Query 027644
Match_columns 220
No_of_seqs 130 out of 362
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 13:02:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05208 hypothetical protein; 100.0 3.5E-31 7.6E-36 223.5 11.7 111 93-212 2-113 (168)
2 TIGR00645 HI0507 conserved hyp 100.0 2.6E-29 5.7E-34 212.1 10.8 108 96-212 1-109 (167)
3 PF03350 UPF0114: Uncharacteri 100.0 1.1E-28 2.5E-33 197.6 9.6 108 103-213 1-108 (124)
4 COG2862 Predicted membrane pro 99.9 1.2E-25 2.7E-30 190.2 9.1 105 94-205 2-107 (169)
5 PF01618 MotA_ExbB: MotA/TolQ/ 79.2 14 0.0003 29.6 7.8 82 96-186 47-128 (139)
6 TIGR02805 exbB2 tonB-system en 57.7 52 0.0011 27.7 7.0 84 95-187 46-129 (138)
7 TIGR02797 exbB tonB-system ene 46.4 1.4E+02 0.0031 25.8 8.3 77 106-187 115-193 (211)
8 PF12430 ABA_GPCR: Abscisic ac 41.7 2.3E+02 0.005 24.4 8.8 23 152-174 123-145 (196)
9 PF01534 Frizzled: Frizzled/Sm 41.5 1.2E+02 0.0026 28.5 7.4 78 107-185 179-256 (328)
10 COG4239 ABC-type uncharacteriz 40.1 1.6E+02 0.0035 28.2 8.0 37 95-131 128-164 (341)
11 PF12273 RCR: Chitin synthesis 38.9 22 0.00048 28.4 1.9 9 108-116 1-9 (130)
12 PF07423 DUF1510: Protein of u 35.8 26 0.00056 31.4 2.1 21 164-184 18-38 (217)
13 PF07578 LAB_N: Lipid A Biosyn 32.2 1.6E+02 0.0035 22.3 5.5 34 99-132 3-50 (72)
14 PF06195 DUF996: Protein of un 29.6 3.2E+02 0.007 22.5 8.1 27 159-185 113-139 (139)
15 PRK04214 rbn ribonuclease BN/u 29.5 5E+02 0.011 24.6 10.2 34 90-123 81-114 (412)
16 PF13131 DUF3951: Protein of u 25.9 62 0.0013 23.4 2.2 18 171-188 17-34 (53)
17 KOG2568 Predicted membrane pro 25.9 2.5E+02 0.0054 28.5 7.2 25 152-176 270-294 (518)
18 TIGR03017 EpsF chain length de 25.8 1E+02 0.0022 28.7 4.3 23 100-122 6-28 (444)
19 PF05283 MGC-24: Multi-glycosy 25.7 2.9E+02 0.0064 24.3 6.8 10 113-122 161-170 (186)
20 PHA02681 ORF089 virion membran 25.4 60 0.0013 25.7 2.2 24 159-182 2-25 (92)
21 PRK09881 D-ala-D-ala transport 25.0 5.2E+02 0.011 23.4 10.1 34 98-131 84-117 (296)
22 PF03348 Serinc: Serine incorp 24.3 6.2E+02 0.014 24.6 9.4 83 97-179 104-207 (429)
23 PF04156 IncA: IncA protein; 24.0 4.1E+02 0.009 21.9 8.1 30 157-186 37-66 (191)
24 PF02038 ATP1G1_PLM_MAT8: ATP1 23.7 1.1E+02 0.0024 21.8 3.1 17 116-132 16-32 (50)
25 PRK15021 microcin C ABC transp 23.5 4.3E+02 0.0093 24.9 7.9 36 97-132 130-165 (341)
26 PF14800 DUF4481: Domain of un 23.2 2.1E+02 0.0045 27.3 5.7 27 153-179 95-121 (308)
27 PRK10801 colicin uptake protei 23.1 4.8E+02 0.01 23.1 7.8 39 149-187 160-198 (227)
28 PF07234 DUF1426: Protein of u 22.6 4.4E+02 0.0095 21.6 7.8 48 94-141 6-53 (117)
29 PRK10617 cytochrome c-type pro 21.4 3.8E+02 0.0082 23.7 6.7 12 88-99 6-17 (200)
30 PF03189 Otopetrin: Otopetrin; 20.8 2.2E+02 0.0047 27.7 5.6 33 153-187 271-303 (441)
No 1
>PRK05208 hypothetical protein; Provisional
Probab=99.97 E-value=3.5e-31 Score=223.55 Aligned_cols=111 Identities=22% Similarity=0.270 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHH
Q 027644 93 FRSIESNIERLIFDFRFLALLAVGGSLAGSLLCF-LNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVML 171 (220)
