR_GC_like Ligan 25.5 4.5E+02 0.0098 22.9 8.8 98 91-195 118-216 (389)
85 PF06506 PrpR_N: Propionate ca 25.4 2.2E+02 0.0047 22.5 5.7 85 90-196 14-101 (176)
86 cd03259 ABC_Carb_Solutes_like 24.6 1.4E+02 0.003 24.0 4.5 31 155-185 162-192 (213)
87 cd03225 ABC_cobalt_CbiO_domain 24.5 1.6E+02 0.0035 23.5 4.9 30 155-185 166-195 (211)
88 PF12000 Glyco_trans_4_3: Gkyc 24.5 1E+02 0.0022 24.8 3.5 21 101-121 56-76 (171)
89 cd03301 ABC_MalK_N The N-termi 24.4 1.4E+02 0.0029 24.0 4.4 31 155-185 162-192 (213)
90 PF02729 OTCace_N: Aspartate/o 24.4 3.3E+02 0.0072 20.9 9.3 76 89-169 8-94 (142)
91 cd03298 ABC_ThiQ_thiamine_tran 24.3 1.4E+02 0.003 23.9 4.5 62 116-185 129-190 (211)
92 cd03296 ABC_CysA_sulfate_impor 24.3 1.3E+02 0.0029 24.7 4.4 60 141-205 156-215 (239)
93 cd06362 PBP1_mGluR Ligand bind 24.3 5.3E+02 0.011 23.2 9.8 96 94-195 156-252 (452)
94 TIGR00960 3a0501s02 Type II (G 24.1 1.6E+02 0.0034 23.7 4.8 30 155-185 170-199 (216)
95 cd06364 PBP1_CaSR Ligand-bindi 24.1 5.3E+02 0.011 24.1 8.8 96 94-195 171-266 (510)
96 PRK10584 putative ABC transpor 24.1 1.4E+02 0.0031 24.2 4.6 32 155-186 178-209 (228)
97 cd03238 ABC_UvrA The excision 24.0 1.2E+02 0.0026 24.2 3.9 43 141-186 109-151 (176)
98 cd03258 ABC_MetN_methionine_tr 23.8 1.6E+02 0.0034 24.1 4.7 49 155-206 172-220 (233)
99 COG1122 CbiO ABC-type cobalt t 23.5 84 0.0018 26.5 3.0 31 155-185 170-200 (235)
100 PRK02812 ribose-phosphate pyro 23.3 3.8E+02 0.0082 23.8 7.3 91 97-194 165-279 (330)
101 cd03295 ABC_OpuCA_Osmoprotecti 23.3 1.5E+02 0.0033 24.3 4.6 49 155-206 167-215 (242)
102 cd03235 ABC_Metallic_Cations A 23.1 1.7E+02 0.0036 23.5 4.7 30 155-185 164-193 (213)
103 TIGR03864 PQQ_ABC_ATP ABC tran 23.1 1.6E+02 0.0036 24.1 4.7 48 155-206 164-211 (236)
104 PRK10771 thiQ thiamine transpo 23.1 1.5E+02 0.0033 24.2 4.5 79 116-205 130-208 (232)
105 PRK14250 phosphate ABC transpo 23.0 1.6E+02 0.0035 24.3 4.7 49 155-206 163-211 (241)
106 TIGR02673 FtsE cell division A 22.9 1.8E+02 0.0039 23.3 4.8 30 155-185 169-198 (214)
107 COG1131 CcmA ABC-type multidru 22.9 1.6E+02 0.0035 25.5 4.8 31 155-185 168-198 (293)
108 cd03294 ABC_Pro_Gly_Bertaine T 22.8 1.6E+02 0.0035 24.8 4.7 49 155-206 192-240 (269)
109 PRK10575 iron-hydroxamate tran 22.3 1.7E+02 0.0037 24.6 4.7 43 141-185 167-209 (265)
110 TIGR02982 heterocyst_DevA ABC 22.2 2.1E+02 0.0045 23.2 5.1 31 155-185 173-203 (220)
111 PRK11247 ssuB aliphatic sulfon 22.1 1.5E+02 0.0033 25.0 4.4 31 155-185 165-195 (257)
112 TIGR02323 CP_lyasePhnK phospho 22.0 1.6E+02 0.0035 24.4 4.5 49 155-206 180-228 (253)
113 PRK10247 putative ABC transpor 21.9 1.8E+02 0.0038 23.8 4.7 32 155-186 169-200 (225)
114 PRK11248 tauB taurine transpor 21.8 1.6E+02 0.0034 24.7 4.4 31 155-185 160-190 (255)
115 KOG0062 ATPase component of AB 21.8 3.3E+02 0.0071 26.2 6.7 50 155-211 514-563 (582)
116 PRK11701 phnK phosphonate C-P 21.8 1.6E+02 0.0035 24.5 4.5 49 155-206 183-231 (258)
117 TIGR03410 urea_trans_UrtE urea 21.5 2E+02 0.0043 23.4 4.9 48 155-205 163-210 (230)
118 cd03256 ABC_PhnC_transporter A 21.2 1.7E+02 0.0037 23.9 4.4 49 155-206 176-224 (241)
119 TIGR01166 cbiO cobalt transpor 21.2 1.9E+02 0.004 22.8 4.5 29 155-184 159-187 (190)
120 TIGR02364 dha_pts dihydroxyace 21.0 96 0.0021 23.5 2.6 20 176-195 2-25 (125)
121 TIGR02868 CydC thiol reductant 20.9 1.6E+02 0.0034 27.6 4.6 27 155-183 502-528 (529)
122 cd03219 ABC_Mj1267_LivG_branch 20.8 2.1E+02 0.0045 23.4 4.9 48 155-206 175-222 (236)
123 cd03246 ABCC_Protease_Secretio 20.7 2.3E+02 0.005 22.0 4.9 42 141-185 116-157 (173)
124 TIGR01184 ntrCD nitrate transp 20.6 2E+02 0.0042 23.6 4.7 31 155-185 146-176 (230)
125 TIGR03608 L_ocin_972_ABC putat 20.5 2.9E+02 0.0063 21.9 5.6 31 155-186 166-196 (206)
126 cd03214 ABC_Iron-Siderophores_ 20.4 2E+02 0.0044 22.5 4.6 43 141-185 117-159 (180)
127 PRK13645 cbiO cobalt transport 20.4 1.7E+02 0.0036 25.0 4.3 48 155-205 182-229 (289)
128 COG0488 Uup ATPase components 20.3 4.5E+02 0.0097 25.1 7.4 42 165-209 191-232 (530)
129 PRK15424 propionate catabolism 20.2 5.7E+02 0.012 24.5 8.1 80 88-189 40-122 (538)
No 1
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=8.9e-32 Score=226.44 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=118.5
Q ss_pred ceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcC--CCc-
Q 027642 65 ARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQG--FLE- 139 (220)
Q Consensus 65 ~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~--~~~- 139 (220)
|++|||||||+|+||..+ +|+.|.|||+.|++||+++++.|++.+++||.|||||+.||+|||++|++..+. ++.
T Consensus 1 m~~l~LVRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpL~Ra~qTA~~i~~~~~~~~~~~~ 80 (228)
T PRK14116 1 MAKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAIKTLHYALEESDQLWIPET 80 (228)
T ss_pred CCEEEEEeCCCCCCccccCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcCcCCCCcc
Confidence 578999999999999875 799999999999999999999999766679999999999999999999765321 110
Q ss_pred --c---cee-----------------------eccc--------------------cc----cccCCCCccHHHHHHHHH
Q 027642 140 --A---EVH-----------------------FISS--------------------FY----SVAAMDGQTAEHLQKAIC 167 (220)
Q Consensus 140 --~---~i~-----------------------~~~~--------------------l~----~~~~p~GEs~~~l~~ri~ 167 (220)
. ++. |..+ .| ...+|+|||+.++.+|+.
T Consensus 81 ~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~~~~~Rv~ 160 (228)
T PRK14116 81 KTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLERVI 160 (228)
T ss_pred cCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHHHHHHHHH
Confidence 0 000 0000 00 124689999999999986
Q ss_pred Hhhc-------CCCCeEEEEeChHHHHHHHHHHhcC------CcccCCceEEEEEEeCC
Q 027642 168 KYSR-------DEILTVMCMGHNRGWEEAASMFTGA------FIELKTCNAALLETTGK 213 (220)
Q Consensus 168 ~~~~-------~~~~~vliVtH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~~ 213 (220)
.++. ..+++|||||||++|++++.++++. .+.+++|++++|+++++
T Consensus 161 ~~l~~~i~~~~~~~~~vlvVsHg~vir~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T PRK14116 161 PFWEDHIAPDLLDGKNVIIAAHGNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDEK 219 (228)
T ss_pred HHHHHHHHHhhcCCCeEEEEcChHHHHHHHHHHhCCCHHHHHhccCCCCCeEEEEECCC
Confidence 6431 2468999999999999999999986 45799999999999864
No 2
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=99.98 E-value=1.9e-31 Score=224.36 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=117.6
Q ss_pred ceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcC--CC--
Q 027642 65 ARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQG--FL-- 138 (220)
Q Consensus 65 ~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~--~~-- 138 (220)
|++|||||||||+||..+ +|+.|.|||+.|++||++++++|++.++++|.|||||+.||+|||++|++..+. ++
T Consensus 1 m~~l~LvRHGeT~~N~~~~~~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpL~Ra~~TA~~i~~~~~~~~~~~~ 80 (228)
T PRK14119 1 MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVY 80 (228)
T ss_pred CCEEEEEeCCCCCcccCCCccCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEeCccHHHHHHHHHHHHhcccCCCCee
Confidence 578999999999999875 789999999999999999999999766779999999999999999999864320 11
Q ss_pred ------c-----------cce----------eeccccc------------------------cccCCCCccHHHHHHHHH
Q 027642 139 ------E-----------AEV----------HFISSFY------------------------SVAAMDGQTAEHLQKAIC 167 (220)
Q Consensus 139 ------~-----------~~i----------~~~~~l~------------------------~~~~p~GEs~~~l~~ri~ 167 (220)
+ .++ .|..... ...+|+|||+.++.+|+.
T Consensus 81 ~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~ 160 (228)
T PRK14119 81 KSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVI 160 (228)
T ss_pred ECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHHHHHHHHH
Confidence 0 000 0000000 012479999999999987
Q ss_pred Hhhc-----C--CCCeEEEEeChHHHHHHHHHHhcC------CcccCCceEEEEEEeCC
Q 027642 168 KYSR-----D--EILTVMCMGHNRGWEEAASMFTGA------FIELKTCNAALLETTGK 213 (220)
Q Consensus 168 ~~~~-----~--~~~~vliVtH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~~ 213 (220)
.++. . .+++|||||||++|++++.++++. .+.+++|++++++++++
T Consensus 161 ~~l~~~~~~~~~~~~~vlvVsHg~vir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T PRK14119 161 PFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDD 219 (228)
T ss_pred HHHHHHHHhhccCCCeEEEEeChHHHHHHHHHHhCCCHHHHhhcCCCCCceEEEEECCC
Confidence 6432 2 467899999999999999999985 35799999999999865
No 3
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=99.97 E-value=7.6e-31 Score=221.05 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=118.2
Q ss_pred ceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhc-------
Q 027642 65 ARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQ------- 135 (220)
Q Consensus 65 ~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~------- 135 (220)
|++|||||||+|+||..+ +|+.|.|||++|++||++++++|++..++++.|||||+.||+|||+++++...
T Consensus 1 m~~l~LvRHG~t~~n~~~~~qG~~D~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~sSpl~Ra~~TA~~i~~~~~~~~~~~~ 80 (230)
T PRK14117 1 MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTTNLALEASDQLWVPVE 80 (230)
T ss_pred CCEEEEEeCccccCcccCCcCCCCCCCcCHHHHHHHHHHHHHHHHcCCCCCEEEECCcHHHHHHHHHHHHhcccCCCCce
Confidence 588999999999999875 78999999999999999999999876577999999999999999999864311
Q ss_pred ---CCCc-----------cce----------eeccc------------------------cccccCCCCccHHHHHHHHH
Q 027642 136 ---GFLE-----------AEV----------HFISS------------------------FYSVAAMDGQTAEHLQKAIC 167 (220)
Q Consensus 136 ---~~~~-----------~~i----------~~~~~------------------------l~~~~~p~GEs~~~l~~ri~ 167 (220)
.+.| .++ .|..+ .....+|+||++.++.+|+.
T Consensus 81 ~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv~ 160 (230)
T PRK14117 81 KSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLERAL 160 (230)
T ss_pred eCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHHHHHHHHH
Confidence 0100 000 01000 01124589999999999986
Q ss_pred Hhhc-------CCCCeEEEEeChHHHHHHHHHHhcC------CcccCCceEEEEEEeCCcce
Q 027642 168 KYSR-------DEILTVMCMGHNRGWEEAASMFTGA------FIELKTCNAALLETTGKSWE 216 (220)
Q Consensus 168 ~~~~-------~~~~~vliVtH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~~~W~ 216 (220)
.+++ ..+++|||||||++|++++.+++|. .+.++||++++|+++++...
T Consensus 161 ~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~~~~~~~~~~n~s~~~i~~~~~~~~ 222 (230)
T PRK14117 161 PFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEKLNV 222 (230)
T ss_pred HHHHHHHHhhccCCCEEEEEeChHHHHHHHHHHhCcCHHHHhhcCCCCceEEEEEECCCCce
Confidence 5431 1357899999999999999999986 35699999999999776443
No 4
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=99.97 E-value=6.4e-31 Score=216.53 Aligned_cols=148 Identities=14% Similarity=0.202 Sum_probs=118.1
Q ss_pred eEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCcc---
Q 027642 66 RRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEA--- 140 (220)
Q Consensus 66 ~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~--- 140 (220)
|+|||||||+|.+|..+ +|+.|.|||++|++||+++++.|+. ++++.|||||+.||+|||+++++.++ ++..
T Consensus 1 ~~i~lvRHG~t~~n~~~~~~G~~d~pLt~~G~~Qa~~~~~~l~~--~~~~~i~sSpl~Ra~qTA~~i~~~~~-~~~~~~~ 77 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLRD--VPFDLVLCSELERAQHTARLVLSDRQ-LPVHIIP 77 (199)
T ss_pred CeEEEEeCCCCccccCCcEeCCCCCCcCHHHHHHHHHHHHHHhC--CCCCEEEECchHHHHHHHHHHHhcCC-CCceeCh
Confidence 57999999999999765 6889999999999999999999986 56899999999999999999987543 2110
Q ss_pred ---cee----------------------eccccccccCCCCccHHHHHHHHHHhhc-----CCCCeEEEEeChHHHHHHH
Q 027642 141 ---EVH----------------------FISSFYSVAAMDGQTAEHLQKAICKYSR-----DEILTVMCMGHNRGWEEAA 190 (220)
Q Consensus 141 ---~i~----------------------~~~~l~~~~~p~GEs~~~l~~ri~~~~~-----~~~~~vliVtH~~~i~~ll 190 (220)
++. |..+.....+|+|||+.++.+|+.++++ ..+++|||||||++|+.++
T Consensus 78 ~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~~i~~l~ 157 (199)
T PRK15004 78 ELNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVLSLLI 157 (199)
T ss_pred hheeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChHHHHHHH
Confidence 000 0011112346799999999999877542 3467899999999999999
Q ss_pred HHHhcC------CcccCCceEEEEEEeCCcce
Q 027642 191 SMFTGA------FIELKTCNAALLETTGKSWE 216 (220)
Q Consensus 191 ~~l~g~------~~~~~~~s~~~l~~~~~~W~ 216 (220)
.+++|. .+.+++|++++|+++++.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 189 (199)
T PRK15004 158 ARLLGMPAEAMWHFRVEQGCWSAIDINQGFAT 189 (199)
T ss_pred HHHhCCCHHHHhccccCCceEEEEEecCCcEE
Confidence 999986 35689999999999866543
No 5
>PRK13463 phosphatase PhoE; Provisional
Probab=99.97 E-value=7.1e-31 Score=217.12 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=118.4
Q ss_pred ceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCc---
Q 027642 65 ARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLE--- 139 (220)
Q Consensus 65 ~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~--- 139 (220)
+++|||||||||.+|..+ +|+.|.|||++|++||+++++.|+. .+++.|||||+.||+|||+++++.++ ++.
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~~~~~~l~~--~~~~~i~sSpl~Ra~qTA~~i~~~~~-~~~~~~ 78 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMKD--LSIHAIYSSPSERTLHTAELIKGERD-IPIIAD 78 (203)
T ss_pred ceEEEEEeCCCCccchhCcccCCCCCCcCHHHHHHHHHHHHHhcC--CCCCEEEECCcHHHHHHHHHHHhcCC-CCceEC
Confidence 588999999999999765 7889999999999999999999986 56899999999999999999987542 111
Q ss_pred ----------------cce---------eeccccccccCCCCccHHHHHHHHHHhhc-----CCCCeEEEEeChHHHHHH
Q 027642 140 ----------------AEV---------HFISSFYSVAAMDGQTAEHLQKAICKYSR-----DEILTVMCMGHNRGWEEA 189 (220)
Q Consensus 140 ----------------~~i---------~~~~~l~~~~~p~GEs~~~l~~ri~~~~~-----~~~~~vliVtH~~~i~~l 189 (220)
.++ .|+.+...+.+|+|||++++.+|+..++. ..+++|||||||++|+++
T Consensus 79 ~~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ir~~ 158 (203)
T PRK13463 79 EHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKLL 158 (203)
T ss_pred cCceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 000 01111122345799999999999976542 346789999999999999
Q ss_pred HHHHhcCC------c-ccCCceEEEEEEeCCccee
Q 027642 190 ASMFTGAF------I-ELKTCNAALLETTGKSWEE 217 (220)
Q Consensus 190 l~~l~g~~------~-~~~~~s~~~l~~~~~~W~~ 217 (220)
+.+++|.+ + .++++++++++++++.|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 193 (203)
T PRK13463 159 VGHFAGIEIENVWDDPFMHSASLSIIEFEDGKGEV 193 (203)
T ss_pred HHHHhCCCHHHHhhccCccCceEEEEEEeCCcEEE
Confidence 99999863 2 3689999999997765543
No 6
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.97 E-value=9.9e-31 Score=217.72 Aligned_cols=145 Identities=21% Similarity=0.299 Sum_probs=116.3
Q ss_pred ceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCc---
Q 027642 65 ARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLE--- 139 (220)
Q Consensus 65 ~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~--- 139 (220)
|++||||||||+++|..+ +|+.|.|||+.|++||+.++++|++ ..++.|||||+.||+|||++|++.++ ++.
T Consensus 1 m~~i~lvRHG~t~~n~~~~~~g~~d~~Lt~~G~~qA~~~~~~l~~--~~~~~I~sSpl~Ra~qTA~~i~~~~~-~~~~~~ 77 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAKE--LGITHIISSDLGRTRRTAEIIAQACG-CDIIFD 77 (215)
T ss_pred CcEEEEEeCCCcccccccccCCCCCCCcCHHHHHHHHHHHHHHhc--CCCCEEEECCcHHHHHHHHHHHHhcC-CCeeEC
Confidence 689999999999999764 6789999999999999999999987 45799999999999999999987654 211
Q ss_pred c---cee------------------eccc----cccccCCCCccHHHHHHHHHHhhc-----CCCCeEEEEeChHHHHHH
Q 027642 140 A---EVH------------------FISS----FYSVAAMDGQTAEHLQKAICKYSR-----DEILTVMCMGHNRGWEEA 189 (220)
Q Consensus 140 ~---~i~------------------~~~~----l~~~~~p~GEs~~~l~~ri~~~~~-----~~~~~vliVtH~~~i~~l 189 (220)
. ++. |... .....+|+||++.++.+|+..++. ..+++|||||||++|+++
T Consensus 78 ~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~~i~~l 157 (215)
T PRK03482 78 PRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLELPQGSRPLLVSHGIALGCL 157 (215)
T ss_pred hhccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 0 000 1000 012235899999999999876542 345689999999999999
Q ss_pred HHHHhcC------CcccCCceEEEEEEeC
Q 027642 190 ASMFTGA------FIELKTCNAALLETTG 212 (220)
Q Consensus 190 l~~l~g~------~~~~~~~s~~~l~~~~ 212 (220)
+.++++. .+.++||++++|++++
T Consensus 158 ~~~l~~~~~~~~~~~~~~n~sis~~~~~~ 186 (215)
T PRK03482 158 VSTILGLPAWAERRLRLRNCSISRVDYQE 186 (215)
T ss_pred HHHHhCCChhhhhccCCCCcEEEEEEEeC
Confidence 9999986 3568999999999975
No 7
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=99.97 E-value=1.5e-30 Score=218.77 Aligned_cols=148 Identities=17% Similarity=0.243 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcC--CCc--
Q 027642 66 RRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQG--FLE-- 139 (220)
Q Consensus 66 ~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~--~~~-- 139 (220)
|+|||||||+|+||..+ +|+.|.|||+.|++||++++++|++....+|.|||||+.||+|||++|++..+. ++.
