Query 027644
Match_columns 220
No_of_seqs 130 out of 362
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:13:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8f_C Cytochrome C oxidase po 40.5 21 0.00071 22.7 2.6 23 162-184 11-33 (34)
2 2rrl_A FLIK, flagellar HOOK-le 29.8 1.5E+02 0.0053 24.4 6.9 13 94-106 69-81 (169)
3 2knc_B Integrin beta-3; transm 27.1 1.2E+02 0.004 21.9 5.1 25 114-138 12-36 (79)
4 2jp3_A FXYD domain-containing 22.9 74 0.0025 22.9 3.3 18 116-133 19-36 (67)
5 1vry_A Glycine receptor alpha- 22.3 50 0.0017 24.0 2.3 31 155-185 29-62 (76)
6 2jo1_A Phospholemman; FXYD1, N 21.8 85 0.0029 22.9 3.5 18 116-133 18-35 (72)
7 2k9j_B Integrin beta-3; transm 21.6 1.7E+02 0.0058 18.8 5.3 28 113-140 10-37 (43)
8 2zxe_G FXYD10, phospholemman-l 18.9 79 0.0027 23.2 2.8 17 116-132 21-37 (74)
9 1m56_D Cytochrome C oxidase; m 11.6 3.6E+02 0.012 18.1 4.4 17 96-112 21-37 (51)
10 3kly_A Putative formate transp 11.1 7.5E+02 0.026 21.3 7.5 27 159-185 67-93 (280)
No 1
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=40.46 E-value=21 Score=22.66 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhhcchhcccc
Q 027644 162 DVYLAGTVMLIFGMGLYGLFISN 184 (220)
Q Consensus 162 DlfLIA~VLLIfs~GLYELFISk 184 (220)
-.+++|..++++=+|.|-+|++|
T Consensus 11 ~V~ilg~~I~i~W~~vf~lFl~R 33 (34)
T 3s8f_C 11 VILVLTLTILVFWLGVYAVFFAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHeeeecC
Confidence 45778889999999999999886
No 2
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=29.85 E-value=1.5e+02 Score=24.35 Aligned_cols=13 Identities=0% Similarity=-0.036 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 027644 94 RSIESNIERLIFD 106 (220)
Q Consensus 94 ~~iE~~fEriLf~ 106 (220)
+..+.+-|++.|.
T Consensus 69 ~w~qqL~qqI~~~ 81 (169)
T 2rrl_A 69 EWQQTFSQQVMLF 81 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555665553
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.10 E-value=1.2e+02 Score=21.92 Aligned_cols=25 Identities=20% Similarity=0.095 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027644 114 AVGGSLAGSLLCFLNGCIYIVDAYK 138 (220)
Q Consensus 114 pV~~sLlgSllLFi~G~vel~~~~~ 138 (220)
++++|.+++++|.....+-+|+.+.
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554444433444444443
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.86 E-value=74 Score=22.94 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027644 116 GGSLAGSLLCFLNGCIYI 133 (220)
Q Consensus 116 ~~sLlgSllLFi~G~vel 133 (220)
++||+.+.+||+.|..-+
T Consensus 19 igGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHH
Confidence 578888888888776553
No 5
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=22.35 E-value=50 Score=23.98 Aligned_cols=31 Identities=32% Similarity=0.477 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcch---hccccC
Q 027644 155 LRLVEAIDVYLAGTVMLIFGMGLYG---LFISNV 185 (220)
Q Consensus 155 l~vLelIDlfLIA~VLLIfs~GLYE---LFISki 185 (220)
+.-+++||.++.+-.+++|+-=+-- +|+++.
T Consensus 29 VSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~ 62 (76)
T 1vry_A 29 VSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRK 62 (76)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999888743322 455554
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.83 E-value=85 Score=22.92 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027644 116 GGSLAGSLLCFLNGCIYI 133 (220)
Q Consensus 116 ~~sLlgSllLFi~G~vel 133 (220)
++||+.+.+||+.|.+-+
T Consensus 18 iGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 578888888888876653
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=21.63 E-value=1.7e+02 Score=18.83 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027644 113 LAVGGSLAGSLLCFLNGCIYIVDAYKVY 140 (220)
Q Consensus 113 lpV~~sLlgSllLFi~G~vel~~~~~~v 140 (220)
.++++|.++++++......-+|+.+..+
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~~~~i 37 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKLLITI 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 4556666666665555555556655433
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=18.92 E-value=79 Score=23.21 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027644 116 GGSLAGSLLCFLNGCIY 132 (220)
Q Consensus 116 ~~sLlgSllLFi~G~ve 132 (220)
++||+.+.+||+.|..-
T Consensus 21 igGLifA~vLfi~GI~i 37 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIII 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHH
Confidence 57888888888877654
No 9
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=11.64 E-value=3.6e+02 Score=18.06 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027644 96 IESNIERLIFDFRFLAL 112 (220)
Q Consensus 96 iE~~fEriLf~SRwLvL 112 (220)
=|+-++.++.-+.|..+
T Consensus 21 he~Ty~gFi~~~k~gt~ 37 (51)
T 1m56_D 21 QEKTFAGFVRMVTWAAV 37 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47889999998999874
No 10
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=11.06 E-value=7.5e+02 Score=21.32 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhcchhccccC
Q 027644 159 EAIDVYLAGTVMLIFGMGLYGLFISNV 185 (220)
Q Consensus 159 elIDlfLIA~VLLIfs~GLYELFISki 185 (220)
.++--..-..-|+++.+++.|||=++.
T Consensus 67 ~ll~g~~F~vGL~lVvl~g~ELFTgn~ 93 (280)
T 3kly_A 67 KLLGGLAFSLGLILVVITGGELFTSSV 93 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCTTTTC
T ss_pred HHHHHHHHHHHHHHHHHccccccccch
Confidence 333344556667778889999999985
Done!