BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027646
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 11/226 (4%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAP 60
R+Q A R+ +P E F+E+++ + +++W+PP+G + SLY+RP ++ + LG+ P
Sbjct: 106 RLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRP 165
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ EY +L+ SP G YFK GI P+++ + HE RA+PGGTG K GNY
Sbjct: 166 SNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAA 225
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKSIIDVA 176
G V++LD + +RY+EE+ N+F V G+ + TP + G++LPGITR S++ +A
Sbjct: 226 EMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLA 285
Query: 177 QSQGFQXXXXX------XXXXXXXDADEVFCTGTAVVVSPVGSITY 216
GF + EVF GTA V++PV + +
Sbjct: 286 TDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKH 331
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 123/218 (56%), Gaps = 4/218 (1%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG-SLYIRPLLMGSGAVLGLAP 60
R+Q A+R+ MP ++F++A K V AN+ ++PP G G +LY+RPLL+G G V+G+ P
Sbjct: 85 RLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHP 144
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
A EY F I+ PVGNYFK G+AP N +++ + RA P GTG K GNY
Sbjct: 145 ADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAH 204
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIF-VVKGNVISTPAIKGTILPGITRKSIIDVAQSQ 179
+SDV+YLD +EEV S N F + K N TP + +ILP +T+ S++ +A+ +
Sbjct: 205 ERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITP-LSPSILPSVTKYSLLYLAEHR 263
Query: 180 -GFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITY 216
G + E GTA V+SP+G + +
Sbjct: 264 FGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQH 301
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 11/226 (4%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAP 60
R+Q A R+ +P E F+E+++ + +++W+PP+G + SLY+RP ++ + LG+ P
Sbjct: 105 RLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRP 164
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ EY +L+ SP G YFK GI P+++ + HE RA+PGGTG K GNY
Sbjct: 165 SNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAA 224
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKSIIDVA 176
G V++LD + +RY+EE+ N+F V G+ + TP + G++LPGITR S++ +A
Sbjct: 225 EMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLA 284
Query: 177 QSQGFQXXXXX------XXXXXXXDADEVFCTGTAVVVSPVGSITY 216
GF + EVF GTA V++PV + +
Sbjct: 285 TDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKH 330
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 11/226 (4%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAP 60
R++ A R+ +P F+E+++ + +K W+P +G + +LY+RP + + LG+ P
Sbjct: 101 RLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFIFATEPGLGVRP 160
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
A +Y +L+ SP G YFK GIAP+++ V E RA PGGTG K GNY
Sbjct: 161 ATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKFGGNYAASLLAQAEAA 220
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKSIIDVA 176
G V++LD V +RY+EE+ NIF V G+ + TP + G++LPGITR S++ +A
Sbjct: 221 ENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSLLPGITRDSLLQLA 280
Query: 177 QSQGFQXXXXX------XXXXXXXDADEVFCTGTAVVVSPVGSITY 216
GF + EVF GTA V++PV + +
Sbjct: 281 IDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVARVRH 326
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 113/219 (51%), Gaps = 6/219 (2%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG-SLYIRPLLMGSGAVLGLAP 60
RM++ R+ MP S EQF++A V AN+ ++PP G G SLY+RP ++G G +G+
Sbjct: 100 RMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRT 159
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
APE+ F ++ PVG YFK G+ P N + + RA P GTG K GNY
Sbjct: 160 APEFIFSVFCVPVGPYFKGGLTPTNFITS-DYDRAAPHGTGAAKVGGNYAASLLPGYEAK 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVV--KGNVISTPAIKGTILPGITRKSIIDVAQS 178
++DV+YLD +EE + N F + G TP +ILP IT+ S++ +A+
Sbjct: 219 KRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTPQ-SPSILPSITKYSLLWLAEH 277
Query: 179 Q-GFQXXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITY 216
+ G + E GTA V++P+G I +
Sbjct: 278 RLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQH 316
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 112/228 (49%), Gaps = 14/228 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+C+PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 216
AQ+ G F+ A EVF +GTA V+PV I Y
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVAPVHRILY 325
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 112/228 (49%), Gaps = 14/228 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+C+PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 216
AQ+ G F+ A EVF +GTA V+PV I Y
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVAPVHRILY 325
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 108/231 (46%), Gaps = 14/231 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R +P E+ +E ++ V ++ W+P S SLYIRP +G+ LG+
