BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027645
MVSLQAPLSPNNGKANKEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQLE
TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLELNLPCDSQ
RKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQQEMVATACM
RCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFKQTFSLLC

High Scoring Gene Products

Symbol, full name Information P value
AT1G78170 protein from Arabidopsis thaliana 3.7e-32
AT1G22250 protein from Arabidopsis thaliana 2.9e-23
AT4G08910 protein from Arabidopsis thaliana 8.9e-18
AT1G28070 protein from Arabidopsis thaliana 6.2e-05
AT5G06270 protein from Arabidopsis thaliana 0.00022

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027645
        (220 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2194709 - symbol:AT1G78170 "AT1G78170" species...   352  3.7e-32   1
TAIR|locus:2015026 - symbol:AT1G22250 "AT1G22250" species...   268  2.9e-23   1
TAIR|locus:2138723 - symbol:AT4G08910 "AT4G08910" species...   183  8.9e-18   2
TAIR|locus:2010534 - symbol:AT1G28070 species:3702 "Arabi...    84  6.2e-05   2
TAIR|locus:2164235 - symbol:AT5G06270 "AT5G06270" species...    94  0.00022   1


>TAIR|locus:2194709 [details] [associations]
            symbol:AT1G78170 "AT1G78170" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:BT003949
            EMBL:BT005045 IPI:IPI00546380 RefSeq:NP_177941.2 UniGene:At.34328
            DNASU:844153 EnsemblPlants:AT1G78170.1 GeneID:844153
            KEGG:ath:AT1G78170 TAIR:At1g78170 eggNOG:NOG260913
            HOGENOM:HOG000239816 InParanoid:Q84JP5 OMA:SITFDFE PhylomeDB:Q84JP5
            ProtClustDB:CLSN2680125 ArrayExpress:Q84JP5 Genevestigator:Q84JP5
            Uniprot:Q84JP5
        Length = 221

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 91/217 (41%), Positives = 115/217 (52%)

Query:    17 KEFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFDIELQLETPLPLEWERCLDIQSG 76
             +EF N  KK K E+  Q + T      K  + +S  FD EL L TPLP +W+        
Sbjct:    21 EEFHNSFKKSKQED--QSQSTLFNERPKSESMRSITFDFELHLHTPLPSDWQ-------- 70

Query:    77 EIHFYNTRTHKKTSGDPRGSPEPPNRAGD-HMSLDLELNL-----PCDSQRKNQGSNNII 130
                   T+ + +TS + R  P+ P   G   MSLDLELNL     P  +  K   S++I 
Sbjct:    71 ------TKGYSRTSDEHRAYPKDPVIFGQPKMSLDLELNLSPSGSPSRTTTKKYESSSIH 124

Query:   131 SKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEGDHDDQ-----QEMVATACMRCHML 185
             ++  S+S  +       K   G  LSR PSWLAFEG  D+      QEMV T CM+CHML
Sbjct:   125 NETVSSSKIKVLTNTSKKSIIGTGLSRSPSWLAFEGGDDNDVDHKGQEMVTTVCMKCHML 184

Query:   186 VMLCKSSPTCPNCKFLHPPDQSPPKLFKQT--FSLLC 220
             VMLC S+P CPNCKF+HP D S  KLFK +    LLC
Sbjct:   185 VMLCTSTPVCPNCKFMHPHDHSSTKLFKPSNLLRLLC 221


>TAIR|locus:2015026 [details] [associations]
            symbol:AT1G22250 "AT1G22250" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC073942
            UniGene:At.28031 UniGene:At.41612 HOGENOM:HOG000239816
            ProtClustDB:CLSN2680125 EMBL:AK117944 IPI:IPI00526771 PIR:C86355
            RefSeq:NP_173644.2 EnsemblPlants:AT1G22250.1 GeneID:838830
            KEGG:ath:AT1G22250 TAIR:At1g22250 eggNOG:NOG260255
            InParanoid:Q9LM21 OMA:TIMEKDE PhylomeDB:Q9LM21
            Genevestigator:Q9LM21 Uniprot:Q9LM21
        Length = 200

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 59/122 (48%), Positives = 72/122 (59%)

Query:   105 DHMSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGD-HLSRCPSWLA 163
             DH + DL+LNL   S   +     I+ K   +      +    K +SGD  LSR PSWLA
Sbjct:    80 DHRT-DLDLNLNLYSSSSSSVKKTIMEKDECSKGGTVIISPSKKVRSGDIGLSRSPSWLA 138

Query:   164 FEGDHDD---QQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPPDQSPPKLFK--QTFSL 218
             FEGD DD   +QEM+ T CM+CHMLVMLCKS+  CPNCKF+H  D S  K F+    F L
Sbjct:   139 FEGDDDDNQKKQEMITTVCMKCHMLVMLCKSTLVCPNCKFMHHDDHSSTKQFQTLNLFKL 198

Query:   219 LC 220
             LC
Sbjct:   199 LC 200


>TAIR|locus:2138723 [details] [associations]
            symbol:AT4G08910 "AT4G08910" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:BT030085
            IPI:IPI00525781 RefSeq:NP_192630.2 UniGene:At.50328 IntAct:A2RVU4
            EnsemblPlants:AT4G08910.1 GeneID:826469 KEGG:ath:AT4G08910
            TAIR:At4g08910 eggNOG:NOG239110 HOGENOM:HOG000236381
            InParanoid:A2RVU4 OMA:CKASPAC PhylomeDB:A2RVU4
            ProtClustDB:CLSN2918574 Genevestigator:A2RVU4 Uniprot:A2RVU4
        Length = 212