Q Consensus 93 ~~~iE~~fEriLf~SRwLvLlpV~~sLlgSllLF-i~G~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLL 171 (220)
.+++|+.||+++|+|||++ +|||+||++++.+| ++|++|++|.+.+.++ .++++++++++++||+||+|++|+
T Consensus 2 ~~~~e~~~E~~l~~sRwl~-~pv~~gLi~a~~l~~~~f~~el~~~~~~~~~-----~~~~~~il~vl~lIDl~Lia~lLl 75 (168)
T PRK05208 2 IKRMERIIERLIFASRWLQ-APLYLGLSLALAVLVYKFFQELWHLLPHVFS-----LDESDLILVVLSLIDVVLVANLLV 75 (168)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999996 99999999999999 9999999999888886 678899999999999999999999
Q ss_pred HHhhhcchhccccCCCCCCCCcccccccCCccccccccccc
Q 027644 172 IFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKLSQ 212 (220)
Q Consensus 172 Ifs~GLYELFISkid~~~~~~~p~wL~i~SLd~lf~lker~ 212 (220)
||++|+|||||||+|.++|++.|+||.+.|+| .||.+.
T Consensus 76 Iv~~ggYElFISkid~~~~~~~p~wL~~~~l~---~LK~KL 113 (168)
T PRK05208 76 MVIFSGYENFVSRLDIDGHPDEPEWLGKVDAS---SLKVKL 113 (168)
T ss_pred HHHhhhHHHhhccCccccCCCCCccceecCHH---HHHHHH
Confidence 99999999999999999999999999999999 556553
No 2
>TIGR00645 HI0507 conserved hypothetical transmembrane protein. This conserved hypothetical protein with four predicted transmembrane regions is found in E. coli, Haemophilus influenzae, and Helicobacter pylori, among completed genomes. A similar protein from Aquifex aeolicus appears to share a central region of homology and a similar overall arrangement of hydrophobic stretches, and forms a bidirectional best hit with several members of the seed alignment. However, it is uncertain whether the observed similarity represents full-length homology and/or equivalent function, and so it is excluded from the seed and scores below the trusted cutoff.
Probab=99.96 E-value=2.6e-29 Score=212.06 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 027644 96 IESNIERLIFDFRFLALLAVGGSLAGSLLC-FLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFG 174 (220)
Q Consensus 96 iE~~fEriLf~SRwLvLlpV~~sLlgSllL-Fi~G~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLLIfs 174 (220)
+|+.||++||+|||+ ++|||+||++++.+ .+++++|++|.+.+... .+++++++.++++||+||+|++|+||+
T Consensus 1 ~e~~~E~~l~~SRwl-l~pvy~gLi~a~~l~~~~f~~el~~~~~~~~~-----~~~~~~il~vl~lID~~Lia~lLlIv~ 74 (167)
T TIGR00645 1 QENIIEKIIFASRWL-LAPIYLGLSLTLVILSYKFIKELWHLLINVND-----MDENDLMLGVLNLVDVVMIAGLLVMVT 74 (167)
T ss_pred ChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----ccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999 79999999999665 45567778877665543 678899999999999999999999999
Q ss_pred hhcchhccccCCCCCCCCcccccccCCccccccccccc
Q 027644 175 MGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKLSQ 212 (220)
Q Consensus 175 ~GLYELFISkid~~~~~~~p~wL~i~SLd~lf~lker~ 212 (220)
+|+|||||||+|.++|++.|+||.+.|+| .||.+.
T Consensus 75 ~ggYElFISkid~~~~~~~p~wL~~~~l~---~LK~KL 109 (167)
T TIGR00645 75 IGGYEIFVSKLDTRNHPEQPEWLSHVDAT---VLKVKV 109 (167)
T ss_pred hccHhHhhccCccccCCCCCCceeecCHH---HHHHHH
Confidence 99999999999999999999999999999 556543
No 3
>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes.
