Query 027645
Match_columns 220
No_of_seqs 140 out of 156
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 22:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2law_A Yorkie homolog; YAP, SM 99.4 1.8E-13 6.3E-18 88.7 3.5 35 60-95 4-38 (38)
2 1wmv_A WWOX, WW domain contain 99.3 6.9E-13 2.4E-17 92.5 4.6 43 46-96 2-44 (54)
3 2zaj_A Membrane-associated gua 99.3 8.4E-13 2.9E-17 90.7 4.6 42 55-97 6-47 (49)
4 1i5h_W Rnedd4, ubiquitin ligas 99.3 9.8E-13 3.3E-17 90.3 4.1 40 56-96 5-44 (50)
5 2ysg_A Syntaxin-binding protei 99.3 1.3E-12 4.5E-17 85.5 4.2 35 60-95 5-39 (40)
6 2ysf_A E3 ubiquitin-protein li 99.3 1.1E-12 3.9E-17 85.9 3.7 35 60-95 5-39 (40)
7 2l4j_A YES-associated protein 99.3 1.3E-12 4.4E-17 88.3 4.1 37 59-96 8-44 (46)
8 1wr3_A Ubiquitin-protein ligas 99.3 1.3E-12 4.4E-17 83.1 3.6 34 61-95 3-36 (36)
9 2djy_A SMAD ubiquitination reg 99.3 1.6E-12 5.5E-17 86.3 4.0 35 61-96 6-40 (42)
10 1wr7_A NEDD4-2; all-beta, liga 99.3 1E-12 3.5E-17 86.3 2.8 35 60-95 6-40 (41)
11 1wr4_A Ubiquitin-protein ligas 99.3 1.9E-12 6.5E-17 81.8 3.6 33 61-94 3-35 (36)
12 2kyk_A E3 ubiquitin-protein li 99.3 2.4E-12 8.3E-17 83.4 3.9 34 61-95 5-38 (39)
13 2ez5_W Dnedd4, E3 ubiquitin-pr 99.3 2.1E-12 7.3E-17 87.1 3.6 36 60-96 8-43 (46)
14 2jmf_A E3 ubiquitin-protein li 99.3 2.8E-12 9.6E-17 89.2 4.3 39 57-96 13-51 (53)
15 1e0m_A Wwprototype; SH3 protot 99.3 2.5E-12 8.6E-17 81.8 3.7 35 61-96 2-36 (37)
16 2kpz_A E3 ubiquitin-protein li 99.3 2.5E-12 8.5E-17 87.6 3.6 35 61-96 11-45 (49)
17 2dmv_A Itchy homolog E3 ubiqui 99.2 5E-12 1.7E-16 83.8 4.3 35 61-96 6-40 (43)
18 2ysb_A Salvador homolog 1 prot 99.2 6.5E-12 2.2E-16 86.0 4.5 36 61-97 10-45 (49)
19 2ysd_A Membrane-associated gua 99.2 6.6E-12 2.3E-16 88.6 4.5 44 53-97 5-48 (57)
20 2yse_A Membrane-associated gua 99.2 5.2E-12 1.8E-16 90.2 2.7 42 54-96 5-46 (60)
21 2ysh_A GAS-7, growth-arrest-sp 99.2 1.3E-11 4.4E-16 80.1 3.8 35 60-95 5-39 (40)
22 2dwv_A Salvador homolog 1 prot 99.2 2.2E-11 7.5E-16 83.4 4.2 36 60-96 11-46 (49)
23 1ymz_A CC45; artificial protei 99.2 2.1E-11 7.3E-16 80.3 4.0 35 61-96 7-41 (43)
24 2jv4_A Peptidyl-prolyl CIS/tra 99.1 8E-11 2.7E-15 82.1 3.8 37 60-96 5-41 (54)
25 1jmq_A YAP65, 65 kDa YES-assoc 99.0 8.8E-11 3E-15 78.3 3.1 40 56-96 2-41 (46)
26 2ho2_A Fe65 protein, amyloid b 99.0 1.1E-10 3.9E-15 76.4 3.5 34 61-96 2-35 (38)
27 2ysc_A Amyloid beta A4 precurs 99.0 3.8E-10 1.3E-14 74.2 3.8 33 60-94 6-38 (39)
28 1tk7_A CG4244-PB; WW domain, n 98.9 3.3E-10 1.1E-14 84.6 3.4 39 57-96 7-45 (88)
29 3l4h_A E3 ubiquitin-protein li 98.9 9.5E-10 3.3E-14 86.9 4.4 39 58-97 68-106 (109)
30 1tk7_A CG4244-PB; WW domain, n 98.9 9.5E-10 3.2E-14 82.1 3.5 37 58-95 52-88 (88)
31 2kxq_A E3 ubiquitin-protein li 98.9 1.4E-09 4.7E-14 81.5 4.4 36 60-96 53-88 (90)
32 2jx8_A Hpcif1, phosphorylated 98.9 7E-10 2.4E-14 76.8 2.0 36 61-96 9-44 (52)
33 2kxq_A E3 ubiquitin-protein li 98.8 1.9E-09 6.6E-14 80.7 4.0 36 60-96 7-42 (90)
34 2e45_A Fe65 protein, amyloid b 98.8 2.5E-09 8.5E-14 75.8 3.9 39 56-96 13-51 (55)
35 3tc5_A Peptidyl-prolyl CIS-tra 98.7 5.9E-09 2E-13 85.7 3.3 37 61-97 8-44 (166)
36 2l5f_A PRE-mRNA-processing fac 98.5 3.3E-08 1.1E-12 74.3 2.9 36 60-96 9-44 (92)
37 1o6w_A PRP40, PRE-mRNA process 98.5 2.6E-08 8.8E-13 71.5 2.2 35 61-96 39-73 (75)
38 2ysi_A Transcription elongatio 98.5 1E-07 3.4E-12 62.6 3.8 34 61-95 6-39 (40)
39 1e0n_A Hypothetical protein; Y 98.5 8.3E-08 2.8E-12 58.6 2.8 27 65-93 1-27 (27)
40 3olm_A E3 ubiquitin-protein li 98.4 8.9E-08 3E-12 88.9 2.8 38 59-97 5-42 (429)
41 1ywi_A Formin-binding protein 98.4 1.3E-07 4.6E-12 62.2 2.5 33 61-94 8-40 (41)
42 1eg3_A Dystrophin; EF-hand lik 98.4 9.4E-08 3.2E-12 84.2 2.0 35 60-95 9-43 (261)
43 1e0l_A Formin binding protein; 98.3 3.2E-07 1.1E-11 59.0 3.5 33 62-95 3-35 (37)
44 2jxw_A WW domain-binding prote 98.3 3.8E-07 1.3E-11 66.0 3.6 34 61-95 42-75 (75)
45 1o6w_A PRP40, PRE-mRNA process 98.2 5.6E-07 1.9E-11 64.5 2.2 31 65-96 2-32 (75)
46 2l5f_A PRE-mRNA-processing fac 98.1 6.5E-07 2.2E-11 67.2 1.8 34 62-96 52-85 (92)
47 2jxw_A WW domain-binding prote 98.1 1.6E-06 5.6E-11 62.6 3.1 31 65-96 5-35 (75)
48 1yw5_A Peptidyl prolyl CIS/tra 97.6 4.9E-05 1.7E-09 62.2 4.0 35 61-95 6-40 (177)
49 2dk1_A WW domain-binding prote 97.3 0.0002 6.7E-09 49.2 3.9 30 66-96 8-37 (50)
50 2dk7_A Transcription elongatio 95.6 0.0086 2.9E-07 44.4 3.3 34 62-96 16-50 (73)
51 2ky8_A Methyl-CPG-binding doma 95.3 0.0061 2.1E-07 44.5 1.6 27 61-88 11-44 (72)
52 3c2i_A Methyl-CPG-binding prot 91.9 0.11 3.8E-06 40.1 3.2 44 45-89 4-56 (97)
53 1ub1_A MECP2, attachment regio 90.5 0.27 9.1E-06 40.0 4.3 45 44-89 17-70 (133)
54 1ryq_A DNA-directed RNA polyme 82.7 0.52 1.8E-05 34.4 1.7 21 177-201 12-32 (69)
55 3p8b_A DNA-directed RNA polyme 82.6 0.55 1.9E-05 35.3 1.8 27 172-202 19-45 (81)
56 3vxv_A Methyl-CPG-binding doma 79.1 1.3 4.4E-05 31.9 2.7 25 60-84 3-34 (69)
57 3l4h_A E3 ubiquitin-protein li 78.6 0.076 2.6E-06 41.8 -4.2 25 61-86 44-68 (109)
58 1d9n_A Methyl-CPG-binding prot 77.0 1.6 5.6E-05 31.9 2.8 28 61-89 9-43 (75)
59 3le4_A Microprocessor complex 76.9 2.3 7.9E-05 31.8 3.6 42 54-96 20-61 (79)
60 2apo_B Ribosome biogenesis pro 68.1 3.2 0.00011 29.4 2.5 31 174-208 4-38 (60)
