BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027644
         (220 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P06701|SIR3_YEAST Regulatory protein SIR3 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=SIR3 PE=1 SV=6
          Length = 978

 Score = 32.3 bits (72), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 6   SILSTPVSASVPIGRRLINGRSHSRLFASLSPSESSPSTPATTSSNNETAVSSRTPPSKP 65
           S L++P  +S  + +R I+      L  S     +S    +    NNET+V S  P SKP
Sbjct: 291 SALTSPTDSSKILQKRSIS----KELIVSEEIPINSSEQESDYEPNNETSVLSSKPGSKP 346

Query: 66  FAESSRQHDPSFNYARAN 83
              S+   D   N+  AN
Sbjct: 347 EKTSTELVDGRENFVYAN 364


>sp|Q5BBL4|HSE1_EMENI Class E vacuolar protein-sorting machinery protein hse1
           OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
           CBS 112.46 / NRRL 194 / M139) GN=hse1 PE=3 SV=1
          Length = 581

 Score = 32.3 bits (72), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 64  KPFAESSRQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSL 123
           +P  ESS       N A+A PAG  P G   +  S + R ++DF+         S  G L
Sbjct: 184 QPQVESSSSVSAPENQAQAAPAGPVPSGTSAATVSRV-RALYDFQ--------PSEPGEL 234

Query: 124 LCFLNGCIYIVDA-YKVYWTSCVKGVHTGKMVLRLVEAI 161
                  I ++++ YK +W   ++G  TG   L  VE +
Sbjct: 235 QFRKGDVIAVLESVYKDWWKGSLRG-QTGIFPLNYVEKL 272


>sp|Q69YN4|VIR_HUMAN Protein virilizer homolog OS=Homo sapiens GN=KIAA1429 PE=1 SV=2
          Length = 1812

 Score = 31.2 bits (69), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 83  NPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIV 134
           NP G S +G   S+E N++ LI    + +  A+G S +   + +   CI I+
Sbjct: 805 NPVGRSAVGHVFSLEKNLQSLITLMEYYSKEALGDSKSKKSVAYNYACILIL 856


>sp|Q216P6|SYC_RHOPB Cysteine--tRNA ligase OS=Rhodopseudomonas palustris (strain BisB18)
           GN=cysS PE=3 SV=1
          Length = 488

 Score = 30.8 bits (68), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 16  VPIGRRLINGRSHSRLFAS 34
           +PIGR  I GR H RL+A 
Sbjct: 394 IPIGREFIQGRKHVRLYAE 412


>sp|Q9U1I1|ESN_DROME Protein espinas OS=Drosophila melanogaster GN=esn PE=2 SV=1
          Length = 785

 Score = 30.4 bits (67), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 31  LFASLSPSESSPSTPATTSSNNETAVSSRTPPSKPFAES-----SRQHDPSFNYARANPA 85
           ++ S++ S+  P TP+ TSS  +   + R   S   A+S      R+ DP       +P 
Sbjct: 418 IYCSIACSKGEPPTPSDTSSGPQLRPTHRASTSSQIAKSPRRGGERERDPGRKAHHGHPK 477

Query: 86  GDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAG 121
                G    +    ER   +   +A L +GG + G
Sbjct: 478 ATGSAG---DLLERQERQRMEAAGVADLLLGGGVPG 510


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,186,863
Number of Sequences: 539616
Number of extensions: 3139746
Number of successful extensions: 14856
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 14621
Number of HSP's gapped (non-prelim): 274
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)