T Consensus 1 m~l~LvRHG~t~~n~~~~~~G~~d~~Lt~~G~~qa~~~~~~l~~~~~~~d~i~sSpl~Ra~~TA~~i~~~~~~~~~~~~~ 80 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQVK 80 (227)
T ss_pred CEEEEEecCCCccccccCcCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHhcCCCCCCeec
Confidence 57999999999999875 789999999999999999999999765678999999999999999999865321 110
Q ss_pred ----ccee-----------------------ecccc------------------------ccccCCCCccHHHHHHHHHH
Q 027642 140 ----AEVH-----------------------FISSF------------------------YSVAAMDGQTAEHLQKAICK 168 (220)
Q Consensus 140 ----~~i~-----------------------~~~~l------------------------~~~~~p~GEs~~~l~~ri~~ 168 (220)
.++. |.... +...+|+|||+.++.+|+.+
T Consensus 81 ~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~~~~Rv~~ 160 (227)
T PRK14118 81 NWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERVLP 160 (227)
T ss_pred CCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHHHHHHHHH
Confidence 0000 00000 01235899999999999876
Q ss_pred hhc-------CCCCeEEEEeChHHHHHHHHHHhcC------CcccCCceEEEEEEeCC
Q 027642 169 YSR-------DEILTVMCMGHNRGWEEAASMFTGA------FIELKTCNAALLETTGK 213 (220)
Q Consensus 169 ~~~-------~~~~~vliVtH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~~ 213 (220)
+++ ..+++|||||||++|++++.++++. .+.+++|++++|+++++
T Consensus 161 ~l~~~~~~~~~~~~~vlvVsHggvir~ll~~~l~~~~~~~~~~~i~~~s~~~~~~~~~ 218 (227)
T PRK14118 161 FWEDQIAPALLSGKRVLVAAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDN 218 (227)
T ss_pred HHHHHHhhhhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhcccCCCCceEEEEECCC
Confidence 432 2467899999999999999999986 35799999999999864
No 8
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=99.97 E-value=2.3e-30 Score=213.92 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=116.8
Q ss_pred EEEEEcCCCCCCCCCC--CCCC-CCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCcc---
Q 027642 67 RLILLRHAKSSWEFPS--LRDH-DRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEA--- 140 (220)
Q Consensus 67 ~i~LiRHGet~~n~~~--~g~~-d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~--- 140 (220)
+|||||||||.||..+ +|+. |.|||++|++||++++++|+. .++|.|||||+.||+|||+++++.++ ++..
T Consensus 1 ~i~lvRHG~t~~n~~~~~~g~~~d~~Lt~~G~~qa~~l~~~l~~--~~~~~i~sSpl~Ra~qTA~~i~~~~~-~~~~~~~ 77 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLAD--LPIAAIVSSPLERCRETAEPIAEARG-LPPRVDE 77 (204)
T ss_pred CEEEEeCCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHHhc--CCCCEEEeCcHHHHHHHHHHHHHhcC-CCceECc
Confidence 4899999999999765 6777 599999999999999999986 67899999999999999999987653 2110
Q ss_pred ---cee---e-----------------ccccccccCCCCccHHHHHHHHHHhhc----------CCCCeEEEEeChHHHH
Q 027642 141 ---EVH---F-----------------ISSFYSVAAMDGQTAEHLQKAICKYSR----------DEILTVMCMGHNRGWE 187 (220)
Q Consensus 141 ---~i~---~-----------------~~~l~~~~~p~GEs~~~l~~ri~~~~~----------~~~~~vliVtH~~~i~ 187 (220)
++. | ..+.....+|+|||+.++.+|+..++. ..+++|||||||++|+
T Consensus 78 ~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir 157 (204)
T TIGR03848 78 RLGECDYGDWTGRELKELAKEPLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIK 157 (204)
T ss_pred ccccCCCCeeCCcCHHHHhCcHHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHH
Confidence 000 0 001112235899999999999765431 1456899999999999
Q ss_pred HHHHHHhcC------CcccCCceEEEEEEeCCcceec
Q 027642 188 EAASMFTGA------FIELKTCNAALLETTGKSWEEV 218 (220)
Q Consensus 188 ~ll~~l~g~------~~~~~~~s~~~l~~~~~~W~~~ 218 (220)
+++.+++|. .+.++||++++|+++++.|...
T Consensus 158 ~ll~~~lg~~~~~~~~~~~~n~sit~l~~~~~~~~~~ 194 (204)
T TIGR03848 158 SVLADALGMHLDLFQRIVVDPCSVSVVRYTPLRPFVL 194 (204)
T ss_pred HHHHHHhCCCHHHhheeeeCCCeEEEEEEeCCceEEE
Confidence 999999986 3469999999999987766543
No 9
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.97 E-value=2.5e-30 Score=220.22 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=117.8
Q ss_pred cCceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcC--CC
Q 027642 63 SVARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQG--FL 138 (220)
Q Consensus 63 ~~~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~--~~ 138 (220)
.+|++|||||||+|.+|..+ +|+.|.|||++|++||+++++.|++.++.|+.|||||+.||+|||+++++..+. ++
T Consensus 2 ~~m~~i~LVRHGqt~~n~~~~~~G~~D~pLTe~G~~QA~~~a~~l~~~~~~~~~IysSpl~Ra~qTA~~i~~~~~~~~~~ 81 (249)
T PRK14120 2 MMTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEAGVLPDVVYTSLLRRAIRTANLALDAADRLWIP 81 (249)
T ss_pred CCCcEEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEecChHHHHHHHHHHHHhcccCCCC
Confidence 57799999999999999865 688999999999999999999999765678999999999999999999764220 11
Q ss_pred --------c-----------ccee----------ecccccc----------------------ccCCCCccHHHHHHHHH
Q 027642 139 --------E-----------AEVH----------FISSFYS----------------------VAAMDGQTAEHLQKAIC 167 (220)
Q Consensus 139 --------~-----------~~i~----------~~~~l~~----------------------~~~p~GEs~~~l~~ri~ 167 (220)
+ .++. |..+... ..+|+|||+.++.+|+.
T Consensus 82 i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~~~~Rv~ 161 (249)
T PRK14120 82 VRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVARFL 161 (249)
T ss_pred eEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHHHHHHHH
Confidence 0 0000 0000000 01489999999999987
Q ss_pred Hhhc-------CCCCeEEEEeChHHHHHHHHHHhcC------CcccCCceEEEEEEeC
Q 027642 168 KYSR-------DEILTVMCMGHNRGWEEAASMFTGA------FIELKTCNAALLETTG 212 (220)
Q Consensus 168 ~~~~-------~~~~~vliVtH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~ 212 (220)
.+++ ..+++|||||||++|++++.++++. .+.+++|++++|++++
T Consensus 162 ~~l~~~~~~~~~~~~~iliVsHggvir~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 219 (249)
T PRK14120 162 PYWEDDIVPDLKAGKTVLIAAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDE 219 (249)
T ss_pred HHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHhCCCHHHhheeccCCCceEEEEECC
Confidence 6522 2557899999999999999999986 4578999999999975
No 10
>PRK01112 phosphoglyceromutase; Provisional
Probab=99.97 E-value=1e-30 Score=220.03 Aligned_cols=150 Identities=24% Similarity=0.300 Sum_probs=119.3
Q ss_pred ceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhc-------
Q 027642 65 ARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQ------- 135 (220)
Q Consensus 65 ~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~------- 135 (220)
|++|||||||||.+|..+ +|+.|.|||+.|++||++++++|++ .++|.|||||+.||+|||+++++.+.
T Consensus 1 M~~L~LvRHGqt~~n~~~~~~G~~D~~Lte~G~~Qa~~l~~~L~~--~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~ 78 (228)
T PRK01112 1 MALLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIKD--LPIDCIFTSTLVRSLMTALLAMTNHSSGKIPYI 78 (228)
T ss_pred CcEEEEEeCCCCccccccccCCCCCCCcCHHHHHHHHHHHHHhhc--CCCCEEEEcCcHHHHHHHHHHHHhhcccccccc
Confidence 689999999999999765 6889999999999999999999997 67899999999999999999975221
Q ss_pred -----------------------------CCCcc-----------ce---------eeccccccccCCCCccHHHHHHHH
Q 027642 136 -----------------------------GFLEA-----------EV---------HFISSFYSVAAMDGQTAEHLQKAI 166 (220)
Q Consensus 136 -----------------------------~~~~~-----------~i---------~~~~~l~~~~~p~GEs~~~l~~ri 166 (220)
.+.+. ++ .++.+.+...+|+|||+.++.+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~Rv 158 (228)
T PRK01112 79 VHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQRT 158 (228)
T ss_pred cccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHHHH
Confidence 00000 00 001111234578999999999998
Q ss_pred HHhhc-------CCCCeEEEEeChHHHHHHHHHHhcC------CcccCCceEEEEEEeCCcce
Q 027642 167 CKYSR-------DEILTVMCMGHNRGWEEAASMFTGA------FIELKTCNAALLETTGKSWE 216 (220)
Q Consensus 167 ~~~~~-------~~~~~vliVtH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~~~W~ 216 (220)
..++. ..+++|||||||++|+.++.++++. .+.+++|++++++++..++.
T Consensus 159 ~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T PRK01112 159 LPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLELPTGKPIVYEWTGQKFE 221 (228)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhcccCCcceEEEEECCCCcc
Confidence 66432 2568999999999999999999986 46799999999999876654
No 11
>PRK13462 acid phosphatase; Provisional
Probab=99.97 E-value=3.4e-30 Score=213.28 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=116.7
Q ss_pred CceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHh-c---CC
Q 027642 64 VARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHV-Q---GF 137 (220)
Q Consensus 64 ~~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~-~---~~ 137 (220)
.|++|||||||||+||..+ +|+.|.|||++|++||+++++.|++..+.++.|||||+.||+|||+++.... . .+
T Consensus 4 ~~~~i~LvRHG~t~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~L 83 (203)
T PRK13462 4 RNHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGELELDDPLVISSPRRRALDTAKLAGLTVDEVSGLL 83 (203)
T ss_pred cccEEEEEeCCCCCcccCCCccCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEECchHHHHHHHHHhcCcccccCccc
Confidence 4689999999999999765 6889999999999999999999988554334899999999999999983211 0 01
Q ss_pred Ccc-----------cee-ecccc--ccccCCCCccHHHHHHHHHHhhc-----CCCCeEEEEeChHHHHHHHHHHhcC--
Q 027642 138 LEA-----------EVH-FISSF--YSVAAMDGQTAEHLQKAICKYSR-----DEILTVMCMGHNRGWEEAASMFTGA-- 196 (220)
Q Consensus 138 ~~~-----------~i~-~~~~l--~~~~~p~GEs~~~l~~ri~~~~~-----~~~~~vliVtH~~~i~~ll~~l~g~-- 196 (220)
.|. ++. ..++. |...+|+|||+.++.+|+.++++ ..+++|||||||++|++++.++++.
T Consensus 84 rE~~~G~~eG~~~~ei~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~vir~ll~~~l~~~~ 163 (203)
T PRK13462 84 AEWDYGSYEGLTTPQIRESEPDWLVWTHGCPGGESVAQVNERADRAVALALEHMESRDVVFVSHGHFSRAVITRWVELPL 163 (203)
T ss_pred cccCCccccCCcHHHHHHhCchHHhhcCCCCCCccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHhCCCH
Confidence 110 000 00011 22335899999999999877543 3467899999999999999999986
Q ss_pred ----CcccCCceEEEEEEeCCcc
Q 027642 197 ----FIELKTCNAALLETTGKSW 215 (220)
Q Consensus 197 ----~~~~~~~s~~~l~~~~~~W 215 (220)
.+.+++|++++++++++.+
T Consensus 164 ~~~~~~~~~~~s~s~~~~~~~~~ 186 (203)
T PRK13462 164 AEGSRFAMPTASIAICGFEHGVR 186 (203)
T ss_pred HHhhhcccCCceEEEEEeeCCce
Confidence 3579999999999987653
No 12
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=213.97 Aligned_cols=150 Identities=20% Similarity=0.289 Sum_probs=121.1
Q ss_pred CceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCC---
Q 027642 64 VARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFL--- 138 (220)
Q Consensus 64 ~~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~--- 138 (220)
++++|||||||||.||..+ +|+.|.|||+.|++||+.+++.|+...+.++.|||||+.||+|||+++++.++ .+
T Consensus 1 ~~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sS~l~Ra~~TA~~~a~~~~-~~~~~ 79 (208)
T COG0406 1 MMMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLKRAQQTAEPLAEELG-LPLEV 79 (208)
T ss_pred CceEEEEEecCCccccccccccCCCCCCCCHHHHHHHHHHHHHHhhcCCCCCEEEECchHHHHHHHHHHHHhcC-CCcee
Confidence 4689999999999999765 67889999999999999999999976678999999999999999999999875 21
Q ss_pred cc---ce----------------------eeccccccccCCCCccHHHHHHHHHHhhc-----CCCCeEEEEeChHHHHH
Q 027642 139 EA---EV----------------------HFISSFYSVAAMDGQTAEHLQKAICKYSR-----DEILTVMCMGHNRGWEE 188 (220)
Q Consensus 139 ~~---~i----------------------~~~~~l~~~~~p~GEs~~~l~~ri~~~~~-----~~~~~vliVtH~~~i~~ 188 (220)
.. ++ .+..+.+.+.+|+||++.++.+|+..++. ...++|||||||++|++
T Consensus 80 ~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir~ 159 (208)
T COG0406 80 DDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIRA 159 (208)
T ss_pred cCCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHHH
Confidence 00 00 01112233445679999999999876542 23337999999999999
Q ss_pred HHHHHhcC------CcccCCceEEEEEEeCCc
Q 027642 189 AASMFTGA------FIELKTCNAALLETTGKS 214 (220)
Q Consensus 189 ll~~l~g~------~~~~~~~s~~~l~~~~~~ 214 (220)
++.++.+. .+.++++++++++++++.
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~si~~l~~~~~~ 191 (208)
T COG0406 160 LLAYLLGLDLEELWRLRLDNASVTVLEFDDGR 191 (208)
T ss_pred HHHHhcCCChhhHHhcCCCCceEEEEEeeCCC
Confidence 99999985 457999999999999763
No 13
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.97 E-value=5.5e-30 Score=217.93 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcC--CCc--
Q 027642 66 RRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQG--FLE-- 139 (220)
Q Consensus 66 ~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~--~~~-- 139 (220)
|+|||||||||.+|..+ +|+.|.|||+.|++||+.++++|++.++++|.|||||+.||+|||++|++.++. ++.
T Consensus 1 ~~i~LVRHGqt~~n~~~~~~G~~D~pLte~G~~QA~~la~~L~~~~~~~d~IysSpl~Ra~qTA~~i~~~~~~~~~~~~~ 80 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEEGYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPVEK 80 (247)
T ss_pred CEEEEEECCCcccccccCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHcCCCCCCceE
Confidence 57999999999999875 788999999999999999999999876789999999999999999999876531 110
Q ss_pred ----ccee-----------------------eccc--------------------cc----cccCCCCccHHHHHHHHHH
Q 027642 140 ----AEVH-----------------------FISS--------------------FY----SVAAMDGQTAEHLQKAICK 168 (220)
Q Consensus 140 ----~~i~-----------------------~~~~--------------------l~----~~~~p~GEs~~~l~~ri~~ 168 (220)
.++. |.+. .| ...+|+|||+.++.+|+.+
T Consensus 81 ~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~ 160 (247)
T PRK14115 81 SWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARVLP 160 (247)
T ss_pred CccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHHHHHHHHH
Confidence 0000 0000 00 1235899999999999866
Q ss_pred hhc-------CCCCeEEEEeChHHHHHHHHHHhcC------CcccCCceEEEEEEeCC
Q 027642 169 YSR-------DEILTVMCMGHNRGWEEAASMFTGA------FIELKTCNAALLETTGK 213 (220)
Q Consensus 169 ~~~-------~~~~~vliVtH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~~ 213 (220)
+++ ..+++|||||||++|++++.++++. .+.+++|++++|+++++
T Consensus 161 ~l~~~i~~~~~~~~~vlvVtHggvir~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (247)
T PRK14115 161 YWNETIAPQLKSGKRVLIAAHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDEN 218 (247)
T ss_pred HHHHHHHHHhcCCCeEEEEeChHHHHHHHHHHhCCCHHHhheeecCCCceEEEEECCC
Confidence 432 3457899999999999999999986 35799999999999765
No 14
>PRK01295 phosphoglyceromutase; Provisional
Probab=99.97 E-value=7.4e-30 Score=211.69 Aligned_cols=148 Identities=19% Similarity=0.304 Sum_probs=118.0
Q ss_pred ceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhc--CCCc-
Q 027642 65 ARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQ--GFLE- 139 (220)
Q Consensus 65 ~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~--~~~~- 139 (220)
.++|||||||+|++|..+ +|+.|.|||+.|++||++++++|++.++++|.|||||+.||+|||++|++.++ .++.
T Consensus 2 ~~~i~LVRHGet~~n~~~~~~G~~d~~Lt~~G~~qA~~~~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~~~~~~~~ 81 (206)
T PRK01295 2 SRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAAGLKFDIAFTSALSRAQHTCQLILEELGQPGLETI 81 (206)
T ss_pred CceEEEEeCCCCcccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEeCCcHHHHHHHHHHHHHcCCCCCCeE
Confidence 478999999999999765 68889999999999999999999976678999999999999999999988753 1110
Q ss_pred --c---cee----------------------eccccccccCCCCccHHHHHHHHHHh-h----c--CCCCeEEEEeChHH
Q 027642 140 --A---EVH----------------------FISSFYSVAAMDGQTAEHLQKAICKY-S----R--DEILTVMCMGHNRG 185 (220)
Q Consensus 140 --~---~i~----------------------~~~~l~~~~~p~GEs~~~l~~ri~~~-~----~--~~~~~vliVtH~~~ 185 (220)
. ++. ++.+.+...+|+|||+.++.+|+..+ . . ..+++|||||||++
T Consensus 82 ~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg~~ 161 (206)
T PRK01295 82 RDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNS 161 (206)
T ss_pred ECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcChHH
Confidence 0 000 01111234568999999999998763 1 1 24679999999999
Q ss_pred HHHHHHHHhcC------CcccCCceEEEEEEeC
Q 027642 186 WEEAASMFTGA------FIELKTCNAALLETTG 212 (220)
Q Consensus 186 i~~ll~~l~g~------~~~~~~~s~~~l~~~~ 212 (220)
|++++.++++. .+.+.+++..++.++.
T Consensus 162 ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
T PRK01295 162 LRALVMVLDGLTPEQILKLELATGVPIVYRLNA 194 (206)
T ss_pred HHHHHHHHhCCCHHHHhhcCCCCCCcEEEEecC
Confidence 99999999986 3568899888888864
No 15
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.97 E-value=1.8e-29 Score=214.52 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcC--CCc--
Q 027642 66 RRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQG--FLE-- 139 (220)
Q Consensus 66 ~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~--~~~-- 139 (220)
|+|||||||||.||..+ +|+.|.|||+.|++||+.++++|+..++.++.|||||++||+|||++|++.++. ++.
T Consensus 1 ~~l~lVRHGqt~~n~~~~~~G~~D~~Lt~~G~~QA~~la~~L~~~~~~~d~iysSpl~Ra~qTA~ii~~~~~~~~~~i~~ 80 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRAIHTLNIALDELDQLWIPVKK 80 (245)
T ss_pred CEEEEEeCCCcCccccCCcCCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHHHHhcCCCCCCeee
Confidence 57999999999999875 788999999999999999999999766789999999999999999999876531 110
Q ss_pred -cce---e-----------------------ecccc--------------------c----cccCCCCccHHHHHHHHHH
Q 027642 140 -AEV---H-----------------------FISSF--------------------Y----SVAAMDGQTAEHLQKAICK 168 (220)
Q Consensus 140 -~~i---~-----------------------~~~~l--------------------~----~~~~p~GEs~~~l~~ri~~ 168 (220)
..+ . |...+ | ...+|+|||+.++.+|+..