61 3lpe_B DNA-directed RNA polyme 67.8 1.6 5.5E-05 30.7 0.9 21 177-201 2-22 (59)
62 2aus_D NOP10, ribosome biogene 63.5 4.1 0.00014 28.9 2.3 31 174-208 3-37 (60)
63 1gh9_A 8.3 kDa protein (gene M 61.9 1.8 6.1E-05 31.4 0.2 28 175-204 3-32 (71)
64 1twf_L ABC10-alpha, DNA-direct 45.5 11 0.00039 27.0 2.2 29 172-200 24-53 (70)
65 2kdx_A HYPA, hydrogenase/ureas 43.0 13 0.00043 28.2 2.2 30 173-202 70-100 (119)
66 1lko_A Rubrerythrin all-iron(I 38.7 12 0.00043 30.5 1.7 28 172-200 151-179 (191)
67 2gmg_A Hypothetical protein PF 34.4 16 0.00055 28.4 1.6 29 173-202 64-94 (105)
68 3a43_A HYPD, hydrogenase nicke 33.6 18 0.0006 28.5 1.8 30 173-202 67-117 (139)
69 1weo_A Cellulose synthase, cat 29.6 6 0.0002 30.4 -1.5 24 178-202 45-68 (93)
70 1v54_F VI, cytochrome C oxidas 28.5 30 0.001 26.3 2.2 25 175-200 56-87 (98)
71 1yuz_A Nigerythrin; rubrythrin 27.0 33 0.0011 28.5 2.4 27 172-200 167-194 (202)
72 2k2d_A Ring finger and CHY zin 23.3 81 0.0028 22.8 3.6 32 172-203 33-66 (79)
73 3j20_Y 30S ribosomal protein S 21.9 23 0.00077 23.7 0.4 28 175-202 18-47 (50)
74 2ct7_A Ring finger protein 31; 20.1 35 0.0012 24.3 1.1 22 178-199 27-50 (86)
No 1
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=99.38 E-value=1.8e-13 Score=88.68 Aligned_cols=35 Identities=40% Similarity=0.695 Sum_probs=32.2
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
..+||.|||+++| .+|++||+|+.|++++|+|||.
T Consensus 4 ~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttW~~Prl 38 (38)
T 2law_A 4 EGPLPDGWEQAMT-QDGEIYYINHKNKTTSWLDPRL 38 (38)
T ss_dssp -CCCSSSCCEEEE-TTTEEEEEETTTTEEESSCTTC
T ss_pred cCCCCCCcEEEEC-CCCCEEEEECCCCCEeCCCCCC
Confidence 3689999999999 7899999999999999999984
No 2
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=99.34 E-value=6.9e-13 Score=92.50 Aligned_cols=43 Identities=26% Similarity=0.504 Sum_probs=39.0
Q ss_pred cCCcccccccccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 46 VTTKSSIFDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 46 ~~krk~i~~iEL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.++++.+. .+||.|||++.| .+|++||+||.|++++|+|||..
T Consensus 2 ~g~~~~~~-------~~LP~GWe~~~~-~~G~~Yyinh~tk~TtwedPr~~ 44 (54)
T 1wmv_A 2 SAKRKRVA-------GDLPYGWEQETD-ENGQVFFVDHINKRTTYLDPRLA 44 (54)
T ss_dssp CCTTCCCS-------SCSCTTEEEEEC-TTSCEEEEESSSCCEESSCTTSS
T ss_pred CCcccCcC-------CCCCcCcEEEEC-CCCCEEEEeCCCCCEeecCCCCc
Confidence 46777777 799999999999 58999999999999999999986
No 3
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=99.33 E-value=8.4e-13 Score=90.66 Aligned_cols=42 Identities=26% Similarity=0.405 Sum_probs=37.7
Q ss_pred cccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645 55 IELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP 97 (220)
Q Consensus 55 iEL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~ 97 (220)
-+++.+.+||.|||++.| .+|++||+||.|++++|+|||...
T Consensus 6 ~~~~~~~~LP~GWe~~~d-~~Gr~YYvnh~t~~T~We~P~~~~ 47 (49)
T 2zaj_A 6 SGLDSELELPAGWEKIED-PVYGIYYVDHINRKTQYENPSGPS 47 (49)
T ss_dssp CCCCCSSCCCTTEEEEEE-TTTEEEEEETTTTEEESSCCCSSC
T ss_pred cccCCCCCCCcCceEEEc-CCCCEEEEeCCCCCEecCCCCCCC
Confidence 456777999999999999 589999999999999999999863
No 4
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=99.32 E-value=9.8e-13 Score=90.25 Aligned_cols=40 Identities=30% Similarity=0.485 Sum_probs=36.0
Q ss_pred ccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 56 ELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 56 EL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
+.+-..+||.|||+++| .+|++||+|+.|++++|+|||..
T Consensus 5 ~~~~~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 5 DSNDLGPLPPGWEERTH-TDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp SSSCCSSCSTTEEEEEC-TTSCEEEEETTTTEEESSCTTTS
T ss_pred CcccCCCCCcCcEEEEc-CCCCEEEEECCCCCEEeeCCCCC
Confidence 34455899999999999 78999999999999999999986
No 5
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.31 E-value=1.3e-12 Score=85.47 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=32.8
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
+.+||.|||++.| .+|++||+|+.|++++|+|||.
T Consensus 5 ~~~LP~gWe~~~~-~~Gr~Yy~nh~t~~ttW~~P~~ 39 (40)
T 2ysg_A 5 SSGLPYGWEEAYT-ADGIKYFINHVTQTTSWIHPVM 39 (40)
T ss_dssp SSCCCTTEEEEEC-SSSCEEEEESSSCCEECCCCCC
T ss_pred cCCCCCCcEEEEc-CCCCEEEEECCCCcCcCCCCCC
Confidence 3689999999999 7899999999999999999985
No 6
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.31 E-value=1.1e-12 Score=85.89 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=32.8
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
..+||.|||++.| .+|++||+|+.|++++|+|||.
T Consensus 5 ~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Pr~ 39 (40)
T 2ysf_A 5 SSGLPEGWEMRFT-VDGIPYFVDHNRRTTTYIDPRT 39 (40)
T ss_dssp CCCCCSSEEEEEC-TTCCEEEEETTTCCEESSCTTT
T ss_pred cCCCCcCcEEEEc-CCCCEEEEECCCCcEecCCCCC
Confidence 3789999999999 7899999999999999999985
No 7
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=99.30 E-value=1.3e-12 Score=88.27 Aligned_cols=37 Identities=32% Similarity=0.600 Sum_probs=34.2
Q ss_pred cCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 59 LETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 59 l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
...+||.|||+++| .+|++||+|+.|++++|+|||..