 Score = 183 (69.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 52/127 (40%), Positives = 65/127 (51%)

Query:   106 HMSLDLELNLPCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKS--GDHLSRCPSWLA 163
             HMSLDLELNL       N   ++ +S  N            ++K S  G    +  S +A
Sbjct:    86 HMSLDLELNLSPSLIDLNH--HHDLSNYNKGYEEDERKKKMMEKGSVLGLETKKSMSRVA 143

Query:   164 FEGDHD-----------DQQEMVATACMRCHMLVMLCKSSPTCPNCKFLHPP-DQSPPKL 211
             F+ D D            ++EMVA  CM+CHMLVMLCK+SP CPNCKF+H P D S   L
Sbjct:   144 FDLDDDCCDRGDGVGGRSEEEMVARVCMKCHMLVMLCKASPACPNCKFMHSPEDTSLSLL 203

Query:   212 FKQTFSL 218
             F    SL
Sbjct:   204 FTPKPSL 210

 Score = 47 (21.6 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query:    18 EFDNLSKKRKLEEIIQGEGTFDKRSSKGVTTKSSIFD 54
             E +  S+KRK++E +  +  F KRS +      S FD
Sbjct:    26 EAEEGSRKRKVQEFLANDEIF-KRSDESQNLIVSPFD 61


>TAIR|locus:2010534 [details] [associations]
            symbol:AT1G28070 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0006661 "phosphatidylinositol
            biosynthetic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC069471 EMBL:BT011669 EMBL:AK220610
            IPI:IPI00521140 PIR:D86406 RefSeq:NP_174128.1 UniGene:At.49925
            ProteinModelPortal:Q9C7E6 SMR:Q9C7E6 EnsemblPlants:AT1G28070.1
            GeneID:839700 KEGG:ath:AT1G28070 TAIR:At1g28070 eggNOG:NOG253259
            HOGENOM:HOG000029153 InParanoid:Q9C7E6 OMA:MADITEY PhylomeDB:Q9C7E6
            ProtClustDB:CLSN2679365 Genevestigator:Q9C7E6 Uniprot:Q9C7E6
        Length = 176

 Score = 84 (34.6 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
 Identities = 27/83 (32%), Positives = 40/83 (48%)

Query:    28 LEEIIQGEGTFDKRSSKGVTTKSS-----IFD--IELQLETPLPLEWERCLDIQSGEIHF 80
             LE  +Q     D+RSS G     S     I D  +EL     +P   E+CLD+++GEI++
Sbjct:     8 LERSMQNCSLIDRRSSMGDGFGMSDEHIPISDRFLELSSHFSVPSHLEQCLDLKTGEIYY 67

Query:    81 YNTRTHKKTSGDPRGSPEPPNRA 103
              +  +  +   DPR S    N A
Sbjct:    68 RSWNSGMRVKEDPRKSMSRGNYA 90

 Score = 65 (27.9 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
 Identities = 14/46 (30%), Positives = 20/46 (43%)

Query:   159 PSWLAFEGDHDDQQEMVATACMRCHMLVMLCKSSPTCPNC--KFLH 202
             PS   +  +  D+  +V   C  C M  M+ K    CP C  + LH
Sbjct:   122 PSSRKYHKEEQDEDVLVVAGCKACLMYFMVPKLFKDCPKCATQLLH 167


>TAIR|locus:2164235 [details] [associations]
            symbol:AT5G06270 "AT5G06270" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB006700
            EMBL:AY084326 EMBL:BT003828 EMBL:BT005129 IPI:IPI00516753
            RefSeq:NP_196245.1 UniGene:At.32874 IntAct:Q9FNI1
            EnsemblPlants:AT5G06270.1 GeneID:830515 KEGG:ath:AT5G06270
            TAIR:At5g06270 eggNOG:NOG314130 HOGENOM:HOG000239136
            InParanoid:Q9FNI1 OMA:LDFLHEN PhylomeDB:Q9FNI1
            ProtClustDB:CLSN2686846 ArrayExpress:Q9FNI1 Genevestigator:Q9FNI1
            Uniprot:Q9FNI1
        Length = 122

 Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
 Identities = 29/93 (31%), Positives = 42/93 (45%)

Query:   109 LDLELNL--PCDSQRKNQGSNNIISKPNSASPPRHHLGDHLKKKSGDHLSRCPSWLAFEG 166
             L+L+LNL  P  SQR+   S +  +  +  SPP   +   + +         PS + +  
Sbjct:     8 LELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE-------PS-VRYST 59

Query:   167 DHDDQQEMVATACMRCHMLVMLCKSSPTCPNCK 199
                +   MV   C RC M VML +  P CP CK
Sbjct:    60 S-PETTSMVLVGCPRCLMYVMLSEDDPKCPKCK 91


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.43    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.74u 0.12s 23.86t   Elapsed:  00:00:01
  Total cpu time:  23.74u 0.12s 23.86t   Elapsed:  00:00:01
  Start:  Sat May 11 02:25:48 2013   End:  Sat May 11 02:25:49 2013

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