Sbjct: 99 RMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPAFIGTEPSLGVKKP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + +SPVG YF G P++L + RA GGTG K GNY
Sbjct: 159 TKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEDV 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + EV + N+F+ N ++TP + G ILPG+TR+ I+D+
Sbjct: 219 DNGCQQVLWL-YGRDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDL 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITYLGK 219
A G F+ A E+F +GTA VV PV I Y G+
Sbjct: 278 AHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACVVCPVSDILYKGE 328
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 14/228 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+C+PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 216
AQ+ G F+ A EVF +GTA V PV I Y
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVCPVHRILY 325
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 14/228 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+C+PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 216
AQ+ G F+ A EVF +GTA V PV I Y
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILY 325
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 108/231 (46%), Gaps = 14/231 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R +P E+ +E ++ V ++ W+P S SLYIRP +G+ LG+
Sbjct: 119 RMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKP 178
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + +SPVG YF G P++L + RA GGTG K GNY
Sbjct: 179 TKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAV 238
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + EV + N+F+ N ++TP + G ILPG+TR+ I+D+
Sbjct: 239 DNGCQQVLWL-YGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDL 297
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITYLGK 219
A G F+ A E+F +GTA VV PV I Y G+
Sbjct: 298 AHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGE 348
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 110/228 (48%), Gaps = 14/228 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+ +PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 216
AQ+ G F+ A EVF +GTA V PV I Y
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILY 325
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 14/228 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+ +PS + +E ++ + +K W+P + SL +RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLXVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXXXX 120
+ + PVG YF G + P++L+ + RA GG G K GNY
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 XXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQXXXXXXXXXXXXDA------DEVFCTGTAVVVSPVGSITY 216
AQ+ G F+ A EVF +GTA V PV I Y
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILY 325
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 13/205 (6%)
Query: 14 SPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYT--FLIYVS 71
S S+++ +EA + + N S YIRPL+ +G+ P Y+ +I
Sbjct: 72 SQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 124
Query: 72 PVGNYF-KEGIAPINLVVEHELHRATPGGT-GGVKTIGNYXXXXXXXXXXXXXGYSDVLY 129
P G Y E + + +RA P K GNY GY + +
Sbjct: 125 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIA 184
Query: 130 LDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXX 189
LD Y+ E + N+F VK V+ TP + LPGITR +II +A+ G +
Sbjct: 185 LDV--NGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLS 242
Query: 190 XXXXXDADEVFCTGTAVVVSPVGSI 214
ADEVF +GTA ++PV S+
Sbjct: 243 RESLYLADEVFMSGTAAEITPVRSV 267
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 13/205 (6%)
Query: 14 SPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYT--FLIYVS 71
S S+++ +EA + + N S YIRPL+ +G+ P Y+ +I
Sbjct: 73 SQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 125
Query: 72 PVGNYF-KEGIAPINLVVEHELHRATPGGT-GGVKTIGNYXXXXXXXXXXXXXGYSDVLY 129
P G Y E + + +RA P K GNY GY + +
Sbjct: 126 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIA 185
Query: 130 LDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXX 189
LD Y+ E + N+F VK V+ TP + LPGITR +II +A+ G +
Sbjct: 186 LDV--NGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLS 243
Query: 190 XXXXXDADEVFCTGTAVVVSPVGSI 214
ADEVF +GTA ++PV S+
Sbjct: 244 RESLYLADEVFMSGTAAEITPVRSV 268
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 93/214 (43%), Gaps = 19/214 (8%)
Query: 9 RMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLI 68
RM +P + E+ EA+K V N G S YIRPL LG+ P P +
Sbjct: 68 RMEIPF-APEELEEAIKEVVRRN-------GYRSCYIRPLAWMGAKALGVNPLPNNPAEV 119
Query: 69 YVS--PVGNYF-KEGIAPINLVVEHELHRATPGGT--GGVKTIGNYXXXXXXXXXXXXXG 123
V+ G Y +E + ++ R P G K GNY G
Sbjct: 120 MVAAWEWGAYLGEEAVRKGARLITSSWAR-FPANVMPGKAKVGGNYVNSALAKMEAVAAG 178
Query: 124 YSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTI-LPGITRKSIIDVAQSQGFQ 182
+ L LD + Y+ E S N+F V+ VI A++ ++ L GITR S+I +A+ G++
Sbjct: 179 ADEALLLD--EEGYVAEGSGENLFFVRDGVIY--ALEHSVNLEGITRDSVIRIAKDLGYE 234