T Consensus 8 ~~~~LP~gWe~~~~-~~G~~Yyinh~t~~TtWe~Pr~~ 44 (46)
T 2l4j_A 8 ASGPLPEGWEQAIT-PEGEIYYINHKNKTTSWLDPRLE 44 (46)
T ss_dssp TTSCCCTTCEEEEC-TTSCEEEEETTTTEEECSCCSSC
T ss_pred cCCCCCcCceeEEC-CCCCEEEEECCCCCEeCCCCCcC
Confidence 34789999999999 78999999999999999999975
No 8
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=99.30 E-value=1.3e-12 Score=83.14 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=31.8
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
.+||.|||++.| .+|++||+|+.|++++|++|+.
T Consensus 3 ~~LP~GWe~~~d-~~G~~Yy~n~~t~~t~We~P~l 36 (36)
T 1wr3_A 3 PPLPPGWEEKVD-NLGRTYYVNHNNRSTQWHRPSL 36 (36)
T ss_dssp SCSCTTEEEEEC-SSSCEEEEETTTCCEESSCSCC
T ss_pred CCCCCCCEEEEC-CCCCEEEEECCCCCEeeeCcCC
Confidence 689999999999 5899999999999999999973
No 9
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=99.29 E-value=1.6e-12 Score=86.31 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=33.3
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.+||.|||++.| .+|++||+|+.|++++|+|||..
T Consensus 6 ~~LP~GWe~~~~-~~G~~Yy~nh~t~~ttW~~Pr~~ 40 (42)
T 2djy_A 6 GPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRLS 40 (42)
T ss_dssp SCCCSSEEEEEC-SSSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCcCcEEEEC-CCCCEEEEECCCCCEeCCCCCCC
Confidence 689999999999 78999999999999999999986
No 10
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=99.29 E-value=1e-12 Score=86.27 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=32.6
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
+.+||.|||++.| .+|++||+|+.|++++|+|||.
T Consensus 6 ~~~LP~gWe~~~~-~~G~~Yy~n~~t~~t~We~Pr~ 40 (41)
T 1wr7_A 6 QSFLPPGWEMRIA-PNGRPFFIDHNTKTTTWEDPRL 40 (41)
T ss_dssp CCSSCTTEEEEEC-TTSCEEEEETTTTEEESSCGGG
T ss_pred cCCCCCCcEEEEc-CCCCEEEEECCCCCeecCCCCC
Confidence 4789999999999 5899999999999999999985
No 11
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=99.28 E-value=1.9e-12 Score=81.81 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=31.3
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR 94 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR 94 (220)
.+||.|||++.|. +|++||+|+.|++++|++|+
T Consensus 3 ~~LP~gWe~~~d~-~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 3 PGLPSGWEERKDA-KGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TTCCTTEEEEECS-SSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCCEEEECC-CCCEEEEECCCCCEeCcCCC
Confidence 6899999999995 89999999999999999997
No 12
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=99.27 E-value=2.4e-12 Score=83.44 Aligned_cols=34 Identities=35% Similarity=0.557 Sum_probs=32.1
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
.+||.|||++.| .+|++||+|+.|++++|++|+.
T Consensus 5 ~~LP~gWe~~~d-~~G~~YY~n~~t~~t~We~P~~ 38 (39)
T 2kyk_A 5 GPLPPGWERRVD-NMGRIYYVDHFTRTTTWQRPTL 38 (39)
T ss_dssp CCCCSSCEEEEC-TTSCEEEECSSSCCEECCCCCC
T ss_pred CCCCCCcEEEEc-CCCCEEEEECCCCCEeccCCCC
Confidence 689999999999 5999999999999999999985
No 13
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=99.27 E-value=2.1e-12 Score=87.11 Aligned_cols=36 Identities=31% Similarity=0.599 Sum_probs=33.6
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
+.+||.|||+++| .+|++||+|+.|++++|+|||..
T Consensus 8 ~~~LP~gWe~~~~-~~Gr~Yyinh~t~~TtW~~Pr~~ 43 (46)
T 2ez5_W 8 EEPLPPRWSMQVA-PNGRTFFIDHASRRTTWIDPRNG 43 (46)
T ss_dssp SCCCCTTEEEEEC-TTSSEEEEETTTTEEESBCTTTC
T ss_pred CCCCCcCcEEEEc-CCCCEEEEECCCCCEeccCCCCC
Confidence 4789999999999 58999999999999999999986
No 14
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=99.27 E-value=2.8e-12 Score=89.21 Aligned_cols=39 Identities=38% Similarity=0.583 Sum_probs=35.4
Q ss_pred cccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 57 LQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 57 L~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
+....+||.|||+++| .+|++||+||.|++++|+|||..
T Consensus 13 ~~~~~~LP~GWe~~~~-~~Gr~Yyinh~tk~TtW~dPr~~ 51 (53)
T 2jmf_A 13 LINEGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPRPG 51 (53)
T ss_dssp TTSCSCCCTTEEEEEC-TTSCEEEEETTTCCEESSCCCSS
T ss_pred cCcCCCCCcCcEEEEc-CCCCEEEEeCCCCcEecCCCCCC
Confidence 4445899999999999 79999999999999999999975
No 15
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=99.27 E-value=2.5e-12 Score=81.83 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=32.6
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.+||.|||.+.| .+|++||+|+.|++++|++|+..
T Consensus 2 ~~LP~gW~~~~~-~~G~~Yy~n~~t~~t~W~~P~~~ 36 (37)
T 1e0m_A 2 MGLPPGWDEYKT-HNGKTYYYNHNTKTSTWTDPRMS 36 (37)
T ss_dssp CCSCTTEEEEEC-SSCCEEEEETTTTEEESSCTTTC
T ss_pred CCCCCCcEEEEC-CCCCEEEEECCCCCeeeeCcCCC
Confidence 589999999999 58999999999999999999874
No 16
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=99.26 E-value=2.5e-12 Score=87.55 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=32.7
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.+||.|||.++| .+|++||+|+.|++++|+|||..
T Consensus 11 ~~LP~gWe~~~~-~~G~~Yy~nh~T~~ttWe~Pr~~ 45 (49)
T 2kpz_A 11 GFLPKGWEVRHA-PNGRPFFIDHNTKTTTWEDPRLK 45 (49)
T ss_dssp -CCCTTEEEEEC-TTSCEEEEETTTTEEESSCTTCC
T ss_pred CCCCCCcEEEEC-CCCCEEEEECCCCCEecCCCCCC
Confidence 789999999999 68999999999999999999986
No 17
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=83.75 Aligned_cols=35 Identities=26% Similarity=0.557 Sum_probs=33.1
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.+||.|||++.|. +|++||+|+.|++++|++|+..
T Consensus 6 ~~LP~GWe~~~d~-~Gr~YY~n~~t~~T~We~P~~~ 40 (43)
T 2dmv_A 6 SGLPPGWEQRVDQ-HGRVYYVDHVEKRTTWDRPSGP 40 (43)
T ss_dssp CSCCTTEEEEECT-TSCEEEEETTTCCEESSCSSSC
T ss_pred CCCCCCceEEECC-CCCEEEEECCCCCEecCCcCCC
Confidence 6899999999996 8999999999999999999875
No 18
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=99.23 E-value=6.5e-12 Score=86.01 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=33.6
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP 97 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~ 97 (220)
.+||.|||+++|. +|++||+|+.|++++|+||+...
T Consensus 10 ~~LP~gWe~~~~~-~Gr~Yy~nh~t~~T~W~~P~~~~ 45 (49)
T 2ysb_A 10 LPLPPGWSVDWTM-RGRKYYIDHNTNTTHWSHPLESG 45 (49)
T ss_dssp CCCCTTEEEEECS-SSCEEEEETTTTEEESSCTTTSC
T ss_pred CCCCCCceEEECC-CCCEEEEEcCCCCEEecCCCCCC
Confidence 6899999999996 89999999999999999999863
No 19
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.23 E-value=6.6e-12 Score=88.57 Aligned_cols=44 Identities=27% Similarity=0.377 Sum_probs=38.3
Q ss_pred cccccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645 53 FDIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP 97 (220)
Q Consensus 53 ~~iEL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~ 97 (220)
...+.+...+||.|||++.| .+|++||+||.|++++|+|||...
