Query 027643
Match_columns 220
No_of_seqs 186 out of 1934
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 13:01:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02962 hydroxyacylglutathion 100.0 1.7E-33 3.7E-38 235.7 18.9 167 54-220 4-170 (251)
2 PLN02469 hydroxyacylglutathion 100.0 4.5E-29 9.8E-34 210.2 16.8 143 70-220 9-153 (258)
3 PLN02398 hydroxyacylglutathion 100.0 1.4E-27 3E-32 206.4 17.5 140 68-220 82-224 (329)
4 TIGR03413 GSH_gloB hydroxyacyl 99.9 1.6E-26 3.4E-31 193.8 16.6 138 68-219 5-143 (248)
5 PRK10241 hydroxyacylglutathion 99.9 1.4E-26 2.9E-31 194.6 14.9 138 68-220 7-145 (251)
6 KOG0813 Glyoxylase [General fu 99.9 2.1E-26 4.5E-31 191.3 13.2 145 67-220 7-157 (265)
7 KOG0814 Glyoxylase [General fu 99.9 3.5E-27 7.6E-32 182.8 7.3 152 60-219 8-159 (237)
8 PRK11921 metallo-beta-lactamas 99.8 9.6E-20 2.1E-24 162.3 14.6 130 67-207 27-169 (394)
9 COG0491 GloB Zn-dependent hydr 99.8 6.2E-19 1.3E-23 145.3 15.9 137 70-215 22-184 (252)
10 smart00849 Lactamase_B Metallo 99.8 1.4E-18 2.9E-23 137.1 16.1 127 70-207 3-149 (183)
11 PRK05452 anaerobic nitric oxid 99.8 1.5E-18 3.2E-23 157.9 14.3 129 67-206 29-172 (479)
12 TIGR00649 MG423 conserved hypo 99.8 1.3E-17 2.8E-22 149.9 15.0 129 72-208 13-166 (422)
13 PF00753 Lactamase_B: Metallo- 99.7 1.2E-16 2.5E-21 125.8 10.7 134 69-212 2-157 (194)
14 PRK11244 phnP carbon-phosphoru 99.6 6.6E-15 1.4E-19 123.4 13.5 120 70-203 34-165 (250)
15 COG0426 FpaA Uncharacterized f 99.6 5.4E-15 1.2E-19 129.2 13.1 131 67-208 30-173 (388)
16 PRK11539 ComEC family competen 99.6 3.2E-14 7E-19 136.1 16.4 127 66-203 505-642 (755)
17 TIGR03307 PhnP phosphonate met 99.6 2.4E-14 5.3E-19 119.1 12.5 119 71-203 25-155 (238)
18 TIGR02649 true_RNase_BN ribonu 99.6 9.1E-14 2E-18 119.7 14.6 113 69-186 13-150 (303)
19 TIGR00361 ComEC_Rec2 DNA inter 99.6 1.4E-13 3.1E-18 130.0 16.8 130 67-204 444-586 (662)
20 TIGR02651 RNase_Z ribonuclease 99.5 9.2E-14 2E-18 119.2 12.9 108 70-186 15-148 (299)
21 COG2333 ComEC Predicted hydrol 99.5 3.2E-13 6.8E-18 115.2 14.1 132 66-205 47-195 (293)
22 PRK00685 metal-dependent hydro 99.5 1.2E-13 2.6E-18 113.9 10.6 121 72-205 7-147 (228)
23 TIGR03675 arCOG00543 arCOG0054 99.5 1.2E-13 2.6E-18 129.3 11.8 127 71-204 186-350 (630)
24 PRK02113 putative hydrolase; P 99.5 2.4E-13 5.2E-18 114.0 11.5 116 71-203 33-172 (252)
25 PRK05184 pyrroloquinoline quin 99.5 1.7E-13 3.7E-18 118.1 10.7 120 71-201 37-199 (302)
26 COG0595 mRNA degradation ribon 99.5 4E-13 8.6E-18 123.3 13.0 127 71-205 20-171 (555)
27 PRK02126 ribonuclease Z; Provi 99.5 4.6E-13 9.9E-18 116.8 12.7 113 66-186 9-173 (334)
28 PRK04286 hypothetical protein; 99.5 4.7E-13 1E-17 115.2 12.1 126 69-202 11-187 (298)
29 TIGR02108 PQQ_syn_pqqB coenzym 99.5 2E-13 4.4E-18 117.6 9.4 121 73-202 38-200 (302)
30 PF12706 Lactamase_B_2: Beta-l 99.4 1.6E-13 3.6E-18 109.7 3.6 109 88-203 2-140 (194)
31 PF14597 Lactamase_B_5: Metall 99.4 2.9E-11 6.2E-16 95.0 13.5 129 61-208 9-144 (199)
32 COG1236 YSH1 Predicted exonucl 99.3 5.9E-12 1.3E-16 113.3 8.6 123 70-202 11-165 (427)
33 PRK00055 ribonuclease Z; Revie 99.3 9.9E-12 2.1E-16 104.6 9.5 66 72-145 19-93 (270)
34 COG1782 Predicted metal-depend 99.2 2.5E-11 5.4E-16 108.1 7.7 126 72-204 193-356 (637)
35 COG1237 Metal-dependent hydrol 99.2 5.4E-11 1.2E-15 98.6 8.0 71 71-146 20-94 (259)
36 COG1234 ElaC Metal-dependent h 99.0 5.1E-09 1.1E-13 89.9 12.5 66 71-144 18-92 (292)
37 PRK11709 putative L-ascorbate 99.0 2E-09 4.3E-14 94.7 9.3 90 111-204 109-231 (355)
38 PF13483 Lactamase_B_3: Beta-l 98.9 1.8E-09 3.9E-14 84.6 5.4 106 72-204 6-117 (163)
39 KOG1136 Predicted cleavage and 98.9 4.7E-09 1E-13 89.7 7.6 123 71-203 15-181 (501)
40 COG1235 PhnP Metal-dependent h 98.7 4E-08 8.6E-13 83.4 7.6 110 87-205 41-181 (269)
41 KOG1137 mRNA cleavage and poly 98.6 3E-08 6.5E-13 89.4 3.4 135 59-202 12-183 (668)
42 TIGR02650 RNase_Z_T_toga ribon 98.6 4.4E-07 9.5E-12 76.9 9.9 114 86-204 18-193 (277)
43 KOG1135 mRNA cleavage and poly 98.6 7E-07 1.5E-11 82.4 11.6 127 66-201 8-172 (764)
44 COG2220 Predicted Zn-dependent 98.5 7.5E-07 1.6E-11 75.0 9.9 124 72-203 13-162 (258)
45 KOG2121 Predicted metal-depend 98.3 9.2E-07 2E-11 82.4 5.0 122 74-202 462-629 (746)
46 COG2248 Predicted hydrolase (m 98.3 6.2E-06 1.3E-10 68.4 9.2 124 74-202 16-186 (304)
47 KOG4736 Uncharacterized conser 98.2 3.1E-06 6.8E-11 71.4 6.4 113 75-205 97-215 (302)
48 KOG1361 Predicted hydrolase in 97.8 3.7E-05 7.9E-10 69.5 6.5 88 111-205 112-209 (481)
49 COG2015 Alkyl sulfatase and re 97.8 6.9E-05 1.5E-09 67.4 7.8 107 74-184 127-292 (655)
50 PF02112 PDEase_II: cAMP phosp 97.7 0.00028 6.1E-09 61.6 9.1 61 68-131 12-99 (335)
51 PF13691 Lactamase_B_4: tRNase 96.9 0.0025 5.3E-08 42.0 4.7 46 74-127 13-63 (63)
52 PF14234 DUF4336: Domain of un 94.3 0.67 1.5E-05 39.7 10.4 122 75-206 22-163 (285)
53 COG5212 PDE1 Low-affinity cAMP 94.1 0.092 2E-06 44.5 4.7 88 111-202 112-233 (356)
54 KOG3798 Predicted Zn-dependent 88.1 2.5 5.3E-05 35.8 7.1 89 111-205 132-243 (343)
55 KOG3592 Microtubule-associated 86.4 0.97 2.1E-05 43.2 4.3 62 66-133 42-103 (934)
56 COG0462 PrsA Phosphoribosylpyr 53.4 31 0.00067 30.1 5.2 58 85-145 214-275 (314)
57 PF14572 Pribosyl_synth: Phosp 53.0 47 0.001 26.6 5.8 53 90-145 92-144 (184)
58 PRK02269 ribose-phosphate pyro 47.2 25 0.00055 30.6 3.8 56 86-145 218-278 (320)
59 PRK04923 ribose-phosphate pyro 46.7 24 0.00051 30.8 3.5 58 85-145 217-278 (319)
60 KOG1448 Ribose-phosphate pyrop 46.3 2E+02 0.0043 25.0 9.0 103 75-185 206-314 (316)
61 PLN02297 ribose-phosphate pyro 45.2 22 0.00048 31.1 3.1 37 85-122 230-270 (326)
62 PRK07199 phosphoribosylpyropho 41.5 25 0.00053 30.4 2.8 34 86-120 212-249 (301)
63 TIGR01091 upp uracil phosphori 41.2 53 0.0011 26.6 4.6 58 85-146 122-183 (207)
64 COG4566 TtrR Response regulato 40.9 65 0.0014 26.1 4.8 43 87-131 50-95 (202)
65 PRK00129 upp uracil phosphorib 36.5 1.2E+02 0.0025 24.6 5.9 58 85-146 124-185 (209)
66 PRK00553 ribose-phosphate pyro 35.0 39 0.00084 29.7 3.0 37 85-122 218-258 (332)
67 PRK02458 ribose-phosphate pyro 34.3 1E+02 0.0022 26.9 5.5 57 86-145 219-279 (323)
68 PF14681 UPRTase: Uracil phosp 31.6 51 0.0011 26.7 3.0 55 85-145 121-183 (207)
69 COG4359 Uncharacterized conser 30.6 52 0.0011 26.7 2.8 97 88-204 71-171 (220)
70 PTZ00145 phosphoribosylpyropho 27.7 62 0.0014 29.6 3.1 57 86-145 336-396 (439)
71 KOG1145 Mitochondrial translat 27.6 64 0.0014 30.6 3.2 50 119-177 159-213 (683)
72 KOG1138 Predicted cleavage and 27.4 1.6E+02 0.0035 27.7 5.6 93 111-210 96-250 (653)
73 PRK03092 ribose-phosphate pyro 25.1 79 0.0017 27.3 3.2 38 85-122 201-241 (304)
74 KOG2121 Predicted metal-depend 25.0 43 0.00092 32.5 1.6 47 85-132 72-118 (746)
75 PLN02335 anthranilate synthase 23.4 1.3E+02 0.0028 24.6 4.0 32 82-113 15-46 (222)
76 PF12000 Glyco_trans_4_3: Gkyc 23.3 1.8E+02 0.004 22.9 4.7 41 99-143 54-94 (171)
77 cd02791 MopB_CT_Nitrate-R-NapA 22.8 2.3E+02 0.005 20.1 5.0 64 119-184 15-83 (122)
78 PRK01259 ribose-phosphate pyro 22.2 77 0.0017 27.4 2.6 38 85-122 208-248 (309)
79 PRK02812 ribose-phosphate pyro 22.2 82 0.0018 27.6 2.8 38 85-122 230-270 (330)
80 PF08459 UvrC_HhH_N: UvrC Heli 21.2 56 0.0012 25.4 1.4 25 87-111 81-105 (155)
81 PRK00934 ribose-phosphate pyro 20.9 89 0.0019 26.7 2.7 37 85-121 204-243 (285)
82 PLN02541 uracil phosphoribosyl 20.4 1.5E+02 0.0033 24.8 3.9 60 86-147 158-221 (244)
83 cd01748 GATase1_IGP_Synthase T 20.2 1.5E+02 0.0031 23.5 3.7 23 89-111 2-24 (198)
84 cd00508 MopB_CT_Fdh-Nap-like T 20.1 3E+02 0.0065 19.3 5.1 64 119-184 15-83 (120)
No 1
>PLN02962 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=1.7e-33 Score=235.74 Aligned_cols=167 Identities=86% Similarity=1.284 Sum_probs=143.8
Q ss_pred CCCCCCCcEEEEEeecCCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHh
Q 027643 54 SSSSSSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (220)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~ 133 (220)
++..+.+|.|++++..+..+|||+|.+.+..+++++|||||......+++.+++.+.++.+||+||.|+||++|+..|++
T Consensus 4 ~~~~~~~m~~~~~~~~~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~ 83 (251)
T PLN02962 4 SSSSSSKLLFRQLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKT 83 (251)
T ss_pred CCCCCCceEEEEeecCCceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHH
Confidence 34455789999999999999999998742124689999999645788889999999999999999999999999999999
Q ss_pred hCCCCEEEeecCCCCCCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCCcccCCCC
Q 027643 134 KVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQ 213 (220)
Q Consensus 134 ~~p~~~v~~~~~~~~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~~~~d~~ 213 (220)
++|++++++++......+..+++|+.+.+|+.+++++++||||+|+++|++.+..++++.+++|+||++|.+++||+|++
T Consensus 84 ~~~~a~v~~~~~~~~~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~~ 163 (251)
T PLN02962 84 KLPGVKSIISKASGSKADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDFQ 163 (251)
T ss_pred HCCCCeEEeccccCCCCCEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCCC
Confidence 98899999987765556678899999999999999999999999999999864222245679999999999999999999
Q ss_pred CCCCCCC
Q 027643 214 VLGLKTT 220 (220)
Q Consensus 214 ~~~~~~~ 220 (220)
+|++++|
T Consensus 164 ~g~~~~l 170 (251)
T PLN02962 164 GGSSDQL 170 (251)
T ss_pred CCCHHHH
Confidence 9998653
No 2
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.96 E-value=4.5e-29 Score=210.15 Aligned_cols=143 Identities=34% Similarity=0.512 Sum_probs=120.7
Q ss_pred CCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecCCC-C
Q 027643 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG-S 148 (220)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~~-~ 148 (220)
..+|++|+|.+.. +++++|||||. .+.+.+.+++.+.++++|++||.|+||++|+..|++.+|+++||++.... .
T Consensus 9 ~~dNy~Yli~d~~--~~~~vlIDp~~--~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~~~ 84 (258)
T PLN02469 9 LEDNYAYLIIDES--TKDAAVVDPVD--PEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDNVK 84 (258)
T ss_pred ccceEEEEEEeCC--CCeEEEECCCC--hHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhcCC
Confidence 3566799998743 45899999994 78899999999999999999999999999999999999899999986532 3
Q ss_pred CCcEEcCCCCEEEeCC-eEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCCcccCCCCCCCCCCC
Q 027643 149 KADLHVEHGDKVSFGD-LFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQVLGLKTT 220 (220)
Q Consensus 149 ~~~~~~~~g~~l~lg~-~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~~~~d~~~~~~~~~ 220 (220)
...+.+++|+.+.+|+ ..++++++||||+||++|++.+. .++.++|||||++|.+||||+ .+|++++|
T Consensus 85 ~~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~--~~~~~~lFtGDtLf~~g~Gr~--~~g~~~~~ 153 (258)
T PLN02469 85 GCTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGK--EGEDPAVFTGDTLFIAGCGKF--FEGTAEQM 153 (258)
T ss_pred CCCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccC--CCCCCEEEecCcccCCCcCCC--CCCCHHHH
Confidence 3457789999999995 78999999999999999998631 013469999999999999996 58887654
No 3
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.96 E-value=1.4e-27 Score=206.41 Aligned_cols=140 Identities=29% Similarity=0.405 Sum_probs=120.7
Q ss_pred ecCCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecCC-
Q 027643 68 EKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS- 146 (220)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~- 146 (220)
....+|++|+|.++. ++++++||||. ...+.+.+++.+.++++|++||.|+||++|+..|++++ +++|++++..
T Consensus 82 p~l~dNy~Yli~d~~--t~~~~vVDP~~--a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~-ga~V~g~~~~~ 156 (329)
T PLN02398 82 PCLKDNYAYLLHDED--TGTVGVVDPSE--AVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY-GAKVIGSAVDK 156 (329)
T ss_pred eeeCceEEEEEEECC--CCEEEEEcCCC--HHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc-CCEEEEehHHh
Confidence 446778999998753 46789999995 78899999999999999999999999999999999998 7999998763
Q ss_pred --CCCCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCCcccCCCCCCCCCCC
Q 027643 147 --GSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQVLGLKTT 220 (220)
Q Consensus 147 --~~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~~~~d~~~~~~~~~ 220 (220)
....+..+.+|+.+.+|+.+++++++||||+|+++|++. +.++||+||++|.+++|++ .+|++++|
T Consensus 157 ~~i~~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI~~~~~------~~~vLFtGDtLf~~g~Gr~--feg~~~~~ 224 (329)
T PLN02398 157 DRIPGIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYFP------GSGAIFTGDTLFSLSCGKL--FEGTPEQM 224 (329)
T ss_pred hhccCCcEEeCCCCEEEECCeEEEEEeCCCcCCCCEEEEEC------CCCEEEECCCcCCCCcCCC--CCCCHHHH
Confidence 233467889999999999999999999999999999984 3579999999999999997 47777653
No 4
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.95 E-value=1.6e-26 Score=193.83 Aligned_cols=138 Identities=32% Similarity=0.465 Sum_probs=118.7
Q ss_pred ecCCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecCCC
Q 027643 68 EKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG 147 (220)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~~ 147 (220)
+.-.+|++|+|.++ .++++|||||. ...+.+.+++.+.++++|++||.|+||++|+..|++.+ +++||+++...