T Consensus 81 ~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~~~~Rv~~ 160 (245)
T TIGR01258 81 SWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARVLP 160 (245)
T ss_pred CcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHHHHHHHHH
Confidence 000 0 00000 0 0125789999999999876
Q ss_pred hhc-------CCCCeEEEEeChHHHHHHHHHHhcC------CcccCCceEEEEEEeCC
Q 027642 169 YSR-------DEILTVMCMGHNRGWEEAASMFTGA------FIELKTCNAALLETTGK 213 (220)
Q Consensus 169 ~~~-------~~~~~vliVtH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~~ 213 (220)
+++ ..+++|||||||++|++++.++++. .+.+++|++++++++++
T Consensus 161 ~l~~l~~~~~~~~~~vlvVsHg~vir~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (245)
T TIGR01258 161 YWNDEIAPDLLSGKRVLIVAHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDEN 218 (245)
T ss_pred HHHHHHhhhhcCCCEEEEEcChHHHHHHHHHHHCcCHHHHhheecCCCceEEEEECCC
Confidence 532 2457899999999999999999985 45799999999999764
No 16
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.96 E-value=2.2e-28 Score=194.55 Aligned_cols=140 Identities=34% Similarity=0.480 Sum_probs=120.0
Q ss_pred ceEEEEEcCCCCCCCCCCCCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceee
Q 027642 65 ARRLILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHF 144 (220)
Q Consensus 65 ~~~i~LiRHGet~~n~~~~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~ 144 (220)
||+|||+|||+++|...+..|.|||||++|++|++++|++|+++++.||.|+|||+.||+|||+++++.++ ......+
T Consensus 1 m~~L~LmRHgkA~~~~~~~~D~dR~Lt~~G~~ea~~~a~~L~~~~~~~D~VL~Spa~Ra~QTae~v~~~~~--~~~~~~~ 78 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPGIADFDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIVAEHLG--EKKVEVF 78 (163)
T ss_pred CceEEEeecccccccCCCCCCccCcCCHHHHHHHHHHHHHHHhcCCCCCEEEeChhHHHHHHHHHHHHhhC--cccceec
Confidence 68999999999999887788999999999999999999999999999999999999999999999999985 2223445
Q ss_pred ccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcC---CcccCCceEEEEEEeCC
Q 027642 145 ISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGA---FIELKTCNAALLETTGK 213 (220)
Q Consensus 145 ~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~---~~~~~~~s~~~l~~~~~ 213 (220)
.+.+|.. ....+.+.|+... +...++++|+|.|.+..++..|++. +..||++++.+++++..
T Consensus 79 ~~l~p~~------d~~~~l~~l~~~~-d~v~~vllVgH~P~l~~l~~~L~~~~~~~~~fptsgia~l~~~~~ 143 (163)
T COG2062 79 EELLPNG------DPGTVLDYLEALG-DGVGSVLLVGHNPLLEELALLLAGGARLPVKFPTSGIAVLEFDGK 143 (163)
T ss_pred cccCCCC------CHHHHHHHHHHhc-ccCceEEEECCCccHHHHHHHHccccccccCCCcccEEEEEeccc
Confidence 5555543 3667777777753 3578999999999999999999985 67899999999999953
No 17
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.96 E-value=1.3e-28 Score=198.39 Aligned_cols=138 Identities=17% Similarity=0.267 Sum_probs=109.4
Q ss_pred EEEEcCCCCCCCCCC-CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCC--------
Q 027642 68 LILLRHAKSSWEFPS-LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFL-------- 138 (220)
Q Consensus 68 i~LiRHGet~~n~~~-~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~-------- 138 (220)
|||||||||.+|..+ .|+.|.|||+.|++||+.+++.|+. .+++.|||||+.||+|||+++++.++ ++
T Consensus 1 i~lvRHg~t~~n~~~~~g~~d~~Lt~~G~~qa~~l~~~l~~--~~~~~i~sSpl~Ra~qTA~~i~~~~~-~~~~~~~~L~ 77 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCYGQTDVPLAEKGAEQAAALREKLAD--VPFDAVYSSPLSRCRELAEILAERRG-LPIIKDPRLR 77 (177)
T ss_pred CEEEeCCCCccCCCceeCCCCCCcChhHHHHHHHHHHHhcC--CCCCEEEECchHHHHHHHHHHHhhcC-CCceECCccc
Confidence 699999999999764 3789999999999999999999986 67899999999999999999987653 11
Q ss_pred cc-----------ce--------eeccccccccCCCCccHHHHHHHHHHhhc-----CCCCeEEEEeChHHHHHHHHHHh
Q 027642 139 EA-----------EV--------HFISSFYSVAAMDGQTAEHLQKAICKYSR-----DEILTVMCMGHNRGWEEAASMFT 194 (220)
Q Consensus 139 ~~-----------~i--------~~~~~l~~~~~p~GEs~~~l~~ri~~~~~-----~~~~~vliVtH~~~i~~ll~~l~ 194 (220)
+. ++ .|..+.....+|+||++.++.+|+..++. ..+++|||||||++|++++.++.
T Consensus 78 E~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~l~~~~~ 157 (177)
T TIGR03162 78 EMDFGDWEGRSWDEIPEAYPELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRALLAHLL 157 (177)
T ss_pred cccCCccCCCCHHHHHHhCHHHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHh
Confidence 00 00 01111112346899999999999877542 25689999999999999999999
Q ss_pred cC------CcccCCceEEEE
Q 027642 195 GA------FIELKTCNAALL 208 (220)
Q Consensus 195 g~------~~~~~~~s~~~l 208 (220)
|. .+.++||++++|
T Consensus 158 ~~~~~~~~~~~~~n~~i~~l 177 (177)
T TIGR03162 158 GLPLEQWWSFDVEYGSITLI 177 (177)
T ss_pred CCCHHHHhccccCCeeEEeC
Confidence 86 357889999874
No 18
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.96 E-value=5.5e-28 Score=191.60 Aligned_cols=138 Identities=20% Similarity=0.213 Sum_probs=116.4
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeec
Q 027642 66 RRLILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFI 145 (220)
Q Consensus 66 ~~i~LiRHGet~~n~~~~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~ 145 (220)
|+|||||||+++++.. ++.|+|||++|++||++++++|++.++.+|.|||||+.||+|||+++++.++ ++ ..+...
T Consensus 1 m~l~LvRHg~a~~~~~--~d~dr~Lt~~G~~qa~~~~~~l~~~~~~~d~i~sSp~~Ra~qTa~~l~~~~~-~~-~~~~~~ 76 (152)
T TIGR00249 1 MQLFIMRHGDAALDAA--SDSVRPLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRAEQTAEIVGDCLN-LP-SSAEVL 76 (152)
T ss_pred CEEEEEeCCCcccccC--CCCCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHHcC-CC-cceEEc
Confidence 5899999999998764 7899999999999999999999987778999999999999999999998874 32 345566
Q ss_pred cccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcC--CcccCCceEEEEEEeC
Q 027642 146 SSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGA--FIELKTCNAALLETTG 212 (220)
Q Consensus 146 ~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~--~~~~~~~s~~~l~~~~ 212 (220)
+.+|. +++..++.+.|+++..+..++++||+|++.|..++.+|++. .+.+++|++++|+++.
T Consensus 77 ~~l~p-----~~~~~~~~~~l~~~~~~~~~~vliVgH~P~i~~l~~~l~~~~~~~~~~~~~~~~l~~~~ 140 (152)
T TIGR00249 77 EGLTP-----CGDIGLVSDYLEALTNEGVASVLLVSHLPLVGYLVAELCPGENPIMFTTGAIASLLWDE 140 (152)
T ss_pred cCcCC-----CCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhCCCCCCcCcceeEEEEEEec
Confidence 67762 24566777777765434567999999999999999999985 5679999999999974
No 19
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.95 E-value=7.2e-27 Score=209.41 Aligned_cols=151 Identities=18% Similarity=0.211 Sum_probs=119.0
Q ss_pred CccCceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCC
Q 027642 61 DQSVARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFL 138 (220)
Q Consensus 61 ~~~~~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~ 138 (220)
...++++|||||||++.+|..+ +|..|.|||+.|++||+.+++.|+... +++.|||||+.||+|||+++++.++ ++
T Consensus 167 ~~~~~~~i~LvRHGet~~n~~~~~~g~~D~~Lt~~G~~QA~~l~~~l~~~~-~~d~i~sSpl~Ra~qTA~~i~~~~~-~~ 244 (372)
T PRK07238 167 ARGTPTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAARG-GIDAVVSSPLQRARDTAAAAAKALG-LD 244 (372)
T ss_pred CCCCceEEEEEeCCCCCcccCCeeeCCCCCCcCHHHHHHHHHHHHHHhccC-CCCEEEECChHHHHHHHHHHHHhcC-CC
Confidence 3457799999999999999764 578899999999999999999998742 6899999999999999999988653 11
Q ss_pred cc------cee---e-----------cccc-------ccccCCCCccHHHHHHHHHHhhc-----CCCCeEEEEeChHHH
Q 027642 139 EA------EVH---F-----------ISSF-------YSVAAMDGQTAEHLQKAICKYSR-----DEILTVMCMGHNRGW 186 (220)
Q Consensus 139 ~~------~i~---~-----------~~~l-------~~~~~p~GEs~~~l~~ri~~~~~-----~~~~~vliVtH~~~i 186 (220)
.. ++. | .++. ....+|+||++.++.+|+..++. ..+++|||||||++|
T Consensus 245 ~~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~vlvVtHg~~i 324 (372)
T PRK07238 245 VTVDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADTSVAPPGGESFDAVARRVRRARDRLIAEYPGATVLVVSHVTPI 324 (372)
T ss_pred cEECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCCCCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEEChHHH
Confidence 00 000 0 0000 12346899999999999876542 345789999999999
Q ss_pred HHHHHHHhcC------CcccCCceEEEEEEeCC
Q 027642 187 EEAASMFTGA------FIELKTCNAALLETTGK 213 (220)
Q Consensus 187 ~~ll~~l~g~------~~~~~~~s~~~l~~~~~ 213 (220)
+.++.++++. .+.++++++++++++.+
T Consensus 325 r~ll~~~l~~~~~~~~~~~~~~~~~s~l~~~~~ 357 (372)
T PRK07238 325 KTLLRLALDAGPGVLYRLHLDLASLSIAEFYPD 357 (372)
T ss_pred HHHHHHHhCCCHHHhhhcccCCceEEEEEEECC
Confidence 9999999986 34689999999999643
No 20
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.95 E-value=1.3e-26 Score=185.03 Aligned_cols=137 Identities=15% Similarity=0.200 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeec
Q 027642 66 RRLILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFI 145 (220)
Q Consensus 66 ~~i~LiRHGet~~n~~~~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~ 145 (220)
|+|||||||++.|+. .+|.|+|||++|++||+.++++|+..++.+|.|||||+.||+|||+++++.++ ++ ..+...
T Consensus 1 m~l~lvRHg~a~~~~--~~d~~rpLt~~G~~qa~~~~~~l~~~~~~~d~i~sSp~~Ra~qTa~~l~~~~~-~~-~~~~~~ 76 (159)
T PRK10848 1 MQVFIMRHGDAALDA--ASDSVRPLTTCGCDESRLMANWLKGQKVDIERVLVSPYLRAEQTLEVVGECLN-LP-ASAEVL 76 (159)
T ss_pred CEEEEEeCCCCCCCC--CCCcCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEECCHHHHHHHHHHHHHHhC-CC-CceEEc
Confidence 579999999999885 37889999999999999999999987778999999999999999999998864 32 234456
Q ss_pred cccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcC-C-cccCCceEEEEEEe
Q 027642 146 SSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGA-F-IELKTCNAALLETT 211 (220)
Q Consensus 146 ~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~-~-~~~~~~s~~~l~~~ 211 (220)
+++|.. .+...+.+.+..+.....++|+||+|+|.|..++..|++. . ..+++|++++|+++
T Consensus 77 ~~l~~~-----~~~~~~~~~l~~~~~~~~~~vllVgH~P~l~~l~~~L~~~~~~~~~~t~~i~~l~~~ 139 (159)
T PRK10848 77 PELTPC-----GDVGLVSAYLQALANEGVASVLVISHLPLVGYLVAELCPGETPPMFTTSAIACVTLD 139 (159)
T ss_pred cCCCCC-----CCHHHHHHHHHHHHhcCCCeEEEEeCcCcHHHHHHHHhCCCCCCCcCCceEEEEEec
Confidence 666643 2233333333332224457999999999999999999864 2 24899999999998
No 21
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.95 E-value=1.6e-26 Score=181.60 Aligned_cols=134 Identities=24% Similarity=0.306 Sum_probs=109.3
Q ss_pred EEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceee
Q 027642 67 RLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHF 144 (220)
Q Consensus 67 ~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~ 144 (220)
+|||||||++.++... .++.|+|||++|++||++++++|...+..++.|||||+.||+|||+++++.+. ..++..
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~~Sp~~Ra~qTa~~l~~~~~---~~~~~~ 77 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAIQTAEIILEELP---GLPVEV 77 (153)
T ss_pred CEEEEECCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHHHHHHHHHHHHhcC---CCCcee
Confidence 4899999999998764 67899999999999999999999987668999999999999999999998752 234555
Q ss_pred ccccccccCCCCccHHHHHHHHHHhhcC-CCCeEEEEeChHHHHHHHHHHhcCC------cccCCceEEEEEEeC
Q 027642 145 ISSFYSVAAMDGQTAEHLQKAICKYSRD-EILTVMCMGHNRGWEEAASMFTGAF------IELKTCNAALLETTG 212 (220)
Q Consensus 145 ~~~l~~~~~p~GEs~~~l~~ri~~~~~~-~~~~vliVtH~~~i~~ll~~l~g~~------~~~~~~s~~~l~~~~ 212 (220)
.+++++ +.+.+.+.++... .+++++||||+++|+.++.++++.. +.+++|++++++++.
T Consensus 78 ~~~L~e---------~R~~~~~~~l~~~~~~~~iliV~H~~~i~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 143 (153)
T cd07067 78 DPRLRE---------ARVLPALEELIAPHDGKNVLIVSHGGVLRALLAYLLGLSDEDILRLNLPNGSISVLELDE 143 (153)
T ss_pred CccchH---------HHHHHHHHHHHHhCCCCeEEEEeChHHHHHHHHHHhCCCHHHHHhcCCCCceEEEEEEeC
Confidence 555554 2333344433322 5689999999999999999999863 579999999999975
No 22
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1e-26 Score=189.72 Aligned_cols=149 Identities=18% Similarity=0.223 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcC------
Q 027642 65 ARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQG------ 136 (220)
Q Consensus 65 ~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~------ 136 (220)
|++|+|+||||++||..+ .||.|.+||++|++||...|+.|++.++.||.+|||-++||++|+.++.+..+.
T Consensus 1 ~~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~~ag~llk~~~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ipv~ 80 (230)
T COG0588 1 MMKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRAIKTLNIVLEESDQLWIPVI 80 (230)
T ss_pred CceEEEEecCchhhhhcCceeeeeecCcchhhHHHHHHHHHHHHHcCCCcceeehHHHHHHHHHHHHHhhhhcccCcchh
Confidence 578999999999999876 799999999999999999999999999999999999999999999999887531
Q ss_pred ---------------C---------CccceeeccccccccCC-------------------------CCccHHHHHHHHH
Q 027642 137 ---------------F---------LEAEVHFISSFYSVAAM-------------------------DGQTAEHLQKAIC 167 (220)
Q Consensus 137 ---------------~---------~~~~i~~~~~l~~~~~p-------------------------~GEs~~~l~~ri~ 167 (220)
+ .++++..+.+-|+..|| .+|+..+..+|+.
T Consensus 81 kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~Rv~ 160 (230)
T COG0588 81 KSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVL 160 (230)
T ss_pred hHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHHhh
Confidence 1 11233333444554444 4489999888886
Q ss_pred Hhhc-------CCCCeEEEEeChHHHHHHHHHHhcC------CcccCCceEEEEEEeCC
Q 027642 168 KYSR-------DEILTVMCMGHNRGWEEAASMFTGA------FIELKTCNAALLETTGK 213 (220)
Q Consensus 168 ~~~~-------~~~~~vliVtH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~~ 213 (220)
.+.. ..+++|+||+||..+|+|+.+|.+. .+.+|+|--.++++|.+
T Consensus 161 Pyw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd~dI~~l~IPtg~Plvyeld~~ 219 (230)
T COG0588 161 PYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKN 219 (230)
T ss_pred HHHHHHhhHHHhCCCeEEEEecchhHHHHHHHHhCCCHHHhhhcccCCCCcEEEEECCC
Confidence 5421 5789999999999999999999986 57899999999999875
No 23
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4.8e-26 Score=188.08 Aligned_cols=150 Identities=23% Similarity=0.316 Sum_probs=122.3
Q ss_pred cCceEEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcC--CC
Q 027642 63 SVARRLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQG--FL 138 (220)
Q Consensus 63 ~~~~~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~--~~ 138 (220)
+..++++|||||||+||.++ +|+.|.+||+.|++||++++++|+..++.++.+||||++||+|||+++.+..+. +|
T Consensus 3 ~~~~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~~~~~~l~~~~~~~~~~~tS~l~RakqT~~~il~~~~~~~~p 82 (214)
T KOG0235|consen 3 SNTFRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDLNIEFDVCYTSDLKRAKQTAELILEELKQKKVP 82 (214)
T ss_pred CcceEEEEEecCchhhhhhCcccccccCccChhhHHHHHHHHHHHHhcCCcccEEecCHHHHHHHHHHHHHHhhccCCcc
Confidence 34689999999999999986 899999999999999999999999999999999999999999999999988641 11
Q ss_pred c----------------------------cce---eeccccccccCCCCccHHHHHHHHHHhhc-------CCCCeEEEE
Q 027642 139 E----------------------------AEV---HFISSFYSVAAMDGQTAEHLQKAICKYSR-------DEILTVMCM 180 (220)
Q Consensus 139 ~----------------------------~~i---~~~~~l~~~~~p~GEs~~~l~~ri~~~~~-------~~~~~vliV 180 (220)
. +++ .....++...+|.|||..++.+|+..+.+ .++.+||||
T Consensus 83 v~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~ 162 (214)
T KOG0235|consen 83 VLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIV 162 (214)
T ss_pred eEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEE
Confidence 0 000 00011233456899999999999866432 467899999
Q ss_pred eChHHHHHHHHHHhcC------CcccCCceEEEEEEeC
Q 027642 181 GHNRGWEEAASMFTGA------FIELKTCNAALLETTG 212 (220)
Q Consensus 181 tH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~ 212 (220)
+||.++|+++.++.|. .+.++++-..+++++.
T Consensus 163 aHGnsLR~i~~~l~g~s~~~i~~~~~~t~vp~v~~ld~ 200 (214)
T KOG0235|consen 163 AHGNSLRAIVKHLEGISDEAIKELNLPTGVPIVYELDK 200 (214)
T ss_pred cCcHHHHHHHHHHhcCCHhhhhheecccCCceEEEccc
Confidence 9999999999999986 4578888888888875
No 24
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.93 E-value=5.5e-25 Score=191.87 Aligned_cols=146 Identities=18% Similarity=0.140 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCHhHHHHHHHHHHHHHhCC------CCcCEEEEcchHHHHHHHHHHHHHhcCCCc
Q 027642 66 RRLILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQLG------WIPQLILSSDAVRTRQTLEIMQQHVQGFLE 139 (220)
Q Consensus 66 ~~i~LiRHGet~~n~~~~g~~d~pLt~~G~~qA~~l~~~L~~~~------~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~ 139 (220)
++||||||||+.++. ...+.+.+||+.|++||++++++|++.. .+++.|||||+.||+|||++|++.+..+
T Consensus 103 ~~L~LVRHGq~~~~~-~~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d~IysSPL~RA~qTAeiIa~~~~~~-- 179 (299)
T PTZ00122 103 RQIILVRHGQYINES-SNDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKETAEIISEAFPGV-- 179 (299)
T ss_pred eEEEEEECCCCCCCC-CCCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCCEEEEcCcHHHHHHHHHHHHhCCCC--
Confidence 999999999976542 1112235599999999999999999742 2689999999999999999999865322
Q ss_pred cceeecccc------------ccccCCCCccHHHHHHHHHHhh----c----CCCCeEEEEeChHHHHHHHHHHhcC---
Q 027642 140 AEVHFISSF------------YSVAAMDGQTAEHLQKAICKYS----R----DEILTVMCMGHNRGWEEAASMFTGA--- 196 (220)
Q Consensus 140 ~~i~~~~~l------------~~~~~p~GEs~~~l~~ri~~~~----~----~~~~~vliVtH~~~i~~ll~~l~g~--- 196 (220)
++..++++ ..+.++++|+ .++.+|+.+++ . ...+++||||||++|+.++..+++.