T Consensus 5 ~~~~~~~~~~LP~GWe~~~~-~~Gr~Yyinh~tk~TtWe~Pr~~~ 48 (57)
T 2ysd_A 5 SSGAEDNLGPLPENWEMAYT-ENGEVYFIDHNTKTTSWLDPRCLN 48 (57)
T ss_dssp SCCCCSCCCSCCSSEEEEEC-SSCCEEEEETTTTEEESSCTTTCS
T ss_pred cccCCCCCCCCCcCcEEEEC-CCCCEEEEECCCCcEecCCCCCcc
Confidence 34555667899999999999 489999999999999999999863
No 20
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5.2e-12 Score=90.24 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=37.5
Q ss_pred ccccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 54 DIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 54 ~iEL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
..+.+.+.+||.|||++.| .+|++||+||.|++++|+|||..
T Consensus 5 ~~~~d~~~~LP~GWE~~~d-~~Gr~YYvnh~tk~T~We~P~~~ 46 (60)
T 2yse_A 5 SSGLDSELELPAGWEKIED-PVYGIYYVDHINRKTQYENPVLE 46 (60)
T ss_dssp SCCCCCCSSCCSSEEEEEC-SSSCEEEEETTTTEEESSCHHHH
T ss_pred ccccCCCCCCCCCcEEEEC-CCCCEEEEeCCCCCeeccCCCch
Confidence 3456777999999999999 68999999999999999999974
No 21
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=99.18 E-value=1.3e-11 Score=80.11 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=32.4
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
+.+||.|||++.|. +|++||+|+.|++++|++|+.
T Consensus 5 ~~~LP~gW~~~~d~-~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 5 SSGLPPGWQSYLSP-QGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp CSSCCTTCEEEECT-TSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCCceEEECC-CCCEEEEECCCCCEeCCCCCC
Confidence 37899999999995 899999999999999999985
No 22
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.16 E-value=2.2e-11 Score=83.40 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=33.6
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
..+||.|||++.|. .|++||+|+.|++++|+||+..
T Consensus 11 ~~~LP~GWe~~~d~-~g~~YYvnh~t~~T~We~P~~~ 46 (49)
T 2dwv_A 11 REGLPPGWERVESS-EFGTYYVDHTNKRAQYRHPSGP 46 (49)
T ss_dssp SSCCCTTEEEEEET-TTEEEEEETTTTEEESSCCCCC
T ss_pred CCCCCcCcEEEECC-CCCEEEEECCCCCEeccCcCCC
Confidence 37899999999996 7999999999999999999975
No 23
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=99.16 E-value=2.1e-11 Score=80.31 Aligned_cols=35 Identities=37% Similarity=0.666 Sum_probs=32.8
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.+||.||+++.|. +|++||+|+.|++++|++|+..
T Consensus 7 ~~LP~gW~~~~~~-~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 7 MPLPPGWERRTDV-EGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp CCCCSSEEEEECT-TSCEEEEETTTTEEESSCCCSC
T ss_pred CCCCCCCEEEECC-CCCEEEEECCCCCCcccCCccc
Confidence 6899999999995 8999999999999999999875
No 24
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=99.06 E-value=8e-11 Score=82.12 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=34.6
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
+.+||.||+.+.|..+|++||+|+.|++++|++|+..
T Consensus 5 ~~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 4789999999999999999999999999999999875
No 25
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=99.04 E-value=8.8e-11 Score=78.35 Aligned_cols=40 Identities=35% Similarity=0.545 Sum_probs=35.8
Q ss_pred ccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 56 ELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 56 EL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
|+-.+.+||.|||.+.| .+|++||+|+.|++++|+|||..
T Consensus 2 ~~P~~~~LP~GWe~~~~-~~gr~y~~n~~t~~t~W~dPr~~ 41 (46)
T 1jmq_A 2 EIPDDVPLPAGWEMAKT-SSGQRYFKNHIDQTTTWQDPRKA 41 (46)
T ss_dssp CCCSSCCCCTTBCCBCC-SSCCCBEEETTTTEEESSCTTTS
T ss_pred CCCCCCCCCcCcEEEEc-CCCceEEEEecCCceeecCCCch
Confidence 34455899999999999 78999999999999999999986
No 26
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=99.04 E-value=1.1e-10 Score=76.39 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=30.9
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.+||.|||++.|. .| +||+|+.|++++|++|+..
T Consensus 2 ~~LP~GWe~~~d~-~g-~YY~n~~t~~tqWe~P~~~ 35 (38)
T 2ho2_A 2 SDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGRA 35 (38)
T ss_dssp CCSCTTEEEEECS-SC-EEEEETTTTEEESSCCCC-
T ss_pred CcCCCCceEEEeC-CC-CEEEecCCCCEeccCCCCC
Confidence 4799999999997 78 9999999999999999874
No 27
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.97 E-value=3.8e-10 Score=74.19 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=30.3
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR 94 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR 94 (220)
+.+||.|||++.|.. | .||+|+.|++++|++|+
T Consensus 6 ~~~LP~GWe~~~~~~-G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 6 SGGLPPGWRKIHDAA-G-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCCTTEEEEEETT-E-EEEEESSSCCEESSCCC
T ss_pred CCCCCCCcEEEEcCC-C-CEEEEcCCCCEeccCCC
Confidence 478999999999986 8 59999999999999996
No 28
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=98.95 E-value=3.3e-10 Score=84.56 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=35.1
Q ss_pred cccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 57 LQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 57 L~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
-+...+||.|||++.| .+|++||+|+.|++++|++|+..
T Consensus 7 ~~~~~~LP~gWe~~~~-~~Gr~Yy~n~~t~~t~W~~P~~~ 45 (88)
T 1tk7_A 7 MDALGPLPDGWEKKIQ-SDNRVYFVNHKNRTTQWEDPRTQ 45 (88)
T ss_dssp SSTTSSSSSSCCEEEE-TTTEEEEEETTTTEEEEESCCCT
T ss_pred CCccCCCCCCcEEEEC-CCCCEEEEECCCCCeEeeccccc
Confidence 3445789999999999 68999999999999999999986
No 29
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=98.89 E-value=9.5e-10 Score=86.90 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=36.0
Q ss_pred ccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645 58 QLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP 97 (220)
Q Consensus 58 ~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~ 97 (220)
+.+.+||.|||.+.|. +|++||+||.|++++|+|||.+.
T Consensus 68 d~~~pLP~GWE~r~d~-~Gr~YfIdH~tktTtW~dPRl~~ 106 (109)
T 3l4h_A 68 DTRLELPRGWEIKTDQ-QGKSFFVDHNSRATTFIDPRIPL 106 (109)
T ss_dssp CTTSCCCTTEEEEECT-TCCEEEEETTTTEEESSCSCCSC
T ss_pred CCCCCCCCCCeEEECC-CCCEEEEeCCCCCEeeCCCCccc
Confidence 4568999999999998 89999999999999999999874
No 30
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=98.87 E-value=9.5e-10 Score=82.06 Aligned_cols=37 Identities=38% Similarity=0.575 Sum_probs=33.5
Q ss_pred ccCCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 58 QLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 58 ~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
....+||.|||++.| .+|++||+|+.|++++|+|||.
T Consensus 52 ~~~~~LP~gWe~~~~-~~G~~Yy~nh~t~~ttw~~Prl 88 (88)
T 1tk7_A 52 INEGPLPPGWEIRYT-AAGERFFVDHNTRRTTFEDPRP 88 (88)
T ss_dssp HHSCSSCSSCEEEEE-TTTEEEEEETTTTEEESSSSCC
T ss_pred ccccccCCceEEEEC-CCCCEEEEECCCCcEeCCCCCC
Confidence 345899999999999 6799999999999999999984
No 31
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=98.87 E-value=1.4e-09 Score=81.48 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=33.6
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
..+||.|||++.| .+|++||+|+.|++++|+|||.+
T Consensus 53 ~~~LP~gWe~~~~-~~G~~Yy~n~~t~~t~w~~Pr~~ 88 (90)
T 2kxq_A 53 LGPLPPGWEIRNT-ATGRVYFVDHNNRTTQFTDPRLS 88 (90)
T ss_dssp TCCCCSSCCEEEC-TTSCEEEEETTTTEEESSCTTTS
T ss_pred ccccCCCceEEEC-CCCCEEEEECCCCcEecCCCCcC
Confidence 3689999999999 68999999999999999999986
No 32
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.85 E-value=7e-10 Score=76.81 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
..||.||+.+.|..+|++||+|+.|++++|++|+..