T Consensus 5 ~~~~dN~~yli~~~---~~~~ilID~g~--~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~-~~~V~~~~~~~ 78 (248)
T TIGR03413 5 PALSDNYIWLLHDP---DGQAAVVDPGE--AEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAF-PAPVYGPAEER 78 (248)
T ss_pred cccccEEEEEEEcC---CCCEEEEcCCC--hHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHC-CCeEEeccccc
Confidence 34577899999884 35899999995 57788999999999999999999999999999999998 49999987642
Q ss_pred -CCCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCCcccCCCCCCCCCC
Q 027643 148 -SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQVLGLKT 219 (220)
Q Consensus 148 -~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~~~~d~~~~~~~~ 219 (220)
......+.+|+.+.+|+.+++++++||||+|+++|+++ +.+++|+||++|.+++|++ .+|++++
T Consensus 79 ~~~~~~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~------~~~~lftGDtl~~~g~g~~--~~~~~~~ 143 (248)
T TIGR03413 79 IPGITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLP------DSPALFCGDTLFSAGCGRL--FEGTPEQ 143 (248)
T ss_pred CCCCcEEeCCCCEEEECCEEEEEEECCCCCcccEEEEEC------CCCEEEEcCccccCCcCCC--CCCCHHH
Confidence 23457889999999999999999999999999999984 3579999999999999997 3677654
No 5
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.94 E-value=1.4e-26 Score=194.56 Aligned_cols=138 Identities=29% Similarity=0.389 Sum_probs=118.6
Q ss_pred ecCCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecCCC
Q 027643 68 EKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG 147 (220)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~~ 147 (220)
+...+|++|++.+. +++++|||||. ...+++.+++.+.++++|++||.|+||++|+..|++++|+++||++....
T Consensus 7 ~~~~dNy~~li~~~---~~~~ilIDpg~--~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~ 81 (251)
T PRK10241 7 PAFDDNYIWVLNDE---AGRCLIVDPGE--AEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQ 81 (251)
T ss_pred eeecceEEEEEEcC---CCcEEEECCCC--hHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEeccccc
Confidence 34567889999875 46799999996 67889999999999999999999999999999999999889999986543
Q ss_pred C-CCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCCcccCCCCCCCCCCC
Q 027643 148 S-KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQVLGLKTT 220 (220)
Q Consensus 148 ~-~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~~~~d~~~~~~~~~ 220 (220)
. ...+.+.+|+.+.+++.+++++++||||+|+++|+.+ .++||||++|.++|||+ .+|++++|
T Consensus 82 ~~~~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~~--------~~lFtGDtlf~~g~gr~--f~g~~~~~ 145 (251)
T PRK10241 82 DKGTTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFSK--------PYLFCGDTLFSGGCGRL--FEGTASQM 145 (251)
T ss_pred ccCCceEeCCCCEEEeCCcEEEEEEcCCCCccceeeecC--------CcEEEcCeeccCCcCCC--CCCCHHHH
Confidence 2 3456788999999999999999999999999999742 47999999999999997 46776653
No 6
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.94 E-value=2.1e-26 Score=191.28 Aligned_cols=145 Identities=30% Similarity=0.439 Sum_probs=120.8
Q ss_pred eecCCCcEEEEEEe-cCCCCCcEEEEeCCCCChHHHHHHHHH---cCCCccEEEcCCCCccccCChHHHHhhCC-CCEEE
Q 027643 67 FEKESSTYTYLLAD-VNHPDKPALLIDPVDKTVDRDLNVIKE---LGLKLVYAMNTHVHADHVTGTGLIKSKVP-GVKSI 141 (220)
Q Consensus 67 ~~~~~~~~~~li~~-~~~~~~~~ilID~G~~~~~~~~~~l~~---~~~~i~~I~iTH~H~DHigG~~~~~~~~p-~~~v~ 141 (220)
+...++||+||+.+ .. ...+.++||.. ++.+...+++ .+.++.+||.||+||||+||+..|.+..| +++++
T Consensus 7 ~~~~~~Ny~YLl~~~~~--~~~a~~vDP~~--pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~ 82 (265)
T KOG0813|consen 7 LPTLQDNYMYLLGDGDK--TIDADLVDPAE--PEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVI 82 (265)
T ss_pred ccccCCceEEEEecccc--eeeeeeecCcc--hHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEe
Confidence 56688999999987 32 45566777775 6777777776 67889999999999999999999999855 88898
Q ss_pred eec-CCCCCCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCCcccCCCCCCCCCCC
Q 027643 142 ISK-ASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQVLGLKTT 220 (220)
Q Consensus 142 ~~~-~~~~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~~~~d~~~~~~~~~ 220 (220)
.+. .......+.+++|+.+.++|.+|+++++||||.||+||++.+ ..+.+.+|+||++|..||||+ -+|++++|
T Consensus 83 g~~~~r~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~---~~~e~~iFtGDtlf~~GcG~~--FEgt~~~M 157 (265)
T KOG0813|consen 83 GGADDRIPGITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTE---STGERAIFTGDTLFGAGCGRF--FEGTAEQM 157 (265)
T ss_pred cCChhcCccccccCCCCcEEEECCEEEEEEeCCCccCCcEEEEeec---CCCCCeEEeCCceeecCccch--hcCCHHHH
Confidence 884 444455667899999999999999999999999999999974 246789999999999999977 47776655
No 7
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=99.94 E-value=3.5e-27 Score=182.81 Aligned_cols=152 Identities=66% Similarity=1.017 Sum_probs=140.3
Q ss_pred CcEEEEEeecCCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCE
Q 027643 60 KLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVK 139 (220)
Q Consensus 60 ~l~~~~~~~~~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~ 139 (220)
.+.|++++.....+++|++.+.. .+++++|||-..++.+-.+.+++.|+++.|-+.||.|.|||.|-..++..+|+++
T Consensus 8 ~~~frqlfe~~SsTytYll~d~~--~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~k 85 (237)
T KOG0814|consen 8 APIFRQLFEFESSTYTYLLGDHK--TGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCK 85 (237)
T ss_pred cHHHHHHhccccceEEEEeeeCC--CCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHhcccHH
Confidence 45677788999999999999864 7899999999766777789999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCCcccCCCCCCCCCC
Q 027643 140 SIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQVLGLKT 219 (220)
Q Consensus 140 v~~~~~~~~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~~~~d~~~~~~~~ 219 (220)
-++++..+.+.+..+++|+.+++|++.+++..+||||+|++.|...+ .++.|+||++...||||.||..|+++.
T Consensus 86 SVis~~SGakAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d------~~~aFTGDalLIRgCGRTDFQqG~~~~ 159 (237)
T KOG0814|consen 86 SVISSASGAKADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEHD------LRMAFTGDALLIRGCGRTDFQQGCPAS 159 (237)
T ss_pred HHhhhccccccccccCCCCEEEEccEEEEEecCCCCCCceEEEEecC------cceeeecceeEEeccCccchhccChHH
Confidence 99999999999999999999999999999999999999999999854 579999999999999999999999864
No 8
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.83 E-value=9.6e-20 Score=162.26 Aligned_cols=130 Identities=22% Similarity=0.241 Sum_probs=105.2
Q ss_pred eecCCCcEEEEEEecCCCCCcEEEEeCCCC-ChHHHHHHHHHc-CC-CccEEEcCCCCccccCChHHHHhhCCCCEEEee
Q 027643 67 FEKESSTYTYLLADVNHPDKPALLIDPVDK-TVDRDLNVIKEL-GL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (220)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~ilID~G~~-~~~~~~~~l~~~-~~-~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~ 143 (220)
...+...|||+|.+ ++.+|||||.. ..+.+.+.+++. +. +|++|++||.|+||++|++.+.+.+|+++|+++
T Consensus 27 ~~~g~~~NsyLI~~-----~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~ 101 (394)
T PRK11921 27 THRGSSYNSYLIKD-----EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCT 101 (394)
T ss_pred cCCceEEEEEEEeC-----CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEEC
Confidence 34567789999975 45899999953 356677777664 43 599999999999999999999999999999998
Q ss_pred cCCC---------CCCcEEcCCCCEEEeCCeEEEEEECCC-CCCCCEEEEEccCCCCCCCcEEEEcCccccCCc
Q 027643 144 KASG---------SKADLHVEHGDKVSFGDLFLEVRATPG-HTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGC 207 (220)
Q Consensus 144 ~~~~---------~~~~~~~~~g~~l~lg~~~i~~~~~pG-Ht~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~ 207 (220)
+... ......+++|+++++|+.+++++++|| |++|++++++ ++.++|||||++....+
T Consensus 102 ~~~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~------~~~~vLFsgD~fG~~~~ 169 (394)
T PRK11921 102 KNGAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYL------TGDNILFSNDAFGQHYA 169 (394)
T ss_pred HHHHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEE------cCCCEEEecCccccccc
Confidence 6421 113467889999999999999999998 9999999998 45689999998665443
No 9
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.82 E-value=6.2e-19 Score=145.33 Aligned_cols=137 Identities=32% Similarity=0.454 Sum_probs=104.5
Q ss_pred CCCcEEEEEEecCCCCCcEEEEeCCCCC--hHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecCC-
Q 027643 70 ESSTYTYLLADVNHPDKPALLIDPVDKT--VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS- 146 (220)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~ilID~G~~~--~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~- 146 (220)
...++++++... .+..+|||||... ...+.+.+.+.+.++++|++||.|+||++|+..|.+.++.++++..+..
T Consensus 22 ~~~~~~~~~~~~---~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~ 98 (252)
T COG0491 22 LSGNSVYLLVDG---EGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVP 98 (252)
T ss_pred cccccEEEEEcC---CCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhh
Confidence 344455666652 2379999999754 4778888888888899999999999999999999887644677333221
Q ss_pred ---------------------CCCCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccC
Q 027643 147 ---------------------GSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (220)
Q Consensus 147 ---------------------~~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~ 205 (220)
.......+.+++.+.+++..++++++||||+|+++|++++ .+++|+||+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~------~~~l~~gD~~~~~ 172 (252)
T COG0491 99 LLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLED------GGVLFTGDTLFAG 172 (252)
T ss_pred hhhhcccccccccccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECC------ccEEEecceeccC
Confidence 0122345568899999999999999999999999999964 2399999999988
Q ss_pred C--cccCCCCCC
Q 027643 206 G--CGRTDFQVL 215 (220)
Q Consensus 206 ~--~~~~d~~~~ 215 (220)
. .++.+++..
T Consensus 173 ~~~~~~~~~~~~ 184 (252)
T COG0491 173 DTGVGRLDLPGG 184 (252)
T ss_pred CCCCccccCCCC
Confidence 4 566655443
No 10
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.81 E-value=1.4e-18 Score=137.15 Aligned_cols=127 Identities=30% Similarity=0.463 Sum_probs=102.9
Q ss_pred CCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC-CccEEEcCCCCccccCChHHHHhhCCCCEEEeecCCC-
Q 027643 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG- 147 (220)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~-~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~~- 147 (220)
...++|++|.. +++.+|||||......+.+.+++.+. ++++||+||.|+||++|++.+.+. +++++++++...
T Consensus 3 ~~~~~~~li~~----~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-~~~~i~~~~~~~~ 77 (183)
T smart00849 3 GVGVNSYLVEG----DGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-PGAPVYAPEGTAE 77 (183)
T ss_pred ccceeEEEEEe----CCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-CCCcEEEchhhhH
Confidence 45678999988 57899999995444456566777654 599999999999999999999887 588999875421
Q ss_pred ------------------CCCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCCc
Q 027643 148 ------------------SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGC 207 (220)
Q Consensus 148 ------------------~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~ 207 (220)
......++.++++.+++.++++++++||++++++++++ +.+++|+||+.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~------~~~vl~~gD~~~~~~~ 149 (183)
T smart00849 78 LLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLP------EGKILFTGDLLFSGGI 149 (183)
T ss_pred HHhccchhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEEC------CCCEEEECCeeeccCC
Confidence 12235678899999999999999999999999999984 4789999999987763
No 11
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.79 E-value=1.5e-18 Score=157.87 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=103.3
Q ss_pred eecCCCcEEEEEEecCCCCCcEEEEeCCCC-ChHHHHHHHHHc-C-CCccEEEcCCCCccccCChHHHHhhCCCCEEEee
Q 027643 67 FEKESSTYTYLLADVNHPDKPALLIDPVDK-TVDRDLNVIKEL-G-LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (220)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~ilID~G~~-~~~~~~~~l~~~-~-~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~ 143 (220)
...+...|+|||.+ ++.+|||+|.. ...++++.+++. + .+|++||+||.|.||++|++.+++++|+++|+++
T Consensus 29 ~~~G~t~NsYLI~~-----~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s 103 (479)
T PRK05452 29 TLRGSSYNSYLIRE-----EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCT 103 (479)
T ss_pred cCCCcEEEEEEEEC-----CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEEC
Confidence 35667779999985 46899999953 356677777643 3 3699999999999999999999999899999998
Q ss_pred cCCC----------CCCcEEcCCCCEEEeC-CeEEEEEECCC-CCCCCEEEEEccCCCCCCCcEEEEcCccccCC
Q 027643 144 KASG----------SKADLHVEHGDKVSFG-DLFLEVRATPG-HTLGCVTYVSGEGPDQPQPRMAFTGDALLIRG 206 (220)
Q Consensus 144 ~~~~----------~~~~~~~~~g~~l~lg-~~~i~~~~~pG-Ht~gs~~~~~~~~~~~~~~~~lftGD~~~~~~ 206 (220)
+... ......+++|+.+.+| +.+++++++|+ |++|++++++ ++.++|||||++...+
T Consensus 104 ~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~------~~~~vLFsgD~fG~~~ 172 (479)
T PRK05452 104 ANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYL------TGDAVLFSNDAFGQHY 172 (479)
T ss_pred HHHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEE------cCCCEEEecccccCCC
Confidence 6431 1134678899999999 58999999996 9999999998 4568999999855433
No 12
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.76 E-value=1.3e-17 Score=149.85 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=102.2
Q ss_pred CcEEEEEEecCCCCCcEEEEeCCCCChH-HH---------HHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEE
Q 027643 72 STYTYLLADVNHPDKPALLIDPVDKTVD-RD---------LNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSI 141 (220)
Q Consensus 72 ~~~~~li~~~~~~~~~~ilID~G~~~~~-~~---------~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~ 141 (220)
+.|||+|.. +++.+|||||..... .+ .+.+++...++++||+||.|.||++|++.+.+.++..+||
T Consensus 13 G~n~~ll~~----~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy 88 (422)
T TIGR00649 13 GKNMYVVEI----DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIY 88 (422)
T ss_pred CCeEEEEEE----CCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEE
Confidence 788999987 578999999964211 11 3456666668999999999999999999998887557899
Q ss_pred eecCCC--------------CCCcEEcCCCCEEEeC-CeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCC
Q 027643 142 ISKASG--------------SKADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRG 206 (220)
Q Consensus 142 ~~~~~~--------------~~~~~~~~~g~~l~lg-~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~ 206 (220)
+++.+. ......++.++.+++| +++++++++++|.+|+++|+++. ++++++||||+.+.+.
T Consensus 89 ~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~----~~~~ivytGD~~~~~~ 164 (422)
T TIGR00649 89 GTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHT----PLGYIVYTGDFKFDNT 164 (422)
T ss_pred eCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEe----CCcEEEECCCcCCCCC
Confidence 886421 1234578889999997 59999999997789999999975 5678999999998664
Q ss_pred cc
Q 027643 207 CG 208 (220)
Q Consensus 207 ~~ 208 (220)
..
T Consensus 165 ~~ 166 (422)
T TIGR00649 165 PV 166 (422)
T ss_pred cc
Confidence 43
No 13
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.70 E-value=1.2e-16 Score=125.85 Aligned_cols=134 Identities=23% Similarity=0.247 Sum_probs=96.0
Q ss_pred cCCCcEEEEEEecCCCCCcEEEEeCCCCChHHHH---HHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecC
Q 027643 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDL---NVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (220)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~---~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~ 145 (220)
+..++|||+|.. +++.+|||||........ ........+|++||+||.|+||++|+..|.++++...+.....
T Consensus 2 ~~~~~n~~li~~----~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~ 77 (194)
T PF00753_consen 2 GEGGSNSYLIEG----GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSAD 77 (194)
T ss_dssp SSEEEEEEEEEE----TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHH
T ss_pred CCeeEEEEEEEE----CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeecccc
Confidence 356789999997 689999999965322222 2233345579999999999999999999999985444443322
Q ss_pred CC-------------------CCCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCC
Q 027643 146 SG-------------------SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRG 206 (220)
Q Consensus 146 ~~-------------------~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~ 206 (220)
.. ...............+...+.....++|+.+++++++ ++.+++|+||+++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vlftGD~~~~~~ 151 (194)
T PF00753_consen 78 AAKAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYL------PGGKVLFTGDLLFSNE 151 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEE------TTTTEEEEETTSCTTT
T ss_pred ccccccccccccccccccccccccceeeecccccccccccccceeccccCCcceEEEe------CCCcEEEeeeEeccCC
Confidence 10 0111223344445556778888889999999999998 5679999999999887
Q ss_pred cccCCC
Q 027643 207 CGRTDF 212 (220)
Q Consensus 207 ~~~~d~ 212 (220)
......
T Consensus 152 ~~~~~~ 157 (194)
T PF00753_consen 152 HPNPDP 157 (194)
T ss_dssp SSSSST
T ss_pred cccccc
Confidence 777654
No 14
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.63 E-value=6.6e-15 Score=123.43 Aligned_cols=120 Identities=17% Similarity=0.087 Sum_probs=88.7
Q ss_pred CCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhh-CCCCEEEeecCCC-
Q 027643 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSK-VPGVKSIISKASG- 147 (220)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~-~p~~~v~~~~~~~- 147 (220)
.....+++|.. ++..+|||||.. .+.+.+ ...++++||+||.|+||++|+..+... .+..+||+++...