T Consensus 180 -~v~~d~~LrEG~~~~~~~~~~~~~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVVsHGgvIR~ll~~lLglp~~ 257 (299)
T PTZ00122 180 -RLIEDPNLAEGVPCAPDPPSRGFKPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIVCHGNVIRYLVCRALQLPPE 257 (299)
T ss_pred -CceeCcccccCCccccCccccccCCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEEeCChHHHHHHHHHhCcCHH
Confidence 22222222 1122334444 55566655432 1 1235689999999999999999986
Q ss_pred ---CcccCCceEEEEEEeC-Ccce
Q 027642 197 ---FIELKTCNAALLETTG-KSWE 216 (220)
Q Consensus 197 ---~~~~~~~s~~~l~~~~-~~W~ 216 (220)
.+.++||++++|++++ +.|.
T Consensus 258 ~~~~~~~~N~sit~l~~~~~g~~~ 281 (299)
T PTZ00122 258 AWLRLSLYNCGITWIVISSEGHVS 281 (299)
T ss_pred HHhhccCCCceEEEEEEeCCCcEE
Confidence 3568999999999964 3443
No 25
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.93 E-value=1.5e-25 Score=175.75 Aligned_cols=123 Identities=23% Similarity=0.296 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcC-------C
Q 027642 67 RLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQG-------F 137 (220)
Q Consensus 67 ~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~-------~ 137 (220)
+|||||||++.+|..+ .++.|.|||+.|++||+.+++.|.+....++.|||||+.||+|||+++++.++. +
T Consensus 1 ~i~liRHg~~~~n~~~~~~~~~d~~Lt~~G~~qA~~~~~~l~~~~~~~~~i~~Sp~~R~~qTA~~~~~~~~~~~~~~~~l 80 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRVQGDSDPPLTERGREQARQLGEYLAERDIQIDVIYSSPLRRCIQTAEIIAEGLGIEIIVDPRL 80 (158)
T ss_dssp EEEEEE-S-BHHHHTTBCGTTSSTGBEHHHHHHHHHHHHHHHHTTSSCSEEEEESSHHHHHHHHHHHHHHTSEEEEEGGG
T ss_pred CEEEEECCccccccCCCcCCCCCccccHHHHHHHHhhcccccccccCceEEecCCcchhhhhhchhhccccccccccccc
Confidence 6999999999988654 577788999999999999999999767889999999999999999999987541 1
Q ss_pred Cccce--------------------eeccccccccCCCCccHHHHHHHHHHhh------cCCCCeEEEEeChHHHHHH
Q 027642 138 LEAEV--------------------HFISSFYSVAAMDGQTAEHLQKAICKYS------RDEILTVMCMGHNRGWEEA 189 (220)
Q Consensus 138 ~~~~i--------------------~~~~~l~~~~~p~GEs~~~l~~ri~~~~------~~~~~~vliVtH~~~i~~l 189 (220)
.+... .|....+...+|+||+..++.+|+..++ ...+++|+|||||++|++|
T Consensus 81 ~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 81 REIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIAYKRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp SCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HHHHHHH
T ss_pred ccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHhC
Confidence 11000 0111223345678999999999986643 2578899999999999975
No 26
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.92 E-value=4.1e-25 Score=174.52 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhC-CCCcCEEEEcchHHHHHHHHHHHHHhcC------C
Q 027642 67 RLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQL-GWIPQLILSSDAVRTRQTLEIMQQHVQG------F 137 (220)
Q Consensus 67 ~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~-~~~~~~i~sSpl~Ra~qTA~~l~~~~~~------~ 137 (220)
+|||||||++.+|... .|..|.|||+.|++||++++++|+.. ...++.|||||+.||+|||+++++.++. +
T Consensus 1 ~i~lvRHG~s~~n~~~~~~g~~d~~Lt~~G~~qa~~~a~~l~~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~L 80 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLGRLRFDVIYSSPLLRARETAEALAIALGLGEVDPRL 80 (155)
T ss_pred CEEEEeCCCCcccccCeEcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCCEEEeCchHHHHHHHHHHHHhcCCCCCChhh
Confidence 4899999999998653 45599999999999999999999875 3678999999999999999999877531 1
Q ss_pred Cccce------e----------eccccccccCCCCccHHHHHHHHHHhhc----C---CCCeEEEEeChHHHHHH
Q 027642 138 LEAEV------H----------FISSFYSVAAMDGQTAEHLQKAICKYSR----D---EILTVMCMGHNRGWEEA 189 (220)
Q Consensus 138 ~~~~i------~----------~~~~l~~~~~p~GEs~~~l~~ri~~~~~----~---~~~~vliVtH~~~i~~l 189 (220)
.+..+ . .....+...+|+||+..++..|+..++. . ..++|||||||++|+++
T Consensus 81 ~E~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~~ 155 (155)
T smart00855 81 RERDYGAWEGLTKEEERAKAWTRPADWLGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRAL 155 (155)
T ss_pred hhcccceecCCcHHHHHHHHHHHHhccCCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCcccccC
Confidence 11000 0 0011234456889999999999876542 1 56789999999999863
No 27
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.92 E-value=1.1e-24 Score=208.29 Aligned_cols=162 Identities=14% Similarity=0.090 Sum_probs=118.1
Q ss_pred cceeeecccCCCCCCccCceEEEEEcCCCCCCCCCCCCCCCCCCCHhHHHHHHHHHHHHHhC-CCCcCEEEEcchHHHHH
Q 027642 47 QSLVIETNVTGTAEDQSVARRLILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQL-GWIPQLILSSDAVRTRQ 125 (220)
Q Consensus 47 ~s~~~~~~~~~~~~~~~~~~~i~LiRHGet~~n~~~~g~~d~pLt~~G~~qA~~l~~~L~~~-~~~~~~i~sSpl~Ra~q 125 (220)
++.++...++-+... |+|||+|||||.||..+.-..|.|||+.|++||++++++|++. ...++.|||||+.||+|
T Consensus 405 ~~~i~~~l~n~~~~~----m~i~LiRHGeT~~n~~~r~~Gd~pLt~~G~~qA~~l~~~l~~~~~~~~~~V~sSpl~Ra~~ 480 (664)
T PTZ00322 405 PSRLAYMLHNLNPTP----MNLYLTRAGEYVDLLSGRIGGNSRLTERGRAYSRALFEYFQKEISTTSFTVMSSCAKRCTE 480 (664)
T ss_pred chhhheeeeeeccCC----ceEEEEecccchhhhcCccCCCCccCHHHHHHHHHHHHHHHhccCCCCcEEEcCCcHHHHH
Confidence 333444445544432 6899999999999987621238899999999999999999874 34568999999999999
Q ss_pred HHHHHHHH-----------------hc-------CCCc-----------cce---------eeccccccccCCCCccHHH
Q 027642 126 TLEIMQQH-----------------VQ-------GFLE-----------AEV---------HFISSFYSVAAMDGQTAEH 161 (220)
Q Consensus 126 TA~~l~~~-----------------~~-------~~~~-----------~~i---------~~~~~l~~~~~p~GEs~~~ 161 (220)
||+++.+. ++ .+.+ .++ .|..+.+.+.+|+|||+.+
T Consensus 481 TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~L~Ei~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d 560 (664)
T PTZ00322 481 TVHYFAEESILQQSTASAASSQSPSLNCRVLYFPTLDDINHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQ 560 (664)
T ss_pred HHHHHHhccccccccccccccccccccccccchhhhCcCCCcccCCCCHHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHH
Confidence 99999753 10 0100 000 1222334556789999999
Q ss_pred HH-HHHHHhhc---CCCCeEEEEeChHHHHHHHHHHhcC-----------CcccCCceEEEEEEeC
Q 027642 162 LQ-KAICKYSR---DEILTVMCMGHNRGWEEAASMFTGA-----------FIELKTCNAALLETTG 212 (220)
Q Consensus 162 l~-~ri~~~~~---~~~~~vliVtH~~~i~~ll~~l~g~-----------~~~~~~~s~~~l~~~~ 212 (220)
+. +|+..++. ...++||||+||++|++++.++++. .+.+++++++.|++.+
T Consensus 561 ~~~~R~~~~i~~l~~~~~~ilvVsHg~vir~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 626 (664)
T PTZ00322 561 VFNARLEPHIHDIQASTTPVLVVSHLHLLQGLYSYFVTDGDNIVAPQNAYKIDIPFEHVIKIRMVG 626 (664)
T ss_pred HHHHHHHHHHHHHHccCCCEEEEeCcHHHHHHHHHHhcCCccccCcccCceeeccCCcEEEEEEec
Confidence 66 68766542 3457899999999999999999873 3568999999998864
No 28
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.92 E-value=9.4e-24 Score=164.82 Aligned_cols=132 Identities=20% Similarity=0.159 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCCCCCC--CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceee
Q 027642 67 RLILLRHAKSSWEFPS--LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHF 144 (220)
Q Consensus 67 ~i~LiRHGet~~n~~~--~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~ 144 (220)
+|||||||++.++..+ .++.|.|||++|++||..++++|++....++.|||||+.||+|||+++++.+. ...++..
T Consensus 1 ~i~liRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~~~~~~~v~sSp~~R~~~Ta~~~~~~~~--~~~~~~~ 78 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAIQTAEIILEGLF--EGLPVEV 78 (153)
T ss_pred CEEEEeCCCCccccCCCccCCCCCCcCHHHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHHHHHHhc--CCCCeEE
Confidence 4899999999998765 58999999999999999999999986557899999999999999999998862 1122333
Q ss_pred ccccccccCCCCccHHHHHHHHHHhhc---CCCCeEEEEeChHHHHHHHHHHhcCC------cccCCceEEEEEEeC
Q 027642 145 ISSFYSVAAMDGQTAEHLQKAICKYSR---DEILTVMCMGHNRGWEEAASMFTGAF------IELKTCNAALLETTG 212 (220)
Q Consensus 145 ~~~l~~~~~p~GEs~~~l~~ri~~~~~---~~~~~vliVtH~~~i~~ll~~l~g~~------~~~~~~s~~~l~~~~ 212 (220)
.++ ..+.+.+.+... ...+++++|||+++|+.++.++++.. +.+++|++.+++++.
T Consensus 79 ~~~------------~r~~~~~~~~~~~~~~~~~~iliv~H~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (153)
T cd07040 79 DPR------------ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEILSLNLPNGSILVLELDE 143 (153)
T ss_pred CHH------------HHHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHhCcCHHHhccccCCCCceEEEEEcC
Confidence 222 233333333322 25689999999999999999999862 578999999999875
No 29
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.91 E-value=3.3e-23 Score=175.23 Aligned_cols=131 Identities=16% Similarity=0.143 Sum_probs=102.4
Q ss_pred CCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcC--CCc------ccee-----------
Q 027642 83 LRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQG--FLE------AEVH----------- 143 (220)
Q Consensus 83 ~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~--~~~------~~i~----------- 143 (220)
+|+.|.|||++|++||+++++.|+..+++|+.|||||+.||+|||+++++.++. ++. .++.
T Consensus 8 qG~~D~pLTe~G~~QA~~l~~~L~~~~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~L~E~~~G~~EG~~~~e 87 (236)
T PTZ00123 8 TGWTDVPLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLNERHYGALQGLNKSE 87 (236)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcCCCCCCceeCchhhhcccccccCCCHHH
Confidence 788999999999999999999999777789999999999999999999876431 110 0000
Q ss_pred ------------eccccc------------------------cccCCCCccHHHHHHHHHHhhc-------CCCCeEEEE
Q 027642 144 ------------FISSFY------------------------SVAAMDGQTAEHLQKAICKYSR-------DEILTVMCM 180 (220)
Q Consensus 144 ------------~~~~l~------------------------~~~~p~GEs~~~l~~ri~~~~~-------~~~~~vliV 180 (220)
|.+... ...+|+|||+.++.+|+..++. ..+++||||
T Consensus 88 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~~~~~~vliV 167 (236)
T PTZ00123 88 TAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVA 167 (236)
T ss_pred HHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 000000 1124789999999999876431 346789999
Q ss_pred eChHHHHHHHHHHhcC------CcccCCceEEEEEEeCC
Q 027642 181 GHNRGWEEAASMFTGA------FIELKTCNAALLETTGK 213 (220)
Q Consensus 181 tH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~~ 213 (220)
|||++|++++.++++. .+.+++|++++|+++++
T Consensus 168 sHG~vir~ll~~l~~~~~~~~~~~~~~n~~~~~~~~~~~ 206 (236)
T PTZ00123 168 AHGNSLRALVKYLDKMSEEDILELNIPTGVPLVYELDEN 206 (236)
T ss_pred eCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCC
Confidence 9999999999999986 35799999999999865
No 30
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.89 E-value=2.4e-22 Score=165.04 Aligned_cols=131 Identities=17% Similarity=0.110 Sum_probs=96.7
Q ss_pred ceEEEEEcCCCC-CCCCC-CCCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccce
Q 027642 65 ARRLILLRHAKS-SWEFP-SLRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEV 142 (220)
Q Consensus 65 ~~~i~LiRHGet-~~n~~-~~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i 142 (220)
.++||||||||+ .|... ...|. +|||++|++||++++++|++..+ .|.|||||+.||+|||+++++. .++
T Consensus 54 ~~~L~LiRHGet~~~~~~~~~sD~-RpLTerG~~qA~~lg~~L~~~~~-~d~I~sSpa~Ra~qTAe~ia~~------~~v 125 (201)
T PRK15416 54 HPVVVLFRHAERCDRSDNQCLSDK-TGITVKGTQDARELGKAFSADIP-DYDLYSSNTVRTIQSATWFSAG------KKL 125 (201)
T ss_pred CCEEEEEeCccccCccCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCC-CCEEEECCCHHHHHHHHHHhcC------CCc
Confidence 377999999999 55422 23333 89999999999999999987543 3899999999999999999762 346
Q ss_pred eeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEEEEEEe
Q 027642 143 HFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAALLETT 211 (220)
Q Consensus 143 ~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~~l~~~ 211 (220)
.+++++|+.. .+..+.+.+.+++ ..+++||||+|++.|..++..+.+.. ++++.+..+.++
T Consensus 126 ~~~~~Lye~~---~~~~~~i~~~i~~---~~~~tVLIVGHnp~i~~La~~~~~~~--~~~~~~~~l~~~ 186 (201)
T PRK15416 126 TVDKRLSDCG---NGIYSAIKDLQRK---SPDKNIVIFTHNHCLTYIAKDKRGVK--FKPDYLDALVMH 186 (201)
T ss_pred EecHHHhhcC---chhHHHHHHHHHh---CCCCEEEEEeCchhHHHHHHHhcCCC--CCCCceEEEEEE
Confidence 7778888652 2233334455554 23489999999999999999877554 555555555554
No 31
>PRK06193 hypothetical protein; Provisional
Probab=99.89 E-value=4.1e-22 Score=164.76 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCCCCCC--CCCC-----CCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCC
Q 027642 66 RRLILLRHAKSSWEFPS--LRDH-----DRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFL 138 (220)
Q Consensus 66 ~~i~LiRHGet~~n~~~--~g~~-----d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~ 138 (220)
..|||||||++++|..+ .++. |+|||++|++||.+++++|++.++.||.|||||+.||+|||+++....+ .
T Consensus 43 ~~L~LvRHGet~~n~~~~~~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~~~~~d~V~sSpl~Ra~qTA~il~~~~~-~- 120 (206)
T PRK06193 43 GYVIYFRHAATDRSQADQDTSDMDDCSTQRNLSEEGREQARAIGEAFRALAIPVGKVISSPYCRAWETAQLAFGRHE-K- 120 (206)
T ss_pred CEEEEEeCccCCCCccCCcccccccCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhcccc-c-
Confidence 78999999999887653 3444 6899999999999999999988888999999999999999999874432 1
Q ss_pred ccceeeccccccccCCCCccHHHHHHHHHHhh---cCCCCeEEEEeChHHHHHHHHHHhc
Q 027642 139 EAEVHFISSFYSVAAMDGQTAEHLQKAICKYS---RDEILTVMCMGHNRGWEEAASMFTG 195 (220)
Q Consensus 139 ~~~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~---~~~~~~vliVtH~~~i~~ll~~l~g 195 (220)
++. -.++....+.+|+.+.+.+++.+++ .+..+++|||+|+++|+.++..+.+
T Consensus 121 --~~~--l~~~~~~~~~~~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp~i~~l~g~~~~ 176 (206)
T PRK06193 121 --EIR--LNFLNSEPVPAERNALLKAGLRPLLTTPPDPGTNTVLVGHDDNLEAATGIYPE 176 (206)
T ss_pred --Ccc--cccccccCCChhhHHHHHHHHHHHHhhCCCCCCeEEEEeCchHHHHHhCCCCc
Confidence 110 1111111224556666556655543 2567799999999999999987755
No 32
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=99.77 E-value=6.5e-18 Score=138.10 Aligned_cols=143 Identities=20% Similarity=0.265 Sum_probs=100.0
Q ss_pred CceEEEEEcCCCCCCCCCCCCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccce-
Q 027642 64 VARRLILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEV- 142 (220)
Q Consensus 64 ~~~~i~LiRHGet~~n~~~~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i- 142 (220)
..+.|+||||||.... ++.+ .||+.|++||+..|+.|++.+++||.|+.|.+.||.+||.+|.+++.+ +...+
T Consensus 93 atRhI~LiRHgeY~~~----g~~~-hLTelGReQAE~tGkRL~elglk~d~vv~StM~RA~ETadIIlk~l~d-~lk~~s 166 (284)
T KOG4609|consen 93 ATRHIFLIRHGEYHVD----GSLE-HLTELGREQAELTGKRLAELGLKFDKVVASTMVRATETADIILKHLPD-DLKRVS 166 (284)
T ss_pred hhceEEEEeccceecc----Cchh-hcchhhHHHHHHHhHHHHHcCCchhhhhhhhhhhhHHHHHHHHHhCCC-ccceec
Confidence 5689999999997533 2333 799999999999999999999999999999999999999999999751 11111
Q ss_pred -eec--cccccccCC-------------CCccHHHHHHH-HHHhh--cCCCCeEEEEeChHHHHHHHHHHhcC------C
Q 027642 143 -HFI--SSFYSVAAM-------------DGQTAEHLQKA-ICKYS--RDEILTVMCMGHNRGWEEAASMFTGA------F 197 (220)
Q Consensus 143 -~~~--~~l~~~~~p-------------~GEs~~~l~~r-i~~~~--~~~~~~vliVtH~~~i~~ll~~l~g~------~ 197 (220)
.+. ...|.-.|| +|...+....+ +.+.. ++++.=.|||+|++|||.+++..+.. +
T Consensus 167 ~~ll~EGaP~ppdPp~k~wrp~~~qy~rdgaRIEaafRryfhRA~p~QeedSy~liV~HaNVIRY~icRALq~PpegWlR 246 (284)
T KOG4609|consen 167 CPLLREGAPYPPDPPVKHWRPLDPQYYRDGARIEAAFRRYFHRASPSQEEDSYELIVCHANVIRYFICRALQFPPEGWLR 246 (284)
T ss_pred ccccccCCCCCCCCCcccCCccChHhhhcchHHHHHHHHHHhhcCcccccccEEEEEeecchhhhhhhhhhcCCcchhhe
Confidence 011 111221122 12222211111 11111 14455689999999999999977764 5
Q ss_pred cccCCceEEEEEEeC
Q 027642 198 IELKTCNAALLETTG 212 (220)
Q Consensus 198 ~~~~~~s~~~l~~~~ 212 (220)
+++.+||++-|.+..