T Consensus 9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 569999999999999999999999999999999886
No 33
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=98.83 E-value=1.9e-09 Score=80.67 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=33.3
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
+.+||.|||++.| .+|++||+|+.|++++|++|+..
T Consensus 7 ~~~LP~gWe~~~~-~~Gr~YY~n~~t~~t~W~~P~~~ 42 (90)
T 2kxq_A 7 PPDLPEGYEQRTT-QQGQVYFLHTQTGVSTWHDPRVP 42 (90)
T ss_dssp CCSCCSSCEEEEE-TTTEEEEEETTTTEEESSCSSSC
T ss_pred CCCCCCCcEEEEC-CCCCEEEEECCCCeEeeeccccc
Confidence 4689999999999 48999999999999999999975
No 34
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.82 E-value=2.5e-09 Score=75.78 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=34.6
Q ss_pred ccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 56 ELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 56 EL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.++-+.+||.|||+..|. +| +||+|+.|++++|++|...
T Consensus 13 ~~~~~~~LPpGW~~~~D~-sG-tYY~h~~T~tTQWerP~~~ 51 (55)
T 2e45_A 13 AFETDSDLPAGWMRVQDT-SG-TYYWHIPTGTTQWEPPGRA 51 (55)
T ss_dssp TTCSCSCCCTTEEEEEET-TE-EEEEETTTCCEESSCCCCC
T ss_pred cccCCCCCCCCCeEeecC-CC-CEEEEcCCCCCccCCCCCC
Confidence 355668899999999999 89 9999999999999999653
No 35
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=98.70 E-value=5.9e-09 Score=85.74 Aligned_cols=37 Identities=27% Similarity=0.591 Sum_probs=30.6
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP 97 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~ 97 (220)
.+||.|||.+.|..+|++||+|+.|++++|++|+...
T Consensus 8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~~ 44 (166)
T 3tc5_A 8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNS 44 (166)
T ss_dssp --CCTTEEEEECTTTCCEEEEETTTCCEESSCC----
T ss_pred CCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCCc
Confidence 6899999999998899999999999999999999753
No 36
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.53 E-value=3.3e-08 Score=74.31 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=33.3
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
..+||.||+++.|. +|++||+|+.|++++|++|+..
T Consensus 9 ~~~lp~~W~e~~~~-~Gr~YYyN~~T~~s~We~P~~~ 44 (92)
T 2l5f_A 9 ASGAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPDDL 44 (92)
T ss_dssp TTBTTTTEEEEECT-TSCEEEEETTTTEEESSCSGGG
T ss_pred CCCCCCCcEEEEcC-CCCEEEEECCCCceecccCccc
Confidence 46799999999998 8999999999999999999875
No 37
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.53 E-value=2.6e-08 Score=71.52 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=31.6
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
..||.||+.+.| .+|++||+|+.|++++|++|+..
T Consensus 39 ~~lp~gW~~~~~-~~Gr~Yy~n~~t~~t~W~~P~~~ 73 (75)
T 1o6w_A 39 LLRENGWKAAKT-ADGKVYYYNPTTRETSWTIPAFE 73 (75)
T ss_dssp HHHHHTCEEEEC-TTCCEEEEETTTTEEESSCCCCC
T ss_pred cCCCCeEEEEEC-CCCCEEEEECCCCCEECCCCCCC
Confidence 458999999988 47999999999999999999875
No 38
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.48 E-value=1e-07 Score=62.61 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=30.9
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
.|+|.+|+.+.+ ..|++||+|..|++++|+.|.+
T Consensus 6 ~~~~~~W~e~~~-~~G~~YYyN~~T~eS~We~P~~ 39 (40)
T 2ysi_A 6 SGTEEIWVENKT-PDGKVYYYNARTRESAWTKPDG 39 (40)
T ss_dssp CCCCCSEEEEEC-TTSCEEEEETTTCCEESSCCSC
T ss_pred CCCCCCCEEEEC-CCCCEEEEECCCCCEEeCCCCC
Confidence 789999999885 6899999999999999999864
No 39
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.46 E-value=8.3e-08 Score=58.63 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=25.2
Q ss_pred ccceeceecCcccEEEEecCCCcccCCCC
Q 027645 65 LEWERCLDIQSGEIHFYNTRTHKKTSGDP 93 (220)
Q Consensus 65 sgWEq~LDlqSG~iYY~N~~T~~stw~dP 93 (220)
.||| .|..+|+.||+|..|++++|+.|
T Consensus 1 ~gWe--~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE--IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE--EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe--EECCCCCeEEEECCCCCEeccCC
Confidence 4899 89999999999999999999977
No 40
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=98.40 E-value=8.9e-08 Score=88.93 Aligned_cols=38 Identities=32% Similarity=0.499 Sum_probs=34.8
Q ss_pred cCCCCCccceeceecCcccEEEEecCCCcccCCCCCCCC
Q 027645 59 LETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGSP 97 (220)
Q Consensus 59 l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~~ 97 (220)
...|||.|||++.| .+|++||+||.|.+|+|.|||.+.
T Consensus 5 ~~~~lP~gWe~~~~-~~g~~y~i~h~~~~t~w~~Pr~~~ 42 (429)
T 3olm_A 5 QLGPLPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPS 42 (429)
T ss_dssp CCCCCCTTCCCCCS-SCCCCCEEETTTTEEESSCTTSCC
T ss_pred cCCCCCCCceeEEC-CCCCeEEEeCCCcceeccCCCCCc
Confidence 34799999999999 589999999999999999999874
No 41
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.38 E-value=1.3e-07 Score=62.19 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=26.6
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPR 94 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR 94 (220)
.++|.+|+.+.+. .|+.||+|..|++++|+.|.
T Consensus 8 ~~~~~~W~e~~~~-~G~~YYyN~~T~eS~We~P~ 40 (41)
T 1ywi_A 8 GSAKSMWTEHKSP-DGRTYYYNTETKQSTWEKPD 40 (41)
T ss_dssp ----CCEEEEEET-TTEEEEEETTTTEEEESCC-
T ss_pred CCCCCCcEEEECC-CCCEEEEECCCCCEEeCCCC
Confidence 5678899999986 79999999999999999885
No 42
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=98.37 E-value=9.4e-08 Score=84.24 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=32.7
Q ss_pred CCCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 60 ETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 60 ~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
..|||.|||++.+. +|++||+||.|++++|+|||.
T Consensus 9 ~~~l~~~we~~~~~-~~~~y~~~h~~~tt~w~~p~~ 43 (261)
T 1eg3_A 9 STSVQGPWERAISP-NKVPYYINHETQTTCWDHPKM 43 (261)
T ss_dssp HTTCCTTEEEEECT-TSCEEEEETTTTEEESSCHHH
T ss_pred CCCCCCCcceeECC-CCCeEeecCCcccccCCCCch
Confidence 38999999999985 799999999999999999995
No 43
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.34 E-value=3.2e-07 Score=59.01 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=29.3
Q ss_pred CCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 62 pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
+...+|+.+.+.. |+.||+|..|++++|+.|.+
T Consensus 3 ~~~~~W~e~~~~~-G~~YYyN~~T~es~We~P~~ 35 (37)
T 1e0l_A 3 TAVSEWTEYKTAD-GKTYYYNNRTLESTWEKPQE 35 (37)
T ss_dssp SSSCSCEEEECTT-SCEEEEETTTTEEESSCCSS
T ss_pred CCCCCeEEEECCC-CCEEEEECCCCCEEecCCCc
Confidence 4566999999875 99999999999999999865
No 44
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.30 E-value=3.8e-07 Score=65.98 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=31.3
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
.++|.+|+.+.|. .|++||+|+.|++++|++|++
T Consensus 42 ~~~~~~W~~~~~~-~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 42 TAVKTVWVEGLSE-DGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp SSCCCSEEEEEET-TTEEEEEETTTTEEESSCCCC
T ss_pred cCCCccEEEEECC-CCCEEEEECcCCCEeccCcCC
Confidence 5789999999997 799999999999999999974
No 45
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.18 E-value=5.6e-07 Score=64.49 Aligned_cols=31 Identities=39% Similarity=0.581 Sum_probs=28.5
Q ss_pred ccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 65 LEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 65 sgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
+||+++.|. +|++||+|+.|++++|++|+..