T Consensus 34 ~r~~~s~li~~----~~~~iLiD~G~~---~~~~~~--~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~ 104 (250)
T PRK11244 34 RRRPCSALIEF----NGARTLIDAGLP---DLAERF--PPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEG 104 (250)
T ss_pred CcceeEEEEEE----CCCEEEEECCCh---HHhhcC--CcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhh
Confidence 34556788877 577899999953 121111 123589999999999999999877432 2457888876421
Q ss_pred ---------CCC-cEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccc
Q 027643 148 ---------SKA-DLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALL 203 (220)
Q Consensus 148 ---------~~~-~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~ 203 (220)
... ...+++++.+++++++++++.++ |+.++++|+++. ++++++|+||+.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~I~~~~~~-H~~~s~g~~i~~----~~~~i~ysgDt~~ 165 (250)
T PRK11244 105 CDDLFKHPGILDFSHPLEPFEPFDLGGLQVTPLPLN-HSKLTFGYLLET----AHSRVAYLTDTVG 165 (250)
T ss_pred HHHHhcCccccccccccCCCCCeeECCEEEEEEeeC-CCcceeEEEEec----CCeEEEEEcCCCC
Confidence 011 13477889999999999999997 999999999986 6789999999964
No 15
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.62 E-value=5.4e-15 Score=129.22 Aligned_cols=131 Identities=23% Similarity=0.312 Sum_probs=109.1
Q ss_pred eecCCCcEEEEEEecCCCCCcEEEEeCCC-CChHHHHHHHHHc-CC-CccEEEcCCCCccccCChHHHHhhCCCCEEEee
Q 027643 67 FEKESSTYTYLLADVNHPDKPALLIDPVD-KTVDRDLNVIKEL-GL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (220)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~ilID~G~-~~~~~~~~~l~~~-~~-~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~ 143 (220)
...+...|+|||.+ ++.+||||+. ...+++++.+++. +. +|+||+++|..+||++.++.+++.+|+++|+++
T Consensus 30 ~~~GttyNSYLI~~-----~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s 104 (388)
T COG0426 30 TPRGTTYNSYLIVG-----DKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICS 104 (388)
T ss_pred cCCCceeeeEEEeC-----CcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEee
Confidence 35678889999995 7789999984 3467777888776 33 499999999999999999999999999999999
Q ss_pred cCCC---------CCCcEEcCCCCEEEeCCeEEEEEECC-CCCCCCEEEEEccCCCCCCCcEEEEcCccccCCcc
Q 027643 144 KASG---------SKADLHVEHGDKVSFGDLFLEVRATP-GHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCG 208 (220)
Q Consensus 144 ~~~~---------~~~~~~~~~g~~l~lg~~~i~~~~~p-GHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~~ 208 (220)
+... ......++.|+.+++||.+++++.+| -|.||+++.+. +..++|||+|++-.--|.
T Consensus 105 ~~~~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd------~~~kILFS~D~fG~h~~~ 173 (388)
T COG0426 105 KLAARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYD------PEDKILFSCDAFGAHVCD 173 (388)
T ss_pred HHHHHHHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEee------cCCcEEEccccccccccc
Confidence 7531 11157889999999999999999886 49999999996 567999999998766665
No 16
>PRK11539 ComEC family competence protein; Provisional
Probab=99.59 E-value=3.2e-14 Score=136.09 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=100.9
Q ss_pred EeecCCCcEEEEEEecCCCCCcEEEEeCCCC------ChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCE
Q 027643 66 TFEKESSTYTYLLADVNHPDKPALLIDPVDK------TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVK 139 (220)
Q Consensus 66 ~~~~~~~~~~~li~~~~~~~~~~ilID~G~~------~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~ 139 (220)
+++. +++.+.+|.. +++++|||+|.. ..+.+...|+..|.++|+|++||.|.||++|+..+.+.+|..+
T Consensus 505 ~lDV-GqG~a~li~~----~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~~~ 579 (755)
T PRK11539 505 MLDV-GHGLAVVIER----NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPMAW 579 (755)
T ss_pred EEEc-cCceEEEEEE----CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCcce
Confidence 3344 4445667776 588999999952 1356788999999999999999999999999999999998888
Q ss_pred EEeecCCCCCCcEEcCCCCEEEeCCeEEEEEECCCCC-----CCCEEEEEccCCCCCCCcEEEEcCccc
Q 027643 140 SIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHT-----LGCVTYVSGEGPDQPQPRMAFTGDALL 203 (220)
Q Consensus 140 v~~~~~~~~~~~~~~~~g~~l~lg~~~i~~~~~pGHt-----~gs~~~~~~~~~~~~~~~~lftGD~~~ 203 (220)
++.+.... .......|+.+++++.++++++.++|. ++|+++.++. ++.+++|+||...
T Consensus 580 i~~~~~~~--~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~----~~~~~LltGDi~~ 642 (755)
T PRK11539 580 IRSPLNWA--NHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDD----GKHSILLTGDLEA 642 (755)
T ss_pred eeccCccc--CcccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEE----CCEEEEEEeCCCh
Confidence 88764221 123457899999999999999887654 5688888875 6889999999854
No 17
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.58 E-value=2.4e-14 Score=119.12 Aligned_cols=119 Identities=17% Similarity=0.064 Sum_probs=87.0
Q ss_pred CCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhC-CCCEEEeecCCC--
Q 027643 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKASG-- 147 (220)
Q Consensus 71 ~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~-p~~~v~~~~~~~-- 147 (220)
....|++|.. +++.+|||||... +.+.+ ...++++||+||.|+||++|+..+.... +..+||+++...
T Consensus 25 r~~~s~~i~~----~~~~iliD~G~~~---~~~~~--~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~ 95 (238)
T TIGR03307 25 RQPCSAVIEF----NGARTLIDAGLTD---LAERF--PPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGC 95 (238)
T ss_pred CcceEEEEEE----CCcEEEEECCChh---Hhhcc--CccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhH
Confidence 3445777876 5778999999531 21111 1235899999999999999997664332 357888875421
Q ss_pred --------CCCc-EEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccc
Q 027643 148 --------SKAD-LHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALL 203 (220)
Q Consensus 148 --------~~~~-~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~ 203 (220)
.... ..+..++.+.+++++|+++.+. |+.++++|.++. ++++++|+||+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~g~~i~~----~~~~i~y~gDt~~ 155 (238)
T TIGR03307 96 DDLFKHPGILDFSKPLEAFEPFDLGGLRVTPLPLV-HSKLTFGYLLET----DGQRVAYLTDTAG 155 (238)
T ss_pred HHHhcCcccccccccccCCceEEECCEEEEEEecC-CCCcceEEEEec----CCcEEEEEecCCC
Confidence 0111 2367789999999999999987 998999999985 7889999999954
No 18
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.56 E-value=9.1e-14 Score=119.73 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=80.3
Q ss_pred cCCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC---CccEEEcCCCCccccCChHHHHhh--C----CCCE
Q 027643 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSK--V----PGVK 139 (220)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~---~i~~I~iTH~H~DHigG~~~~~~~--~----p~~~ 139 (220)
...+++||+|...+.+.++.+|||||.+. ...+.+.++ ++++||+||.|+||++|++.|... + ...+
T Consensus 13 ~~r~~s~~lv~~~~~~~~~~iLiD~G~g~----~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~ 88 (303)
T TIGR02649 13 RTRNVTAILLNLQHPTQSGLWLFDCGEGT----QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLT 88 (303)
T ss_pred CCCCccEEEEEccCCCCCCEEEEECCccH----HHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeE
Confidence 45667788887531112468999999763 234444444 489999999999999999987532 1 2467
Q ss_pred EEeecCCC----------------CCCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEcc
Q 027643 140 SIISKASG----------------SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGE 186 (220)
Q Consensus 140 v~~~~~~~----------------~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~ 186 (220)
||+++... ....+.+.+++.+..++++++++.+. |+..+++|.++.
T Consensus 89 Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~~ 150 (303)
T TIGR02649 89 IYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIEE 150 (303)
T ss_pred EEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEcc-CccceEEEEEec
Confidence 88876421 01124566778888888999999998 998999999975
No 19
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.56 E-value=1.4e-13 Score=130.00 Aligned_cols=130 Identities=16% Similarity=0.169 Sum_probs=100.9
Q ss_pred eecCCCcEEEEEEecCCCCCcEEEEeCCCCC------hHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEE
Q 027643 67 FEKESSTYTYLLADVNHPDKPALLIDPVDKT------VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKS 140 (220)
Q Consensus 67 ~~~~~~~~~~li~~~~~~~~~~ilID~G~~~------~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v 140 (220)
+-..+++.+.+|.. .++.+|||+|... .+.+...|++.|.++|++++||.|.||++|+..+.+.+|..++
T Consensus 444 ~lDVGqGdaili~~----~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v~~i 519 (662)
T TIGR00361 444 MLDVGQGLAMFIGA----NGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPVKRL 519 (662)
T ss_pred EEecCCceEEEEEE----CCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCccEE
Confidence 33444555778877 4689999999531 2457899999999999999999999999999999999987788
Q ss_pred EeecCCC--CCCcEEcCCCCEEEeCCeEEEEEECCC-----CCCCCEEEEEccCCCCCCCcEEEEcCcccc
Q 027643 141 IISKASG--SKADLHVEHGDKVSFGDLFLEVRATPG-----HTLGCVTYVSGEGPDQPQPRMAFTGDALLI 204 (220)
Q Consensus 141 ~~~~~~~--~~~~~~~~~g~~l~lg~~~i~~~~~pG-----Ht~gs~~~~~~~~~~~~~~~~lftGD~~~~ 204 (220)
+.++... ......+..|+.+++++.++++++.+. ....|+++.++. ++.+++|+||+...
T Consensus 520 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~----~~~~~L~tGD~~~~ 586 (662)
T TIGR00361 520 VIPKGFVEEGVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDD----GGNSWLLTGDLEAE 586 (662)
T ss_pred EeccchhhCCCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEE----CCeeEEEecCCCHH
Confidence 8765421 122356788999999999999997531 235678888875 78899999999764
No 20
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.54 E-value=9.2e-14 Score=119.16 Aligned_cols=108 Identities=18% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC---CccEEEcCCCCccccCChHHHHhhC------CCCEE
Q 027643 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKS 140 (220)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~---~i~~I~iTH~H~DHigG~~~~~~~~------p~~~v 140 (220)
..+++|++|.. +++.+|||||.+ +...+.+.+. ++++||+||.|+||++|++.+.... ...+|
T Consensus 15 ~r~~~~~~v~~----~~~~iLiD~G~g----~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~I 86 (299)
T TIGR02651 15 ERNLPSIALKL----NGELWLFDCGEG----TQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTI 86 (299)
T ss_pred CCCCceEEEEE----CCeEEEEECCHH----HHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEE
Confidence 35667889987 577899999964 2334545444 4899999999999999999886531 24567
Q ss_pred EeecCCC-------------C---CCcEEcCCCC-EEEeCCeEEEEEECCCCCCCCEEEEEcc
Q 027643 141 IISKASG-------------S---KADLHVEHGD-KVSFGDLFLEVRATPGHTLGCVTYVSGE 186 (220)
Q Consensus 141 ~~~~~~~-------------~---~~~~~~~~g~-~l~lg~~~i~~~~~pGHt~gs~~~~~~~ 186 (220)
|+++... . .....+.+++ .+.+++++++++.+. |+..+++|.++.
T Consensus 87 y~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~~ 148 (299)
T TIGR02651 87 YGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HSIPSLGYRFEE 148 (299)
T ss_pred ECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcC-CCCceEEEEEEE
Confidence 7775421 0 0124566777 588899999999998 888899999975
No 21
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.52 E-value=3.2e-13 Score=115.24 Aligned_cols=132 Identities=19% Similarity=0.182 Sum_probs=103.0
Q ss_pred EeecCCCcEEEEEEecCCCCCcEEEEeCCC-CChHHHHHHHHHcCCC-ccEEEcCCCCccccCChHHHHhhCCCCEEEee
Q 027643 66 TFEKESSTYTYLLADVNHPDKPALLIDPVD-KTVDRDLNVIKELGLK-LVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (220)
Q Consensus 66 ~~~~~~~~~~~li~~~~~~~~~~ilID~G~-~~~~~~~~~l~~~~~~-i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~ 143 (220)
.+...++..+.++.. ++..+++|+|. ...+.++.+|++.|++ ||.+++||.|.||+||+..+.+.++--++++.
T Consensus 47 ~~lDvGqg~a~li~~----~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~ 122 (293)
T COG2333 47 HMLDVGQGLATLIRS----EGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIY 122 (293)
T ss_pred EEEEcCCCeEEEEee----CCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEe
Confidence 333344455666666 35589999997 2367788999999997 99999999999999999999997766667776
Q ss_pred cCCCC----------CCcEEcCCCCEEEeCCeEEEEEECCCCC-----CCCEEEEEccCCCCCCCcEEEEcCccccC
Q 027643 144 KASGS----------KADLHVEHGDKVSFGDLFLEVRATPGHT-----LGCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (220)
Q Consensus 144 ~~~~~----------~~~~~~~~g~~l~lg~~~i~~~~~pGHt-----~gs~~~~~~~~~~~~~~~~lftGD~~~~~ 205 (220)
..... ......+.|+.+.+++..++++...+.. ..|+.++++. .+.++|||||+.-.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~----g~~s~LlTGD~e~~~ 195 (293)
T COG2333 123 AGSDSTSTFVLRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTF----GGNSFLLTGDLEEKG 195 (293)
T ss_pred CCCCccchhhhhhcCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEe----CCeeEEEecCCCchh
Confidence 55432 3446678899999999999999776443 4589999886 789999999997544
No 22
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.51 E-value=1.2e-13 Score=113.86 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=87.9
Q ss_pred CcEEEEEEecCCCCCcEEEEeCCCC-ChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecCC----
Q 027643 72 STYTYLLADVNHPDKPALLIDPVDK-TVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS---- 146 (220)
Q Consensus 72 ~~~~~li~~~~~~~~~~ilID~G~~-~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~---- 146 (220)
+++||+|.. ++..+||||+.. .... .++....++++|++||.|.||+++...+..+ ++.++++++..
T Consensus 7 G~s~~li~~----~~~~iLiDP~~~~~~~~---~~~~~~~~id~vliTH~H~DH~~~~~~~~~~-~~~~v~~~~~~~~~~ 78 (228)
T PRK00685 7 GHSAFLIET----GGKKILIDPFITGNPLA---DLKPEDVKVDYILLTHGHGDHLGDTVEIAKR-TGATVIANAELANYL 78 (228)
T ss_pred cceEEEEEE----CCEEEEECCCCCCCCCC---CCChhcCcccEEEeCCCCccccccHHHHHHh-CCCEEEEeHHHHHHH
Confidence 357899987 688999998631 1110 1112233799999999999999998877654 37888877542
Q ss_pred ---CCCCcEEcCCCCEEEeCCeEEEEEECCCCCCC------------CEEEEEccCCCCCCCcEEEEcCccccC
Q 027643 147 ---GSKADLHVEHGDKVSFGDLFLEVRATPGHTLG------------CVTYVSGEGPDQPQPRMAFTGDALLIR 205 (220)
Q Consensus 147 ---~~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~g------------s~~~~~~~~~~~~~~~~lftGD~~~~~ 205 (220)
.......++.++.+++++++++++++. |... .++|.++. ++++++|+||+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~-H~~~~~~~~~~~~~~~~~g~~i~~----~~~~i~~~GDt~~~~ 147 (228)
T PRK00685 79 SEKGVEKTHPMNIGGTVEFDGGKVKLTPAL-HSSSFIDEDGITYLGNPTGFVITF----EGKTIYHAGDTGLFS 147 (228)
T ss_pred HhcCCCceeeccCCCcEEECCEEEEEEEEE-cCCCCcCCCCcccCCCceEEEEEE----CCeEEEEecCccchh
Confidence 122345678899999999999988765 5443 48999976 567999999997643
No 23
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.51 E-value=1.2e-13 Score=129.30 Aligned_cols=127 Identities=18% Similarity=0.156 Sum_probs=89.8
Q ss_pred CCcEEEEEEecCCCCCcEEEEeCCCCChH---HHHHHHHHcC---CCccEEEcCCCCccccCChHHHHhhCCCCEEEeec
Q 027643 71 SSTYTYLLADVNHPDKPALLIDPVDKTVD---RDLNVIKELG---LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (220)
Q Consensus 71 ~~~~~~li~~~~~~~~~~ilID~G~~~~~---~~~~~l~~~~---~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~ 144 (220)
-+.+||+|.. ++..+|||||..... .....+...+ .++++||+||.|.||+|+++.+.+.....+||++.
T Consensus 186 VG~Sc~Ll~~----~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~T~ 261 (630)
T TIGR03675 186 VGRSALLLST----PESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYGYDGPVYCTP 261 (630)
T ss_pred cCCCEEEEEE----CCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhCCCCceeecH
Confidence 3457999988 577899999954221 1112222222 24899999999999999999998753478999975
Q ss_pred CCC--------------------C-----------CCcEEcCCCCEEEeC-CeEEEEEECCCCCCCCEEEEEccCCCCCC
Q 027643 145 ASG--------------------S-----------KADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGEGPDQPQ 192 (220)
Q Consensus 145 ~~~--------------------~-----------~~~~~~~~g~~l~lg-~~~i~~~~~pGHt~gs~~~~~~~~~~~~~ 192 (220)
.+. . .....+..++.++++ +++++++.+ ||+.|++++.+... ++.
T Consensus 262 pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~A-GHilGsa~~~~~i~--dg~ 338 (630)
T TIGR03675 262 PTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNA-GHILGSAIAHLHIG--DGL 338 (630)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecC-ccccCceEEEEEEC--CCC
Confidence 420 0 112467778899994 799988865 79999998877542 134
Q ss_pred CcEEEEcCcccc
Q 027643 193 PRMAFTGDALLI 204 (220)
Q Consensus 193 ~~~lftGD~~~~ 204 (220)
.+++||||.-+.