Probab=99.95 E-value=1.1e-28 Score=197.60 Aligned_cols=108 Identities=35% Similarity=0.514 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHHHHhhhcchhcc
Q 027644 103 LIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFI 182 (220)
Q Consensus 103 iLf~SRwLvLlpV~~sLlgSllLFi~G~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLLIfs~GLYELFI 182 (220)
++|+|||+++++++++++++++||++|++|+++.+.++++....+.++++++..+++++|+||+|++++||++|+|||||
T Consensus 1 ~l~~sR~l~~~~vig~l~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~~~g~YelFI 80 (124)
T PF03350_consen 1 LLFASRWLVLPAVIGLLLGSVLLFVKGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIFAFGLYELFI 80 (124)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeeE
Confidence 47999999999999999999999999999999999999986566677889999999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccccCCcccccccccccc
Q 027644 183 SNVPPNVAPNVDRALKGSSLFGMFSLKLSQL 213 (220)
Q Consensus 183 Skid~~~~~~~p~wL~i~SLd~lf~lker~~ 213 (220)
||+|.+++++.|+||+++|+| +||.|..
T Consensus 81 s~~~~~~~~~~p~wL~i~s~~---~LK~KL~ 108 (124)
T PF03350_consen 81 SKLDIAEHDDRPKWLGIRSLD---DLKLKLG 108 (124)
T ss_pred ecccccccCcccCcccccCHH---HHHHHHH
Confidence 999999988999999999999 6777643
No 4
>COG2862 Predicted membrane protein [Function unknown]
Probab=99.92 E-value=1.2e-25 Score=190.17 Aligned_cols=105 Identities=23% Similarity=0.289 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHHH
Q 027644 94 RSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNG-CIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLI 172 (220)
Q Consensus 94 ~~iE~~fEriLf~SRwLvLlpV~~sLlgSllLFi~G-~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLLI 172 (220)
+++|++|||+||+|||+. +|||+||++++++|.++ ..++||.+.++++ .++.++++.++++||++|+|++|+|
T Consensus 2 ~~~e~~~e~~i~~SRwll-~pv~~gLi~al~lf~~~f~~~i~~~~~~~~~-----~~e~~lil~~l~liDl~Lva~lLvm 75 (169)
T COG2862 2 SMLEKIIERLIFASRWLL-APVYLGLIVALVLFAYKFFKEIWHLLPNLFD-----MGENDLILAALSLVDLLLVAGLLVM 75 (169)
T ss_pred CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccccc-----cCchhHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999885 89999999999988777 4446666666665 5588999999999999999999999
Q ss_pred HhhhcchhccccCCCCCCCCcccccccCCcccc
Q 027644 173 FGMGLYGLFISNVPPNVAPNVDRALKGSSLFGM 205 (220)
Q Consensus 173 fs~GLYELFISkid~~~~~~~p~wL~i~SLd~l 205 (220)
+++|+|||||||+|.++ ++.+.||.+.|+++|
T Consensus 76 v~~g~YelFVskLd~~~-~~~~~wL~~~d~~~L 107 (169)
T COG2862 76 VSFGGYELFVSKLDIAE-EDKPSWLGIVDLSDL 107 (169)
T ss_pred HHHhhHHHHHhhccccc-ccccchhhcccHHHH
Confidence 99999999999999988 778999999999854
No 5
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=79.15 E-value=14 Score=29.64 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 027644 96 IESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGM 175 (220)
Q Consensus 96 iE~~fEriLf~SRwLvLlpV~~sLlgSllLFi~G~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLLIfs~ 175 (220)
.+..+|+-+.--|.+.-++-.+||+|.+.=.+. ++..+-. ..+.+...+..++-++.+..+.|.++=|+++
T Consensus 47 ~~~~~~~~~~~l~~i~~~aP~lGLlGTv~Gmi~-------~f~~l~~--~~~~~~~~l~~gi~~Al~tT~~GL~vai~~~ 117 (139)
T PF01618_consen 47 EEERLERNLSILRTIASIAPLLGLLGTVIGMIE-------AFQALAE--TGSGDPSQLAGGISVALITTAYGLVVAIPAL 117 (139)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhc--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666667777776543332 1111111 1113456788899999999999999999999