T Consensus 2 ~~W~~~~~~-~Gr~YY~n~~T~~s~W~~P~~~ 32 (75)
T 1o6w_A 2 SIWKEAKDA-SGRIYYYNTLTKKSTWEKPKEL 32 (75)
T ss_dssp CCEEEEECT-TCCEEEEETTTTEEESSCCHHH
T ss_pred CCCeEEECC-CCCeEEEECCCCCEEeecchhh
Confidence 489999997 8999999999999999999864
No 46
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.13 E-value=6.5e-07 Score=67.25 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=30.7
Q ss_pred CCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 62 PLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 62 pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
+||.+|+.+.+. +|++||+|+.|++++|++|+..
T Consensus 52 ~~~~~W~~~~~~-~Gr~Yy~N~~T~~s~We~P~~~ 85 (92)
T 2l5f_A 52 LSKCPWKEYKSD-SGKTYYYNSQTKESRWAKPKEL 85 (92)
T ss_dssp HHSCSEEEEECT-TCCEEEEETTTTEEESCCCHHH
T ss_pred ccccceEEEECC-CCCEEEEECCCCCeeccCchhH
Confidence 578999999874 8999999999999999999864
No 47
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.09 E-value=1.6e-06 Score=62.61 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=28.5
Q ss_pred ccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 65 LEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 65 sgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.+|+++.|.. |++||+|+.|++++|++|+..
T Consensus 5 ~~W~e~~~~~-G~~YYyN~~T~~s~We~P~~~ 35 (75)
T 2jxw_A 5 GRWVEGITSE-GYHYYYDLISGASQWEKPEGF 35 (75)
T ss_dssp CCEEEEEETT-TEEEEEETTTTEEECSCCSSC
T ss_pred CCcEEEECCC-CCEEEEECCCCCEeecCCCcc
Confidence 4899999985 999999999999999999875
No 48
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=97.56 E-value=4.9e-05 Score=62.19 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=32.9
Q ss_pred CCCCccceeceecCcccEEEEecCCCcccCCCCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRG 95 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~ 95 (220)
..||.|||.+++..+|+.||+|..|...+|+.|..
T Consensus 6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~ 40 (177)
T 1yw5_A 6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40 (177)
T ss_dssp CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred CCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence 66999999999999999999999999999998865
No 49
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.31 E-value=0.0002 Score=49.22 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=26.8
Q ss_pred cceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 66 EWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 66 gWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.|..+.+. .|+.||+|..|++++|+.|...
T Consensus 8 ~W~e~~s~-~G~~YYyN~~T~eS~WekP~~~ 37 (50)
T 2dk1_A 8 RWVEGITS-EGYHYYYDLISGASQWEKPEGF 37 (50)
T ss_dssp CEEECCCS-TTCCCEEESSSCCEESSCCTTC
T ss_pred CeEEEECC-CCCEEEEECCCCCEEeeCChhh
Confidence 69999887 5999999999999999988654
No 50
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.59 E-value=0.0086 Score=44.40 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=27.6
Q ss_pred CCCc-cceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 62 PLPL-EWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 62 pLPs-gWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
++|- .|...-. ..||+||+|..|+.++|+.|.+.
T Consensus 16 pipgt~W~~v~T-~dGR~fyyN~~Tk~S~WekP~eL 50 (73)
T 2dk7_A 16 PIPGTPWCVVWT-GDERVFFYNPTTRLSMWDRPDDL 50 (73)
T ss_dssp ECSSSSCEEEEE-SSSCEEEEETTTTEECSSCCTTT
T ss_pred CCCCCCcEEEEC-CCCCEEEecCcccceeccCChHh
Confidence 4443 6977654 57999999999999999998876
No 51
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=95.26 E-value=0.0061 Score=44.45 Aligned_cols=27 Identities=30% Similarity=0.666 Sum_probs=19.9
Q ss_pred CCCCccceeceec-Ccc------cEEEEecCCCcc
Q 027645 61 TPLPLEWERCLDI-QSG------EIHFYNTRTHKK 88 (220)
Q Consensus 61 ~pLPsgWEq~LDl-qSG------~iYY~N~~T~~s 88 (220)
.+||.||+..+-+ ++| .|||+.. +|++
T Consensus 11 p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP-~Gkr 44 (72)
T 2ky8_A 11 PALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKK 44 (72)
T ss_dssp SSSCTTCEEEEEECCSSTTTTCEEEEEECT-TCCE
T ss_pred CCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCE
Confidence 5899999887763 334 5899977 6654
No 52
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=91.91 E-value=0.11 Score=40.09 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=23.2
Q ss_pred CcCCccccccccccc--CCCCCccceeceec-Ccc------cEEEEecCCCccc
Q 027645 45 GVTTKSSIFDIELQL--ETPLPLEWERCLDI-QSG------EIHFYNTRTHKKT 89 (220)
Q Consensus 45 ~~~krk~i~~iEL~l--~~pLPsgWEq~LDl-qSG------~iYY~N~~T~~st 89 (220)
++++|.+|.+.+=.+ +.+||.||+..+-+ ++| .|||++. +|++-
T Consensus 4 ~~~~rr~~i~~~~~~~~~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~Gkkf 56 (97)
T 3c2i_A 4 SPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAF 56 (97)
T ss_dssp -----------CCCCCCCTTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEE
T ss_pred CCcccceeEecCCcccCCCCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCEE
Confidence 567788888777544 47899999887653 333 6899988 67553
No 53
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=90.53 E-value=0.27 Score=39.98 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCcCCccccccccccc--CCCCCccceeceec-Ccc------cEEEEecCCCccc
Q 027645 44 KGVTTKSSIFDIELQL--ETPLPLEWERCLDI-QSG------EIHFYNTRTHKKT 89 (220)
Q Consensus 44 ~~~~krk~i~~iEL~l--~~pLPsgWEq~LDl-qSG------~iYY~N~~T~~st 89 (220)
-+.++|.+|.++|-.. ..+||.||+..+-+ ++| .|||++.. |++-
T Consensus 17 ~~~~~rr~vi~~~~~~~~~~~LP~GWkRe~~~RksG~Sagk~DVYY~SP~-GKkf 70 (133)
T 1ub1_A 17 ASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQ-GKAF 70 (133)
T ss_dssp SCCCCCCCCCCTTSCSSCCCCBTTBCEEEEEECCCSSSCCSEEEEEECTT-SCEE
T ss_pred cCccCccceeeccccccCCCCCCCCCEEEEEEecCCCCCCceeEEEECCC-CCee
Confidence 4567788888666544 47899999877663 444 68999874 6543
No 54
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=82.72 E-value=0.52 Score=34.39 Aligned_cols=21 Identities=38% Similarity=0.901 Sum_probs=17.6
Q ss_pred eeCccceeEeEeeCCCCCCCCCCcC
Q 027645 177 TACMRCHMLVMLCKSSPTCPNCKFL 201 (220)
Q Consensus 177 ~gC~~ClmyVM~~k~~p~CP~Ck~~ 201 (220)
.+|.+|+..| ....||+|.+.