T Consensus 339 ~~IvYTGD~~~~ 350 (630)
T TIGR03675 339 YNIVYTGDFKYE 350 (630)
T ss_pred EEEEEeCCCCCC
Confidence 689999998654
No 24
>PRK02113 putative hydrolase; Provisional
Probab=99.49 E-value=2.4e-13 Score=113.96 Aligned_cols=116 Identities=20% Similarity=0.170 Sum_probs=84.8
Q ss_pred CCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC-CccEEEcCCCCccccCChHHHHhh--CCCCEEEeecCCC
Q 027643 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSK--VPGVKSIISKASG 147 (220)
Q Consensus 71 ~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~-~i~~I~iTH~H~DHigG~~~~~~~--~p~~~v~~~~~~~ 147 (220)
....+++|.. +++.+|||||.+... .+.+.+. ++++||+||.|+||++|++.+... ....+||+++...
T Consensus 33 R~~~s~li~~----~~~~iLiD~G~g~~~----~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~ 104 (252)
T PRK02113 33 RLRTSALVET----EGARILIDCGPDFRE----QMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVA 104 (252)
T ss_pred ceeeEEEEEE----CCeEEEEECCchHHH----HHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHH
Confidence 4456888887 577899999975222 2322343 589999999999999999987532 2357788775310
Q ss_pred ---------------C-----CCcEEcCCCCEEEeCCeEEEEEECCCCC-CCCEEEEEccCCCCCCCcEEEEcCccc
Q 027643 148 ---------------S-----KADLHVEHGDKVSFGDLFLEVRATPGHT-LGCVTYVSGEGPDQPQPRMAFTGDALL 203 (220)
Q Consensus 148 ---------------~-----~~~~~~~~g~~l~lg~~~i~~~~~pGHt-~gs~~~~~~~~~~~~~~~~lftGD~~~ 203 (220)
. ...+.+++|+.+++++++++++.+. |+ ..+++|+++ +++|+||+.+
T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i~--------~i~y~~Dt~~ 172 (252)
T PRK02113 105 ERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRIG--------KMAYITDMLT 172 (252)
T ss_pred HHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEeC--------CEEEccCCCC
Confidence 0 1135677889999999999999998 86 457888882 6999999964
No 25
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.49 E-value=1.7e-13 Score=118.11 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=85.0
Q ss_pred CCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHc-------CC---CccEEEcCCCCccccCChHHHHhhCCCCEE
Q 027643 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL-------GL---KLVYAMNTHVHADHVTGTGLIKSKVPGVKS 140 (220)
Q Consensus 71 ~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~-------~~---~i~~I~iTH~H~DHigG~~~~~~~~p~~~v 140 (220)
....|++|... ++..+|||||.+... ++.+. |+ ++++||+||.|+||++|++.|.... ..+|
T Consensus 37 R~~ss~li~~~---g~~~iLiD~G~g~~~----ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~-~l~V 108 (302)
T PRK05184 37 RTQSSIAVSAD---GEDWVLLNASPDIRQ----QIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQ-PFPV 108 (302)
T ss_pred ccccEEEEEcC---CCEEEEEECChhHHH----HHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCC-CeEE
Confidence 34568888762 234699999965332 33332 22 4899999999999999999997654 6888
Q ss_pred EeecCCC-----C------------CCcEEcCCCCEEEeC---CeEEEEEECC------------CCCCCCEEEEEc-cC
Q 027643 141 IISKASG-----S------------KADLHVEHGDKVSFG---DLFLEVRATP------------GHTLGCVTYVSG-EG 187 (220)
Q Consensus 141 ~~~~~~~-----~------------~~~~~~~~g~~l~lg---~~~i~~~~~p------------GHt~gs~~~~~~-~~ 187 (220)
|+++... . ...+.+..++.++++ +++|+.+.++ -|+..+++|+++ +
T Consensus 109 yg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~- 187 (302)
T PRK05184 109 YATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDR- 187 (302)
T ss_pred EeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEec-
Confidence 8875321 0 112456778888886 8999999986 155679999995 2
Q ss_pred CCCCCCcEEEEcCc
Q 027643 188 PDQPQPRMAFTGDA 201 (220)
Q Consensus 188 ~~~~~~~~lftGD~ 201 (220)
.++++++|++|+
T Consensus 188 --~~g~~~~y~tD~ 199 (302)
T PRK05184 188 --ATGKRLFYAPGL 199 (302)
T ss_pred --CCCcEEEEECCC
Confidence 156789999776
No 26
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.48 E-value=4e-13 Score=123.25 Aligned_cols=127 Identities=18% Similarity=0.183 Sum_probs=102.2
Q ss_pred CCcEEEEEEecCCCCCcEEEEeCCCCCh-------HHH---HHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEE
Q 027643 71 SSTYTYLLADVNHPDKPALLIDPVDKTV-------DRD---LNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKS 140 (220)
Q Consensus 71 ~~~~~~li~~~~~~~~~~ilID~G~~~~-------~~~---~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v 140 (220)
-+.|+|++.- +++.+++|+|.... +.+ ..++.+...++++||+||.|.||+|+++++..+.+.+||
T Consensus 20 iGkN~~vve~----~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~pi 95 (555)
T COG0595 20 IGKNMYVVEY----GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPI 95 (555)
T ss_pred hccceEEEEE----CCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcCce
Confidence 4468889887 68899999994211 111 345677766899999999999999999999998866999
Q ss_pred EeecCC---------------CCCCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccC
Q 027643 141 IISKAS---------------GSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (220)
Q Consensus 141 ~~~~~~---------------~~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~ 205 (220)
|+++.+ .....+.++.++.+++++++++++++.+-.|++++|.++. +..+++||||.-|..
T Consensus 96 y~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~T----p~G~Iv~TGDFk~d~ 171 (555)
T COG0595 96 YASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKT----PEGNIVYTGDFKFDP 171 (555)
T ss_pred ecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEEC----CCccEEEeCCEEecC
Confidence 988653 1134578889999999999999999994458999999987 788899999997754
No 27
>PRK02126 ribonuclease Z; Provisional
Probab=99.48 E-value=4.6e-13 Score=116.84 Aligned_cols=113 Identities=13% Similarity=0.112 Sum_probs=79.1
Q ss_pred EeecCCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhC----CCCEEE
Q 027643 66 TFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV----PGVKSI 141 (220)
Q Consensus 66 ~~~~~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~----p~~~v~ 141 (220)
+..+...+|||+|.... +++.+|||||. .++ .++....++++||+||.|+||++|++.|...+ +.++||
T Consensus 9 ~~~g~~~dn~~~l~~~~--~~~~iLiD~G~--~~~---l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iy 81 (334)
T PRK02126 9 LVNGPFDDPGLYVDFLF--ERRALLFDLGD--LHH---LPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLF 81 (334)
T ss_pred EecCCCCCcEEEEEECC--CCeEEEEcCCC--HHH---HhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEE
Confidence 45566777888887642 47889999995 222 22223356999999999999999999997764 346787
Q ss_pred eecCCC---------C--------C---CcE--E--------------------------cCCCCEEEeCCeEEEEEECC
Q 027643 142 ISKASG---------S--------K---ADL--H--------------------------VEHGDKVSFGDLFLEVRATP 173 (220)
Q Consensus 142 ~~~~~~---------~--------~---~~~--~--------------------------~~~g~~l~lg~~~i~~~~~p 173 (220)
+++... . . ... . ..++..+..++++|+++.+.
T Consensus 82 gp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~ 161 (334)
T PRK02126 82 GPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLD 161 (334)
T ss_pred ECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEcc
Confidence 764310 0 0 000 1 12344567789999999998
Q ss_pred CCCCCCEEEEEcc
Q 027643 174 GHTLGCVTYVSGE 186 (220)
Q Consensus 174 GHt~gs~~~~~~~ 186 (220)
|+..+++|.+++
T Consensus 162 -H~vp~~gy~~~e 173 (334)
T PRK02126 162 -HGIPCLAFALEE 173 (334)
T ss_pred -CCCceeEEEEEe
Confidence 999999999985
No 28
>PRK04286 hypothetical protein; Provisional
Probab=99.48 E-value=4.7e-13 Score=115.17 Aligned_cols=126 Identities=18% Similarity=0.194 Sum_probs=80.8
Q ss_pred cCCCcEEEEEEecCCCCCcEEEEeCCCCC-------------hHHHHHHHHHc---CCCccEEEcCCCCccccCChHHH-
Q 027643 69 KESSTYTYLLADVNHPDKPALLIDPVDKT-------------VDRDLNVIKEL---GLKLVYAMNTHVHADHVTGTGLI- 131 (220)
Q Consensus 69 ~~~~~~~~li~~~~~~~~~~ilID~G~~~-------------~~~~~~~l~~~---~~~i~~I~iTH~H~DHigG~~~~- 131 (220)
.+..++|++|.. +++.||||+|... .+.+.+.++.. -.++++||+||.|+||+.|+..+
T Consensus 11 ~g~~~~~~~I~~----~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~ 86 (298)
T PRK04286 11 LGVRSMATFVET----KDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDP 86 (298)
T ss_pred CCceeeEEEEEE----CCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccc
Confidence 344568999998 6889999999431 03333333333 23689999999999999887664
Q ss_pred ---------HhhCCCCEEEeecC-C-----------C-------CCCcEEcCCCCEEEeCCeEEEEEECCCCCC--CCEE
Q 027643 132 ---------KSKVPGVKSIISKA-S-----------G-------SKADLHVEHGDKVSFGDLFLEVRATPGHTL--GCVT 181 (220)
Q Consensus 132 ---------~~~~p~~~v~~~~~-~-----------~-------~~~~~~~~~g~~l~lg~~~i~~~~~pGHt~--gs~~ 181 (220)
.+.|...+++.... . . ......+.+++.+.+|+++|++.....|.. ++++
T Consensus 87 y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~G 166 (298)
T PRK04286 87 YELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLG 166 (298)
T ss_pred cccccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccc
Confidence 12232333332100 0 0 002245678899999999999774324753 3554
Q ss_pred E----EEccCCCCCCCcEEEEcCcc
Q 027643 182 Y----VSGEGPDQPQPRMAFTGDAL 202 (220)
Q Consensus 182 ~----~~~~~~~~~~~~~lftGD~~ 202 (220)
| .++. ++++++|+||+.
T Consensus 167 y~i~~ri~~----gg~~~~~~gDt~ 187 (298)
T PRK04286 167 YVIMVRISD----GDESFVFASDVQ 187 (298)
T ss_pred eEEEEEEEe----CCEEEEEECCCC
Confidence 4 4443 678999999997
No 29
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.47 E-value=2e-13 Score=117.57 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=86.9
Q ss_pred cEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHc----CC---CccEEEcCCCCccccCChHHHHhhCCCCEEEeecC
Q 027643 73 TYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL----GL---KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (220)
Q Consensus 73 ~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~----~~---~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~ 145 (220)
..+++|.+. ++..+|||+|.+ .+.....+++. +. +|++||+||.|.||+.|+..|.+.+ ..+||+++.
T Consensus 38 rss~ll~~~---g~~~iLID~Gpd-~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~-~lpVya~~~ 112 (302)
T TIGR02108 38 QSSIAVSAD---GERWVLLNASPD-IRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQ-PFTLYATEM 112 (302)
T ss_pred ccEEEEEeC---CCEEEEEECCHH-HHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCC-CceEEECHH
Confidence 346778653 356899999964 44444444433 32 4899999999999999999998765 799999865
Q ss_pred CCC-------------C--CcEEcCCCCEEEeC-----CeEEEEEECCC-------C------CCCCEEEEEccCCCCC-
Q 027643 146 SGS-------------K--ADLHVEHGDKVSFG-----DLFLEVRATPG-------H------TLGCVTYVSGEGPDQP- 191 (220)
Q Consensus 146 ~~~-------------~--~~~~~~~g~~l~lg-----~~~i~~~~~pG-------H------t~gs~~~~~~~~~~~~- 191 (220)
... . ..+.++.++.+.++ +++|+.+.+++ | +.++++|++++ +
T Consensus 113 t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~----~~ 188 (302)
T TIGR02108 113 VLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIED----GT 188 (302)
T ss_pred HHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEe----CC
Confidence 310 0 01355677777764 48999999981 2 35789999986 5
Q ss_pred -CCcEEEEcCcc
Q 027643 192 -QPRMAFTGDAL 202 (220)
Q Consensus 192 -~~~~lftGD~~ 202 (220)
+++++|++|+-
T Consensus 189 ~g~~~~y~tD~g 200 (302)
T TIGR02108 189 TGKRLFYIPGCA 200 (302)
T ss_pred CCcEEEEECCCC
Confidence 78999999983
No 30
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.40 E-value=1.6e-13 Score=109.69 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=78.9
Q ss_pred EEEEeCCCCChH--HHHHHHHHcCC---CccEEEcCCCCccccCChHHHHhhC---CCCEEEeecCCCC-----------
Q 027643 88 ALLIDPVDKTVD--RDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV---PGVKSIISKASGS----------- 148 (220)
Q Consensus 88 ~ilID~G~~~~~--~~~~~l~~~~~---~i~~I~iTH~H~DHigG~~~~~~~~---p~~~v~~~~~~~~----------- 148 (220)
.+|||||.+ .. .+.+.+..... ++++||+||.|.||+.|++.+.... +. ++++++....
T Consensus 2 ~iLiD~g~~-~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~ 79 (194)
T PF12706_consen 2 RILIDCGPG-TRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILD 79 (194)
T ss_dssp EEEESE-TT-HHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHT
T ss_pred EEEEeCCCC-cccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhccccc
Confidence 689999975 33 12223332222 6899999999999999977765543 33 8888753210
Q ss_pred -------CCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEE----EEEccCCCCCCCcEEEEcCccc
Q 027643 149 -------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVT----YVSGEGPDQPQPRMAFTGDALL 203 (220)
Q Consensus 149 -------~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~----~~~~~~~~~~~~~~lftGD~~~ 203 (220)
.....+..++.++++++++++++++ |..+..+ |+++. ++++++|+||+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~~~~~g~~i~~----~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 80 LYPEEDNFDIIEISPGDEFEIGDFRITPFPAN-HGPPSYGGNKGFVIEP----DGKKIFYSGDTNY 140 (194)
T ss_dssp TCCTTSGEEEEEECTTEEEEETTEEEEEEEEE-SSSCCEEECCEEEEEE----TTEEEEEETSSSS
T ss_pred ccccccceeEEEeccCceEEeceEEEEEEecc-ccccccccCceEEEec----CCcceEEeeccch
Confidence 1124667788999999999999987 9999888 88885 7899999999987
No 31
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.35 E-value=2.9e-11 Score=95.04 Aligned_cols=129 Identities=23% Similarity=0.293 Sum_probs=83.8
Q ss_pred cEEEEEeecCC--CcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCC
Q 027643 61 LLFRQTFEKES--STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGV 138 (220)
Q Consensus 61 l~~~~~~~~~~--~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~ 138 (220)
+..+..+.... +-|++++.. .+.+|+|||-.- .....+.++..| .+.+|++||. ||+.....+++.| ++
T Consensus 9 l~~Ws~fn~~~n~dfng~~~~~----p~GnilIDP~~l-s~~~~~~l~a~g-gv~~IvLTn~--dHvR~A~~ya~~~-~a 79 (199)
T PF14597_consen 9 LFSWSWFNEARNLDFNGHAWRR----PEGNILIDPPPL-SAHDWKHLDALG-GVAWIVLTNR--DHVRAAEDYAEQT-GA 79 (199)
T ss_dssp EEEEEEEETTTTEEEEEEEE------TT--EEES------HHHHHHHHHTT---SEEE-SSG--GG-TTHHHHHHHS---
T ss_pred cchhhhcChhhccCceeEEEEc----CCCCEEecCccc-cHHHHHHHHhcC-CceEEEEeCC--hhHhHHHHHHHHh-CC
Confidence 44444444333 336777777 467899999953 566778888877 6999999986 9999999999999 99
Q ss_pred EEEeecCCC----CCCcEEcCCCCEEEeCCeEEEEEECCC-CCCCCEEEEEccCCCCCCCcEEEEcCccccCCcc
Q 027643 139 KSIISKASG----SKADLHVEHGDKVSFGDLFLEVRATPG-HTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCG 208 (220)
Q Consensus 139 ~v~~~~~~~----~~~~~~~~~g~~l~lg~~~i~~~~~pG-Ht~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~~ 208 (220)
+|+++.... ...++.+.+|+.+ ++| +++++.+| ||+|.+++++++ .++++||++..-..|
T Consensus 80 ~i~~p~~d~~~~p~~~D~~l~dge~i-~~g--~~vi~l~G~ktpGE~ALlled-------~vLi~GDl~~~~~~g 144 (199)
T PF14597_consen 80 KIYGPAADAAQFPLACDRWLADGEEI-VPG--LWVIHLPGSKTPGELALLLED-------RVLITGDLLRSHPAG 144 (199)
T ss_dssp EEEEEGGGCCC-SS--SEEE-TT-BS-STT--EEEEEE-SSSSTTEEEEEETT-------TEEEESSSEEBSSTT
T ss_pred eeeccHHHHhhCCCCCccccccCCCc-cCc--eEEEEcCCCCCCceeEEEecc-------ceEEecceeeecCCC
Confidence 999998754 3456788898843 355 67788888 999999999964 699999988764443
No 32
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.9e-12 Score=113.29 Aligned_cols=123 Identities=19% Similarity=0.197 Sum_probs=89.5
Q ss_pred CCCcEEEEEEecCCCCCcEEEEeCCCCChHHH--HHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecCCC
Q 027643 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRD--LNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG 147 (220)
Q Consensus 70 ~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~--~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~~ 147 (220)
..+..|.+|.. .+..+++|||....... ........ ++|++++||+|.||+|+++.+....-..+||++..+.