Q ss_pred hcchhccccCC
Q 027644 176 GLYGLFISNVP 186 (220)
Q Consensus 176 GLYELFISkid 186 (220)
-.|..|-++.+
T Consensus 118 ~~~~~l~~~~~ 128 (139)
T PF01618_consen 118 PFYNYLKRRVE 128 (139)
T ss_pred HHHHHHHHHHH
Confidence 88888777764
No 6
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=57.70 E-value=52 Score=27.73 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 027644 95 SIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFG 174 (220)
Q Consensus 95 ~iE~~fEriLf~SRwLvLlpV~~sLlgSllLFi~G~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLLIfs 174 (220)
.+|..+||-+.--..+.-.+=+.||+|.+. |.++.++.+.+ ..+.+...+..++=+++=....|.+.=|.+
T Consensus 46 ~l~~~l~k~L~~L~ti~s~APllGLLGTV~----GmI~~F~~lg~-----~g~~~~~~la~GIs~ALitTa~GL~VAIpa 116 (138)
T TIGR02805 46 QLDIDLNRNLTVISIIGSNAPYIGLLGTVI----GIMVTFYQMGH-----GGGIDPSVIMLGLSLALKATALGLLVAIPS 116 (138)
T ss_pred HHHHHHHcCCHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHh-----cCCCCHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444455555655543 33332222211 112455677788888888888899999999
Q ss_pred hhcchhccccCCC
Q 027644 175 MGLYGLFISNVPP 187 (220)
Q Consensus 175 ~GLYELFISkid~ 187 (220)
+-.|..|.+|.|.
T Consensus 117 li~yn~l~~rv~~ 129 (138)
T TIGR02805 117 LVFYNALLRKVEV 129 (138)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888763
No 7
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=46.41 E-value=1.4e+02 Score=25.84 Aligned_cols=77 Identities=17% Similarity=0.081 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHHHHhhhcchhccc
Q 027644 106 DFRFLALLAVGGSLAGSLLC--FLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFIS 183 (220)
Q Consensus 106 ~SRwLvLlpV~~sLlgSllL--Fi~G~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLLIfs~GLYELFIS 183 (220)
-.|++.+++.+++..=-+.| -+.|.++.+.. +-. ..+.+...+..++=+++=..-.|.+.=|.++-.|..|.+
T Consensus 115 le~~l~~L~ti~~~APllGLLGTV~Gmi~aF~~---ia~--~g~~~~~~lA~GI~eALitTA~GL~VAIPAli~yn~f~~ 189 (211)
T TIGR02797 115 MSRGTGVLATIGATAPFVGLFGTVWGIMNSFIG---ISK--SQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFAR 189 (211)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh--CCCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566556666555432222 23344333332 221 112344567788888888888999999999999999999
Q ss_pred cCCC
Q 027644 184 NVPP 187 (220)
Q Consensus 184 kid~ 187 (220)
++|.
T Consensus 190 ri~~ 193 (211)
T TIGR02797 190 SIAG 193 (211)
T ss_pred HHHH
Confidence 9863
No 8
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=41.74 E-value=2.3e+02 Score=24.43 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 027644 152 KMVLRLVEAIDVYLAGTVMLIFG 174 (220)
Q Consensus 152 ~LIl~vLelIDlfLIA~VLLIfs 174 (220)
-+++-+=|+..+|.++++++|-.
T Consensus 123 ~~~L~laelmGiY~iSt~lLlRs 145 (196)
T PF12430_consen 123 ILVLFLAELMGIYFISTVLLLRS 145 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 57777889999999999999854
No 9
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=41.50 E-value=1.2e+02 Score=28.50 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchhHHHHHHHHHHHHHHHHHHHHHhhhcchhccccC
Q 027644 107 FRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNV 185 (220)
Q Consensus 107 SRwLvLlpV~~sLlgSllLFi~G~vel~~~~~~v~~~~~~~~~~~~LIl~vLelIDlfLIA~VLLIfs~GLYELFISki 185 (220)
-|.++++|....|+.+...++.|++.+++.=...-+...+...-++++.. +++.-...+.-.+..++.=.||..-.+.