T Consensus 247 ~nlnh~SiTWlti~P 261 (284)
T KOG4609|consen 247 MNLNHCSITWLTISP 261 (284)
T ss_pred ecccCcceEEEEEcc
Confidence 789999999998864
No 33
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.7e-17 Score=148.61 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=128.4
Q ss_pred CcceeeecccCCCCCCccCceEEEEEcCCCCCCCCCCCCCCCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHH
Q 027642 46 SQSLVIETNVTGTAEDQSVARRLILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQ 125 (220)
Q Consensus 46 ~~s~~~~~~~~~~~~~~~~~~~i~LiRHGet~~n~~~~g~~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~q 125 (220)
-+|.++...++....+ ++|||.|||+++.|..+....|++|+++|.+-|+.+++++.+....--.||||+..||+|
T Consensus 224 l~srivy~lmN~~~~p----R~i~l~r~geS~~n~~griggds~ls~~g~~ya~~l~~f~~~~~~~dl~vwts~~~rti~ 299 (438)
T KOG0234|consen 224 LQSRIVYYLMNIHTTP----RTIYLTRHGESEFNVEGRIGGDSPLSERGSQYAKSLIKFVEEQSSSDLDVWTSQRKRTIQ 299 (438)
T ss_pred ehhhhhhhhhccccCC----ceEEEEecCCCccccccccCCcccccHHHHHHHHHHHHHHhhhcccCceeccchHHHHhh
Confidence 4566666677755544 899999999999999988889999999999999999999988754334899999999999
Q ss_pred HHHHHHHHh-----cCCCc-----------cce---------eeccccccccCCCCccHHHHHHHHHHhhc--CCCCeEE
Q 027642 126 TLEIMQQHV-----QGFLE-----------AEV---------HFISSFYSVAAMDGQTAEHLQKAICKYSR--DEILTVM 178 (220)
Q Consensus 126 TA~~l~~~~-----~~~~~-----------~~i---------~~~~~l~~~~~p~GEs~~~l~~ri~~~~~--~~~~~vl 178 (220)
||+.+.... ..+.+ ++| ....+.|.+..|+||++.|+..|++..+. +...+|+
T Consensus 300 ta~~l~~~~~~~~~~~Ldei~ag~~~g~t~eeI~~~~p~e~~~r~~dky~yry~~gESy~D~v~RlePvImElEr~~~Vl 379 (438)
T KOG0234|consen 300 TAEGLKLDYSVEQWKALDEIDAGVCEGLTYEEIETNYPEEFALRDKDKYRYRYPGGESYSDLVQRLEPVIMELERQENVL 379 (438)
T ss_pred hHhhcCcchhhhhHhhcCcccccccccccHHHHHHhCchhhhhccCCcceeecCCCCCHHHHHHhhhhHhHhhhhcccEE
Confidence 999664221 00111 111 12334566777899999999999986532 4556699
Q ss_pred EEeChHHHHHHHHHHhcC------CcccCCceEEEEEEeC--Ccceec
Q 027642 179 CMGHNRGWEEAASMFTGA------FIELKTCNAALLETTG--KSWEEV 218 (220)
Q Consensus 179 iVtH~~~i~~ll~~l~g~------~~~~~~~s~~~l~~~~--~~W~~~ 218 (220)
|++|..+|++++.++++. .+.+|-.++.+++.+. ..|...
T Consensus 380 vi~Hqavircll~Yf~~~~~~e~p~l~~plhtv~~l~~~~y~~~~e~~ 427 (438)
T KOG0234|consen 380 VITHQAVIRCLLAYFLNCSPVELPYLTVPLHTVIKLTPDAYGTTVESI 427 (438)
T ss_pred EEecHHHHHHHHHHHhcCCHhhcccccccceeEEEEeeccccceeEEe
Confidence 999999999999999986 3578888888888653 345543
No 34
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=6.6e-15 Score=120.38 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=65.3
Q ss_pred CCCCCccCceEEEEEcCCCCCCCCCC---------CCCCCCCCCHhHHHHHHHHHHHHHhCCCC--cCEEEEcchHHHHH
Q 027642 57 GTAEDQSVARRLILLRHAKSSWEFPS---------LRDHDRPLSKAGQDDAIKVSQRLQQLGWI--PQLILSSDAVRTRQ 125 (220)
Q Consensus 57 ~~~~~~~~~~~i~LiRHGet~~n~~~---------~g~~d~pLt~~G~~qA~~l~~~L~~~~~~--~~~i~sSpl~Ra~q 125 (220)
....+....++|||+||||..+|..+ ..+.|..||+.|++|+..+++.+...+++ ++.|++||+.||.|
T Consensus 6 i~l~t~~r~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLq 85 (248)
T KOG4754|consen 6 IGLYTKNRCKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQ 85 (248)
T ss_pred cCccccCcceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCceeEEEechHHHHHH
Confidence 33445556799999999999988764 13469999999999999999999887776 99999999999999
Q ss_pred HHHHHHHHh
Q 027642 126 TLEIMQQHV 134 (220)
Q Consensus 126 TA~~l~~~~ 134 (220)
|+.+.....
T Consensus 86 T~v~~f~~~ 94 (248)
T KOG4754|consen 86 TMVIAFGGY 94 (248)
T ss_pred HHHHHhcce
Confidence 999887553
No 35
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.6e-14 Score=121.81 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=85.1
Q ss_pred CCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeecccc-----------------
Q 027642 86 HDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSF----------------- 148 (220)
Q Consensus 86 ~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l----------------- 148 (220)
.|+|||..|.-|++..|+.|.+.++.++.|||||..||+|||..+.+.++......+..++.+
T Consensus 66 ~d~pit~~g~~~~~~~gr~l~~a~~~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is 145 (272)
T KOG3734|consen 66 IDPPITVSGFIQCKLIGRELLNAGIAIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFIS 145 (272)
T ss_pred cCCCccchhHHHHHHHHHHHHhcCCCcceeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCcCC
Confidence 689999999999999999999999999999999999999999999988751000111111111
Q ss_pred ------------------ccccCCCCccHHHHHHHHHHhh-----cCCCCeEEEEeChHHHHHHHHHHhcC
Q 027642 149 ------------------YSVAAMDGQTAEHLQKAICKYS-----RDEILTVMCMGHNRGWEEAASMFTGA 196 (220)
Q Consensus 149 ------------------~~~~~p~GEs~~~l~~ri~~~~-----~~~~~~vliVtH~~~i~~ll~~l~g~ 196 (220)
|...+-.+|+.+++.+|+...+ .-+++++|||+||..+...-+.|.|.
T Consensus 146 ~~el~~~~~~VD~~y~P~~~~~~~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~sv~~~~~~l~~~ 216 (272)
T KOG3734|consen 146 PDELKFPGFPVDLNYDPVYKETPRWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQGL 216 (272)
T ss_pred HHHHhccCCCcccccchhhhhcccccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccchHHHHHHHhcCC
Confidence 1112335799999999876532 24567799999999999999999774
No 36
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=98.22 E-value=2.1e-06 Score=72.34 Aligned_cols=60 Identities=23% Similarity=0.205 Sum_probs=50.2
Q ss_pred eEEEEEcCCCCCCCCCCCCCCCCCCCHhHHHHHHHHHHHHHhCCC----------CcCEEEEcchHHHHHHHHHHHHHh
Q 027642 66 RRLILLRHAKSSWEFPSLRDHDRPLSKAGQDDAIKVSQRLQQLGW----------IPQLILSSDAVRTRQTLEIMQQHV 134 (220)
Q Consensus 66 ~~i~LiRHGet~~n~~~~g~~d~pLt~~G~~qA~~l~~~L~~~~~----------~~~~i~sSpl~Ra~qTA~~l~~~~ 134 (220)
+.++++|||+-.. ..||+.|++|+..+|++|++.-. ..-.+++|+..||+|||+.+...+
T Consensus 4 ~v~~~~RHg~r~p---------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl 73 (242)
T cd07061 4 QVQVLSRHGDRYP---------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGL 73 (242)
T ss_pred EEEEEEecCCCCc---------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHHHHhc
Confidence 5689999999652 57999999999999999987321 122699999999999999999876
No 37
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=96.92 E-value=0.0029 Score=55.02 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=38.1
Q ss_pred CCHhHHHHHHHHHHHHHhCC--C-------CcCEEEEcchHHHHHHHHHHHHHh
Q 027642 90 LSKAGQDDAIKVSQRLQQLG--W-------IPQLILSSDAVRTRQTLEIMQQHV 134 (220)
Q Consensus 90 Lt~~G~~qA~~l~~~L~~~~--~-------~~~~i~sSpl~Ra~qTA~~l~~~~ 134 (220)
||+.|.+|...+|++|++.- + .--.|+||...||++||+.+...+
T Consensus 63 LT~~G~~q~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af~~Gl 116 (347)
T PF00328_consen 63 LTPRGMEQHYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAFLQGL 116 (347)
T ss_dssp BTHHHHHHHHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHHHHHH
Confidence 99999999999999998742 1 112599999999999999998776
No 38
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=96.03 E-value=0.032 Score=51.08 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCCCC-CC--C-------C-CCCCCCCCCHhHHHHHHHHHHHHHh---CCC-------CcC--EEEEcch
Q 027642 64 VARRLILLRHAKSSW-EF--P-------S-LRDHDRPLSKAGQDDAIKVSQRLQQ---LGW-------IPQ--LILSSDA 120 (220)
Q Consensus 64 ~~~~i~LiRHGet~~-n~--~-------~-~g~~d~pLt~~G~~qA~~l~~~L~~---~~~-------~~~--~i~sSpl 120 (220)
-.....+.|||.-.- +. . . .+..--.||+.|.+|+.+||++|++ ... ..+ .|.||+.
T Consensus 34 Lefv~~i~RHGdRaP~~~~yp~dp~~~~~~~~~G~GqLT~~G~~Q~~~LG~~LR~rYvr~~~fL~~~y~~~ev~iRStd~ 113 (411)
T KOG3720|consen 34 LEFVQVIFRHGDRAPVDTPYPLDPFKEEDFWPRGWGQLTDRGMEQMFELGRFLRKRYVRYGNFLSPKYNPKEVYIRSTDV 113 (411)
T ss_pred eEEEEEEeecCCCCcccCCCCCCcccccccCCCCcchhhHHHHHHHHHHHHHHHHHHhhccccCCcccCcceEEEecCCc
Confidence 347778899997321 11 0 0 1122345999999999999999998 311 111 4889999
Q ss_pred HHHHHHHHHHHHHh
Q 027642 121 VRTRQTLEIMQQHV 134 (220)
Q Consensus 121 ~Ra~qTA~~l~~~~ 134 (220)
.||+.||+.+...+
T Consensus 114 nRtl~SAqs~laGl 127 (411)
T KOG3720|consen 114 NRTLMSAQSVLAGL 127 (411)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999999988765
No 39
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=95.94 E-value=0.049 Score=49.95 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCC---CCCCC------CCC-----CCCCCCCHhHHHHHHHHHHHHHhC----CCC-------c--CEEE
Q 027642 64 VARRLILLRHAKS---SWEFP------SLR-----DHDRPLSKAGQDDAIKVSQRLQQL----GWI-------P--QLIL 116 (220)
Q Consensus 64 ~~~~i~LiRHGet---~~n~~------~~g-----~~d~pLt~~G~~qA~~l~~~L~~~----~~~-------~--~~i~ 116 (220)
-.+.++|.|||-- ..+.. ... -..-.||.+|.++...+|+++++. ++- + -.++
T Consensus 31 L~~vvilsRHg~R~P~~~~~~~l~~~t~~~Wp~w~~~~G~LT~~G~~~~~~~G~~~r~~~~~~~ll~~~~cp~~~~v~~~ 110 (413)
T PRK10173 31 LQQVLMMSRHNLRAPLANNGSVLEQSTPNAWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAQQGLVKSGECPPPDTVYAY 110 (413)
T ss_pred EEEEEEEeecccCCCCCCcchhhhhcCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCeEEEE
Confidence 3477999999962 11110 011 133459999999999999977752 211 1 2588
Q ss_pred EcchHHHHHHHHHHHHHh
Q 027642 117 SSDAVRTRQTLEIMQQHV 134 (220)
Q Consensus 117 sSpl~Ra~qTA~~l~~~~ 134 (220)
+++..|+++||+.+...+
T Consensus 111 a~~~~RT~~Sa~afl~Gl 128 (413)
T PRK10173 111 ANSLQRTVATAQFFITGA 128 (413)
T ss_pred eCCchHHHHHHHHHHHhc
Confidence 999999999999987664
No 40
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=95.57 E-value=0.073 Score=49.07 Aligned_cols=71 Identities=17% Similarity=0.069 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCC---CCC---C--CCCC-----CCCCCCHhHHHHHHHHHHHHHhCC----CC-------cC--EEEE
Q 027642 64 VARRLILLRHAKSS---WEF---P--SLRD-----HDRPLSKAGQDDAIKVSQRLQQLG----WI-------PQ--LILS 117 (220)
Q Consensus 64 ~~~~i~LiRHGet~---~n~---~--~~g~-----~d~pLt~~G~~qA~~l~~~L~~~~----~~-------~~--~i~s 117 (220)
-.+.++|.|||--. .+. . ...| ..-.||++|.+|...+|+++++.. +- .+ .|++
T Consensus 34 L~~Vvil~RHG~RaP~~~~~~~~~~t~~~w~~W~~~~GqLT~~G~~~~~~lG~~lR~rY~~~~lL~~~~c~~~~~v~v~a 113 (436)
T PRK10172 34 LESVVIVSRHGVRAPTKATQLMQDVTPDAWPQWPVKLGWLTPRGGELVTLLGHYQRQRLVADGLLAAKGCPQPGQVAAIA 113 (436)
T ss_pred EEEEEEEeeCCCCCCCCCCcccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEe
Confidence 34668899999621 111 0 1122 235699999999999999888632 11 11 5788
Q ss_pred cchHHHHHHHHHHHHHh
Q 027642 118 SDAVRTRQTLEIMQQHV 134 (220)
Q Consensus 118 Spl~Ra~qTA~~l~~~~ 134 (220)
++..||+.||+.+...+
T Consensus 114 ~~~~RTi~SAqafl~Gl 130 (436)
T PRK10172 114 DVDQRTRKTGEAFLAGL 130 (436)
T ss_pred CCchHHHHHHHHHHHhc
Confidence 88899999999887664
No 41
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=94.10 E-value=0.084 Score=51.32 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=38.9
Q ss_pred CCCHhHHHHHHHHHHHHHhCCC---------------CcCEEEEcchHHHHHHHHHHHHHh
Q 027642 89 PLSKAGQDDAIKVSQRLQQLGW---------------IPQLILSSDAVRTRQTLEIMQQHV 134 (220)
Q Consensus 89 pLt~~G~~qA~~l~~~L~~~~~---------------~~~~i~sSpl~Ra~qTA~~l~~~~ 134 (220)
.||..|+-||+.||++|+..-. .--.||+|+-.|.+.||+++++.+
T Consensus 511 elT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgL 571 (1018)
T KOG1057|consen 511 ELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGL 571 (1018)
T ss_pred EecchhHhhHHHHHHHHHhcCCCCCCcceeeehhhhhccceeEecCcchHHHHHHHHHHHH
Confidence 5899999999999999987321 112699999999999999999876
No 42
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=66.60 E-value=15 Score=30.91 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=26.9
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEA 189 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~l 189 (220)
+-++.+.+.+.+.++..+.+.++++|||.+.+...
T Consensus 174 D~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 174 DSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 44677888888877655567899999999887653
No 43
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=52.39 E-value=1e+02 Score=23.43 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=38.8
Q ss_pred CCCCCCHhHHHHHHHHHHHHHhCCCCcCEEEEc------chHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccH
Q 027642 86 HDRPLSKAGQDDAIKVSQRLQQLGWIPQLILSS------DAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTA 159 (220)
Q Consensus 86 ~d~pLt~~G~~qA~~l~~~L~~~~~~~~~i~sS------pl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~ 159 (220)
.+..+++.+.......++.+++ +.....|+|. ...-|...++.+.+. +++...+..++.-.. +.
T Consensus 14 ~~~~~~~~~~~R~~~a~~L~~~-g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~--gvp~~~I~~e~~s~~-------T~ 83 (155)
T PF02698_consen 14 PDGQLSPESRERLDEAARLYKA-GYAPRILFSGGYGHGDGRSEAEAMRDYLIEL--GVPEERIILEPKSTN-------TY 83 (155)
T ss_dssp -------S-HHHHHHHHHHHH--HHT--EEEE--SSTTHTS-HHHHHHHHHHHT-----GGGEEEE----S-------HH
T ss_pred ccccccHhHHHHHHHHHHHHhc-CCCCeEEECCCCCCCCCCCHHHHHHHHHHhc--ccchheeEccCCCCC-------HH
Confidence 3444666666666666666664 3344566776 445566666666554 466655554433221 34
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeChHHHHHHHH
Q 027642 160 EHLQKAICKYSRDEILTVMCMGHNRGWEEAAS 191 (220)
Q Consensus 160 ~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~ 191 (220)
+.+.....-+....-++++|||+.-=++-...
T Consensus 84 ena~~~~~~~~~~~~~~iilVT~~~H~~Ra~~ 115 (155)
T PF02698_consen 84 ENARFSKRLLKERGWQSIILVTSPYHMRRARM 115 (155)
T ss_dssp HHHHHHHHHHHT-SSS-EEEE--CCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCCeEEEECCHHHHHHHHH
Confidence 44443322221234478999987765544443
No 44
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=50.52 E-value=79 Score=27.96 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=59.4
Q ss_pred CCCCCCHhHHHHHHHHHHHHHhCCCC-cCEEEEcchHHHHHHHHHHHHHhcCCCcccee---------------------
Q 027642 86 HDRPLSKAGQDDAIKVSQRLQQLGWI-PQLILSSDAVRTRQTLEIMQQHVQGFLEAEVH--------------------- 143 (220)
Q Consensus 86 ~d~pLt~~G~~qA~~l~~~L~~~~~~-~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~--------------------- 143 (220)
.+.|... ..-+..+++++++.++. .+.++.||..=+.+-|+.+++.++ .+..-+.
T Consensus 140 f~~p~~~--l~~~p~l~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~ 216 (320)
T PRK02269 140 FDIPVDH--LMGAPLIADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVK 216 (320)
T ss_pred ccCCchh--hhhHHHHHHHHHHhCCCCCCcEEEEECccHHHHHHHHHHHhC-CCEEEEEecccCCCCceeEEEEeccccC
Confidence 4445432 34445677888765432 356999999999999999988875 3221111
Q ss_pred -----eccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHh
Q 027642 144 -----FISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFT 194 (220)
Q Consensus 144 -----~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~ 194 (220)
+.+|+. -.|.+.....+.+++. ....-.++||||-........+.
T Consensus 217 Gr~viIVDDIi----dTG~Tl~~aa~~Lk~~--GA~~V~~~~tHglf~~~a~~~l~ 266 (320)
T PRK02269 217 GKKCILIDDMI----DTAGTICHAADALAEA--GATEVYASCTHPVLSGPALDNIQ 266 (320)
T ss_pred CCEEEEEeeec----CcHHHHHHHHHHHHHC--CCCEEEEEEECcccCchHHHHHH
Confidence 011111 1255666666666552 44456789999877666665554
No 45
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=47.27 E-value=1.8e+02 Score=27.16 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCCcC--------------EEEEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHH
Q 027642 98 AIKVSQRLQQLGWIPQ--------------LILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQ 163 (220)
Q Consensus 98 A~~l~~~L~~~~~~~~--------------~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~ 163 (220)
-+++-+.|...|+ || .|+|||-.=|++=.-...... +|..++.+++.... |-+...++.
T Consensus 110 ~E~lK~kL~aEGl-Fd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR--~P~~~viv~pt~VQ----G~~A~~eIv 182 (440)
T COG1570 110 FEQLKAKLAAEGL-FDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRR--FPSVEVIVYPTLVQ----GEGAAEEIV 182 (440)
T ss_pred HHHHHHHHHhCCC-cChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhh--CCCCeEEEEecccc----CCCcHHHHH
Confidence 3556667766553 22 499999777776544433332 44445555444332 233456677
Q ss_pred HHHHHhhcCCCCeEEEEeChHH
Q 027642 164 KAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 164 ~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+.|+.+....+-.+|||+-||.
T Consensus 183 ~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 183 EAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred HHHHHhhccCCCCEEEEecCcc
Confidence 7776654334456777777664
No 46
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=45.69 E-value=1.9e+02 Score=24.48 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=62.4
Q ss_pred CCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHHHHHHHh
Q 027642 90 LSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQKAICKY 169 (220)
Q Consensus 90 Lt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~~ri~~~ 169 (220)
+.+.-..+++.+.+.|+..++.--.|+.+.-.-..+.++.+.+.+......-+.. ............++.+.+++
T Consensus 101 ~~p~~~~~~~a~~~~l~~~~w~~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~- 175 (348)
T PF01094_consen 101 TVPSDSSQARALVDLLKHFGWTRVSVVYSDDDYGNSLADSFQDLLRERGGICVAF----ISVVISSDSDAEELLKKLKE- 175 (348)
T ss_dssp SSB-HHHHHHHHHHHHHHTTSSEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEE----EEEEETTTSHHHHHHHHHHH-
T ss_pred ccccHHHHHHHHHHhhhcCCCceeeeeccccccccccchhhhhhhcccccceecc----cccccccccchhhhhhhhhh-
Confidence 6777888999999999998775444555554446666666666543100011111 01111233456777777776
Q ss_pred hcCCCCeEEEEeChHHHHHHHHHHh
Q 027642 170 SRDEILTVMCMGHNRGWEEAASMFT 194 (220)
Q Consensus 170 ~~~~~~~vliVtH~~~i~~ll~~l~ 194 (220)
.......|++.+....++.++..+.
T Consensus 176 ~~~~~rvvil~~~~~~~~~~l~~a~ 200 (348)
T PF01094_consen 176 IKSGARVVILCSSPEDARQFLEAAY 200 (348)
T ss_dssp HTTTTSEEEEESBHHHHHHHHHHHH
T ss_pred ccccceeeeeecccccccccccchh
Confidence 5466678888899999998888873
No 47
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.70 E-value=1.1e+02 Score=25.27 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=23.3
Q ss_pred CccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHH
Q 027642 156 GQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAAS 191 (220)
Q Consensus 156 GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~ 191 (220)
.++.+.+.+.+-....+.+.+.++|||-+.+.+=..