T Consensus 11 evg~s~~~l~~----~~~~il~D~G~~~~~~~~~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~ 85 (427)
T COG1236 11 EVGRSCVLLET----GGTRILLDCGLFPGDPSPERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTA 85 (427)
T ss_pred CcCcEEEEEEE----CCceEEEECCCCcCcCCccCCCCCCCC-CcCEEEeccCchhhhcccHHHHHhccCCceeeccCHH
Confidence 34456888887 56899999995321111 11110011 4799999999999999999987643257888876531
Q ss_pred -------------C-----------------CCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEE
Q 027643 148 -------------S-----------------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAF 197 (220)
Q Consensus 148 -------------~-----------------~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lf 197 (220)
. ...+.+.-|+.+.++++++++++. ||.+|+..+.++. ++.+++|
T Consensus 86 ~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~A-GHilGsa~~~le~----~~~~ily 160 (427)
T COG1236 86 ALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNA-GHILGSAAILLEV----DGGRILY 160 (427)
T ss_pred HHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecC-CCccceeEEEEEe----CCceEEE
Confidence 0 112458889999999999988876 7999999999986 5667999
Q ss_pred EcCcc
Q 027643 198 TGDAL 202 (220)
Q Consensus 198 tGD~~ 202 (220)
|||.=
T Consensus 161 tGD~~ 165 (427)
T COG1236 161 TGDVK 165 (427)
T ss_pred EeccC
Confidence 99984
No 33
>PRK00055 ribonuclease Z; Reviewed
Probab=99.31 E-value=9.9e-12 Score=104.62 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=48.4
Q ss_pred CcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC---CccEEEcCCCCccccCChHHHHhhC------CCCEEEe
Q 027643 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKSII 142 (220)
Q Consensus 72 ~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~---~i~~I~iTH~H~DHigG~~~~~~~~------p~~~v~~ 142 (220)
.++|++|.. +++.+|||||.+ ....+.+.+. ++++||+||.|+||++|++.+...+ ...+||+
T Consensus 19 ~~~~~li~~----~~~~iLiD~G~g----~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~ 90 (270)
T PRK00055 19 NVSSILLRL----GGELFLFDCGEG----TQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYG 90 (270)
T ss_pred CCCEEEEEE----CCcEEEEECCHH----HHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEEC
Confidence 477999987 577899999964 2234444444 4899999999999999999876432 2456777
Q ss_pred ecC
Q 027643 143 SKA 145 (220)
Q Consensus 143 ~~~ 145 (220)
++.
T Consensus 91 p~~ 93 (270)
T PRK00055 91 PKG 93 (270)
T ss_pred Ccc
Confidence 654
No 34
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.23 E-value=2.5e-11 Score=108.12 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=91.7
Q ss_pred CcEEEEEEecCCCCCcEEEEeCCCCCh---HHHHHHHHHcC---CCccEEEcCCCCccccCChHHHHhhCCCCEEEeecC
Q 027643 72 STYTYLLADVNHPDKPALLIDPVDKTV---DRDLNVIKELG---LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (220)
Q Consensus 72 ~~~~~li~~~~~~~~~~ilID~G~~~~---~~~~~~l~~~~---~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~ 145 (220)
+-.|+++.+ ....+|+|||.... ....-.+.--. ..+|+|++||+|.||+|=+|+|.+.--..|||+.+.
T Consensus 193 GRSa~lv~T----~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~P 268 (637)
T COG1782 193 GRSALLVST----PESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTPP 268 (637)
T ss_pred cceeEEEec----CCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCCCCCeeeCCC
Confidence 346888888 46789999994211 12112221111 148999999999999999998877633779999876
Q ss_pred CC-------------------------------CCCcEEcCCCCEEEeC-CeEEEEEECCCCCCCCEEEEEccCCCCCCC
Q 027643 146 SG-------------------------------SKADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGEGPDQPQP 193 (220)
Q Consensus 146 ~~-------------------------------~~~~~~~~~g~~l~lg-~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~ 193 (220)
+. .+...+++-|++-++. +++++++++ ||-.||....+..+ ++.-
T Consensus 269 TRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NA-GHILGSA~~HlHIG--dGly 345 (637)
T COG1782 269 TRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNA-GHILGSAMAHLHIG--DGLY 345 (637)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecc-cchhcceeeEEEec--CCce
Confidence 41 1122577888888897 899998876 79999999888653 5778
Q ss_pred cEEEEcCcccc
Q 027643 194 RMAFTGDALLI 204 (220)
Q Consensus 194 ~~lftGD~~~~ 204 (220)
+++||||.-|.
T Consensus 346 Ni~yTGDfk~~ 356 (637)
T COG1782 346 NIVYTGDFKFE 356 (637)
T ss_pred eEEEecccccc
Confidence 89999999653
No 35
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.20 E-value=5.4e-11 Score=98.55 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=60.3
Q ss_pred CCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCC---ccEEEcCCCCccccCChHHHHhhC-CCCEEEeecCC
Q 027643 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLK---LVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKAS 146 (220)
Q Consensus 71 ~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~---i~~I~iTH~H~DHigG~~~~~~~~-p~~~v~~~~~~ 146 (220)
..+.+++|.. .+..+|+|+|.. ...+.+.++..|++ +++|++||.||||+||++.+.+.. |+.+|++++..
T Consensus 20 ~hGfS~LVE~----~~~riLFDtG~~-~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~a 94 (259)
T COG1237 20 EHGFSALVED----EGTRILFDTGTD-SDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDA 94 (259)
T ss_pred cCceEEEEEc----CCeEEEEeCCCC-cHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHH
Confidence 4556889988 678999999954 78889999999875 799999999999999999887754 88999998653
No 36
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.01 E-value=5.1e-09 Score=89.91 Aligned_cols=66 Identities=23% Similarity=0.227 Sum_probs=45.8
Q ss_pred CCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC---CccEEEcCCCCccccCChHHHHhhC------CCCEEE
Q 027643 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKSI 141 (220)
Q Consensus 71 ~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~---~i~~I~iTH~H~DHigG~~~~~~~~------p~~~v~ 141 (220)
.+..+++|.. .++.+|||||.+. ..++...+. ++++||+||.|.||+.|++.+.... ....||
T Consensus 18 r~~~s~ll~~----~~~~~L~DcGeGt----~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iy 89 (292)
T COG1234 18 RNVSSILLRL----EGEKFLFDCGEGT----QHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIY 89 (292)
T ss_pred cccceeEEEe----CCeeEEEECCHhH----HHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEE
Confidence 3456778876 4778999999763 233444433 5899999999999999999765432 224666
Q ss_pred eec
Q 027643 142 ISK 144 (220)
Q Consensus 142 ~~~ 144 (220)
.++
T Consensus 90 gP~ 92 (292)
T COG1234 90 GPP 92 (292)
T ss_pred CCc
Confidence 663
No 37
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.99 E-value=2e-09 Score=94.71 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=64.1
Q ss_pred CccEEEcCCCCccccC--ChHHHHhhC-CCCEEEeecCC-------CCC--CcEEcCCCCEEEeCCeEEEEEECC-----
Q 027643 111 KLVYAMNTHVHADHVT--GTGLIKSKV-PGVKSIISKAS-------GSK--ADLHVEHGDKVSFGDLFLEVRATP----- 173 (220)
Q Consensus 111 ~i~~I~iTH~H~DHig--G~~~~~~~~-p~~~v~~~~~~-------~~~--~~~~~~~g~~l~lg~~~i~~~~~p----- 173 (220)
++|+||+||.|.||+. .+..+.+.. +.++++.+... ..+ ....++.|+++++++++|+++...
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~~~~ 188 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSFDRTAL 188 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEeccccccc
Confidence 5899999999999994 344454443 35667776431 122 235788999999999999998662
Q ss_pred -----CCCC-----------CCEEEEEccCCCCCCCcEEEEcCcccc
Q 027643 174 -----GHTL-----------GCVTYVSGEGPDQPQPRMAFTGDALLI 204 (220)
Q Consensus 174 -----GHt~-----------gs~~~~~~~~~~~~~~~~lftGD~~~~ 204 (220)
.|.. ..++|+++. ++++++|+||+.+.
T Consensus 189 i~~p~~h~~~~~~~~~d~~~~~~gyvie~----~~~tvy~sGDT~~~ 231 (355)
T PRK11709 189 VTLPADGKAAGGVLPDDMDRRAVNYLFKT----PGGNIYHSGDSHYS 231 (355)
T ss_pred cccccccccccccccccCCcceEEEEEEe----CCeEEEEeCCCCcc
Confidence 1221 247889875 67899999999764
No 38
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.91 E-value=1.8e-09 Score=84.65 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=66.3
Q ss_pred CcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecCCCCCCc
Q 027643 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSKAD 151 (220)
Q Consensus 72 ~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~~~~~~ 151 (220)
+.+|++|.. ++..||+||.... ........++|+|++||.|.||+.-- .+... ....
T Consensus 6 gha~~~ie~----~g~~iliDP~~~~-----~~~~~~~~~~D~IlisH~H~DH~~~~-~l~~~-------------~~~~ 62 (163)
T PF13483_consen 6 GHASFLIET----GGKRILIDPWFSS-----VGYAPPPPKADAILISHSHPDHFDPE-TLKRL-------------DRDI 62 (163)
T ss_dssp ETTEEEEEE----TTEEEEES--TTT-------T-TSS-B-SEEEESSSSTTT-CCC-CCCCH-------------HTSS
T ss_pred EeeEEEEEE----CCEEEEECCCCCc-----cCcccccCCCCEEEECCCccccCChh-Hhhhc-------------cccc
Confidence 456899988 6889999999520 11111224689999999999998662 11111 1223
Q ss_pred EEcCCCCEEEeCCeEEEEEECC-----CCCC-CCEEEEEccCCCCCCCcEEEEcCcccc
Q 027643 152 LHVEHGDKVSFGDLFLEVRATP-----GHTL-GCVTYVSGEGPDQPQPRMAFTGDALLI 204 (220)
Q Consensus 152 ~~~~~g~~l~lg~~~i~~~~~p-----GHt~-gs~~~~~~~~~~~~~~~~lftGD~~~~ 204 (220)
..+..++.+++++++++.+... ++.. ..++|.++. ++.++++.||+...
T Consensus 63 ~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~----~g~~i~~~Gd~~~~ 117 (163)
T PF13483_consen 63 HVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEV----GGVTIYHAGDTGFP 117 (163)
T ss_dssp EEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEE----TTEEEEE-TT--S-
T ss_pred EEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEe----CCCEEEEECCCccC
Confidence 4566688899999999988764 3333 478999986 78899999999763
No 39
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.89 E-value=4.7e-09 Score=89.72 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=86.2
Q ss_pred CCcEEEEEEecCCCCCcEEEEeCCCC----ChHHH--HHHHHHcCC---CccEEEcCCCCccccCChHHHHhh--CCCCE
Q 027643 71 SSTYTYLLADVNHPDKPALLIDPVDK----TVDRD--LNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSK--VPGVK 139 (220)
Q Consensus 71 ~~~~~~li~~~~~~~~~~ilID~G~~----~~~~~--~~~l~~~~~---~i~~I~iTH~H~DHigG~~~~~~~--~p~~~ 139 (220)
-+-.|.+|.- +++.|++|||.. +-+++ +.++.+.|. -|+-|++||+|.||+|.+|+|.+. | +.|
T Consensus 15 vGrSCilvsi----~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY-~GP 89 (501)
T KOG1136|consen 15 VGRSCILVSI----GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGY-DGP 89 (501)
T ss_pred cCceEEEEEE----CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCC-CCc
Confidence 3446777776 688999999942 11111 123333332 288999999999999999999875 5 778
Q ss_pred EEeecCCC-------------------CC-------------CcEEcCCCCEEEeC-CeEEEEEECCCCCCCCEEEEEcc
Q 027643 140 SIISKASG-------------------SK-------------ADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGE 186 (220)
Q Consensus 140 v~~~~~~~-------------------~~-------------~~~~~~~g~~l~lg-~~~i~~~~~pGHt~gs~~~~~~~ 186 (220)
||++-.+. .. ....+.-.++++++ ++.++++.. ||-.|...|++.-
T Consensus 90 IYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYA-GHVLGAaMf~ikv 168 (501)
T KOG1136|consen 90 IYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYA-GHVLGAAMFYIKV 168 (501)
T ss_pred eEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeec-ccccceeEEEEEe
Confidence 98874321 00 01234445677775 788888866 7999999999976
Q ss_pred CCCCCCCcEEEEcCccc
Q 027643 187 GPDQPQPRMAFTGDALL 203 (220)
Q Consensus 187 ~~~~~~~~~lftGD~~~ 203 (220)
+..+++||||--.
T Consensus 169 ----Gd~svvYTGDYnm 181 (501)
T KOG1136|consen 169 ----GDQSVVYTGDYNM 181 (501)
T ss_pred ----cceeEEEecCccC
Confidence 6779999999744
No 40
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.72 E-value=4e-08 Score=83.37 Aligned_cols=110 Identities=19% Similarity=0.123 Sum_probs=63.6
Q ss_pred cEEEEeCCCCChHHHHHHHHHcC-CCccEEEcCCCCccccCChHHHHhhCCCCEEEeecCCCCC-------------CcE
Q 027643 87 PALLIDPVDKTVDRDLNVIKELG-LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSK-------------ADL 152 (220)
Q Consensus 87 ~~ilID~G~~~~~~~~~~l~~~~-~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~~~~-------------~~~ 152 (220)
+.++||+|.. +..+..+.. .++++||+||.|+|||.|++.|.+.+ ..+++........ ...
T Consensus 41 ~~~lid~g~~----~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (269)
T COG1235 41 KTLLIDAGPD----LRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAY-TLPIYVNPGTLRASTSDRLLGGFPYLFRH 115 (269)
T ss_pred eeEEEecChh----HHhhhhcccccccCeEEEecccHHhhcChHHHHHHh-cCCcccccceecccchhhhhccchhhhcC
Confidence 3678888843 222222222 35999999999999999999999977 5555554322100 011
Q ss_pred EcCCCCEEEeCCeEEEEEECCC-----------------CCCCCEEEEEccCCCCCCCcEEEEcCccccC
Q 027643 153 HVEHGDKVSFGDLFLEVRATPG-----------------HTLGCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (220)
Q Consensus 153 ~~~~g~~l~lg~~~i~~~~~pG-----------------Ht~gs~~~~~~~~~~~~~~~~lftGD~~~~~ 205 (220)
....++...+++..+.....++ |.....+|.++. -...+.+++|+++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~hd~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~vay~~Dt~~~~ 181 (269)
T COG1235 116 PFPPFSLPAIGGLEVTPFPVPHDAIEPVGFVIIRTGRKLHGGTDIGYGLEW----RIGDVAYLTDTELFP 181 (269)
T ss_pred CCCccccccccceeeecCCCCCccccCCCcccccCcccccccccceeeeee----eeccEEEccccccCc
Confidence 2233445555655555433331 333455555443 235677999997543
No 41
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.59 E-value=3e-08 Score=89.38 Aligned_cols=135 Identities=17% Similarity=0.196 Sum_probs=88.3
Q ss_pred CCcEEEEEe-ecCCCcEEEEEEecCCCCCcEEEEeCCCCChH---HHHHHHHHcCC-CccEEEcCCCCccccCChHHHHh
Q 027643 59 SKLLFRQTF-EKESSTYTYLLADVNHPDKPALLIDPVDKTVD---RDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKS 133 (220)
Q Consensus 59 ~~l~~~~~~-~~~~~~~~~li~~~~~~~~~~ilID~G~~~~~---~~~~~l~~~~~-~i~~I~iTH~H~DHigG~~~~~~ 133 (220)
+++.|..+. ...-+-.|.++.. .|+.|+.|||...+- .-.....+... ++|.+++||+|.||++.++++.+
T Consensus 12 d~l~~~pLGag~EVGRSC~ile~----kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~q 87 (668)
T KOG1137|consen 12 DQLKFTPLGAGNEVGRSCHILEY----KGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQ 87 (668)
T ss_pred CcEEEEECCCCcccCceEEEEEe----cCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceee
Confidence 445444332 2223346888888 688999999942100 00111222222 48999999999999999999977
Q ss_pred hC-CCCEEEeecCCCC-------------------------------CCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEE
Q 027643 134 KV-PGVKSIISKASGS-------------------------------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVT 181 (220)
Q Consensus 134 ~~-p~~~v~~~~~~~~-------------------------------~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~ 181 (220)
+. -..++++...+.. .....++--+..++.|+++.+++ .||-.|.+.
T Consensus 88 kTsf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacM 166 (668)
T KOG1137|consen 88 KTSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACM 166 (668)
T ss_pred eccccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec-cchhhhhee
Confidence 53 1456665533210 00023333456777899999998 689999999
Q ss_pred EEEccCCCCCCCcEEEEcCcc
Q 027643 182 YVSGEGPDQPQPRMAFTGDAL 202 (220)
Q Consensus 182 ~~~~~~~~~~~~~~lftGD~~ 202 (220)
|.++- .+-++|||||..
T Consensus 167 f~vei----agv~lLyTGd~s 183 (668)
T KOG1137|consen 167 FMVEI----AGVRLLYTGDYS 183 (668)
T ss_pred eeeee----ceEEEEeccccc
Confidence 99986 788999999973
No 42
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.58 E-value=4.4e-07 Score=76.87 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=68.6
Q ss_pred CcEEEEe-CCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHh-h------CCCCEEEeecCCC----------
Q 027643 86 KPALLID-PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS-K------VPGVKSIISKASG---------- 147 (220)
Q Consensus 86 ~~~ilID-~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~-~------~p~~~v~~~~~~~---------- 147 (220)
...+|+| +|.+....+.+.+. .+++||+||.|.||++|++.+.- + -+...|+.++...
