BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027645
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 21 NLSKKRKLEEI-IQGEGTFDKRSSK-GVTTKSSIFDIELQLETPLPLEWERCLDI--QSG 76
+++ ++L E+ IQG + K K G+ TK+ + I LE + EW + + + QS
Sbjct: 11 SIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLE-KISEEWSKGVFVVKQSD 69
Query: 77 E-IHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLEL 113
E IH N R K+ GD G D + DL+L
Sbjct: 70 EDIHTANERRLKELIGDIAGKLNTGRSRNDQVVTDLKL 107
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 21 NLSKKRKLEEI-IQGEGTFDKRSSK-GVTTKSSIFDIELQLETPLPLEWERCLDI--QSG 76
+++ ++L E+ IQG + K K G+ TK+ + I LE + EW + + + QS
Sbjct: 29 SIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLE-KISEEWSKGVFVVKQSD 87
Query: 77 E-IHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLEL 113
E IH N R K+ GD G D + DL+L
Sbjct: 88 EDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKL 125
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 21 NLSKKRKLEEI-IQGEGTFDKRSSK-GVTTKSSIFDIELQLETPLPLEWERCLDI--QSG 76
+++ ++L E+ IQG + K K G+ TK+ + I LE + EW + + + QS
Sbjct: 29 SIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLE-KISEEWSKGVFVVKQSD 87
Query: 77 E-IHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLEL 113
E IH N R K+ GD G D + DL+L
Sbjct: 88 EDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKL 125
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 21 NLSKKRKLEEI-IQGEGTFDKRSSK-GVTTKSSIFDIELQLETPLPLEWERCLDI--QSG 76
+++ ++L E+ IQG + K K G+ TK+ + I LE + EW + + + QS
Sbjct: 29 SIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLE-KISEEWSKGVFVVKQSD 87
Query: 77 E-IHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLEL 113
E IH N R K+ GD G D + DL+L
Sbjct: 88 EDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKL 125
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 21 NLSKKRKLEEI-IQGEGTFDKRSSK-GVTTKSSIFDIELQLETPLPLEWERCLDI--QSG 76
+++ ++L E+ IQG + K K G+ TK+ + I LE + EW + + + QS
Sbjct: 29 SIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLE-KISEEWSKGVFVVKQSD 87
Query: 77 E-IHFYNTRTHKKTSGDPRGSPEPPNRAGDHMSLDLEL 113
E IH N R K+ GD G D + DL+L
Sbjct: 88 EDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKL 125
>pdb|1YMZ|A Chain A, Cc45, An Artificial Ww Domain Designed Using Statistical
Coupling Analysis
Length = 43
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDP 93
PLP WER D++ G+++++N RT T P
Sbjct: 8 PLPPGWERRTDVE-GKVYYFNVRTLTTTWERP 38
>pdb|2LTV|A Chain A, Yap Ww2 In Complex With A Smad7 Derived Peptide
Length = 36
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP 97
PLP WE+ + Q GEI++ N + + DPR P
Sbjct: 2 PLPDGWEQAM-TQDGEIYYINHKNKTTSWLDPRLDP 36
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAG 104
E LP WE+ + SG ++++N T+ + P G+ + G
Sbjct: 4 EEKLPPGWEKRMSRSSGRVYYFNHITNASQAERPSGNSSSGGKNG 48
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAG 104
E LP WE+ + SG ++++N T+ P G+ + G
Sbjct: 7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNG 51
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAG 104
E LP WE+ + SG ++++N T+ P G+ + G
Sbjct: 4 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNG 48
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAG 104
E LP WE+ + SG ++++N T+ P G+ + G
Sbjct: 8 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNG 52
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSPEPPNRAG 104
E LP WE+ + SG ++++N T+ P G+ + G
Sbjct: 8 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNG 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,286,761
Number of Sequences: 62578
Number of extensions: 297712
Number of successful extensions: 468
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 23
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)