T Consensus 12 ~AC~~C~~~~----~~~~CPnC~s~ 32 (69)
T 1ryq_A 12 KACRHCHYIT----SEDRCPVCGSR 32 (69)
T ss_dssp EEETTTCBEE----SSSSCTTTCCC
T ss_pred hhHHhCCccc----cCCcCCCccCC
Confidence 5899999965 77899999864
No 55
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=82.56 E-value=0.55 Score=35.31 Aligned_cols=27 Identities=30% Similarity=0.741 Sum_probs=18.8
Q ss_pred cceeeeeCccceeEeEeeCCCCCCCCCCcCC
Q 027645 172 QEMVATACMRCHMLVMLCKSSPTCPNCKFLH 202 (220)
Q Consensus 172 ~~mv~~gC~~ClmyVM~~k~~p~CP~Ck~~~ 202 (220)
..|..-+|.+|+..+ .. -.||+|.+..
T Consensus 19 ~~m~~rAC~~C~~v~--~~--d~CPnCgs~~ 45 (81)
T 3p8b_A 19 SHMSEKACRHCHYIT--SE--DRCPVCGSRD 45 (81)
T ss_dssp ---CCEEETTTCBEE--SS--SSCTTTCCCC
T ss_pred cchhHHHHhhCCCcc--CC--CCCCCCCCCc
Confidence 678888999999875 22 3799999754
No 56
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=79.14 E-value=1.3 Score=31.88 Aligned_cols=25 Identities=32% Similarity=0.810 Sum_probs=18.1
Q ss_pred CCCCCccceeceecC-cc------cEEEEecC
Q 027645 60 ETPLPLEWERCLDIQ-SG------EIHFYNTR 84 (220)
Q Consensus 60 ~~pLPsgWEq~LDlq-SG------~iYY~N~~ 84 (220)
+.|||.||+..+=+. +| .|||+...
T Consensus 3 ~~plp~GW~R~~~~R~~G~s~gk~DvyY~sP~ 34 (69)
T 3vxv_A 3 HKPVPCGWERVVKQRLSGKTAGKFDVYFISPQ 34 (69)
T ss_dssp -CCSCTTCEEEEEECCSSTTTTCEEEEEECTT
T ss_pred CCcCCCCCEEEEEEeccCCCCCcceEEEEcCC
Confidence 479999999887653 33 68999544
No 57
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=78.55 E-value=0.076 Score=41.77 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.7
Q ss_pred CCCCccceeceecCcccEEEEecCCC
Q 027645 61 TPLPLEWERCLDIQSGEIHFYNTRTH 86 (220)
Q Consensus 61 ~pLPsgWEq~LDlqSG~iYY~N~~T~ 86 (220)
--.|.|||++.+.+ |+|||+|+.+.
T Consensus 44 rr~p~~we~~~~~~-~lV~~vn~~~d 68 (109)
T 3l4h_A 44 RRDARNFERYQHNR-DLVNFINMFAD 68 (109)
T ss_dssp HHCTHHHHHHTTCH-HHHHHHHTTCC
T ss_pred hcCCcChhhhcCcC-CceEEeccCCC
Confidence 34799999999975 99999999984
No 58
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=77.05 E-value=1.6 Score=31.86 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=20.2
Q ss_pred CCCCccceeceec-Cc------ccEEEEecCCCccc
Q 027645 61 TPLPLEWERCLDI-QS------GEIHFYNTRTHKKT 89 (220)
Q Consensus 61 ~pLPsgWEq~LDl-qS------G~iYY~N~~T~~st 89 (220)
..||.||+..+-+ ++ ..|||++. +|++-
T Consensus 9 p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP-~Gkk~ 43 (75)
T 1d9n_A 9 PALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRI 43 (75)
T ss_dssp TTTCSSCEEEECSSSSSCTTCCCCEEEECS-SSCEE
T ss_pred CCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCee
Confidence 6799999876643 22 46899988 77654
No 59
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=76.89 E-value=2.3 Score=31.82 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=32.0
Q ss_pred ccccccCCCCCccceeceecCcccEEEEecCCCcccCCCCCCC
Q 027645 54 DIELQLETPLPLEWERCLDIQSGEIHFYNTRTHKKTSGDPRGS 96 (220)
Q Consensus 54 ~iEL~l~~pLPsgWEq~LDlqSG~iYY~N~~T~~stw~dPR~~ 96 (220)
.+.++.-.+||.||-+- .-.||-.-|+...|..-||..|-.-
T Consensus 20 ~~g~~~~~~LPeGW~~v-~H~SGmP~YlH~~trV~T~SrPY~l 61 (79)
T 3le4_A 20 SRGRPPTEPLPDGWIMT-FHNSGVPVYLHRESRVVTWSRPYFL 61 (79)
T ss_dssp ----CCCCCCCTTEEEE-ECTTSSEEEEETTTTEEESSCCCCC
T ss_pred hcCCCcCCcCCCccEEE-EecCCceEEEeccceEEeccCCeEe
Confidence 34455558999999875 5579999999999999999887653
No 60
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=68.11 E-value=3.2 Score=29.39 Aligned_cols=31 Identities=29% Similarity=0.704 Sum_probs=22.7
Q ss_pred eeeeeCccceeEeEeeCCCCCCCCCCc----CCCCCCCC
Q 027645 174 MVATACMRCHMLVMLCKSSPTCPNCKF----LHPPDQSP 208 (220)
Q Consensus 174 mv~~gC~~ClmyVM~~k~~p~CP~Ck~----~~p~~~~~ 208 (220)
|.+..|++|-.|-+ .-.||.|.. .||+-.+|
T Consensus 4 s~mr~C~~CgvYTL----k~~CP~CG~~T~~~hParfSp 38 (60)
T 2apo_B 4 MRMKKCPKCGLYTL----KEICPKCGEKTVIPKPPKFSL 38 (60)
T ss_dssp CCCEECTTTCCEES----SSBCSSSCSBCBCCCCCCCCT
T ss_pred hhceeCCCCCCEec----cccCcCCCCcCCCCCCCCCCC
Confidence 36778999999998 566999994 44444444
No 61
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=67.79 E-value=1.6 Score=30.70 Aligned_cols=21 Identities=33% Similarity=0.888 Sum_probs=15.4
Q ss_pred eeCccceeEeEeeCCCCCCCCCCcC
Q 027645 177 TACMRCHMLVMLCKSSPTCPNCKFL 201 (220)
Q Consensus 177 ~gC~~ClmyVM~~k~~p~CP~Ck~~ 201 (220)
-+|.+|++.+ .. -.||||.+-
T Consensus 2 rAC~~C~~v~--~~--~~CpnC~~~ 22 (59)
T 3lpe_B 2 RACLKCKYLT--ND--EICPICHSP 22 (59)
T ss_dssp EEETTTCBEE--SS--SBCTTTCCB
T ss_pred cccccCCccc--CC--CCCCCCCCC
Confidence 5799999874 22 279999863
No 62
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=63.47 E-value=4.1 Score=28.92 Aligned_cols=31 Identities=35% Similarity=0.834 Sum_probs=22.8
Q ss_pred eeeeeCccceeEeEeeCCCCCCCCCC----cCCCCCCCC
Q 027645 174 MVATACMRCHMLVMLCKSSPTCPNCK----FLHPPDQSP 208 (220)
Q Consensus 174 mv~~gC~~ClmyVM~~k~~p~CP~Ck----~~~p~~~~~ 208 (220)
|-..-|+.|-.|.+ ...||.|. +.||.-.+|
T Consensus 3 s~mr~C~~Cg~YTL----k~~CP~CG~~t~~ahParfSP 37 (60)
T 2aus_D 3 FRIRKCPKCGRYTL----KETCPVCGEKTKVAHPPRFSP 37 (60)
T ss_dssp -CCEECTTTCCEES----SSBCTTTCSBCEESSCCCCCS
T ss_pred ccceECCCCCCEEc----cccCcCCCCccCCCCCCCCCC
Confidence 34668999999998 56799998 455655555
No 63
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=61.93 E-value=1.8 Score=31.44 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=21.1
Q ss_pred eeeeCccceeEeEeeC--CCCCCCCCCcCCCC
Q 027645 175 VATACMRCHMLVMLCK--SSPTCPNCKFLHPP 204 (220)
Q Consensus 175 v~~gC~~ClmyVM~~k--~~p~CP~Ck~~~p~ 204 (220)
++++|+ |..+..+-. ..-.|| |...+-.
