Query 027646
Match_columns 220
No_of_seqs 212 out of 1339
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 13:03:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02259 branched-chain-amino- 100.0 2.6E-50 5.7E-55 350.6 27.4 219 1-219 132-350 (388)
2 PLN02883 Branched-chain amino 100.0 5.2E-50 1.1E-54 348.0 27.3 219 1-219 128-346 (384)
3 PLN02782 Branched-chain amino 100.0 1.3E-49 2.8E-54 347.8 27.6 218 1-218 146-363 (403)
4 PLN03117 Branched-chain-amino- 100.0 7.3E-47 1.6E-51 327.0 27.9 217 1-218 96-312 (355)
5 cd01557 BCAT_beta_family BCAT_ 100.0 1.1E-46 2.3E-51 317.2 27.5 215 1-218 39-254 (279)
6 PRK13357 branched-chain amino 100.0 2.2E-46 4.8E-51 324.5 26.9 217 1-217 92-315 (356)
7 TIGR01122 ilvE_I branched-chai 100.0 2.6E-46 5.7E-51 317.6 26.0 207 1-217 50-262 (298)
8 TIGR01123 ilvE_II branched-cha 100.0 7.7E-46 1.7E-50 316.7 26.2 213 1-215 51-271 (313)
9 PRK06606 branched-chain amino 100.0 2.9E-45 6.3E-50 312.2 25.8 207 1-217 59-270 (306)
10 PRK12479 branched-chain amino 100.0 3.2E-45 7E-50 311.0 25.1 203 1-217 52-262 (299)
11 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 1.1E-44 2.4E-49 301.2 26.2 207 1-218 29-239 (256)
12 PRK13356 aminotransferase; Pro 100.0 8.9E-45 1.9E-49 306.5 26.0 205 1-217 55-263 (286)
13 KOG0975 Branched chain aminotr 100.0 1.6E-45 3.5E-50 309.2 21.2 217 1-218 120-339 (379)
14 PRK07544 branched-chain amino 100.0 7.2E-45 1.6E-49 307.9 25.2 206 1-217 57-267 (292)
15 PRK08320 branched-chain amino 100.0 1E-44 2.2E-49 306.5 25.9 203 1-217 51-261 (288)
16 cd01559 ADCL_like ADCL_like: 4 100.0 1.3E-44 2.7E-49 300.0 24.2 203 1-217 29-234 (249)
17 PRK07650 4-amino-4-deoxychoris 100.0 2.4E-44 5.2E-49 303.5 25.8 203 1-217 48-254 (283)
18 TIGR03461 pabC_Proteo aminodeo 100.0 5.3E-44 1.2E-48 298.2 24.3 204 1-217 42-248 (261)
19 PRK06092 4-amino-4-deoxychoris 100.0 1.2E-43 2.5E-48 297.2 24.7 204 1-217 44-250 (268)
20 cd01558 D-AAT_like D-Alanine a 100.0 2.3E-43 5E-48 295.7 25.0 200 1-217 46-252 (270)
21 PRK12400 D-amino acid aminotra 100.0 2.4E-43 5.2E-48 298.4 25.1 200 1-217 55-260 (290)
22 PRK07849 4-amino-4-deoxychoris 100.0 8.6E-43 1.9E-47 295.0 25.3 201 1-217 60-269 (292)
23 PLN02845 Branched-chain-amino- 100.0 1.8E-42 3.8E-47 297.9 25.6 203 1-217 89-300 (336)
24 COG0115 IlvE Branched-chain am 100.0 2E-42 4.4E-47 291.8 25.3 208 1-217 50-261 (284)
25 PRK06680 D-amino acid aminotra 100.0 4.1E-42 8.8E-47 290.3 25.6 199 1-217 51-259 (286)
26 TIGR01121 D_amino_aminoT D-ami 100.0 4.3E-42 9.4E-47 288.8 25.4 199 1-217 48-253 (276)
27 PRK09266 hypothetical protein; 100.0 3.5E-41 7.6E-46 281.9 22.7 196 1-217 46-242 (266)
28 PF01063 Aminotran_4: Aminotra 100.0 2.3E-41 5E-46 277.0 19.6 205 1-218 8-217 (231)
29 PRK07546 hypothetical protein; 100.0 4.7E-39 1E-43 260.1 22.1 183 1-214 26-209 (209)
30 PRK07101 hypothetical protein; 100.0 6.7E-29 1.5E-33 197.3 17.7 162 1-208 24-187 (187)
31 TIGR00829 FRU PTS system, fruc 67.5 12 0.00025 25.7 4.1 32 174-205 22-62 (85)
32 cd05569 PTS_IIB_fructose PTS_I 66.0 13 0.00028 26.0 4.2 35 171-205 20-63 (96)
33 PRK10474 putative PTS system f 63.9 14 0.00031 25.3 4.0 36 170-205 4-48 (88)
34 COG1445 FrwB Phosphotransferas 53.4 27 0.00058 25.7 4.0 35 170-204 22-65 (122)
35 PF13051 DUF3912: Protein of u 51.6 13 0.00028 23.4 1.9 38 143-180 31-68 (68)
36 PRK10427 putative PTS system f 49.2 33 0.00072 24.8 4.1 33 173-205 26-67 (114)
37 KOG3442 Uncharacterized conser 47.1 45 0.00097 24.6 4.4 40 3-46 58-98 (132)
38 COG2257 Uncharacterized homolo 43.0 18 0.00039 25.1 1.7 32 165-196 30-61 (92)