T Consensus 18 ~~~ilfD~ag~g~~~~l~~k~~----~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~~ 93 (277)
T TIGR02650 18 PEEIIFDAAEEGSSTLGGKKVA----AFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEFI 93 (277)
T ss_pred chhheehhhcccchhHHhhhHh----hcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHHH
Confidence 3479999 88764444433333 58899999999999999965433 2 1235678776521
Q ss_pred --------CCCc-EEcCCCCEEEeC-C---eEEEEEECCCCCC---CCEEEEEcc-------------------------
Q 027643 148 --------SKAD-LHVEHGDKVSFG-D---LFLEVRATPGHTL---GCVTYVSGE------------------------- 186 (220)
Q Consensus 148 --------~~~~-~~~~~g~~l~lg-~---~~i~~~~~pGHt~---gs~~~~~~~------------------------- 186 (220)
.... ..+..++.+.+. + ..++.+.+. |+. -|.+|.+-.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~-H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg 172 (277)
T TIGR02650 94 KAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRK-HHASEESFFGHHFEERRKKKEEEFGGDDKKEARLLKEEGG 172 (277)
T ss_pred HHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccc-cccCccCccCeEEEEEeecchHhHcCCCHHHHHHHHHhCC
Confidence 1111 234445555444 2 566666665 763 366665521
Q ss_pred ---CCCCCCCcEEEEcCcccc
Q 027643 187 ---GPDQPQPRMAFTGDALLI 204 (220)
Q Consensus 187 ---~~~~~~~~~lftGD~~~~ 204 (220)
......++++|+||+...
T Consensus 173 ~~~t~e~~~~~vvysGDT~~~ 193 (277)
T TIGR02650 173 DDFTREEHHKILLIIGDDLAA 193 (277)
T ss_pred ccccccccCcEEEEeCCCCCC
Confidence 111235789999999765
No 43
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.57 E-value=7e-07 Score=82.44 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=90.7
Q ss_pred EeecCCCcEEEEEEecCCCCCcEEEEeCCCCC--hHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhC-CCCEEEe
Q 027643 66 TFEKESSTYTYLLADVNHPDKPALLIDPVDKT--VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV-PGVKSII 142 (220)
Q Consensus 66 ~~~~~~~~~~~li~~~~~~~~~~ilID~G~~~--~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~-p~~~v~~ 142 (220)
+.....+..||+|.- ++-.+|||||+.. -...++.++..-..||+|++||...-|+||+++...++ -+++||+
T Consensus 8 ~g~~de~~~cyllqi----D~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYA 83 (764)
T KOG1135|consen 8 CGATDEGPLCYLLQI----DGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYA 83 (764)
T ss_pred ccccCCCcceEEEEE----cCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEE
Confidence 455667788999987 5788999999642 12233444444456999999999999999999886653 3578888
Q ss_pred ecCC-------------------------------CCCCcEEcCCCCEEEeCC----eEEEEEECCCCCCCCEEEEEccC
Q 027643 143 SKAS-------------------------------GSKADLHVEHGDKVSFGD----LFLEVRATPGHTLGCVTYVSGEG 187 (220)
Q Consensus 143 ~~~~-------------------------------~~~~~~~~~~g~~l~lg~----~~i~~~~~pGHt~gs~~~~~~~~ 187 (220)
+-.. .......++-.+.+.+.| ++|.+++. ||+.|...+.+..
T Consensus 84 T~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynA-GhmiGGsIWkI~k- 161 (764)
T KOG1135|consen 84 TLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNA-GHMIGGSIWKISK- 161 (764)
T ss_pred ecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecC-CCccCceEEEEEe-
Confidence 7431 011114566667777743 47877765 8999999888875
Q ss_pred CCCCCCcEEEEcCc
Q 027643 188 PDQPQPRMAFTGDA 201 (220)
Q Consensus 188 ~~~~~~~~lftGD~ 201 (220)
.+..++|+-|.
T Consensus 162 ---~~E~ivYavd~ 172 (764)
T KOG1135|consen 162 ---VGEDIVYAVDF 172 (764)
T ss_pred ---cCceEEEEEec
Confidence 45889999886
No 44
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.52 E-value=7.5e-07 Score=75.00 Aligned_cols=124 Identities=24% Similarity=0.333 Sum_probs=78.3
Q ss_pred CcEEEEEEecCCCCCcEEEEeCCCCChHHHHH----HHHHcCCCccEEEcCCCCccccCChHHHHhhCC-CCEEEeecCC
Q 027643 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLN----VIKELGLKLVYAMNTHVHADHVTGTGLIKSKVP-GVKSIISKAS 146 (220)
Q Consensus 72 ~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~----~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p-~~~v~~~~~~ 146 (220)
+.+|++|.. ++..+||||.......... .....-.++++|++||.|.||+........... ...++.+...
T Consensus 13 Gha~~lie~----~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~~ 88 (258)
T COG2220 13 GHAAFLIET----GGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLGA 88 (258)
T ss_pred cceEEEEEE----CCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEEeHHHH
Confidence 566889988 6788999999531110000 001112358999999999999988776655432 3334444331
Q ss_pred -------CCC--CcEEcCCCCEEEeCCeEEEEEE---CCC-CC--------CCCEEEEEccCCCCCCCcEEEEcCccc
Q 027643 147 -------GSK--ADLHVEHGDKVSFGDLFLEVRA---TPG-HT--------LGCVTYVSGEGPDQPQPRMAFTGDALL 203 (220)
Q Consensus 147 -------~~~--~~~~~~~g~~l~lg~~~i~~~~---~pG-Ht--------~gs~~~~~~~~~~~~~~~~lftGD~~~ 203 (220)
... ....+..++.+++++.++.+.. .+. +. ....+|.++. ++.+++++||+-+
T Consensus 89 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~----~g~~iyh~GDt~~ 162 (258)
T COG2220 89 GDLLIRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIET----PGGRVYHAGDTGY 162 (258)
T ss_pred HHHHHhcCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEe----CCceEEeccCccH
Confidence 122 1345567889999988765443 221 22 3477888876 6789999999954
No 45
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.28 E-value=9.2e-07 Score=82.42 Aligned_cols=122 Identities=14% Similarity=0.102 Sum_probs=73.6
Q ss_pred EEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcC-----CCccEEEcCCCCccccCChHHHHhhC-------CCCEEE
Q 027643 74 YTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELG-----LKLVYAMNTHVHADHVTGTGLIKSKV-------PGVKSI 141 (220)
Q Consensus 74 ~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~-----~~i~~I~iTH~H~DHigG~~~~~~~~-------p~~~v~ 141 (220)
.+++|.-+ .+..||.|||.++..++.+.--..+ .++.+|++||.|+||..|+..++++. +.-+++
T Consensus 462 SS~lv~i~---~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~ 538 (746)
T KOG2121|consen 462 SSILVRID---SDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLL 538 (746)
T ss_pred EEEEEecc---CCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHHHHHhccccccCceE
Confidence 46777664 3556999999877666554433111 24789999999999999998776542 112232
Q ss_pred eecCC-------------CCC---------CcEEcC--------C---CCEE-EeCCeEEEEEECCCCCCCCEEEEEccC
Q 027643 142 ISKAS-------------GSK---------ADLHVE--------H---GDKV-SFGDLFLEVRATPGHTLGCVTYVSGEG 187 (220)
Q Consensus 142 ~~~~~-------------~~~---------~~~~~~--------~---g~~l-~lg~~~i~~~~~pGHt~gs~~~~~~~~ 187 (220)
+.... ... +...+. + ...+ +++...+....+- |++.+++..+..+
T Consensus 539 vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l~~~~l~~i~tc~vi-HCp~syg~~i~~~ 617 (746)
T KOG2121|consen 539 VVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLLRELGLESIQTCPVI-HCPQSYGCSITHG 617 (746)
T ss_pred EeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHHHhcCceeEEecCcE-ecChhhceeEecc
Confidence 22110 000 000000 0 1111 2344556666565 9999999999863
Q ss_pred CCCCCCcEEEEcCcc
Q 027643 188 PDQPQPRMAFTGDAL 202 (220)
Q Consensus 188 ~~~~~~~~lftGD~~ 202 (220)
.+.+++|+||+-
T Consensus 618 ---~~~Ki~YSGDTr 629 (746)
T KOG2121|consen 618 ---SGWKIVYSGDTR 629 (746)
T ss_pred ---cceEEEEcCCCC
Confidence 356899999994
No 46
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.27 E-value=6.2e-06 Score=68.36 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=75.8
Q ss_pred EEEEEEecCCCCCcEEEEeCCCC----------C------hHHHHHHHHHcCCCccEEEcCCCCccccCC---------h
Q 027643 74 YTYLLADVNHPDKPALLIDPVDK----------T------VDRDLNVIKELGLKLVYAMNTHVHADHVTG---------T 128 (220)
Q Consensus 74 ~~~li~~~~~~~~~~ilID~G~~----------~------~~~~~~~l~~~~~~i~~I~iTH~H~DHigG---------~ 128 (220)
-|.+|.. .+-.||||||-. . .++..+.+++.-.+-+.|.+||.|+||-.- .
T Consensus 16 mAt~vet----~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~ 91 (304)
T COG2248 16 MATFVET----KDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASG 91 (304)
T ss_pred hhheeec----CCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcc
Confidence 3557776 577899999931 1 222233334444457899999999999865 1
Q ss_pred HHHHhhCCCCEEEeecCC-------------------CCCCcEEcCCCCEEEeCCeEEEEEE-CCCCCCC--CEEEEEcc
Q 027643 129 GLIKSKVPGVKSIISKAS-------------------GSKADLHVEHGDKVSFGDLFLEVRA-TPGHTLG--CVTYVSGE 186 (220)
Q Consensus 129 ~~~~~~~p~~~v~~~~~~-------------------~~~~~~~~~~g~~l~lg~~~i~~~~-~pGHt~g--s~~~~~~~ 186 (220)
..-.+.|.+-.+.+-..+ .......+.+|.+|++|+..|++=. +| |-++ -++|.+.-
T Consensus 92 e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvp-HG~eGskLGyVl~v 170 (304)
T COG2248 92 ETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVP-HGREGSKLGYVLMV 170 (304)
T ss_pred cchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCC-CCCcccccceEEEE
Confidence 122333433333332111 1123456789999999999999854 45 6554 33333322
Q ss_pred CCCCCCCcEEEEcCcc
Q 027643 187 GPDQPQPRMAFTGDAL 202 (220)
Q Consensus 187 ~~~~~~~~~lftGD~~ 202 (220)
...+++.+++|+.|+.
T Consensus 171 ~V~dg~~~i~faSDvq 186 (304)
T COG2248 171 AVTDGKSSIVFASDVQ 186 (304)
T ss_pred EEecCCeEEEEccccc
Confidence 1224788999999995
No 47
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=3.1e-06 Score=71.37 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=83.3
Q ss_pred EEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC---CccEEEcCCCCccccCChHHHHhhCCCCEEEeecCC---CC
Q 027643 75 TYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS---GS 148 (220)
Q Consensus 75 ~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~---~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~---~~ 148 (220)
..++.+ ++..+++|+|.+ .|.+.++ +|+.+++||.|.+|++++.+|. ..+++.+... ..
T Consensus 97 ~tl~~d----~~~v~v~~~gls-------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~----~sp~l~~s~e~~gr~ 161 (302)
T KOG4736|consen 97 ITLVVD----GGDVVVVDTGLS-------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFP----QSPILYHSMEYIGRH 161 (302)
T ss_pred cceeec----CCceEEEecCCc-------hhhhcCcChhhcceeEEeccCccccccccccc----CCHHHhhhhhhcCCc
Confidence 346666 578899999953 4566665 3889999999999999999885 4444433332 22
Q ss_pred CCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccC
Q 027643 149 KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (220)
Q Consensus 149 ~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~ 205 (220)
.....++++..++++. .+++-.+|||++.+++..+.+. +...++.++||++-..
T Consensus 162 ~~pt~l~e~~~~~l~~-~~~V~~TpGht~~~isvlv~n~--~~~GTv~itGDLf~~~ 215 (302)
T KOG4736|consen 162 VTPTELDERPYLKLSP-NVEVWKTPGHTQHDISVLVHNV--DLYGTVAITGDLFPRE 215 (302)
T ss_pred cChhhhccCCccccCC-ceeEeeCCCCCCcceEEEEEee--cccceEEEEeecccCC
Confidence 3345677777788873 4666679999999999999875 4677899999997554
No 48
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=97.84 E-value=3.7e-05 Score=69.49 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=67.4
Q ss_pred CccEEEcCCCCccccCChHHHHhhCCCCEEEeecCCCC----------CCcEEcCCCCEEEeCCeEEEEEECCCCCCCCE
Q 027643 111 KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS----------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCV 180 (220)
Q Consensus 111 ~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~~~----------~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~ 180 (220)
...+-|+||+|.||..|+-.- +...++|++..+.. ...+.+.-++.+.+.++.+.++..+ |+||++
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~s---W~~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldAn-HCPGa~ 187 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKS---WSHPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDAN-HCPGAV 187 (481)
T ss_pred ccceeeeeccccccccccccc---ccCCcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEeccc-cCCCce
Confidence 467999999999998887533 22334888765432 2235677888999999999999998 999999
Q ss_pred EEEEccCCCCCCCcEEEEcCccccC
Q 027643 181 TYVSGEGPDQPQPRMAFTGDALLIR 205 (220)
Q Consensus 181 ~~~~~~~~~~~~~~~lftGD~~~~~ 205 (220)
.+.++.. .+..+|++||.=+..
T Consensus 188 mf~F~~~---~~~~~lhtGDFR~s~ 209 (481)
T KOG1361|consen 188 MFLFELS---FGPCILHTGDFRASA 209 (481)
T ss_pred EEEeecC---CCceEEecCCcccCh
Confidence 9999862 456899999985543
No 49
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.82 E-value=6.9e-05 Score=67.35 Aligned_cols=107 Identities=22% Similarity=0.329 Sum_probs=70.2
Q ss_pred EEEEEEecCCCCCcEEEEeCCCC--ChHHHHHHHH-HcCCC-ccEEEcCCCCccccCChHHHHhhC----CCCEEEeecC
Q 027643 74 YTYLLADVNHPDKPALLIDPVDK--TVDRDLNVIK-ELGLK-LVYAMNTHVHADHVTGTGLIKSKV----PGVKSIISKA 145 (220)
Q Consensus 74 ~~~li~~~~~~~~~~ilID~G~~--~~~~~~~~l~-~~~~~-i~~I~iTH~H~DHigG~~~~~~~~----p~~~v~~~~~ 145 (220)
|..+|.. +...|+|||-.. ..+.-++... +++.+ +.+|+.||.|.||.||..-+...- -.++|+++..
T Consensus 127 NITfveG----dtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~G 202 (655)
T COG2015 127 NITFVEG----DTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAG 202 (655)
T ss_pred ceEEEcC----CcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchh
Confidence 4556665 566899999853 1233333332 34544 899999999999999987665421 2456666542
Q ss_pred C--------------------------------------------------CCCCcEEcCCCCEEEeCCeEEEEEECCC-
Q 027643 146 S--------------------------------------------------GSKADLHVEHGDKVSFGDLFLEVRATPG- 174 (220)
Q Consensus 146 ~--------------------------------------------------~~~~~~~~~~g~~l~lg~~~i~~~~~pG- 174 (220)
. ..+....-+.|+++.|+|.++++..+||
T Consensus 203 Fme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G~vsLiaPT~~I~~~gE~~~iDGV~~~Fq~tPgt 282 (655)
T COG2015 203 FMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATGEVSLIAPTKIIEETGETLTIDGVEFEFQMTPGT 282 (655)
T ss_pred HHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccccccccccCceeeecceEEeeccCceEEEeceEEEEeeCCCC
Confidence 1 0112234467999999999999999997
Q ss_pred CCCCCEEEEE
Q 027643 175 HTLGCVTYVS 184 (220)
Q Consensus 175 Ht~gs~~~~~ 184 (220)
.+|.-+-+++
T Consensus 283 EaPAEM~~y~ 292 (655)
T COG2015 283 EAPAEMHFYF 292 (655)
T ss_pred CCcHHHhhhh
Confidence 4555555555
No 50
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.67 E-value=0.00028 Score=61.65 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=38.9
Q ss_pred ecCCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcC---------------------------CCccEEEcCCC
Q 027643 68 EKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELG---------------------------LKLVYAMNTHV 120 (220)
Q Consensus 68 ~~~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~---------------------------~~i~~I~iTH~ 120 (220)
...++.++||+.... .+..+-+|+|.- ..-+...+.+.. ..|...++||.
T Consensus 12 ~~e~nls~~L~~~~~--~~s~ialDagt~-l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~ 88 (335)
T PF02112_consen 12 PDEGNLSAYLVRSIG--SNSFIALDAGTL-LSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHP 88 (335)
T ss_pred CCCCCcceeeeeecC--cCceEEecCccH-HHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCC
Confidence 345666789998754 567889999952 111111111110 02679999999
Q ss_pred CccccCChHHH
Q 027643 121 HADHVTGTGLI 131 (220)
Q Consensus 121 H~DHigG~~~~ 131 (220)
|.||+.|+-.-
T Consensus 89 HLDHi~gLvin 99 (335)
T PF02112_consen 89 HLDHIAGLVIN 99 (335)
T ss_pred chhhHHHHHhc
Confidence 99999998533
No 51
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=96.87 E-value=0.0025 Score=42.04 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=34.1
Q ss_pred EEEEEEecCCCCCcEEEE-eCCCCChHHHHHHHHHcCC---CccEEEcCCCC-ccccCC
Q 027643 74 YTYLLADVNHPDKPALLI-DPVDKTVDRDLNVIKELGL---KLVYAMNTHVH-ADHVTG 127 (220)
Q Consensus 74 ~~~li~~~~~~~~~~ilI-D~G~~~~~~~~~~l~~~~~---~i~~I~iTH~H-~DHigG 127 (220)
.|.+|.. +.+.+|| ++|++ .++. +.+.++ |+..||+|+.. ||++||
T Consensus 13 p~l~l~~----d~~rYlFGn~gEG-tQR~---~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFF----DSRRYLFGNCGEG-TQRA---CNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEe----CCceEEeccCCcH-HHHH---HHHcCCCccccceEEECCCCcccccCC
Confidence 5667766 4678999 99986 3333 333443 58999999999 999997
No 52
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=94.25 E-value=0.67 Score=39.70 Aligned_cols=122 Identities=14% Similarity=0.093 Sum_probs=78.1
Q ss_pred EEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHc---CCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecCCCC---
Q 027643 75 TYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL---GLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS--- 148 (220)
Q Consensus 75 ~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~---~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~~~--- 148 (220)
+.+|.-. +|..+|..|-.. ..++.+.+++. +=.+.||+.--....|-.-++.++++||++++++.+..-.
