BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027644
MALFASILSTPVSASVPIGRRLINGRSHSRLFASLSPSESSPSTPATTSSNNETAVSSRT
PPSKPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLA
GSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGL
FISNVPPNVAPNVDRALKGSSLFGMFSLKLSQLHCSNLPN

High Scoring Gene Products

Symbol, full name Information P value
AT5G13720 protein from Arabidopsis thaliana 4.1e-45
AT4G19390 protein from Arabidopsis thaliana 4.9e-21

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027644
        (220 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2173239 - symbol:AT5G13720 species:3702 "Arabi...   447  4.1e-45   2
TAIR|locus:2140411 - symbol:AT4G19390 "AT4G19390" species...   247  4.9e-21   1


>TAIR|locus:2173239 [details] [associations]
            symbol:AT5G13720 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009706
            "chloroplast inner membrane" evidence=IDA] [GO:0009941 "chloroplast
            envelope" evidence=IDA] EMBL:CP002688 EMBL:AB006704 GO:GO:0009706
            UniGene:At.43777 UniGene:At.49018 InterPro:IPR005134 Pfam:PF03350
            InterPro:IPR016804 PIRSF:PIRSF022348 EMBL:AY150387 IPI:IPI00538391
            RefSeq:NP_196876.1 IntAct:Q9FNA1 STRING:Q9FNA1 PRIDE:Q9FNA1
            EnsemblPlants:AT5G13720.1 GeneID:831217 KEGG:ath:AT5G13720
            TAIR:At5g13720 InParanoid:Q9FNA1 OMA:NGCVYIV PhylomeDB:Q9FNA1
            ProtClustDB:CLSN2687039 Genevestigator:Q9FNA1 Uniprot:Q9FNA1
        Length = 262

 Score = 447 (162.4 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 85/124 (68%), Positives = 97/124 (78%)

Query:    87 DSPLG-FFRSIESNIERLIFDFRFXXXXXXXXXXXXXXXCFLNGCIYIVDAYKVYWTSCV 145
             DSP   FFRS ESN+ER+IFDFRF               CFLNGC+YIV+AYKVYWT+C 
Sbjct:    69 DSPFAQFFRSTESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCS 128

Query:   146 KGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGM 205
             KG+HTG+MVLRLVEAIDVYLAGTVMLIF MGLYGLFIS+ P +V P  DRAL+ SSLFGM
Sbjct:   129 KGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYGLFISHSPHDVPPESDRALRSSSLFGM 188

Query:   206 FSLK 209
             F++K
Sbjct:   189 FAMK 192

 Score = 44 (20.5 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query:     1 MALFASILSTPVSASVP 17
             MAL + I +TP+S SVP
Sbjct:     1 MALSSLISATPLSLSVP 17


>TAIR|locus:2140411 [details] [associations]
            symbol:AT4G19390 "AT4G19390" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009941 "chloroplast envelope" evidence=IDA]
            EMBL:CP002687 GO:GO:0009941 InterPro:IPR005134 Pfam:PF03350
            EMBL:AF378856 IPI:IPI00545210 RefSeq:NP_567583.1 UniGene:At.19094
            EnsemblPlants:AT4G19390.1 GeneID:827680 KEGG:ath:AT4G19390
            TAIR:At4g19390 InParanoid:Q94JM4 OMA:LCFIKGC PhylomeDB:Q94JM4
            ProtClustDB:CLSN2917585 Genevestigator:Q94JM4 InterPro:IPR016804
            PIRSF:PIRSF022348 Uniprot:Q94JM4
        Length = 273

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 51/117 (43%), Positives = 71/117 (60%)

Query:    93 FRSIESNIERLIFDFRFXXXXXXXXXXXXXXXCFLNGCIYIVDAYKVYWTSCVKGVHTGK 152
             F ++E  IE++I+  RF               CF+ GC+Y+VD++  Y       V+ GK
Sbjct:    94 FEALEEGIEKVIYSCRFMTFLGTLGSLLGSVLCFIKGCMYVVDSFLQY------SVNRGK 147

Query:   153 MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLK 209
             ++  LVEAID+YL GTVML+FG+GLY LFISN+  + +   D     SSLFGMF+LK
Sbjct:   148 VIFLLVEAIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFTLK 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       185   0.00080  110 3  11 22  0.37    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.06u 0.15s 14.21t   Elapsed:  00:00:01
  Total cpu time:  14.06u 0.15s 14.21t   Elapsed:  00:00:01
  Start:  Sat May 11 02:24:47 2013   End:  Sat May 11 02:24:48 2013

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