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeee
Confidence 688999 998876654 347899 9976643
No 64
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=45.51 E-value=11 Score=27.00 Aligned_cols=29 Identities=17% Similarity=0.549 Sum_probs=22.9
Q ss_pred cceeeeeCccceeEeEeeCCC-CCCCCCCc
Q 027645 172 QEMVATACMRCHMLVMLCKSS-PTCPNCKF 200 (220)
Q Consensus 172 ~~mv~~gC~~ClmyVM~~k~~-p~CP~Ck~ 200 (220)
..-|.--|..|..-|-+-..+ .+||.|..
T Consensus 24 ~~~v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 24 TATLKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp -CCCCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred CceEEEECCCCCCcceeCCCCCccCCCCCc
Confidence 345777899999998776554 78999998
No 65
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=43.05 E-value=13 Score=28.19 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=23.7
Q ss_pred ceeeeeCccceeEeEeeCCCC-CCCCCCcCC
Q 027645 173 EMVATACMRCHMLVMLCKSSP-TCPNCKFLH 202 (220)
Q Consensus 173 ~mv~~gC~~ClmyVM~~k~~p-~CP~Ck~~~ 202 (220)
.-+..-|..|--.+-+..... .||.|.+..
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 446889999988777766667 899998653
No 66
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=38.72 E-value=12 Score=30.54 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=19.7
Q ss_pred cceeeeeCccceeEeEeeCCCC-CCCCCCc
Q 027645 172 QEMVATACMRCHMLVMLCKSSP-TCPNCKF 200 (220)
Q Consensus 172 ~~mv~~gC~~ClmyVM~~k~~p-~CP~Ck~ 200 (220)
..|+.-.|+.|-+- .--..-| .||.|+.
T Consensus 151 ~~~~~~~C~~CG~~-~~g~~~p~~CP~C~~ 179 (191)
T 1lko_A 151 EQATKWRCRNCGYV-HEGTGAPELCPACAH 179 (191)
T ss_dssp EEEEEEEETTTCCE-EEEEECCSBCTTTCC
T ss_pred CCCceEEECCCCCE-eeCCCCCCCCCCCcC
Confidence 56889999999743 3332334 9999984
No 67
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=34.36 E-value=16 Score=28.42 Aligned_cols=29 Identities=21% Similarity=0.587 Sum_probs=21.4
Q ss_pred ceeeeeCccceeEeEee--CCCCCCCCCCcCC
Q 027645 173 EMVATACMRCHMLVMLC--KSSPTCPNCKFLH 202 (220)
Q Consensus 173 ~mv~~gC~~ClmyVM~~--k~~p~CP~Ck~~~ 202 (220)
.|.-+-|..|-+-+ .. ....+||+|++-.
T Consensus 64 ~v~p~~C~~CG~~F-~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 64 LIKPAQCRKCGFVF-KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp EECCCBBTTTCCBC-CCCSSCCSSCSSSCCCC
T ss_pred EEECcChhhCcCee-cccCCCCCCCcCCCCCc
Confidence 45667899999886 32 2448999999754
No 68
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=33.63 E-value=18 Score=28.52 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=22.7
Q ss_pred ceeeeeCccceeEeEeeC-----------C----------CCCCCCCCcCC
Q 027645 173 EMVATACMRCHMLVMLCK-----------S----------SPTCPNCKFLH 202 (220)
Q Consensus 173 ~mv~~gC~~ClmyVM~~k-----------~----------~p~CP~Ck~~~ 202 (220)
.-+.+-|..|-..+-+.. . .-+||+|.+..
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence 346889999987776665 4 67899998654
No 69
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=29.61 E-value=6 Score=30.43 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=18.2
Q ss_pred eCccceeEeEeeCCCCCCCCCCcCC
Q 027645 178 ACMRCHMLVMLCKSSPTCPNCKFLH 202 (220)
Q Consensus 178 gC~~ClmyVM~~k~~p~CP~Ck~~~ 202 (220)
.|..|++|. ..+.+..||+||.-.
T Consensus 45 vCrpCyEYE-rkeG~q~CpqCktrY 68 (93)
T 1weo_A 45 ACRPCYEYE-RREGTQNCPQCKTRY 68 (93)
T ss_dssp CCHHHHHHH-HHTSCSSCTTTCCCC
T ss_pred hhHHHHHHH-HhccCccccccCCcc
Confidence 566777774 468999999999654
No 70
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=28.47 E-value=30 Score=26.28 Aligned_cols=25 Identities=28% Similarity=0.759 Sum_probs=16.7
Q ss_pred eeeeCccc------eeEeEeeCCCC-CCCCCCc
Q 027645 175 VATACMRC------HMLVMLCKSSP-TCPNCKF 200 (220)
Q Consensus 175 v~~gC~~C------lmyVM~~k~~p-~CP~Ck~ 200 (220)
-.+||. | .++..|.+..| +||.|..
T Consensus 56 RiVGC~-~~~D~h~v~W~~l~~g~~~RC~eCG~ 87 (98)
T 1v54_F 56 RIVGCI-CEEDNSTVIWFWLHKGEAQRCPSCGT 87 (98)
T ss_dssp EEEEEC-CSTTCSCCEEEEEESSSCEECTTTCC
T ss_pred eEEeec-CCCCCceeEEEEEeCCCceECCCCCe
Confidence 455665 4 25566777776 8999984
No 71
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=27.00 E-value=33 Score=28.45 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=19.5
Q ss_pred cceeeeeCccceeEeEeeCCCC-CCCCCCc
Q 027645 172 QEMVATACMRCHMLVMLCKSSP-TCPNCKF 200 (220)
Q Consensus 172 ~~mv~~gC~~ClmyVM~~k~~p-~CP~Ck~ 200 (220)
..|..-.|+.|-+.+ -. ..| .||.|+.
T Consensus 167 ~~~~~~~C~~CG~i~-~g-~~p~~CP~C~~ 194 (202)
T 1yuz_A 167 DDDKFHLCPICGYIH-KG-EDFEKCPICFR 194 (202)
T ss_dssp CSCCEEECSSSCCEE-ES-SCCSBCTTTCC
T ss_pred CCCcEEEECCCCCEE-cC-cCCCCCCCCCC
Confidence 457889999997443 33 445 9999983
No 72
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=23.34 E-value=81 Score=22.79 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=26.9
Q ss_pred cceeeeeCccceeEeEeeCCCC--CCCCCCcCCC
Q 027645 172 QEMVATACMRCHMLVMLCKSSP--TCPNCKFLHP 203 (220)
Q Consensus 172 ~~mv~~gC~~ClmyVM~~k~~p--~CP~Ck~~~p 203 (220)
..||..-|..|.-..-+..-.- +||.|++..-
T Consensus 33 ~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred CCEeEEECCCCCCCccCCceeecccCcCCCCcCe
Confidence 5789999999999887776666 9999998763
No 73
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.89 E-value=23 Score=23.71 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=18.2
Q ss_pred eeeeCccceeEe-Eee-CCCCCCCCCCcCC
Q 027645 175 VATACMRCHMLV-MLC-KSSPTCPNCKFLH 202 (220)
Q Consensus 175 v~~gC~~ClmyV-M~~-k~~p~CP~Ck~~~ 202 (220)
..--||+|-.-| |.. ...-.|++|.+.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 455689886533 333 3447899998754
No 74
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.10 E-value=35 Score=24.33 Aligned_cols=22 Identities=27% Similarity=0.788 Sum_probs=12.4
Q ss_pred eCccceeEeEeeCCCC--CCCCCC
Q 027645 178 ACMRCHMLVMLCKSSP--TCPNCK 199 (220)
Q Consensus 178 gC~~ClmyVM~~k~~p--~CP~Ck 199 (220)
-||.|-+.|+.....+ .||.|+
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~ 50 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCH 50 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTC
T ss_pred ECcCCCchheecCCCCceEeCCCC
Confidence 4777766665443222 477666
Done!