T Consensus 22 MTVVrL~---~G~L~VhSPvap-T~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg~~s~p~ 97 (285)
T PF14234_consen 22 MTVVRLS---DGGLWVHSPVAP-TPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPGQWSFPL 97 (285)
T ss_pred EEEEEEC---CCCEEEECCCCC-CHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCCcccccc
Confidence 3355443 466788888754 67777777777 3379999987665568889999999999999998765311
Q ss_pred ---------CCcEEcC-CCCEEEeC-CeEEEEEE---CCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCC
Q 027643 149 ---------KADLHVE-HGDKVSFG-DLFLEVRA---TPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRG 206 (220)
Q Consensus 149 ---------~~~~~~~-~g~~l~lg-~~~i~~~~---~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~ 206 (220)
.....+. +.....++ ++....+. ...|.-.-++|+.+ ..+.|+.+|++++-.
T Consensus 98 ~lp~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk------~SkTLIvTDll~nip 163 (285)
T PF14234_consen 98 NLPLSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHK------PSKTLIVTDLLFNIP 163 (285)
T ss_pred cCchhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEEC------CCCeEEhhhchhhCC
Confidence 1111111 11122232 34444443 23466677777764 467899999998643
No 53
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=94.07 E-value=0.092 Score=44.54 Aligned_cols=88 Identities=16% Similarity=0.051 Sum_probs=48.6
Q ss_pred CccEEEcCCCCccccCChH----HHHhhCCCCEEEeecCC----------------------CCCCcEEcCCCCEEEeCC
Q 027643 111 KLVYAMNTHVHADHVTGTG----LIKSKVPGVKSIISKAS----------------------GSKADLHVEHGDKVSFGD 164 (220)
Q Consensus 111 ~i~~I~iTH~H~DHigG~~----~~~~~~p~~~v~~~~~~----------------------~~~~~~~~~~g~~l~lg~ 164 (220)
.|..-++||.|.|||.|+- .+-++- .-.||..+.+ .......+++.+...+.-
T Consensus 112 ~I~~y~ITH~HLDHIsGlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~ 190 (356)
T COG5212 112 SINSYFITHAHLDHISGLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTL 190 (356)
T ss_pred hhhheEeccccccchhceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeee
Confidence 4778899999999999863 333221 2334443221 122234566666555543
Q ss_pred e--EEEEEECCCCC------CCCEEEEEccCCCCCCCcEEEEcCcc
Q 027643 165 L--FLEVRATPGHT------LGCVTYVSGEGPDQPQPRMAFTGDAL 202 (220)
Q Consensus 165 ~--~i~~~~~pGHt------~gs~~~~~~~~~~~~~~~~lftGD~~ 202 (220)
. ++..+++. |- .-+..|.+++. -.+.-+++.||+.
T Consensus 191 t~l~~~pfpv~-Hg~ktG~p~ySs~~lfr~n--kS~~~f~~fGDve 233 (356)
T COG5212 191 TRLTGEPFPVS-HGKKTGSPSYSSMLLFRSN--KSNEFFAYFGDVE 233 (356)
T ss_pred eeecceeeecc-CCcccCCcccceEEEEecC--CCcceEEEecCCC
Confidence 3 33344443 22 22466777651 1245689999985
No 54
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=88.07 E-value=2.5 Score=35.76 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=46.7
Q ss_pred CccEEEcCCCCccccCChHHHHhhCCCCEEEeecCC--------CCCCcEEcCCCCEEEe--CCeEEEEEECCC-CCC--
Q 027643 111 KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS--------GSKADLHVEHGDKVSF--GDLFLEVRATPG-HTL-- 177 (220)
Q Consensus 111 ~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~--------~~~~~~~~~~g~~l~l--g~~~i~~~~~pG-Ht~-- 177 (220)
+++.++.+|.|.||.---....-..-+.++++-+.- .-.....+..+++.++ ++-++++..+|. |..
T Consensus 132 ~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R 211 (343)
T KOG3798|consen 132 DLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTYTIWCLPAQHWGQR 211 (343)
T ss_pred CCceeccccccccccchHHHHhhhccCccceeehhhhhheecCCCCCceeEeeccchhceecCCcEEEEEEcchhhhccc
Confidence 588999999999997543322111112333332211 1111223334444333 455555555553 433
Q ss_pred ----------CCEEEEEccCCCCCCCcEEEEcCccccC
Q 027643 178 ----------GCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (220)
Q Consensus 178 ----------gs~~~~~~~~~~~~~~~~lftGD~~~~~ 205 (220)
+++++.- +..+++|+||+=|..
T Consensus 212 ~L~D~Nk~LW~sw~v~g------~~nrfffaGDTGyc~ 243 (343)
T KOG3798|consen 212 GLFDRNKRLWSSWAVIG------ENNRFFFAGDTGYCD 243 (343)
T ss_pred ccccCCcceeeeeEEec------CCceEEecCCCCccc
Confidence 2444442 456899999997654
No 55
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=86.44 E-value=0.97 Score=43.18 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=41.8
Q ss_pred EeecCCCcEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHh
Q 027643 66 TFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (220)
Q Consensus 66 ~~~~~~~~~~~li~~~~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~ 133 (220)
++.++.++.+ |..- +|-.||+|.|..--.-++..++... +++.|++||.-.|..+|+..+..
T Consensus 42 IfpGg~gdaA-LFav----nGf~iLv~GgserKS~fwklVrHld-rVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 42 IFPGGRGDAA-LFAV----NGFNILVNGGSERKSCFWKLVRHLD-RVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred ECCCCCCcce-eEee----cceEEeecCCcccccchHHHHHHHh-hhhhhhhcccccCccccchHHHH
Confidence 3455555544 4443 4778888888532344555555443 69999999999999999876654
No 56
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=53.38 E-value=31 Score=30.06 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCcEEEEe----CCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecC
Q 027643 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (220)
Q Consensus 85 ~~~~ilID----~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~ 145 (220)
++.++||| +|. +.-.-.+.|++.|.+--++..||.=.= +++....+...--+|++...
T Consensus 214 gk~~iiVDDiIdTgG-Ti~~Aa~~Lk~~GAk~V~a~~tH~vfs--~~a~~~l~~~~i~~vivTnT 275 (314)
T COG0462 214 GKDVVIVDDIIDTGG-TIAKAAKALKERGAKKVYAAATHGVFS--GAALERLEASAIDEVIVTDT 275 (314)
T ss_pred CCEEEEEeccccccH-HHHHHHHHHHHCCCCeEEEEEEchhhC--hHHHHHHhcCCCCEEEEeCC
Confidence 34555555 663 466777899999999889999998653 44444433321235555443
No 57
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=52.95 E-value=47 Score=26.63 Aligned_cols=53 Identities=25% Similarity=0.251 Sum_probs=36.3
Q ss_pred EEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecC
Q 027643 90 LIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (220)
Q Consensus 90 lID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~ 145 (220)
+||+|. +.-...+.|++.|.+--+++.||+-. .++.....+.-+--+++++..
T Consensus 92 iIdtg~-Tl~~aA~~Lk~~GA~~V~~~aTHgvf--s~~A~~~l~~s~Id~vvvTnT 144 (184)
T PF14572_consen 92 IIDTGG-TLIKAAELLKERGAKKVYACATHGVF--SGDAPERLEESPIDEVVVTNT 144 (184)
T ss_dssp EESSTH-HHHHHHHHHHHTTESEEEEEEEEE-----TTHHHHHHHSSESEEEEETT
T ss_pred cccchH-HHHHHHHHHHHcCCCEEEEEEeCccc--CchHHHHHhhcCCeEEEEecc
Confidence 677884 36667788999998888999999877 466666666554456666644
No 58
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=47.15 E-value=25 Score=30.60 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=35.0
Q ss_pred CcEEEEe----CCCCChHHHHHHHHHcCCCccEEEcCCCCccccCCh-HHHHhhCCCCEEEeecC
Q 027643 86 KPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGT-GLIKSKVPGVKSIISKA 145 (220)
Q Consensus 86 ~~~ilID----~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~-~~~~~~~p~~~v~~~~~ 145 (220)
+.++||| +|. +.....+.|++.|.+--+++.||+=. .++. ..+.+. +--+|++...
T Consensus 218 r~viIVDDIidTG~-Tl~~aa~~Lk~~GA~~V~~~~tHglf--~~~a~~~l~~~-~i~~iv~Tdt 278 (320)
T PRK02269 218 KKCILIDDMIDTAG-TICHAADALAEAGATEVYASCTHPVL--SGPALDNIQKS-AIEKLVVLDT 278 (320)
T ss_pred CEEEEEeeecCcHH-HHHHHHHHHHHCCCCEEEEEEECccc--CchHHHHHHhC-CCCEEEEeCC
Confidence 4445554 774 47888899999998888999999644 2333 344332 2335555543
No 59
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=46.73 E-value=24 Score=30.83 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=36.1
Q ss_pred CCcEEEEe----CCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecC
Q 027643 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (220)
Q Consensus 85 ~~~~ilID----~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~ 145 (220)
++.++||| +|. +..+..+.|++.|.+--+++.||+-. .++...-...-+--+|+++..
T Consensus 217 Gr~viIVDDIidTG~-Tl~~aa~~Lk~~GA~~V~~~~THgvf--s~~a~~~l~~s~i~~iv~Tdt 278 (319)
T PRK04923 217 GKTCVLVDDLVDTAG-TLCAAAAALKQRGALKVVAYITHPVL--SGPAVDNINNSQLDELVVTDT 278 (319)
T ss_pred CCEEEEEecccCchH-HHHHHHHHHHHCCCCEEEEEEECccc--CchHHHHHhhCCCCEEEEeCC
Confidence 34556665 663 47778889999998888999999866 344422222222335555543
No 60
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=46.34 E-value=2e+02 Score=25.03 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=54.6
Q ss_pred EEEEEecCCCCCcEEEEe----CCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhh--CCCCEEEeecCCCC
Q 027643 75 TYLLADVNHPDKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSK--VPGVKSIISKASGS 148 (220)
Q Consensus 75 ~~li~~~~~~~~~~ilID----~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~--~p~~~v~~~~~~~~ 148 (220)
..++.|.. +.-+|||| ++ ++.-.-.+.|.+.|.+--+.+.||.= ..-+.+.+. -..-++.+......
T Consensus 206 m~LVGDv~--gkvailVDDm~dt~-GTl~~aa~~L~~~GA~kV~a~~THgV----fs~~a~er~~~s~~~~~vvtnt~p~ 278 (316)
T KOG1448|consen 206 MVLVGDVK--GKVAILVDDMADTC-GTLIKAADKLLEHGAKKVYAIVTHGV----FSGPAIERLNESALDRVVVTNTIPI 278 (316)
T ss_pred EEEEeccC--CcEEEEeccccccc-chHHHHHHHHHhcCCceEEEEEccee----ccccHHHHhhhcccceEEEEEeecc
Confidence 45565543 45566776 22 23555567788888888899999983 333333221 11223333322111
Q ss_pred CCcEEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEEc
Q 027643 149 KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSG 185 (220)
Q Consensus 149 ~~~~~~~~g~~l~lg~~~i~~~~~pGHt~gs~~~~~~ 185 (220)
........-.++++.+...++++-- |...++++.+.
T Consensus 279 ~~~~~~~~~~~Idvs~~~ae~irr~-h~gesvS~lf~ 314 (316)
T KOG1448|consen 279 DDSCLEPKLTTIDVSPVLAEAIRRT-HNGESVSYLFS 314 (316)
T ss_pred cccccCCcccEEeeccccchheEEe-cCCeeeeeecc
Confidence 1111111123455556566666665 88888888763
No 61
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=45.15 E-value=22 Score=31.12 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=27.8
Q ss_pred CCcEEEEe----CCCCChHHHHHHHHHcCCCccEEEcCCCCc
Q 027643 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHA 122 (220)
Q Consensus 85 ~~~~ilID----~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~ 122 (220)
++..+||| +|. +.....+.|++.|.+.-+++.||+=.
T Consensus 230 gr~vlIVDDIidTG~-Tl~~aa~~L~~~Ga~~V~~~~THglf 270 (326)
T PLN02297 230 GRHVVIVDDLVQSGG-TLIECQKVLAAHGAAKVSAYVTHGVF 270 (326)
T ss_pred CCeEEEEecccCcHH-HHHHHHHHHHHCCCcEEEEEEECccc
Confidence 34566665 663 47778889999999989999999643
No 62
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=41.46 E-value=25 Score=30.41 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=26.1
Q ss_pred CcEEEEe----CCCCChHHHHHHHHHcCCCccEEEcCCC
Q 027643 86 KPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHV 120 (220)
Q Consensus 86 ~~~ilID----~G~~~~~~~~~~l~~~~~~i~~I~iTH~ 120 (220)
+.++||| +|. +.....+.|++.|.+--+++.||.
T Consensus 212 r~vIIVDDIidTG~-Tl~~aa~~Lk~~GA~~V~~~~tHg 249 (301)
T PRK07199 212 RTPVLVDDIVSTGR-TLIEAARQLRAAGAASPDCVVVHA 249 (301)
T ss_pred CEEEEEecccCcHH-HHHHHHHHHHHCCCcEEEEEEEee
Confidence 4556665 663 477778899999988889999997
No 63
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=41.17 E-value=53 Score=26.60 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=38.4
Q ss_pred CCcEEEEeCCCC---ChHHHHHHHHHcCCC-ccEEEcCCCCccccCChHHHHhhCCCCEEEeecCC
Q 027643 85 DKPALLIDPVDK---TVDRDLNVIKELGLK-LVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (220)
Q Consensus 85 ~~~~ilID~G~~---~~~~~~~~l~~~~~~-i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~ 146 (220)
+...+|+|+.-. +....++.|++.|.+ |..+.+ .+--.|+..+.+.||++++|.....
T Consensus 122 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~l----l~~~~gl~~l~~~~p~v~i~~~~id 183 (207)
T TIGR01091 122 ERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSI----VAAPEGIEAVEKAHPDVDIYTAAID 183 (207)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCCEEEEEEEC
Confidence 356778886633 356667888888865 332222 2223678888899999999987544
No 64
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=40.88 E-value=65 Score=26.14 Aligned_cols=43 Identities=23% Similarity=0.195 Sum_probs=31.7
Q ss_pred cEEEEe---CCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHH
Q 027643 87 PALLID---PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLI 131 (220)
Q Consensus 87 ~~ilID---~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~ 131 (220)
.++|.| ||.. .-++.+.|.+.+.++-.||+| .|.|--.....+
T Consensus 50 GclllDvrMPg~s-Glelq~~L~~~~~~~PVIfiT-GhgDIpmaV~Am 95 (202)
T COG4566 50 GCLLLDVRMPGMS-GLELQDRLAERGIRLPVIFLT-GHGDIPMAVQAM 95 (202)
T ss_pred CeEEEecCCCCCc-hHHHHHHHHhcCCCCCEEEEe-CCCChHHHHHHH
Confidence 478999 5543 788899999999888888888 677754443333
No 65
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=36.52 E-value=1.2e+02 Score=24.59 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=38.7
Q ss_pred CCcEEEEeCCCC---ChHHHHHHHHHcCCC-ccEEEcCCCCccccCChHHHHhhCCCCEEEeecCC
Q 027643 85 DKPALLIDPVDK---TVDRDLNVIKELGLK-LVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (220)
Q Consensus 85 ~~~~ilID~G~~---~~~~~~~~l~~~~~~-i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~ 146 (220)
++..+|+|+--. +....++.|++.|.+ +..+.+ ..--.|+..+.+++|+.++|+....
T Consensus 124 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~l----l~~~~gl~~l~~~~p~v~i~~~~iD 185 (209)
T PRK00129 124 ERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCL----VAAPEGIKALEEAHPDVEIYTAAID 185 (209)
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCcEEEEEeec
Confidence 456788886532 356667788888754 332222 2334688899999999999987544
No 66
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.96 E-value=39 Score=29.69 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=27.6
Q ss_pred CCcEEEEe----CCCCChHHHHHHHHHcCCCccEEEcCCCCc
Q 027643 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHA 122 (220)
Q Consensus 85 ~~~~ilID----~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~ 122 (220)
++.++||| +|. +.....+.|++.|.+.-+++.||+-.
T Consensus 218 Gk~VIIVDDIi~TG~-Tl~~aa~~Lk~~GA~~V~~~atHglf 258 (332)
T PRK00553 218 NKNCLIVDDMIDTGG-TVIAAAKLLKKQKAKKVCVMATHGLF 258 (332)
T ss_pred CCEEEEEeccccchH-HHHHHHHHHHHcCCcEEEEEEEeeec
Confidence 34566666 553 36677788899998888999999854
No 67
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.29 E-value=1e+02 Score=26.90 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=36.0
Q ss_pred CcEEEEe----CCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecC
Q 027643 86 KPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (220)
Q Consensus 86 ~~~ilID----~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~ 145 (220)
+.++||| +|. +.....+.|++.|.+--+++.||+-. .+++.......+--+|+++..