T Consensus 179 ~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 179 RATGDKIADLLFALNRERGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred hhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhh
Confidence 344555555444433467889999999998765443
No 48
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=42.68 E-value=54 Score=30.61 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=41.4
Q ss_pred CCCCCCCCCHhHHHHHHHHHHHHHhCC-----CCcCEEEEcchHHHHHHHHHHHHHhc
Q 027642 83 LRDHDRPLSKAGQDDAIKVSQRLQQLG-----WIPQLILSSDAVRTRQTLEIMQQHVQ 135 (220)
Q Consensus 83 ~g~~d~pLt~~G~~qA~~l~~~L~~~~-----~~~~~i~sSpl~Ra~qTA~~l~~~~~ 135 (220)
.+..+..|...|+..|.++++.|-++- ...-.|+++-..||.+||+.++..+.
T Consensus 126 ~~~~~~~l~~~g~~~a~R~~r~f~~~y~~~~n~~~y~i~tt~~~R~~dSA~~F~~GLf 183 (467)
T KOG1382|consen 126 EAELVDQLEDEGRMLAKRLARRFPALYYELENPTVYNINTTASQRVVDSAQAFAYGLF 183 (467)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHhhcCCceEEeeccchHHHHHHHHHHHhhhc
Confidence 345677788999999999998776532 22235999999999999999998874
No 49
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=39.80 E-value=60 Score=27.81 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=28.2
Q ss_pred cceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 140 AEVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 140 ~~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
.++...++.|.. .+.-+...+++.+.++..+...+|++|||.--
T Consensus 149 P~lLLlDEPFgA--LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 149 PKLLLLDEPFGA--LDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred CCEEEEcCCcch--hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 345445554432 34455666777766655577899999999744
No 50
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=39.35 E-value=1.6e+02 Score=27.84 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHh-CC--CCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHHHHHHHhh
Q 027642 94 GQDDAIKVSQRLQQ-LG--WIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQKAICKYS 170 (220)
Q Consensus 94 G~~qA~~l~~~L~~-~~--~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~ 170 (220)
++.++++-.+.|.+ .+ +.++..+.-=..=.+|=.|++..-+. ..++.+.++.-..-.| .| .+++.+.++.+
T Consensus 113 ~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr---~a~iLILDEPTaVLTP-~E-~~~lf~~l~~l- 186 (501)
T COG3845 113 DRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR---GARLLILDEPTAVLTP-QE-ADELFEILRRL- 186 (501)
T ss_pred CHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc---CCCEEEEcCCcccCCH-HH-HHHHHHHHHHH-
Confidence 45555554444433 33 45677776666677888888877653 2455555443322111 11 56677777664
Q ss_pred cCCCCeEEEEeCh
Q 027642 171 RDEILTVMCMGHN 183 (220)
Q Consensus 171 ~~~~~~vliVtH~ 183 (220)
...+.+|++|||-
T Consensus 187 ~~~G~tIi~ITHK 199 (501)
T COG3845 187 AAEGKTIIFITHK 199 (501)
T ss_pred HHCCCEEEEEecc
Confidence 3678899999995
No 51
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=39.00 E-value=55 Score=30.05 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=34.1
Q ss_pred CCCHhHHHHHHHHHHHHHhCC-----------CCcC--EEEEcchHHHHHHHHHHH
Q 027642 89 PLSKAGQDDAIKVSQRLQQLG-----------WIPQ--LILSSDAVRTRQTLEIMQ 131 (220)
Q Consensus 89 pLt~~G~~qA~~l~~~L~~~~-----------~~~~--~i~sSpl~Ra~qTA~~l~ 131 (220)
.||.+|..|-..+|+.|++.. ...+ .|+|+-..|+.|.|-.+.
T Consensus 168 ~LT~~G~~QhL~~G~~~r~~Y~k~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~l 223 (487)
T KOG3672|consen 168 MLTAEGALQHLRLGKYFRHRYEKTKLKADPNQRSVADLYVVTTKYNRTVQSALAFL 223 (487)
T ss_pred ceeHHhHHHHHhhhHHHHHHHhhccccCCccccccceeEEEeccccHHHHHHHHHH
Confidence 479999999999999998621 1122 399999999999997764
No 52
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.45 E-value=1.3e+02 Score=26.53 Aligned_cols=90 Identities=10% Similarity=-0.003 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccce------------------------eeccccccccC
Q 027642 98 AIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEV------------------------HFISSFYSVAA 153 (220)
Q Consensus 98 A~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i------------------------~~~~~l~~~~~ 153 (220)
+..+++++++.++. +.++.||...+..=|+.+++.++ .+..-+ -..++...
T Consensus 145 ~~~l~~~i~~~~~~-~~vvv~pd~Gg~~~A~~la~~Lg-~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~--- 219 (309)
T PRK01259 145 SPILLEDIKQKNLE-NLVVVSPDVGGVVRARALAKRLD-ADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMID--- 219 (309)
T ss_pred cHHHHHHHHhcCCC-CcEEEEECCCcHHHHHHHHHHhC-CCEEEEEeecccceeEEEEeecccCCCCEEEEEecccC---
Confidence 45577778765443 45899999999999999998875 321100 01111111
Q ss_pred CCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhc
Q 027642 154 MDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTG 195 (220)
Q Consensus 154 p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g 195 (220)
.|.+.....+.+++. ......++++|+-.-......+..
T Consensus 220 -TG~T~~~a~~~l~~~--Ga~~v~~~~tH~i~~~~a~~~l~~ 258 (309)
T PRK01259 220 -TAGTLCKAAEALKER--GAKSVYAYATHPVLSGGAIERIEN 258 (309)
T ss_pred -cHHHHHHHHHHHHcc--CCCEEEEEEEeeeCChHHHHHHhc
Confidence 355666556555542 344567888998776666666543
No 53
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=38.44 E-value=72 Score=27.41 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=19.6
Q ss_pred ccHHHHHHHHHHhhcCCCCeEEEEeChH
Q 027642 157 QTAEHLQKAICKYSRDEILTVMCMGHNR 184 (220)
Q Consensus 157 Es~~~l~~ri~~~~~~~~~~vliVtH~~ 184 (220)
.+..++.+.++++-++ +.+||+|+|.-
T Consensus 173 ~~~~~i~~lL~~l~~e-g~tIl~vtHDL 199 (254)
T COG1121 173 AGQKEIYDLLKELRQE-GKTVLMVTHDL 199 (254)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3456677777775434 88999999974
No 54
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.09 E-value=1.7e+02 Score=25.92 Aligned_cols=89 Identities=11% Similarity=0.075 Sum_probs=51.2
Q ss_pred HHHHHHHhCCCC-cCEEEEcchHHHHHHHHHHHHHhcCCCcccee-----------------------eccccccccCCC
Q 027642 100 KVSQRLQQLGWI-PQLILSSDAVRTRQTLEIMQQHVQGFLEAEVH-----------------------FISSFYSVAAMD 155 (220)
Q Consensus 100 ~l~~~L~~~~~~-~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~-----------------------~~~~l~~~~~p~ 155 (220)
.+++++++.++. .+.++.||..-+.+-|+.+++.++ .+-.-+. +.+|+.. .
T Consensus 156 ~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A~~la~~L~-~~~~~~~~~r~~~~~~~~~i~gdV~gk~viIVDDIid----T 230 (323)
T PRK02458 156 LFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAEYLD-APIAIIDYAQDDSEREEGYIIGDVAGKKAILIDDILN----T 230 (323)
T ss_pred HHHHHHHHhCCCCCceEEEEECCChHHHHHHHHHHhC-CCEEEEEEecCCCcceeeccccccCCCEEEEEcceeC----c
Confidence 456666554331 356889998888888888888874 3221111 1111111 2
Q ss_pred CccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhc
Q 027642 156 GQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTG 195 (220)
Q Consensus 156 GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g 195 (220)
|.+.....+.+++. ...+-.++||||-........|..
T Consensus 231 G~Tl~~aa~~Lk~~--GA~~V~~~~tHgif~~~a~~~l~~ 268 (323)
T PRK02458 231 GKTFAEAAKIVERE--GATEIYAVASHGLFAGGAAEVLEN 268 (323)
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEEEChhcCchHHHHHhh
Confidence 44555555555442 445667899998776666665543
No 55
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=38.09 E-value=2.6e+02 Score=24.03 Aligned_cols=100 Identities=8% Similarity=0.055 Sum_probs=55.2
Q ss_pred CCHhHHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeecc-ccccccCCCCccHHHHHHHHHH
Q 027642 90 LSKAGQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFIS-SFYSVAAMDGQTAEHLQKAICK 168 (220)
Q Consensus 90 Lt~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~-~l~~~~~p~GEs~~~l~~ri~~ 168 (220)
+.+....++..+++.++..+++--.++.+...-.+..++.+.+.+... .+++.. ..| +.+.+..++...|.+
T Consensus 115 ~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~---g~~v~~~~~~----~~~~~~~d~~~~l~~ 187 (350)
T cd06366 115 TTPSDSSQNPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQEA---GIEISYRAAF----PPSANDDDITDALKK 187 (350)
T ss_pred cccchHhHHHHHHHHHHHCCCcEEEEEEEcCcccchhHHHHHHHHHHc---CCEEEEEecc----CCCCChhHHHHHHHH
Confidence 344456788888888887665433344444445666666666655311 122111 112 122223445544544
Q ss_pred hhcCCCCeEEEEeChHHHHHHHHHHhcC
Q 027642 169 YSRDEILTVMCMGHNRGWEEAASMFTGA 196 (220)
Q Consensus 169 ~~~~~~~~vliVtH~~~i~~ll~~l~g~ 196 (220)
+.....+.|++++++.....++..+...
T Consensus 188 i~~~~~dvvi~~~~~~~~~~~~~~a~~~ 215 (350)
T cd06366 188 LKEKDSRVIVVHFSPDLARRVFCEAYKL 215 (350)
T ss_pred HhcCCCeEEEEECChHHHHHHHHHHHHc
Confidence 4334456778889988888787776543
No 56
>COG3910 Predicted ATPase [General function prediction only]
Probab=37.43 E-value=76 Score=26.52 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=17.7
Q ss_pred HHHHHHHhhcCCCCeEEEEeChHHHHH
Q 027642 162 LQKAICKYSRDEILTVMCMGHNRGWEE 188 (220)
Q Consensus 162 l~~ri~~~~~~~~~~vliVtH~~~i~~ 188 (220)
++..+..+. +.+..++|+||.|++-+
T Consensus 167 lla~l~~la-~sGaQ~IiATHSPiLlA 192 (233)
T COG3910 167 LLAILRDLA-DSGAQIIIATHSPILLA 192 (233)
T ss_pred HHHHHHHHH-hcCCeEEEEecChhhee
Confidence 334444433 56688999999998753
No 57
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=36.83 E-value=1.3e+02 Score=22.10 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhc-CCCCeEEEEeC--hHHHHHHHHHHhc
Q 027642 160 EHLQKAICKYSR-DEILTVMCMGH--NRGWEEAASMFTG 195 (220)
Q Consensus 160 ~~l~~ri~~~~~-~~~~~vliVtH--~~~i~~ll~~l~g 195 (220)
..+.+.|+++.. ....+|+|++| |+.+..++...+.
T Consensus 48 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l~ 86 (140)
T PF01764_consen 48 DQILDALKELVEKYPDYSIVITGHSLGGALASLAAADLA 86 (140)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhhh
Confidence 344455555432 34578999999 4567766666543
No 58
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=36.36 E-value=1.6e+02 Score=25.98 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccce------------------------eeccccccccCC
Q 027642 99 IKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEV------------------------HFISSFYSVAAM 154 (220)
Q Consensus 99 ~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i------------------------~~~~~l~~~~~p 154 (220)
..+++++.+..-..+.++.||..=+.+-|+.+++.++..+..-+ -+.+|+..
T Consensus 153 ~~l~~~i~~~~~~~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIid---- 228 (319)
T PRK04923 153 PLLLADIWRAYGTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVD---- 228 (319)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccC----
Confidence 34566664321113568999988888888888887742111000 01111221
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHh
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFT 194 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~ 194 (220)
.|.+.....+.+++. ....-.++||||-........+.
T Consensus 229 TG~Tl~~aa~~Lk~~--GA~~V~~~~THgvfs~~a~~~l~ 266 (319)
T PRK04923 229 TAGTLCAAAAALKQR--GALKVVAYITHPVLSGPAVDNIN 266 (319)
T ss_pred chHHHHHHHHHHHHC--CCCEEEEEEECcccCchHHHHHh
Confidence 356666666666652 44556789999877765555553
No 59
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.20 E-value=1.6e+02 Score=26.25 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=51.2
Q ss_pred HHHHHHHHHhC-CCCcCEEEEcchHHHHHHHHHHHHHhcCCCccce------------------------eecccccccc
Q 027642 98 AIKVSQRLQQL-GWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEV------------------------HFISSFYSVA 152 (220)
Q Consensus 98 A~~l~~~L~~~-~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i------------------------~~~~~l~~~~ 152 (220)
+..+++++.+. +. -+.++.||-..+.+-|+.+++.++ .+..-+ -..+|+..
T Consensus 154 ~~~~~~~~~~~~~~-~~~vvVsPD~gg~~rA~~lA~~lg-~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~-- 229 (332)
T PRK00553 154 YHVFLSRVLELLGK-KDLVVVSPDYGGVKRARLIAESLE-LPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMID-- 229 (332)
T ss_pred hHHHHHHHHHhcCC-CCeEEEEECCCcHHHHHHHHHHhC-CCEEEEEEecCCcceEeeEEeeccCCCCEEEEEecccc--
Confidence 34456666542 22 357999998888888888887774 331101 11112221
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHH
Q 027642 153 AMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMF 193 (220)
Q Consensus 153 ~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l 193 (220)
.|.+.....+.+++. ......+++|||-........+
T Consensus 230 --TG~Tl~~aa~~Lk~~--GA~~V~~~atHglf~~~a~~~l 266 (332)
T PRK00553 230 --TGGTVIAAAKLLKKQ--KAKKVCVMATHGLFNKNAIQLF 266 (332)
T ss_pred --chHHHHHHHHHHHHc--CCcEEEEEEEeeecCchHHHHH
Confidence 355666666666552 3445678899997665555555
No 60
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=34.73 E-value=1.6e+02 Score=25.74 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccc----------ee---------------ecccccccc
Q 027642 98 AIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAE----------VH---------------FISSFYSVA 152 (220)
Q Consensus 98 A~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~----------i~---------------~~~~l~~~~ 152 (220)
+..++++|++. . .+.++.||...+..=|+.+++.++ .+-.- .. +.+|+..
T Consensus 148 ~~~la~~l~~~-~-~~~vVVsPd~g~~~~a~~la~~l~-~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIid-- 222 (301)
T PRK07199 148 APAIAAWIRAH-V-PRPLLIGPDEESEQWVAAVAERAG-APHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVS-- 222 (301)
T ss_pred HHHHHHHHHhc-C-CCcEEEEeCCChHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccC--
Confidence 45577788653 2 366888899999999999988875 22110 00 1111121
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHH
Q 027642 153 AMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMF 193 (220)
Q Consensus 153 ~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l 193 (220)
.|.+.....+.+++. ....-.++++||-........+
T Consensus 223 --TG~Tl~~aa~~Lk~~--GA~~V~~~~tHgvfs~~a~~~l 259 (301)
T PRK07199 223 --TGRTLIEAARQLRAA--GAASPDCVVVHALFAGDAYSAL 259 (301)
T ss_pred --cHHHHHHHHHHHHHC--CCcEEEEEEEeeeCChHHHHHH
Confidence 255666666666552 3345578899986555555554
No 61
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=32.85 E-value=67 Score=25.54 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHH
Q 027642 158 TAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMF 193 (220)
Q Consensus 158 s~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l 193 (220)
..++..+.+++.+..-.+++++|+|+-..-+++.++
T Consensus 38 ~~~~W~~~l~~~i~~~~~~~ilVaHSLGc~~~l~~l 73 (171)
T PF06821_consen 38 DLDEWVQALDQAIDAIDEPTILVAHSLGCLTALRWL 73 (171)
T ss_dssp -HHHHHHHHHHCCHC-TTTEEEEEETHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEeCHHHHHHHHHH
Confidence 466667777766555567799999999888888888
No 62
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=32.06 E-value=93 Score=25.95 Aligned_cols=45 Identities=11% Similarity=0.250 Sum_probs=29.8
Q ss_pred ccceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 139 EAEVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 139 ~~~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+.+|...++.|..- +-.-..++...+.++..+.+-++|+|||.+-
T Consensus 147 ~~PilLLDEPFsAL--dP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~ 191 (231)
T COG3840 147 EQPILLLDEPFSAL--DPALRAEMLALVSQLCDERKMTLLMVTHHPE 191 (231)
T ss_pred cCCeEEecCchhhc--CHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 34566566555432 2123466777777766678889999999975
No 63
>PRK15045 cellulose biosynthesis protein BcsE; Provisional
Probab=30.26 E-value=78 Score=30.00 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=28.1
Q ss_pred CccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHh
Q 027642 156 GQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFT 194 (220)
Q Consensus 156 GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~ 194 (220)
+|....+.+.+++|.....-++|+|+||+........|.
T Consensus 120 ~~~l~~wl~~l~~w~~~~~~tLLvI~~g~~~~~~~~~L~ 158 (519)
T PRK15045 120 AERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLM 158 (519)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhhHHHHH
Confidence 455667777777777677788999999988665444443
No 64
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=30.22 E-value=1.1e+02 Score=24.59 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=22.6
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGW 186 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i 186 (220)
+-++.+.+.+.++++..+.+.+|++|+|....
T Consensus 172 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 172 DSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 44566777888877643346789999998654
No 65
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=30.12 E-value=1.1e+02 Score=24.78 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=22.3
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++.+.+.+.+.++..+.+.+++++||...
T Consensus 173 D~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 173 DNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4456777888887754334678999999864
No 66
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=29.99 E-value=1e+02 Score=25.02 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=26.7
Q ss_pred ceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 141 EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 141 ~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
++-..++.... -+-++.+.+.+.|+++..+.+.+|+++||...
T Consensus 165 ~lllLDEPt~~--LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 207 (228)
T cd03257 165 KLLIADEPTSA--LDVSVQAQILDLLKKLQEELGLTLLFITHDLG 207 (228)
T ss_pred CEEEecCCCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 44444443322 24456777888887764333679999999864
No 67
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=28.86 E-value=1.2e+02 Score=24.52 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=27.3
Q ss_pred ceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 141 EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 141 ~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
++-..++.+.. .+-++...+.+.+.++....+.++++|+|...
T Consensus 148 ~llllDEPt~~--LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 148 PILLLDEPFSA--LDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred CEEEEcCCCcc--CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34444443332 24556777888887764344678999999864
No 68
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.39 E-value=4.7e+02 Score=24.07 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCCcC--------------EEEEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCc-cHHHHH
Q 027642 99 IKVSQRLQQLGWIPQ--------------LILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQ-TAEHLQ 163 (220)
Q Consensus 99 ~~l~~~L~~~~~~~~--------------~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GE-s~~~l~ 163 (220)
+++-+.|...|+ || .|+|||-.-|.+=.--..... .|..++.+.+... .|+ ...++.
T Consensus 105 ~~lk~~L~~eGl-fd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~~~r--~p~~~~~~~~~~v-----QG~~a~~~i~ 176 (432)
T TIGR00237 105 EQLKEKLAAEGL-FDQEYKKPLPHFPKRVGVITSQTGAALADILHILKRR--DPSLKVVIYPTLV-----QGEGAVQSIV 176 (432)
T ss_pred HHHHHHHHHCCC-CCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhh--CCCceEEEecccc-----cCccHHHHHH
Confidence 556777776654 22 499999888887665544432 2333343322222 343 446666
Q ss_pred HHHHHhhcCCCCeEEEEeChHH
Q 027642 164 KAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 164 ~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+.|+.+.....-.++||+=||.
T Consensus 177 ~al~~~~~~~~~dviii~RGGG 198 (432)
T TIGR00237 177 ESIELANTKNECDVLIVGRGGG 198 (432)
T ss_pred HHHHHhhcCCCCCEEEEecCCC
Confidence 6666543222235666666654
No 69
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=28.00 E-value=1.1e+02 Score=25.11 Aligned_cols=61 Identities=13% Similarity=0.231 Sum_probs=33.8
Q ss_pred ceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 141 EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 141 ~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
++-..++.... .+-++.+.+.+.|+++..+.+.++++|||.... +..+++.-+.+..|.+.