T Consensus 179 l~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~~~~~~~~Kl~klm~R-iGiFsvly~vp~~~~i~c~~YE~~~~~~ 256 (328)
T PF01534_consen 179 LRGFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMKHDGTKTSKLEKLMIR-IGIFSVLYLVPALIVIACHFYEYSNRPQ 256 (328)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcccccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 46778999999999998888888887665533222211111111234433 5555555556666777888899876554
No 10
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=40.13 E-value=1.6e+02 Score=28.19 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027644 95 SIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCI 131 (220)
Q Consensus 95 ~iE~~fEriLf~SRwLvLlpV~~sLlgSllLFi~G~v 131 (220)
+-+..+-|+|++.|--++.+....+++++.-...|++
T Consensus 128 qgRDV~ARliygfRiSvLfgL~lT~~SaliGv~~GA~ 164 (341)
T COG4239 128 QGRDVLARLIYGFRISVLFGLSLTLISALIGVLAGAL 164 (341)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998888777777766554444443
No 11
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=38.93 E-value=22 Score=28.40 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=5.1
Q ss_pred HHHHHHHHH
Q 027644 108 RFLALLAVG 116 (220)
Q Consensus 108 RwLvLlpV~ 116 (220)
||++++-++
T Consensus 1 RW~l~~iii 9 (130)
T PF12273_consen 1 RWVLFAIII 9 (130)
T ss_pred CeeeHHHHH
Confidence 788643333
No 12
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=35.79 E-value=26 Score=31.35 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhcchhcccc
Q 027644 164 YLAGTVMLIFGMGLYGLFISN 184 (220)
Q Consensus 164 fLIA~VLLIfs~GLYELFISk 184 (220)
.|||+|+|.+++-+|-+|++.
T Consensus 18 iaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred HHHHHHHHHHHHHhhhheecC
Confidence 579999999999999999954
No 13
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=32.24 E-value=1.6e+02 Score=22.32 Aligned_cols=34 Identities=35% Similarity=0.367 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q 027644 99 NIERLIFDFRFLAL--------------LAVGGSLAGSLLCFLNGCIY 132 (220)
Q Consensus 99 ~fEriLf~SRwLvL--------------lpV~~sLlgSllLFi~G~ve 132 (220)
.+-+++|.+||++. .-=+.|++|+++++++|...
T Consensus 3 ~~gq~lF~~Rf~~QW~~SEk~k~sv~P~~FW~lSl~Gs~lll~Y~i~r 50 (72)
T PF07578_consen 3 FIGQLLFSSRFIVQWIYSEKAKKSVVPVAFWYLSLIGSLLLLIYAIIR 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899998863 23478999999999887653
No 14
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=29.57 E-value=3.2e+02 Score=22.50 Aligned_cols=27 Identities=26% Similarity=0.424 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhcchhccccC
Q 027644 159 EAIDVYLAGTVMLIFGMGLYGLFISNV 185 (220)
Q Consensus 159 elIDlfLIA~VLLIfs~GLYELFISki 185 (220)
.+=..+.+|.+|.|+.+|+.=.+|+.+
T Consensus 113 tag~ly~iGAiL~IIlIG~ii~lIa~I 139 (139)
T PF06195_consen 113 TAGLLYFIGAILTIILIGLIIILIAWI 139 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445678999999999999988887653
No 15
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=29.50 E-value=5e+02 Score=24.65 Aligned_cols=34 Identities=12% Similarity=-0.075 Sum_probs=18.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027644 90 LGFFRSIESNIERLIFDFRFLALLAVGGSLAGSL 123 (220)
Q Consensus 90 ~~~~~~iE~~fEriLf~SRwLvLlpV~~sLlgSl 123 (220)
|...+.++..++++..+..-+..++++..+.++.