Query: 183 XXXXXXXXXXXXDADEVFCTGTAVVVSPVGSITY 216
ADEVF TGTA V+PV I +
Sbjct: 235 VQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDW 268
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 84/213 (39%), Gaps = 12/213 (5%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGL-AP 60
R+ A+ M P ++ +EA + V+ + S Y+RP++ LG+ A
Sbjct: 83 RLLNSAKIFQMDVPFDQETLEAAQRDVVRENK------LESCYLRPIIWIGSEKLGVSAK 136
Query: 61 APEYTFLIYVSPVGNYF-KEGIAP-INLVVEHELHRATPGGTGGVKTIGNYXXXXXXXXX 118
I P G Y +EG+A I + K G Y
Sbjct: 137 GNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQE 196
Query: 119 XXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQS 178
GY + L LD Y+ E S N F+V + TP + + L GITR ++I +A+
Sbjct: 197 ATADGYDEALLLDV--DGYVSEGSGENFFLVNRGKLYTPDL-ASCLDGITRDTVITLAKE 253
Query: 179 QGFQXXXXXXXXXXXXDADEVFCTGTAVVVSPV 211
G + ADE F TGTA V+P+
Sbjct: 254 AGIEVIEKRITRDEVYTADEAFFTGTAAEVTPI 286
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 40 KGSLY---IRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRAT 96
K +LY I+ +L G A GLA + + LI+ NY + P+ L+ + L R
Sbjct: 78 KDNLYHGGIKAILSGGPASRGLAERGQVSQLIF--QTFNYSIQK-HPVRLISINWL-RDK 133
Query: 97 PGGTGGVKTIGNYXXXXXXXXXXXXXGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIST 156
+ ++ NY G D L+ + + ++ E + N+F+++ N++ T
Sbjct: 134 ANPLYQLXSV-NYLEAIIAQRQAIAVGADDALFFNT--ENHVTETTCANLFLIENNILYT 190
Query: 157 PAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFCTGT 204
P ++ ILPGITR +I Q DAD VF T +
Sbjct: 191 PRVEDGILPGITRARLISHCQQHKXSVQEISLTKKRIEDADAVFLTNS 238
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 140 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 199
E S N+F+VK + TP++ IL GITR+++I +A+S +ADE
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEX 235
Query: 200 FCTGTAVVVSPVGSIT 215
F T T+ V PV +
Sbjct: 236 FLTHTSAGVVPVRRLN 251
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 123 GYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ 182
G+ DV++ D R LE +S + KG+ I TP+ G ILPG T+ ++ A +G++
Sbjct: 204 GFDDVIFTDG--DRVLEGATST-VVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWR 260
Query: 183 XXXXXXXXXXXXDADEVF 200
AD V+
Sbjct: 261 CKEKDLSIDDLFGADSVW 278
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%)
Query: 140 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 199
E SS N+F +K ++ T IL GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 200 FCTGTAVVVSPVGSI 214
F T T ++PV I
Sbjct: 237 FVTSTTSEITPVIEI 251
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%)
Query: 140 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 199
E SS N+F +K ++ T IL GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 200 FCTGTAVVVSPVGSI 214
F T T ++PV I
Sbjct: 237 FVTSTTSEITPVIEI 251
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 31/75 (41%)
Query: 140 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 199
E SS N+F +K ++ T IL GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 200 FCTGTAVVVSPVGSI 214
F T T ++PV I
Sbjct: 237 FVTSTTSEITPVIEI 251
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%)
Query: 142 SSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFC 201
SS N+F +K ++ T IL GITR +I A DE+F
Sbjct: 179 SSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFV 238
Query: 202 TGTAVVVSPVGSI 214
T T ++PV I
Sbjct: 239 TSTTSEITPVIEI 251
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%)
Query: 142 SSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEVFC 201
SS N+F +K ++ T IL GITR +I A DE+F
Sbjct: 179 SSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFV 238
Query: 202 TGTAVVVSPVGSI 214
T T ++PV I
Sbjct: 239 TSTTSEITPVIEI 251
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 137 YLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDA 196
++ E + N+F KGNV+ TP + + GI R+ I + +Q A
Sbjct: 170 WVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQA 229
Query: 197 DEVFCTGTAVVVSPV 211
DE+ + V PV
Sbjct: 230 DEMVICNALMPVMPV 244
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 30/75 (40%)
Query: 140 EVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQXXXXXXXXXXXXDADEV 199
E SS N+F +K ++ T I GITR +I A DE+
Sbjct: 177 EGSSSNVFGIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDEL 236
Query: 200 FCTGTAVVVSPVGSI 214
F T T ++PV I
Sbjct: 237 FVTSTTSEITPVIEI 251
>pdb|1P8A|A Chain A, Solution Structure Of The Low Molecular Weight Protein
Tyrosine Phosphatase From Tritrichomonas Foetus
Length = 146
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 146 IFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ 182
+FV GN+ +PA +G + K IID A + GF
Sbjct: 8 LFVCLGNICRSPACEGICRDMVGDKLIIDSAATSGFH 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,027,274
Number of Sequences: 62578
Number of extensions: 232214
Number of successful extensions: 468
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 36
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)