T Consensus 165 ~llllDEPt~~--LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~---~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 165 DLILADEPIAS--LDPKTSKQVMDYLKRINKEDGITVIINLHQVDL---AKKYADRIVGLKAGEIV 225 (243)
T ss_pred CEEEEeCCccc--CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH---HHHhcCeEEEEECCEEE
Confidence 34444443322 244566777777777543346789999998543 33333433345555443
No 70
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.95 E-value=70 Score=30.68 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=26.0
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAAS 191 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~ 191 (220)
+|+..+.+-++++++ ....-|++|||-|-+.+...
T Consensus 467 sG~~A~aVg~~L~~L--s~~~QVl~VTHlPQVAa~ad 501 (557)
T COG0497 467 SGRVAQAVGKKLRRL--SEHHQVLCVTHLPQVAAMAD 501 (557)
T ss_pred ChHHHHHHHHHHHHH--hcCceEEEEecHHHHHhhhc
Confidence 456666677777775 45567999999999887665
No 71
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=27.83 E-value=1.7e+02 Score=25.59 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=26.3
Q ss_pred HHHHHHHHHhh----cCCCCeEEEEeChHHHHHHHHHHhcC
Q 027642 160 EHLQKAICKYS----RDEILTVMCMGHNRGWEEAASMFTGA 196 (220)
Q Consensus 160 ~~l~~ri~~~~----~~~~~~vliVtH~~~i~~ll~~l~g~ 196 (220)
+.+.+||...+ ...+.+++||+||-.-..++.++...
T Consensus 174 ~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~ 214 (310)
T PF12048_consen 174 ERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEK 214 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcC
Confidence 34555665532 25566799999999988888888654
No 72
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.80 E-value=1.2e+02 Score=24.86 Aligned_cols=60 Identities=13% Similarity=0.069 Sum_probs=33.6
Q ss_pred ceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceE
Q 027642 141 EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNA 205 (220)
Q Consensus 141 ~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~ 205 (220)
++-..++.... .+-++.+.+.+.++++..+.+.+|++|+|..-. +..+++.-+.+.+|.+
T Consensus 156 ~llllDEPt~~--LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~---~~~~~d~v~~l~~G~i 215 (235)
T cd03261 156 ELLLYDEPTAG--LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT---AFAIADRIAVLYDGKI 215 (235)
T ss_pred CEEEecCCccc--CCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH---HHHhcCEEEEEECCeE
Confidence 44444443322 244566777777777543346789999998642 2334443334555554
No 73
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.74 E-value=1.1e+02 Score=24.71 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++.+.+.+.++++....+.+|++++|...
T Consensus 163 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 163 DALTREQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 4456677778777654344678999999865
No 74
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=27.49 E-value=2.5e+02 Score=24.49 Aligned_cols=38 Identities=5% Similarity=-0.002 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhc
Q 027642 97 DAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQ 135 (220)
Q Consensus 97 qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~ 135 (220)
-+..+++++++... -+.++.+|...+.+-|..+++.++
T Consensus 145 a~~~l~~~i~~~~~-~~~viv~pd~g~~~~A~~lA~~Lg 182 (308)
T TIGR01251 145 ASPVLAEYLKKKIL-DNPVVVSPDAGGVERAKKVADALG 182 (308)
T ss_pred CHHHHHHHHHhhCC-CCCEEEEECCchHHHHHHHHHHhC
Confidence 34667888876432 356888899999999999998875
No 75
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=27.32 E-value=1.2e+02 Score=25.67 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=26.2
Q ss_pred ceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChH
Q 027642 141 EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNR 184 (220)
Q Consensus 141 ~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~ 184 (220)
++.+.++.+.. .+-++.+.+.+.++++....+.+|++|||..
T Consensus 163 ~lllLDEPt~~--LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 163 DLIMFDEPFVG--QDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred CEEEEcCCCcc--CCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 34444443322 2445677778888776433467899999984
No 76
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=27.25 E-value=4.5e+02 Score=23.38 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHH----HHHHHhhc
Q 027642 96 DDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQ----KAICKYSR 171 (220)
Q Consensus 96 ~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~----~ri~~~~~ 171 (220)
..+.++-+..++.|+ +..=+.+|..+|.+-++.|.+.++ +.+..+.-.+. .. +......+- +.+.+.+
T Consensus 41 ~~v~rlL~~Ar~~Gi-V~I~i~~~~~~~~~Le~~L~~~fg-L~~a~VVp~~~--~~---~~~~~~~lg~aaA~~l~~~l- 112 (321)
T COG2390 41 ATVSRLLAKAREEGI-VKISINSPVEGCLELEQQLKERFG-LKEAIVVPSDS--DA---DDSILRRLGRAAAQYLESLL- 112 (321)
T ss_pred HHHHHHHHHHHHCCe-EEEEeCCCCcchHHHHHHHHHhcC-CCeEEEEcCCC--CC---chHHHHHHHHHHHHHHHHhC-
Confidence 334445455566665 444556999999999999999885 54433322111 00 011111121 2233333
Q ss_pred CCCCeEEEEeChHHHHHHHHHHhcC
Q 027642 172 DEILTVMCMGHNRGWEEAASMFTGA 196 (220)
Q Consensus 172 ~~~~~vliVtH~~~i~~ll~~l~g~ 196 (220)
. .+.++-|++|-++.+++.++...
T Consensus 113 ~-~gdvigV~wGrTv~a~~~~l~~~ 136 (321)
T COG2390 113 K-PGDVIGVGWGRTLSAVVDNLPPA 136 (321)
T ss_pred C-CCCEEEEeccHHHHHHHHhcCcC
Confidence 2 33499999999999999988654
No 77
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=27.21 E-value=1.3e+02 Score=24.72 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=22.7
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGW 186 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i 186 (220)
+-++.+.+.+.++++....+.+|+++||..-.
T Consensus 177 D~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 177 DARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 44567778887877543346789999998643
No 78
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=27.01 E-value=1.2e+02 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=21.9
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++...+.+.|+++..+.+.+|++|+|...
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3455667777777764445689999999854
No 79
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.82 E-value=1.4e+02 Score=24.19 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=29.9
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
+-++.+.+.+.+.++..+.+.+|++++|... .+..+++.-+.+.+|.+.
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~---~~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 163 DPQTRAHVWEYIEKLKEEFGMTILLTTHYME---EAEQLCDRVAIIDHGRII 211 (220)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH---HHHHhCCEEEEEeCCEEE
Confidence 4456777777777754333678999999754 233333333455566553
No 80
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=26.19 E-value=1.5e+02 Score=24.09 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=27.1
Q ss_pred CccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHh
Q 027642 156 GQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFT 194 (220)
Q Consensus 156 GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~ 194 (220)
--..++..+++.+.+....+.+++|+|+-..-+++.++-
T Consensus 40 ~P~~~dWi~~l~~~v~a~~~~~vlVAHSLGc~~v~h~~~ 78 (181)
T COG3545 40 APVLDDWIARLEKEVNAAEGPVVLVAHSLGCATVAHWAE 78 (181)
T ss_pred CCCHHHHHHHHHHHHhccCCCeEEEEecccHHHHHHHHH
Confidence 335677777777655444566999999987766666653
No 81
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=25.92 E-value=4e+02 Score=23.32 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCCC-cCEEEEcchHHHHHHHHHHHHHhcCCCcccee------------------------eccccccccC
Q 027642 99 IKVSQRLQQLGWI-PQLILSSDAVRTRQTLEIMQQHVQGFLEAEVH------------------------FISSFYSVAA 153 (220)
Q Consensus 99 ~~l~~~L~~~~~~-~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~------------------------~~~~l~~~~~ 153 (220)
..+++++.+..+. .+.++.||...+..-|+.+++.+.+.+...+. ..++..
T Consensus 137 ~~~~~~i~~~~~~~~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii---- 212 (302)
T PLN02369 137 PVILDYLASKTISSPDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMI---- 212 (302)
T ss_pred HHHHHHHHHhCCCCCceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcc----
Confidence 3456677553221 35799999999999999998876322211110 011111
Q ss_pred CCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhc
Q 027642 154 MDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTG 195 (220)
Q Consensus 154 p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g 195 (220)
-.|.+.....+.+++. ....-.++++|+-.-...+..+..
T Consensus 213 ~TG~Tl~~a~~~l~~~--Ga~~v~~~~tH~v~~~~a~~~l~~ 252 (302)
T PLN02369 213 DTAGTITKGAALLHQE--GAREVYACATHAVFSPPAIERLSS 252 (302)
T ss_pred cchHHHHHHHHHHHhC--CCCEEEEEEEeeeeCHHHHHHHHh
Confidence 1255555555555542 344567888998877766666654
No 82
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.87 E-value=1.2e+02 Score=24.36 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=22.1
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++.+.+.+.+.++..+.+.+++++||..-
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 4456777777777754333678999999865
No 83
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.76 E-value=3.4e+02 Score=23.77 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCcccee--------------------------ecccccccc
Q 027642 99 IKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVH--------------------------FISSFYSVA 152 (220)
Q Consensus 99 ~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~--------------------------~~~~l~~~~ 152 (220)
..+++++++..-..+.++.||..-+..-|+.+++.++..+..-+. ..+++.
T Consensus 135 ~~la~~i~~~~~~~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi--- 211 (304)
T PRK03092 135 PLLADYVRDKYDLDNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMI--- 211 (304)
T ss_pred HHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEcccc---
Confidence 446677754311136699999999999999998887522211110 001111
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHh
Q 027642 153 AMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFT 194 (220)
Q Consensus 153 ~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~ 194 (220)
-.|.+.....+.+++. ....-.++++|+-.-......+.
T Consensus 212 -~TG~Tl~~aa~~Lk~~--Ga~~I~~~~tH~v~~~~a~~~l~ 250 (304)
T PRK03092 212 -DTGGTIAGAVRALKEA--GAKDVIIAATHGVLSGPAAERLK 250 (304)
T ss_pred -CcHHHHHHHHHHHHhc--CCCeEEEEEEcccCChHHHHHHH
Confidence 1255555555555542 33456788899876655555554
No 84
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=25.53 E-value=4.5e+02 Score=22.90 Aligned_cols=98 Identities=18% Similarity=0.216 Sum_probs=48.1
Q ss_pred CHhHHHHHHHHHHHHHhCCCCcCEEEEcchH-HHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHHHHHHHh
Q 027642 91 SKAGQDDAIKVSQRLQQLGWIPQLILSSDAV-RTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQKAICKY 169 (220)
Q Consensus 91 t~~G~~qA~~l~~~L~~~~~~~~~i~sSpl~-Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~~ri~~~ 169 (220)
.+....|+..++++++..+++.-.|+..... .+...++.+.+.+.... .++... ..+. .+....++...++++
T Consensus 118 ~~~~~~~~~a~~~~l~~~~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G-~~v~~~-~~~~----~~~~~~d~~~~l~~i 191 (389)
T cd06352 118 LPPARKLGEAVLALLRWFNWHVAVVVYSDDSENCFFTLEALEAALREFN-LTVSHV-VFME----DNSGAEDLLEILQDI 191 (389)
T ss_pred CCcHHHHHHHHHHHHHHcCceEEEEEEecCCccHHHHHHHHHHHHHhcC-CeEEEE-EEec----CCccchhHHHHHHHh
Confidence 3444678888888888766433334333222 45555555555543111 112111 1111 110123344444443
Q ss_pred hcCCCCeEEEEeChHHHHHHHHHHhc
Q 027642 170 SRDEILTVMCMGHNRGWEEAASMFTG 195 (220)
Q Consensus 170 ~~~~~~~vliVtH~~~i~~ll~~l~g 195 (220)
.... +.|++++|+.....++..+-.
T Consensus 192 ~~~~-~vii~~~~~~~~~~~l~q~~~ 216 (389)
T cd06352 192 KRRS-RIIIMCGSSEDVRELLLAAHD 216 (389)
T ss_pred hhcc-eEEEEECCHHHHHHHHHHHHH
Confidence 2233 566777888878888776644
No 85
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=25.36 E-value=2.2e+02 Score=22.47 Aligned_cols=85 Identities=19% Similarity=0.301 Sum_probs=48.8
Q ss_pred CCHhHHHHHHHHHHHH-HhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHHHHHHH
Q 027642 90 LSKAGQDDAIKVSQRL-QQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQKAICK 168 (220)
Q Consensus 90 Lt~~G~~qA~~l~~~L-~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~~ri~~ 168 (220)
+-....+++...++.+ ...+ +|.|+|--. ||+.|.+.+ .+|..++.. |..|+++.+.+
T Consensus 14 v~~~~~e~~v~~a~~~~~~~g--~dViIsRG~-----ta~~lr~~~-~iPVV~I~~-------------s~~Dil~al~~ 72 (176)
T PF06506_consen 14 VIEASLEEAVEEARQLLESEG--ADVIISRGG-----TAELLRKHV-SIPVVEIPI-------------SGFDILRALAK 72 (176)
T ss_dssp EEE--HHHHHHHHHHHHTTTT---SEEEEEHH-----HHHHHHCC--SS-EEEE----------------HHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHhhHhcC--CeEEEECCH-----HHHHHHHhC-CCCEEEECC-------------CHhHHHHHHHH
Confidence 3344556677777777 4433 588888654 888888776 344332321 35677777776
Q ss_pred hhcCCCCeEEEEeChHHHH--HHHHHHhcC
Q 027642 169 YSRDEILTVMCMGHNRGWE--EAASMFTGA 196 (220)
Q Consensus 169 ~~~~~~~~vliVtH~~~i~--~ll~~l~g~ 196 (220)
.. ....+|.+|+|...+. ..+..++|.
T Consensus 73 a~-~~~~~Iavv~~~~~~~~~~~~~~ll~~ 101 (176)
T PF06506_consen 73 AK-KYGPKIAVVGYPNIIPGLESIEELLGV 101 (176)
T ss_dssp CC-CCTSEEEEEEESS-SCCHHHHHHHHT-
T ss_pred HH-hcCCcEEEEecccccHHHHHHHHHhCC
Confidence 43 5668999999998875 334444454
No 86
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.62 E-value=1.4e+02 Score=23.99 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++...+.+.+.++....+.+|++++|...
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 162 DAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 3456677777777754334678999999864
No 87
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=24.47 E-value=1.6e+02 Score=23.52 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=21.7
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++.+.+.+.+.++.. .+.+|+++||..-
T Consensus 166 D~~~~~~~~~~l~~~~~-~~~tvi~~sH~~~ 195 (211)
T cd03225 166 DPAGRRELLELLKKLKA-EGKTIIIVTHDLD 195 (211)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 44567778888877643 3678999999854
No 88
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=24.47 E-value=1e+02 Score=24.78 Aligned_cols=21 Identities=19% Similarity=0.578 Sum_probs=16.5
Q ss_pred HHHHHHhCCCCcCEEEEcchH
Q 027642 101 VSQRLQQLGWIPQLILSSDAV 121 (220)
Q Consensus 101 l~~~L~~~~~~~~~i~sSpl~ 121 (220)
++..|++.|+.||.|+..+--
T Consensus 56 a~~~L~~~Gf~PDvI~~H~GW 76 (171)
T PF12000_consen 56 AARQLRAQGFVPDVIIAHPGW 76 (171)
T ss_pred HHHHHHHcCCCCCEEEEcCCc
Confidence 445677789999999998853
No 89
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=24.43 E-value=1.4e+02 Score=24.03 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=21.6
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++.+.+.+.++++..+.+.+|+++||...
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3455677777777754334679999999863
No 90
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=24.41 E-value=3.3e+02 Score=20.91 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=49.9
Q ss_pred CCCHhHHHHHHHHHHHHHhC-----------CCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCc
Q 027642 89 PLSKAGQDDAIKVSQRLQQL-----------GWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQ 157 (220)
Q Consensus 89 pLt~~G~~qA~~l~~~L~~~-----------~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GE 157 (220)
.||+.-....-.+|..|+.. +-....+|--|..|++-+.+.....+++ ..+.+..+-... -.||
T Consensus 8 dls~~ei~~ll~~A~~lk~~~~~~~~~~~l~gk~v~~lF~e~StRTR~SFe~A~~~LGg---~~i~~~~~~s~~--~k~E 82 (142)
T PF02729_consen 8 DLSPEEIEALLDLAKELKAAPKKGKPSQLLKGKTVALLFFEPSTRTRLSFEAAANRLGG---HVIYLDPSTSSL--GKGE 82 (142)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHTTCCTTTTTTCEEEEEESS--HHHHHHHHHHHHHTTC---EEEEEETTTSST--TTSS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhcCCCcccCCCCEEEEEecCCCchhhhhHHHhhhccee---EEEEECcccccC--cCCC
Confidence 36677777777777777641 1224568999999999999999999873 233333322222 2599
Q ss_pred cHHHHHHHHHHh
Q 027642 158 TAEHLQKAICKY 169 (220)
Q Consensus 158 s~~~l~~ri~~~ 169 (220)
+..|....+..+
T Consensus 83 sl~Dtar~ls~~ 94 (142)
T PF02729_consen 83 SLEDTARVLSRY 94 (142)
T ss_dssp EHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 999999988886
No 91
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.32 E-value=1.4e+02 Score=23.94 Aligned_cols=62 Identities=11% Similarity=0.213 Sum_probs=34.9
Q ss_pred EEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 116 LSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 116 ~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+|.-.+|=..-|..+... .++-..++.... .+.++.+.+.+.++++..+.+.+++++||...
T Consensus 129 LS~G~~qrv~ia~al~~~------p~llllDEP~~~--LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 190 (211)
T cd03298 129 LSGGERQRVALARVLVRD------KPVLLLDEPFAA--LDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190 (211)
T ss_pred CCHHHHHHHHHHHHHhcC------CCEEEEcCCccc--CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 444444444444444321 334444443322 24566777888887754344678999999864
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.26 E-value=1.3e+02 Score=24.69 Aligned_cols=60 Identities=10% Similarity=0.230 Sum_probs=33.0
Q ss_pred ceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceE
Q 027642 141 EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNA 205 (220)
Q Consensus 141 ~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~ 205 (220)
++-..++.... .+-++.+.+.+.+.++....+.+|++|+|... .+..++..-+.+..|.+
T Consensus 156 ~llllDEP~~~--LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~---~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 156 KVLLLDEPFGA--LDAKVRKELRRWLRRLHDELHVTTVFVTHDQE---EALEVADRVVVMNKGRI 215 (239)
T ss_pred CEEEEcCCccc--CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH---HHHHhCCEEEEEECCeE
Confidence 34444443322 24456677777777754334678999999864 22233333334455554
No 93
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=24.26 E-value=5.3e+02 Score=23.22 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHHHHHHHhhc-C
Q 027642 94 GQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQKAICKYSR-D 172 (220)
Q Consensus 94 G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~-~ 172 (220)
-..|+..+++.++..+++--.|+.+.-.--...++.+.+.+.... ..+.... .+.. .....++...|+++.. .
T Consensus 156 d~~~~~a~~~~l~~~~w~~vaii~~~~~~G~~~~~~~~~~~~~~g-i~i~~~~-~~~~----~~~~~d~~~~l~~l~~~~ 229 (452)
T cd06362 156 DSFQAQAMVDIVKAFNWTYVSTVASEGNYGEKGIEAFEKLAAERG-ICIAGSE-KIPS----SATEEEFDNIIRKLLSKP 229 (452)
T ss_pred hHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHHHHCC-eeEEEEE-EcCC----CCCHHHHHHHHHHHhhcC
Confidence 347888888888876654333344333233455666655543111 1121111 1111 1112444444444322 2
Q ss_pred CCCeEEEEeChHHHHHHHHHHhc
Q 027642 173 EILTVMCMGHNRGWEEAASMFTG 195 (220)
Q Consensus 173 ~~~~vliVtH~~~i~~ll~~l~g 195 (220)
..+-|+++++......++..+..
T Consensus 230 ~a~viil~~~~~~~~~~~~~a~~ 252 (452)
T cd06362 230 NARVVVLFCREDDIRGLLAAAKR 252 (452)
T ss_pred CCeEEEEEcChHHHHHHHHHHHH
Confidence 34556788888877777776643
No 94
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=24.14 E-value=1.6e+02 Score=23.72 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++.+.+.+.+.++. ..+.+|++|||..-
T Consensus 170 D~~~~~~l~~~l~~~~-~~~~tii~vsH~~~ 199 (216)
T TIGR00960 170 DPELSRDIMRLFEEFN-RRGTTVLVATHDIN 199 (216)
T ss_pred CHHHHHHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence 4456677777777753 34678999999854
No 95
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=24.12 E-value=5.3e+02 Score=24.10 Aligned_cols=96 Identities=9% Similarity=0.114 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHHHHHHHhhcCC
Q 027642 94 GQDDAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQKAICKYSRDE 173 (220)
Q Consensus 94 G~~qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~ 173 (220)
-..|+..+++.++..+++.-.++.+.-.--++.++.+.+.+.... ..+.....+... . ...++...+.++....