T Consensus 81 P~~~~~i~~~l~~~~~~~~~l~~ig~~~ll~ta~ 114 (412)
T PRK04214 81 PQAARSVFDYLNQFREQAGRLTAAGSVALVVTLL 114 (412)
T ss_pred chHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 5555566667777766544444445554444443
No 16
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=25.91 E-value=62 Score=23.39 Aligned_cols=18 Identities=22% Similarity=0.695 Sum_probs=12.3
Q ss_pred HHHhhhcchhccccCCCC
Q 027644 171 LIFGMGLYGLFISNVPPN 188 (220)
Q Consensus 171 LIfs~GLYELFISkid~~ 188 (220)
+|+++--|-+||.|-.++
T Consensus 17 ~lIgfity~mfV~K~s~q 34 (53)
T PF13131_consen 17 FLIGFITYKMFVKKASPQ 34 (53)
T ss_pred HHHHHHHHHhheecCCCc
Confidence 344444499999997654
No 17
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=25.88 E-value=2.5e+02 Score=28.49 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q 027644 152 KMVLRLVEAIDVYLAGTVMLIFGMG 176 (220)
Q Consensus 152 ~LIl~vLelIDlfLIA~VLLIfs~G 176 (220)
.+...+++++-..|-..+++|+++|
T Consensus 270 ~~~a~i~sa~K~Tlsr~LlLIVSlG 294 (518)
T KOG2568|consen 270 TVFASILSAIKKTLSRLLLLIVSLG 294 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4777889999999999999999886
No 18
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=25.76 E-value=1e+02 Score=28.69 Aligned_cols=23 Identities=4% Similarity=0.050 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027644 100 IERLIFDFRFLALLAVGGSLAGS 122 (220)
Q Consensus 100 fEriLf~SRwLvLlpV~~sLlgS 122 (220)
+=+++|+-||++++.++++++++
T Consensus 6 ~l~il~rr~~lil~v~~~~~~~~ 28 (444)
T TIGR03017 6 FLLILKARYWIVLFTLLITVTTT 28 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999998753333333333
No 19
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=25.72 E-value=2.9e+02 Score=24.26 Aligned_cols=10 Identities=10% Similarity=0.086 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 027644 113 LAVGGSLAGS 122 (220)
Q Consensus 113 lpV~~sLlgS 122 (220)
.-+|||++..
T Consensus 161 ~SFiGGIVL~ 170 (186)
T PF05283_consen 161 ASFIGGIVLT 170 (186)
T ss_pred hhhhhHHHHH
Confidence 3445555444
No 20
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=25.41 E-value=60 Score=25.71 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhcchhcc
Q 027644 159 EAIDVYLAGTVMLIFGMGLYGLFI 182 (220)
Q Consensus 159 elIDlfLIA~VLLIfs~GLYELFI 182 (220)
+++|.+|++++..||.+=+|-.+=
T Consensus 2 gl~Da~~~~V~V~IVclliya~YR 25 (92)
T PHA02681 2 GLLDALLTVIVISIVCYIVIMMYR 25 (92)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999888887664
No 21
>PRK09881 D-ala-D-ala transporter subunit; Provisional
Probab=24.99 E-value=5.2e+02 Score=23.42 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027644 98 SNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCI 131 (220)
Q Consensus 98 ~~fEriLf~SRwLvLlpV~~sLlgSllLFi~G~v 131 (220)
..+++++++.|+-+.+++...+++.+.-.+.|+.
T Consensus 84 Dv~~rl~~g~~~sl~ia~~~~~is~iiG~~lG~~ 117 (296)
T PRK09881 84 DLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCL 117 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999998877777777666554554544
No 22
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=24.32 E-value=6.2e+02 Score=24.63 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchh----HHH
Q 027644 97 ESNIERLIFDFRFLALLAV-----------------GGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGK----MVL 155 (220)
Q Consensus 97 E~~fEriLf~SRwLvLlpV-----------------~~sLlgSllLFi~G~vel~~~~~~v~~~~~~~~~~~~----LIl 155 (220)
+..+.+..|.-.++++++. +.+.+|+.+..+...+-++++....-+......++++ ...
T Consensus 104 Ra~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~FiliQlIlLvDFah~wne~w~~~~e~~~s~~w~~~ 183 (429)
T PF03348_consen 104 RAAIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIFILIQLILLVDFAHSWNESWVEKAEEGNSKRWYIA 183 (429)
T ss_pred HHHHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceehhH
Confidence 4556777777666655443 4555566554444444444443332222233333332 344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcch
Q 027644 156 RLVEAIDVYLAGTVMLIFGMGLYG 179 (220)
Q Consensus 156 ~vLelIDlfLIA~VLLIfs~GLYE 179 (220)
-+.--+-.|.+++++.++.+-.|-
T Consensus 184 Li~~T~~~y~~si~~~v~~y~~f~ 207 (429)
T PF03348_consen 184 LIGVTLLFYAASIAGIVLMYVFFT 207 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455556678888888887777664
No 23
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.00 E-value=4.1e+02 Score=21.89 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhccccCC
Q 027644 157 LVEAIDVYLAGTVMLIFGMGLYGLFISNVP 186 (220)
Q Consensus 157 vLelIDlfLIA~VLLIfs~GLYELFISkid 186 (220)
+..++=..++|.-++.|+.|+|-++..+--
T Consensus 37 ~s~~lg~~~lAlg~vL~~~g~~~~~~~~~~ 66 (191)
T PF04156_consen 37 ISFILGIALLALGVVLLSLGLLCLLSKRPV 66 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 334445567777788888999977666653
No 24
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.72 E-value=1.1e+02 Score=21.85 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027644 116 GGSLAGSLLCFLNGCIY 132 (220)
Q Consensus 116 ~~sLlgSllLFi~G~ve 132 (220)
++||+.|.+||+.|.+-
T Consensus 16 igGLi~A~vlfi~Gi~i 32 (50)
T PF02038_consen 16 IGGLIFAGVLFILGILI 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHH
Confidence 57888888888877654
No 25
>PRK15021 microcin C ABC transporter permease; Provisional
Probab=23.50 E-value=4.3e+02 Score=24.93 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027644 97 ESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIY 132 (220)
Q Consensus 97 E~~fEriLf~SRwLvLlpV~~sLlgSllLFi~G~ve 132 (220)
+..++|++++.|.-+.+++.+.+++.++-.+.|++.