T Consensus 219 k~viIVDDIidTG~-Tl~~aa~~Lk~~GA~~V~~~~tHgif--~~~a~~~l~~s~i~~iv~TdT 279 (323)
T PRK02458 219 KKAILIDDILNTGK-TFAEAAKIVEREGATEIYAVASHGLF--AGGAAEVLENAPIKEILVTDS 279 (323)
T ss_pred CEEEEEcceeCcHH-HHHHHHHHHHhCCCCcEEEEEEChhc--CchHHHHHhhCCCCEEEEECC
Confidence 4455555 663 47777888999998888899999855 344443333322335666544
No 68
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=31.63 E-value=51 Score=26.67 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCCC---hHHHHHHHHHcCCCc-----cEEEcCCCCccccCChHHHHhhCCCCEEEeecC
Q 027643 85 DKPALLIDPVDKT---VDRDLNVIKELGLKL-----VYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (220)
Q Consensus 85 ~~~~ilID~G~~~---~~~~~~~l~~~~~~i-----~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~ 145 (220)
..+.+|+||-.++ ....++.|++.|.+. -.++.|- .|+..+.++||+++||....
T Consensus 121 ~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~------~Gl~~l~~~~P~v~I~ta~i 183 (207)
T PF14681_consen 121 NRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASP------EGLERLLKAFPDVRIYTAAI 183 (207)
T ss_dssp TSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEH------HHHHHHHHHSTTSEEEEEEE
T ss_pred CCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecH------HHHHHHHHhCCCeEEEEEEE
Confidence 4667888876332 555677778877643 2444443 38999999999999998653
No 69
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=30.62 E-value=52 Score=26.66 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=49.8
Q ss_pred EEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHH-hhCCCCEEEeecCCCCCCcEEcCCCCEEEeCCeE
Q 027643 88 ALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIK-SKVPGVKSIISKASGSKADLHVEHGDKVSFGDLF 166 (220)
Q Consensus 88 ~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~-~~~p~~~v~~~~~~~~~~~~~~~~g~~l~lg~~~ 166 (220)
.+-|||| .++.++++++.+ +..|++| +|+..+. +.+.+. ..+.. ......+.....++..+..
T Consensus 71 ~i~Idp~---fKef~e~ike~d--i~fiVvS-------sGm~~fI~~lfe~i---vgke~-i~~idi~sn~~~ih~dg~h 134 (220)
T COG4359 71 DIKIDPG---FKEFVEWIKEHD--IPFIVVS-------SGMDPFIYPLFEGI---VGKER-IYCIDIVSNNDYIHIDGQH 134 (220)
T ss_pred hcccCcc---HHHHHHHHHHcC--CCEEEEe-------CCCchHHHHHHHhh---ccccc-eeeeEEeecCceEcCCCce
Confidence 4778999 688889998886 5566665 3444332 222111 10000 0001122222333333321
Q ss_pred EEEE---ECCCCCCCCEEEEEccCCCCCCCcEEEEcCcccc
Q 027643 167 LEVR---ATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLI 204 (220)
Q Consensus 167 i~~~---~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~ 204 (220)
.-.. ..-||.-+++.=.+.+ +..+++|+||.+--
T Consensus 135 ~i~~~~ds~fG~dK~~vI~~l~e----~~e~~fy~GDsvsD 171 (220)
T COG4359 135 SIKYTDDSQFGHDKSSVIHELSE----PNESIFYCGDSVSD 171 (220)
T ss_pred eeecCCccccCCCcchhHHHhhc----CCceEEEecCCccc
Confidence 1111 2347777666555554 56779999998653
No 70
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=27.69 E-value=62 Score=29.61 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=34.8
Q ss_pred CcEEEEe----CCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEeecC
Q 027643 86 KPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (220)
Q Consensus 86 ~~~ilID----~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~ 145 (220)
..++||| +|. +.....+.|++.|.+--+++.||+-.. ++...-...-+--+|+++..
T Consensus 336 k~vIIVDDIIdTG~-Tl~~aa~~Lk~~GA~~V~~~~THglfs--~~A~~rl~~s~i~~IvvTdT 396 (439)
T PTZ00145 336 SDVIIVDDMIDTSG-TLCEAAKQLKKHGARRVFAFATHGLFS--GPAIERIEASPLEEVVVTDT 396 (439)
T ss_pred CEEEEEcceeCcHH-HHHHHHHHHHHcCCCEEEEEEEcccCC--hhHHHHHhcCCCCEEEEeCC
Confidence 4455555 663 367777888889988779999998763 34332222222335555543
No 71
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=27.64 E-value=64 Score=30.58 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCCccccCChHHHHhhCCCCEEEeecCCCCCCc-----EEcCCCCEEEeCCeEEEEEECCCCCC
Q 027643 119 HVHADHVTGTGLIKSKVPGVKSIISKASGSKAD-----LHVEHGDKVSFGDLFLEVRATPGHTL 177 (220)
Q Consensus 119 H~H~DHigG~~~~~~~~p~~~v~~~~~~~~~~~-----~~~~~g~~l~lg~~~i~~~~~pGHt~ 177 (220)
=.|.|| |--.+++.+.+..|.+.+.-+.... ..+. .|.+++++.||||..
T Consensus 159 MGHVDH--GKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-------~G~~iTFLDTPGHaA 213 (683)
T KOG1145|consen 159 MGHVDH--GKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-------SGKSITFLDTPGHAA 213 (683)
T ss_pred eecccC--ChhhHHHHHhhCceehhhcCCccceeceEEEecC-------CCCEEEEecCCcHHH
Confidence 467788 5556666655666766655433221 2222 356789999999974
No 72
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=27.39 E-value=1.6e+02 Score=27.65 Aligned_cols=93 Identities=12% Similarity=0.187 Sum_probs=60.0
Q ss_pred CccEEEcCCCCccccCChHHHHhhC-CCCEEEeecCC---------------------------CC---------C----
Q 027643 111 KLVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKAS---------------------------GS---------K---- 149 (220)
Q Consensus 111 ~i~~I~iTH~H~DHigG~~~~~~~~-p~~~v~~~~~~---------------------------~~---------~---- 149 (220)
.||.|++|..|. ..|+|++-+.. -..+||+.+.+ .. +
T Consensus 96 tiDvILISNy~~--mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsplk~~ 173 (653)
T KOG1138|consen 96 TIDVILISNYMG--MLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPLKKA 173 (653)
T ss_pred ceeEEEEcchhh--hcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCchhh
Confidence 489999999987 88999987753 13588887642 00 0
Q ss_pred --------------------CcEEcCCCCEEEeCC-eEEEEEECCCCCCCCEEEEEccCCCCCCCcEEEEcCccccCCcc
Q 027643 150 --------------------ADLHVEHGDKVSFGD-LFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCG 208 (220)
Q Consensus 150 --------------------~~~~~~~g~~l~lg~-~~i~~~~~pGHt~gs~~~~~~~~~~~~~~~~lftGD~~~~~~~~ 208 (220)
....+.-.+.+++-| +.++.+ ..||+-|+.-+.+.. +..++-|..+.-+..-..
T Consensus 174 ~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtpl-sSG~~lGSsnW~I~t----~nek~sYvS~Ss~ltth~ 248 (653)
T KOG1138|consen 174 VFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPL-SSGYDLGSSNWLINT----PNEKLSYVSGSSFLTTHP 248 (653)
T ss_pred ccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEec-cccccccccceEEec----CCcceEEEecCcccccCC
Confidence 002334456666643 445444 458999998887765 667777777776555444
Q ss_pred cC
Q 027643 209 RT 210 (220)
Q Consensus 209 ~~ 210 (220)
|.
T Consensus 249 r~ 250 (653)
T KOG1138|consen 249 RP 250 (653)
T ss_pred cc
Confidence 43
No 73
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.07 E-value=79 Score=27.34 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=25.9
Q ss_pred CCcEEEEeCCC---CChHHHHHHHHHcCCCccEEEcCCCCc
Q 027643 85 DKPALLIDPVD---KTVDRDLNVIKELGLKLVYAMNTHVHA 122 (220)
Q Consensus 85 ~~~~ilID~G~---~~~~~~~~~l~~~~~~i~~I~iTH~H~ 122 (220)
++..+|||--- ++.....+.|++.|.+--+++.||.=.
T Consensus 201 gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~ 241 (304)
T PRK03092 201 GRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVL 241 (304)
T ss_pred CCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccC
Confidence 35577777442 236666788888888767778899843
No 74
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=25.05 E-value=43 Score=32.49 Aligned_cols=47 Identities=19% Similarity=0.033 Sum_probs=34.7
Q ss_pred CCcEEEEeCCCCChHHHHHHHHHcCCCccEEEcCCCCccccCChHHHH
Q 027643 85 DKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIK 132 (220)
Q Consensus 85 ~~~~ilID~G~~~~~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~ 132 (220)
+....++.+|.+ .+++...-+-..-+++.||+|=.+|+-+||++.+.
T Consensus 72 ~~~~~~~n~Geg-~qr~~~ehk~~~sk~~~iflt~~~w~~~GglpGl~ 118 (746)
T KOG2121|consen 72 DRKRFIFNCGEG-TQRLLTEHKIKLSKLDSIFLTRVCWSSCGGLPGLL 118 (746)
T ss_pred chhhhhhhhhHH-HHHHHHHhhhhhhhhhheEeecccHHHhCCCccce
Confidence 366788888875 44444444434456899999999999999998763
No 75
>PLN02335 anthranilate synthase
Probab=23.44 E-value=1.3e+02 Score=24.64 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCCCCcEEEEeCCCCChHHHHHHHHHcCCCcc
Q 027643 82 NHPDKPALLIDPVDKTVDRDLNVIKELGLKLV 113 (220)
Q Consensus 82 ~~~~~~~ilID~G~~~~~~~~~~l~~~~~~i~ 113 (220)
++..+..+|||-+.+....+.++|++.|..+.
T Consensus 15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~ 46 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFE 46 (222)
T ss_pred cCccCcEEEEECCCCHHHHHHHHHHHCCCcEE
Confidence 34467789999887668888999999875443
No 76
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=23.33 E-value=1.8e+02 Score=22.91 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCccEEEcCCCCccccCChHHHHhhCCCCEEEee
Q 027643 99 DRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (220)
Q Consensus 99 ~~~~~~l~~~~~~i~~I~iTH~H~DHigG~~~~~~~~p~~~v~~~ 143 (220)
-+....|++.|..+|.|+- |.=| |..-++++.+|++++++-
T Consensus 54 ~~a~~~L~~~Gf~PDvI~~-H~GW---Ge~Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 54 ARAARQLRAQGFVPDVIIA-HPGW---GETLFLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHHHcCCCCCEEEE-cCCc---chhhhHHHhCCCCcEEEE
Confidence 3345667777887886654 4443 556677788999988764
No 77
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=22.78 E-value=2.3e+02 Score=20.09 Aligned_cols=64 Identities=25% Similarity=0.276 Sum_probs=37.0
Q ss_pred CCCccccC-ChHHHHhhCCCCEEEeecCCCCCCcEEcCCCCEEEe----CCeEEEEEECCCCCCCCEEEEE
Q 027643 119 HVHADHVT-GTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSF----GDLFLEVRATPGHTLGCVTYVS 184 (220)
Q Consensus 119 H~H~DHig-G~~~~~~~~p~~~v~~~~~~~~~~~~~~~~g~~l~l----g~~~i~~~~~pGHt~gs~~~~~ 184 (220)
|.|.++.. ..+.+....+...+++++..... .-+++|+.+.+ |.+++.+.-.++=.+|.+.+..
T Consensus 15 ~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~~--lgi~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~~ 83 (122)
T cd02791 15 QWHTMTRTGRVPRLNAHVPEPYVEIHPEDAAR--LGLKEGDLVRVTSRRGEVVLRVRVTDRVRPGEVFVPM 83 (122)
T ss_pred hhccCCccCChHHHHhhCCCCEEEECHHHHHH--cCCCCCCEEEEEcCCEEEEEEEEECCCcCCCeEEEec
Confidence 45666543 35566666666667777654332 34567777766 2355666666655566665443
No 78
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.21 E-value=77 Score=27.44 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=26.6
Q ss_pred CCcEEEEeCCCC---ChHHHHHHHHHcCCCccEEEcCCCCc
Q 027643 85 DKPALLIDPVDK---TVDRDLNVIKELGLKLVYAMNTHVHA 122 (220)
Q Consensus 85 ~~~~ilID~G~~---~~~~~~~~l~~~~~~i~~I~iTH~H~ 122 (220)
++..+|||-... +.....+.+++.|.+.-.++.||.-.
T Consensus 208 g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~ 248 (309)
T PRK01259 208 GRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVL 248 (309)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEEeeeC
Confidence 355677774422 35666778888888888899999855
No 79
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.18 E-value=82 Score=27.64 Aligned_cols=38 Identities=32% Similarity=0.434 Sum_probs=26.6
Q ss_pred CCcEEEEeCCCC---ChHHHHHHHHHcCCCccEEEcCCCCc
Q 027643 85 DKPALLIDPVDK---TVDRDLNVIKELGLKLVYAMNTHVHA 122 (220)
Q Consensus 85 ~~~~ilID~G~~---~~~~~~~~l~~~~~~i~~I~iTH~H~ 122 (220)
++..+|||-.-. +.....+.|++.|.+--+++.||.=.
T Consensus 230 g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~ 270 (330)
T PRK02812 230 GKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVF 270 (330)
T ss_pred CCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEcccC
Confidence 455777774422 35666778888888888999999743
No 80
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=21.20 E-value=56 Score=25.43 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=15.9
Q ss_pred cEEEEeCCCCChHHHHHHHHHcCCC
Q 027643 87 PALLIDPVDKTVDRDLNVIKELGLK 111 (220)
Q Consensus 87 ~~ilID~G~~~~~~~~~~l~~~~~~ 111 (220)
..+|||.|.++.....+.|++.|+.
T Consensus 81 DLilIDGG~gQl~aa~~~l~~lgl~ 105 (155)
T PF08459_consen 81 DLILIDGGKGQLNAAKEVLKELGLN 105 (155)
T ss_dssp SEEEESSSHHHHHHHHHHHHCTT--
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 4678887765566666777766654
No 81
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.92 E-value=89 Score=26.65 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=25.9
Q ss_pred CCcEEEEeCCC---CChHHHHHHHHHcCCCccEEEcCCCC
Q 027643 85 DKPALLIDPVD---KTVDRDLNVIKELGLKLVYAMNTHVH 121 (220)
Q Consensus 85 ~~~~ilID~G~---~~~~~~~~~l~~~~~~i~~I~iTH~H 121 (220)
++..+|||-.. ++.....+.|++.|.+.-.++.||.-
T Consensus 204 Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i 243 (285)
T PRK00934 204 GKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPV 243 (285)
T ss_pred CCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeec
Confidence 35567777432 23667778888899887788888863
No 82
>PLN02541 uracil phosphoribosyltransferase
Probab=20.38 E-value=1.5e+02 Score=24.82 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=38.9
Q ss_pred CcEEEEeCCCC---ChHHHHHHHHHcCCCcc-EEEcCCCCccccCChHHHHhhCCCCEEEeecCCC
Q 027643 86 KPALLIDPVDK---TVDRDLNVIKELGLKLV-YAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG 147 (220)
Q Consensus 86 ~~~ilID~G~~---~~~~~~~~l~~~~~~i~-~I~iTH~H~DHigG~~~~~~~~p~~~v~~~~~~~ 147 (220)
+..+|+|+--. +....++.|++.|.+.. .+|++=.= --.|+..+.+.||+++||......
T Consensus 158 ~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ia--s~~Gl~~i~~~fP~v~I~ta~ID~ 221 (244)
T PLN02541 158 SRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVA--APPALKKLSEKFPGLHVYAGIIDE 221 (244)
T ss_pred CEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEE--CHHHHHHHHHHCcCCEEEEEEECc
Confidence 46889997633 35566778888887522 22221110 026899999999999999876543
No 83
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=20.21 E-value=1.5e+02 Score=23.50 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.9
Q ss_pred EEEeCCCCChHHHHHHHHHcCCC
Q 027643 89 LLIDPVDKTVDRDLNVIKELGLK 111 (220)
Q Consensus 89 ilID~G~~~~~~~~~~l~~~~~~ 111 (220)
++||.|.++...+.+.+++.|..
T Consensus 2 ~i~d~g~~~~~~~~~~l~~~g~~ 24 (198)
T cd01748 2 AIIDYGMGNLRSVANALERLGAE 24 (198)
T ss_pred EEEeCCCChHHHHHHHHHHCCCe
Confidence 68999988899999999998753
No 84
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.07 E-value=3e+02 Score=19.30 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=37.0
Q ss_pred CCCccc-cCChHHHHhhCCCCEEEeecCCCCCCcEEcCCCCEEEeC----CeEEEEEECCCCCCCCEEEEE
Q 027643 119 HVHADH-VTGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFG----DLFLEVRATPGHTLGCVTYVS 184 (220)
Q Consensus 119 H~H~DH-igG~~~~~~~~p~~~v~~~~~~~~~~~~~~~~g~~l~lg----~~~i~~~~~pGHt~gs~~~~~ 184 (220)
|.|..+ ....+.+.+..+...+++++..... .-+++|+.+.+- .+++.+.-.++-.+|.+.+..
T Consensus 15 ~~~s~~~~~~~~~l~~~~~~~~v~inp~dA~~--lgi~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~~ 83 (120)
T cd00508 15 HWHTGTMTRRSPRLAALAPEPFVEIHPEDAAR--LGIKDGDLVRVSSRRGSVVVRARVTDRVRPGTVFMPF 83 (120)
T ss_pred hccCcccccccHHHHhhCCCCEEEECHHHHHH--cCCCCCCEEEEEeCCEEEEEEEEECCCcCCCEEEEec
Confidence 334443 2345666666666678887754332 345677777662 345556666666667665543
Done!