T Consensus 171 d~~q~~Ai~~l~~~f~wk~VaiI~~dd~yG~~~~~~~~~~~~~~G-i~I~~~~~i~~~--~---~~~d~~~~l~klk~~~ 244 (510)
T cd06364 171 DEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERD-ICIDFSELISQY--S---DEEEIQRVVEVIQNST 244 (510)
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEecCcchHHHHHHHHHHHHHCC-cEEEEEEEeCCC--C---CHHHHHHHHHHHHhcC
Confidence 346788888888776765544555554445666666666553111 112111111111 1 1234444444433244
Q ss_pred CCeEEEEeChHHHHHHHHHHhc
Q 027642 174 ILTVMCMGHNRGWEEAASMFTG 195 (220)
Q Consensus 174 ~~~vliVtH~~~i~~ll~~l~g 195 (220)
.+.|++.++......++..+..
T Consensus 245 a~vVvl~~~~~~~~~ll~qa~~ 266 (510)
T cd06364 245 AKVIVVFSSGPDLEPLIKEIVR 266 (510)
T ss_pred CeEEEEEeCcHHHHHHHHHHHH
Confidence 5667777888888888776643
No 96
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=24.11 E-value=1.4e+02 Score=24.19 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGW 186 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i 186 (220)
+-++.+.+.+.+.++..+.+.+|++++|....
T Consensus 178 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 209 (228)
T PRK10584 178 DRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209 (228)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 34556777777777543446789999999653
No 97
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=23.99 E-value=1.2e+02 Score=24.21 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=27.2
Q ss_pred ceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHH
Q 027642 141 EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGW 186 (220)
Q Consensus 141 ~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i 186 (220)
++-..++.... -+-++.+.+.+.++++. +.+.+|++|+|....
T Consensus 109 ~llLlDEPt~~--LD~~~~~~l~~~l~~~~-~~g~tvIivSH~~~~ 151 (176)
T cd03238 109 TLFILDEPSTG--LHQQDINQLLEVIKGLI-DLGNTVILIEHNLDV 151 (176)
T ss_pred CEEEEeCCccc--CCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHH
Confidence 44444443322 24456677777777753 357899999999754
No 98
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.83 E-value=1.6e+02 Score=24.07 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=29.6
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
+-++...+.+.+.++..+.+.+|++++|..- .+..+++.-+.+.+|.+.
T Consensus 172 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~---~~~~~~d~i~~l~~G~i~ 220 (233)
T cd03258 172 DPETTQSILALLRDINRELGLTIVLITHEME---VVKRICDRVAVMEKGEVV 220 (233)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH---HHHHhCCEEEEEECCEEE
Confidence 4455677777777754334679999999853 333344433445555553
No 99
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.45 E-value=84 Score=26.51 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=23.3
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+.+...++.+.+.++..+.+.++++|||..-
T Consensus 170 D~~~~~~l~~~l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 170 DPKGRRELLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 4456788888888875455679999999743
No 100
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.33 E-value=3.8e+02 Score=23.83 Aligned_cols=91 Identities=11% Similarity=0.043 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccce------------------------eecccccccc
Q 027642 97 DAIKVSQRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEV------------------------HFISSFYSVA 152 (220)
Q Consensus 97 qA~~l~~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i------------------------~~~~~l~~~~ 152 (220)
.+..++++|++..+ .+.++.||-..+.+=|+.+++.+++.+...+ -..+|..
T Consensus 165 ~~~~l~~~i~~~~~-~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii--- 240 (330)
T PRK02812 165 GSPVLLDYLASKNL-EDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMI--- 240 (330)
T ss_pred ChHHHHHHHHhcCC-CCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEcccc---
Confidence 34556677765422 3679999988888877777777632111100 0111111
Q ss_pred CCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHh
Q 027642 153 AMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFT 194 (220)
Q Consensus 153 ~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~ 194 (220)
-.|.+.....+.+++. ....-.+++||+-.-...+..+.
T Consensus 241 -~TG~T~~~a~~~L~~~--Ga~~v~~~~tH~v~s~~a~~~l~ 279 (330)
T PRK02812 241 -DTGGTICEGARLLRKE--GAKQVYACATHAVFSPPAIERLS 279 (330)
T ss_pred -CcHHHHHHHHHHHhcc--CCCeEEEEEEcccCChHHHHHHh
Confidence 1245555555555442 34566788899877666666664
No 101
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.31 E-value=1.5e+02 Score=24.35 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=29.0
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
+-++.+.+.+.+.++....+..|++|||... .+..+++.-+.+.+|.+.
T Consensus 167 D~~~~~~l~~~L~~~~~~~g~tvii~sH~~~---~~~~~~d~i~~l~~G~i~ 215 (242)
T cd03295 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDID---EAFRLADRIAIMKNGEIV 215 (242)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH---HHHHhCCEEEEEECCEEE
Confidence 4455677777777754334678999999864 223333333345555553
No 102
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=23.13 E-value=1.7e+02 Score=23.52 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=22.1
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++.+.+.+.+.++.. .+.+++++||...
T Consensus 164 D~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~ 193 (213)
T cd03235 164 DPKTQEDIYELLRELRR-EGMTILVVTHDLG 193 (213)
T ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 45567778888877643 5678999999854
No 103
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=23.10 E-value=1.6e+02 Score=24.08 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=29.6
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
+-++.+.+.+.+.++....+.+++++||..-.- .. ++.-+.+.++.+.
T Consensus 164 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~---~~-~d~i~~l~~G~i~ 211 (236)
T TIGR03864 164 DPASRAAIVAHVRALCRDQGLSVLWATHLVDEI---EA-DDRLVVLHRGRVL 211 (236)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH---hh-CCEEEEEeCCeEE
Confidence 445677777877775433467899999987542 22 3333445555543
No 104
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=23.06 E-value=1.5e+02 Score=24.24 Aligned_cols=79 Identities=10% Similarity=0.148 Sum_probs=41.6
Q ss_pred EEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhc
Q 027642 116 LSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTG 195 (220)
Q Consensus 116 ~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g 195 (220)
+|.-.++-..-|..+... .++-..++.... .+-++.+.+.+.+.++....+.++++++|..-. +..+++
T Consensus 130 LS~G~~qrv~laral~~~------p~lllLDEP~~g--LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~---~~~~~d 198 (232)
T PRK10771 130 LSGGQRQRVALARCLVRE------QPILLLDEPFSA--LDPALRQEMLTLVSQVCQERQLTLLMVSHSLED---AARIAP 198 (232)
T ss_pred CCHHHHHHHHHHHHHhcC------CCEEEEeCCccc--CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH---HHHhCC
Confidence 444444444444444322 344444443332 245567778888877643346799999998763 233333
Q ss_pred CCcccCCceE
Q 027642 196 AFIELKTCNA 205 (220)
Q Consensus 196 ~~~~~~~~s~ 205 (220)
.-+.+..+.+
T Consensus 199 ~i~~l~~g~i 208 (232)
T PRK10771 199 RSLVVADGRI 208 (232)
T ss_pred EEEEEECCEE
Confidence 3334444444
No 105
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.00 E-value=1.6e+02 Score=24.29 Aligned_cols=49 Identities=22% Similarity=0.155 Sum_probs=29.1
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
+.++.+.+.+.++++....+.+|++|||.... +..+++.-+.+..+.+.
T Consensus 163 D~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~---~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 163 DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ---AKRIGDYTAFLNKGILV 211 (241)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH---HHHhCCEEEEEeCCEEE
Confidence 44566777777776543346799999998542 33333433344555443
No 106
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=22.92 E-value=1.8e+02 Score=23.33 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=21.9
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++...+.+.++++. ..+.++++|||...
T Consensus 169 D~~~~~~l~~~l~~~~-~~~~tii~~tH~~~ 198 (214)
T TIGR02673 169 DPDLSERILDLLKRLN-KRGTTVIVATHDLS 198 (214)
T ss_pred CHHHHHHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence 4556777888887754 34678999999854
No 107
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=22.86 E-value=1.6e+02 Score=25.48 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=22.3
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
|-++..++.+.|+++..+.+.+|++.||..-
T Consensus 168 Dp~~~~~~~~~l~~l~~~g~~tvlissH~l~ 198 (293)
T COG1131 168 DPESRREIWELLRELAKEGGVTILLSTHILE 198 (293)
T ss_pred CHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH
Confidence 3356788888888865444468999999654
No 108
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.84 E-value=1.6e+02 Score=24.83 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=29.5
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
+-++.+.+.+.+.++....+.+++++||..- .+..+++.-+.+..|.+.
T Consensus 192 D~~~~~~l~~~l~~~~~~~g~tiii~tH~~~---~~~~~~d~v~~l~~G~i~ 240 (269)
T cd03294 192 DPLIRREMQDELLRLQAELQKTIVFITHDLD---EALRLGDRIAIMKDGRLV 240 (269)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH---HHHHhcCEEEEEECCEEE
Confidence 4456677777777754344679999999854 233344433344555543
No 109
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=22.35 E-value=1.7e+02 Score=24.60 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=26.9
Q ss_pred ceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 141 EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 141 ~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
++-+.++.... .+.++.+.+.+.|.++....+.+|+++||...
T Consensus 167 ~lllLDEPt~~--LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 167 RCLLLDEPTSA--LDIAHQVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred CEEEEcCCccc--CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34444443322 24556777888887764334678999999854
No 110
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=22.22 E-value=2.1e+02 Score=23.19 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++...+.+.++++....+.++++++|...
T Consensus 173 D~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 173 DSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456677788887764344689999999964
No 111
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=22.15 E-value=1.5e+02 Score=24.99 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=21.5
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++...+.+.+.++..+.+.+|++|+|..-
T Consensus 165 D~~~~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3445667777777654344678999999865
No 112
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=21.98 E-value=1.6e+02 Score=24.39 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=28.8
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
+-++.+.+.+.+.++....+.++++|+|..-. +..++..-+.+.++.+.
T Consensus 180 D~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~---~~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 180 DVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV---ARLLAQRLLVMQQGRVV 228 (253)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH---HHHhcCEEEEEECCEEE
Confidence 44556777777776543446799999998542 23333333344555543
No 113
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=21.87 E-value=1.8e+02 Score=23.75 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGW 186 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i 186 (220)
+-++.+.+.+.+.++..+.+.+|++++|....
T Consensus 169 D~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~ 200 (225)
T PRK10247 169 DESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200 (225)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEECChHH
Confidence 34556777777777543446789999999654
No 114
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=21.79 E-value=1.6e+02 Score=24.74 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++...+.+.++++....+.+|++|||..-
T Consensus 160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4456677777777653344678999999864
No 115
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=21.78 E-value=3.3e+02 Score=26.22 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=38.8
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEEEEEEe
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAALLETT 211 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~~l~~~ 211 (220)
+-|+.+.+.+.|+.| ++-|++|+|. ..++..++..-+.+.++.++.|+-.
T Consensus 514 D~dsl~AL~~Al~~F----~GGVv~VSHd---~~fi~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 514 DRDSLGALAKALKNF----NGGVVLVSHD---EEFISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred cHHHHHHHHHHHHhc----CCcEEEEECc---HHHHhhcCceeEEEcCCcEEeeecc
Confidence 567888888888876 3568999998 4677777777778888888887643
No 116
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=21.77 E-value=1.6e+02 Score=24.54 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=29.0
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
+.++.+.+.+.++++....+.+|+++||..-.- ..+++.-+.+.++.+.
T Consensus 183 D~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~---~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 183 DVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA---RLLAHRLLVMKQGRVV 231 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH---HHhcCEEEEEECCEEE
Confidence 445667777777765433467899999986433 2333333344555443
No 117
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=21.54 E-value=2e+02 Score=23.40 Aligned_cols=48 Identities=4% Similarity=0.116 Sum_probs=29.1
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNA 205 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~ 205 (220)
+-++...+.+.+.++....+.+++++||..- .+..+++.-+.+..+.+
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~---~~~~~~d~v~~l~~g~i 210 (230)
T TIGR03410 163 QPSIIKDIGRVIRRLRAEGGMAILLVEQYLD---FARELADRYYVMERGRV 210 (230)
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH---HHHHhCCEEEEEECCEE
Confidence 4456777888787754334678999999854 33334333334444444
No 118
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.24 E-value=1.7e+02 Score=23.94 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=29.7
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
+-++.+.+.+.++++....+.+|++++|.... +..+++.-+.+.+|.+.
T Consensus 176 D~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~---~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDL---AREYADRIVGLKDGRIV 224 (241)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH---HHHhCCEEEEEECCEEE
Confidence 34556777777777543346789999998543 33344443445555543
No 119
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.21 E-value=1.9e+02 Score=22.81 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=20.5
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNR 184 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~ 184 (220)
+-++.+.+.+.++++. ..+.+|++|+|..
T Consensus 159 D~~~~~~~~~~l~~~~-~~~~tili~sH~~ 187 (190)
T TIGR01166 159 DPAGREQMLAILRRLR-AEGMTVVISTHDV 187 (190)
T ss_pred CHHHHHHHHHHHHHHH-HcCCEEEEEeecc
Confidence 3455677777777753 3467999999974
No 120
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=20.96 E-value=96 Score=23.48 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=12.7
Q ss_pred eEEEEeChH-H---HHHHHHHHhc
Q 027642 176 TVMCMGHNR-G---WEEAASMFTG 195 (220)
Q Consensus 176 ~vliVtH~~-~---i~~ll~~l~g 195 (220)
.++||||+. . +..++..+.|
T Consensus 2 gIvivSHs~~lA~Gi~~~~~~~~g 25 (125)
T TIGR02364 2 GIVLVSHSKKIAEGIKELIKQMAG 25 (125)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHcC
Confidence 478999996 3 3444555554
No 121
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=20.86 E-value=1.6e+02 Score=27.55 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=20.5
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeCh
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHN 183 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~ 183 (220)
|.++.+.+.+.+.+. .++.++++|||.
T Consensus 502 D~~te~~I~~~l~~~--~~~~TvIiItHr 528 (529)
T TIGR02868 502 DAGTESELLEDLLAA--LSGKTVVVITHH 528 (529)
T ss_pred CHHHHHHHHHHHHHh--cCCCEEEEEecC
Confidence 556777788887764 456899999995
No 122
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=20.85 E-value=2.1e+02 Score=23.35 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=29.9
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAA 206 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~ 206 (220)
+-++...+.+.++++.. .+.++++|||... .+..+++.-+.+.+|.+.
T Consensus 175 D~~~~~~l~~~l~~~~~-~~~tii~vsH~~~---~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 175 NPEETEELAELIRELRE-RGITVLLVEHDMD---VVMSLADRVTVLDQGRVI 222 (236)
T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEecCHH---HHHHhCCEEEEEeCCEEE
Confidence 44567778888877543 4678999999854 333344443445555553
No 123
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=20.70 E-value=2.3e+02 Score=21.99 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=26.1
Q ss_pred ceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 141 EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 141 ~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
++-..++.... -+-++...+.+.++++. ..+.++++|+|..-
T Consensus 116 ~~lllDEPt~~--LD~~~~~~l~~~l~~~~-~~~~tii~~sh~~~ 157 (173)
T cd03246 116 RILVLDEPNSH--LDVEGERALNQAIAALK-AAGATRIVIAHRPE 157 (173)
T ss_pred CEEEEECCccc--cCHHHHHHHHHHHHHHH-hCCCEEEEEeCCHH
Confidence 44444443332 24455677777777753 34678999999864
No 124
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=20.60 E-value=2e+02 Score=23.62 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=21.8
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
+-++...+.+.+.++..+.+.+|+++||..-
T Consensus 146 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 146 DALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4456677777777654334678999999864
No 125
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=20.50 E-value=2.9e+02 Score=21.87 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=22.6
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHH
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGW 186 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i 186 (220)
+-++.+.+.+.++++. ..+.++++++|...+
T Consensus 166 D~~~~~~l~~~l~~~~-~~~~tii~~sh~~~~ 196 (206)
T TIGR03608 166 DPKNRDEVLDLLLELN-DEGKTIIIVTHDPEV 196 (206)
T ss_pred CHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHH
Confidence 4456777888887764 346789999999754
No 126
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=20.45 E-value=2e+02 Score=22.47 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=26.1
Q ss_pred ceeeccccccccCCCCccHHHHHHHHHHhhcCCCCeEEEEeChHH
Q 027642 141 EVHFISSFYSVAAMDGQTAEHLQKAICKYSRDEILTVMCMGHNRG 185 (220)
Q Consensus 141 ~i~~~~~l~~~~~p~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~ 185 (220)
++-..++.+.. .+.++.+.+.+.+.++..+.+.++++++|...
T Consensus 117 ~llllDEP~~~--LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 117 PILLLDEPTSH--LDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred CEEEEeCCccC--CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44444443322 24456777777777653232578999999865
No 127
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.42 E-value=1.7e+02 Score=25.05 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=28.5
Q ss_pred CCccHHHHHHHHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceE
Q 027642 155 DGQTAEHLQKAICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNA 205 (220)
Q Consensus 155 ~GEs~~~l~~ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~ 205 (220)
+-++.+.+.+.+.++....+.+|+++||..- .+..++..-+.+..|.+
T Consensus 182 D~~~~~~l~~~l~~~~~~~~~tiiiisH~~~---~~~~~~d~i~~l~~G~i 229 (289)
T PRK13645 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMD---QVLRIADEVIVMHEGKV 229 (289)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH---HHHHhCCEEEEEECCEE
Confidence 4456677777777754334678999999854 22333333334445544
No 128
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=20.27 E-value=4.5e+02 Score=25.12 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=28.6
Q ss_pred HHHHhhcCCCCeEEEEeChHHHHHHHHHHhcCCcccCCceEEEEE
Q 027642 165 AICKYSRDEILTVMCMGHNRGWEEAASMFTGAFIELKTCNAALLE 209 (220)
Q Consensus 165 ri~~~~~~~~~~vliVtH~~~i~~ll~~l~g~~~~~~~~s~~~l~ 209 (220)
++..++..-.++++||||- |.|+...+..-+.+..+.+..+.
T Consensus 191 WLe~~L~~~~gtviiVSHD---R~FLd~V~t~I~~ld~g~l~~y~ 232 (530)
T COG0488 191 WLEDYLKRYPGTVIVVSHD---RYFLDNVATHILELDRGKLTPYK 232 (530)
T ss_pred HHHHHHHhCCCcEEEEeCC---HHHHHHHhhheEEecCCceeEec
Confidence 4444443223489999998 78888888777777777665543
No 129
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=20.18 E-value=5.7e+02 Score=24.45 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=51.9
Q ss_pred CCCC--HhHHHHHHHHH-HHHHhCCCCcCEEEEcchHHHHHHHHHHHHHhcCCCccceeeccccccccCCCCccHHHHHH
Q 027642 88 RPLS--KAGQDDAIKVS-QRLQQLGWIPQLILSSDAVRTRQTLEIMQQHVQGFLEAEVHFISSFYSVAAMDGQTAEHLQK 164 (220)
Q Consensus 88 ~pLt--~~G~~qA~~l~-~~L~~~~~~~~~i~sSpl~Ra~qTA~~l~~~~~~~~~~~i~~~~~l~~~~~p~GEs~~~l~~ 164 (220)
..+. ..|.+++..++ +.+...+ +|.|+|-- -||+.|.+.+. +|..++.. +.-|+++
T Consensus 40 ~~~~~~~~~~~~~v~~~~~~~~~~~--~dviIsrG-----~ta~~i~~~~~-iPVv~i~~-------------s~~Dil~ 98 (538)
T PRK15424 40 ANITPIQLGFEKAVTYIRKRLATER--CDAIIAAG-----SNGAYLKSRLS-VPVILIKP-------------SGFDVMQ 98 (538)
T ss_pred ceEEehhhhHHHHHHHHHHHHhhCC--CcEEEECc-----hHHHHHHhhCC-CCEEEecC-------------CHhHHHH
Confidence 3355 78888888888 4465533 58888865 48999998764 54433332 2345555
Q ss_pred HHHHhhcCCCCeEEEEeChHHHHHH
Q 027642 165 AICKYSRDEILTVMCMGHNRGWEEA 189 (220)
Q Consensus 165 ri~~~~~~~~~~vliVtH~~~i~~l 189 (220)
.+... ....+++.||++..++..+
T Consensus 99 al~~a-~~~~~~iavv~~~~~~~~~ 122 (538)
T PRK15424 99 ALARA-RKLTSSIGVVTYQETIPAL 122 (538)
T ss_pred HHHHH-HhcCCcEEEEecCcccHHH
Confidence 55443 2445789999998877653
Done!