T Consensus 130 RDV~srll~G~r~SL~l~l~a~~is~iiGi~lG~ia 165 (341)
T PRK15021 130 GDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQ 165 (341)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999988888877777665555555443
No 26
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=23.18 E-value=2.1e+02 Score=27.29 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcch
Q 027644 153 MVLRLVEAIDVYLAGTVMLIFGMGLYG 179 (220)
Q Consensus 153 LIl~vLelIDlfLIA~VLLIfs~GLYE 179 (220)
+..-++.++-++|...+.+||..+=.+
T Consensus 95 v~~Llv~l~ai~lt~~l~lv~~~~~rK 121 (308)
T PF14800_consen 95 VGWLLVNLAAIFLTMALILVFMRHQRK 121 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688888999999999998866543
No 27
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=23.12 E-value=4.8e+02 Score=23.09 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=33.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhcchhccccCCC
Q 027644 149 HTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPP 187 (220)
Q Consensus 149 ~~~~LIl~vLelIDlfLIA~VLLIfs~GLYELFISkid~ 187 (220)
+...+..++=+++=....|.+.=|.++=.|..|.++++.
T Consensus 160 ~~~~~a~GI~~ALitTa~GL~vAIPAli~yN~f~~ri~~ 198 (227)
T PRK10801 160 TLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNK 198 (227)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888889999999999999999999874
No 28
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=22.57 E-value=4.4e+02 Score=21.64 Aligned_cols=48 Identities=13% Similarity=0.011 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027644 94 RSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYW 141 (220)
Q Consensus 94 ~~iE~~fEriLf~SRwLvLlpV~~sLlgSllLFi~G~vel~~~~~~v~ 141 (220)
++++..||.++|-.-.++.+-++--|++-++=.=+-.++++..+.++.
T Consensus 6 ERVKlfFEwFLF~~AIFiAItIlYILLalL~EvPkYIK~~VrYlVEYl 53 (117)
T PF07234_consen 6 ERVKLFFEWFLFFGAIFIAITILYILLALLFEVPKYIKELVRYLVEYL 53 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567788999888776665444443333332222233344444544443
No 29
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=21.39 E-value=3.8e+02 Score=23.67 Aligned_cols=12 Identities=8% Similarity=0.114 Sum_probs=5.8
Q ss_pred CCcchHHHHHHH
Q 027644 88 SPLGFFRSIESN 99 (220)
Q Consensus 88 ~~~~~~~~iE~~ 99 (220)
.-|++++++-++
T Consensus 6 ~~~~~~~~~~~~ 17 (200)
T PRK10617 6 RKPGLIKRLWKW 17 (200)
T ss_pred CChHHHHHHHHH
Confidence 445555544443
No 30
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=20.83 E-value=2.2e+02 Score=27.69 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhccccCCC
Q 027644 153 MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVPP 187 (220)
Q Consensus 153 LIl~vLelIDlfLIA~VLLIfs~GLYELFISkid~ 187 (220)
....++..-++.|.+.-++-...|+|. +.+++.
T Consensus 271 ~A~~~~~i~~~~l~~l~~~a~i~g~~~--~r~l~~ 303 (441)
T PF03189_consen 271 LAILLVYIFELVLYSLSILAVIIGIYR--MRKLKF 303 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccc
Confidence 333455666777777666667777775 666655
Done!