39 PF09778 Guanylate_cyc_2: Guan 37.9 43 0.00093 27.2 3.4 26 170-195 93-118 (212)
40 PRK06683 hypothetical protein; 37.8 51 0.0011 22.3 3.3 33 167-200 40-72 (82)
41 PRK13602 putative ribosomal pr 37.2 56 0.0012 22.0 3.5 30 167-197 40-69 (82)
42 COG1935 Uncharacterized conser 36.6 38 0.00082 24.6 2.6 43 163-206 5-52 (122)
43 PRK03972 ribosomal biogenesis 35.2 2.4E+02 0.0052 22.8 8.2 88 117-208 43-164 (208)
44 cd01712 ThiI ThiI is required 31.9 73 0.0016 24.4 3.9 65 114-186 94-161 (177)
45 PRK13601 putative L7Ae-like ri 31.2 82 0.0018 21.4 3.5 31 166-197 36-66 (82)
46 PF03683 UPF0175: Uncharacteri 30.9 39 0.00085 22.4 1.9 29 163-194 42-70 (76)
47 PF14542 Acetyltransf_CG: GCN5 28.0 86 0.0019 20.8 3.2 32 153-184 28-59 (78)
48 PF00356 LacI: Bacterial regul 27.6 45 0.00097 19.9 1.5 20 162-181 24-43 (46)
49 PRK11404 putative PTS system 27.4 94 0.002 28.5 4.2 31 174-204 28-67 (482)
50 PRK01018 50S ribosomal protein 27.3 1E+02 0.0022 21.6 3.5 34 165-198 43-76 (99)
51 PTZ00106 60S ribosomal protein 26.4 1E+02 0.0022 22.0 3.5 35 164-198 51-85 (108)
52 PF04322 DUF473: Protein of un 26.4 65 0.0014 23.6 2.4 43 163-206 5-52 (119)
53 PF04755 PAP_fibrillin: PAP_fi 25.3 64 0.0014 25.2 2.5 28 121-150 171-198 (198)
54 KOG2708 Predicted metalloprote 25.1 40 0.00086 27.9 1.3 38 152-193 30-71 (336)
55 TIGR00853 pts-lac PTS system, 25.0 1.8E+02 0.004 20.0 4.5 38 165-202 16-57 (95)
56 PF09954 DUF2188: Uncharacteri 24.9 1.6E+02 0.0034 18.4 3.8 28 112-141 32-59 (62)
57 PRK03767 NAD(P)H:quinone oxido 24.7 1.7E+02 0.0037 23.0 4.9 40 166-205 13-79 (200)
58 TIGR00789 flhB_rel flhB C-term 24.2 82 0.0018 21.4 2.5 30 165-194 25-54 (82)
59 cd03079 GST_N_Metaxin2 GST_N f 24.1 88 0.0019 20.7 2.6 55 153-216 2-58 (74)
60 PF11547 E3_UbLigase_EDD: E3 u 24.0 46 0.001 20.2 1.1 22 162-183 18-39 (53)
61 PRK03430 hypothetical protein; 23.2 46 0.001 25.6 1.3 31 160-194 94-124 (157)
62 cd05564 PTS_IIB_chitobiose_lic 22.9 2.2E+02 0.0047 19.6 4.6 41 162-202 9-53 (96)
63 PF04361 DUF494: Protein of un 22.6 56 0.0012 25.1 1.6 31 160-194 92-122 (155)
64 cd01749 GATase1_PB Glutamine A 22.2 1.4E+02 0.0031 23.1 3.9 41 164-206 6-46 (183)
65 PF05194 UreE_C: UreE urease a 21.0 2.2E+02 0.0048 19.2 4.2 33 148-190 30-62 (87)
66 PF02037 SAP: SAP domain; Int 20.4 1.7E+02 0.0037 16.1 3.6 24 3-26 9-33 (35)
67 PRK08349 hypothetical protein; 20.3 92 0.002 24.5 2.5 60 114-181 96-158 (198)
No 1
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=2.6e-50 Score=350.58 Aligned_cols=219 Identities=72% Similarity=1.188 Sum_probs=200.2
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccCC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (220)
+||.+||++|+||.|+.++|.+.+.++++.|+.|+|+.+.+.+|+|++++|+++.+|+.++..+++++++.|.++++..|
T Consensus 132 ~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g 211 (388)
T PLN02259 132 IRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEG 211 (388)
T ss_pred HHHHHhHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcC
Confidence 59999999999998889999999999999999888876667899999888877667887767788999999988777778
Q ss_pred ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcCCCC
Q 027646 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIK 160 (220)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP~l~ 160 (220)
++++++.+.+++.|..|..++++|+++||+++++++++|+++|+||+||+|..++|+|+|++++|+|++++++|+||+++
T Consensus 212 ~~~i~l~v~~~~~Ra~p~~~g~~K~~~NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~ 291 (388)
T PLN02259 212 MAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATN 291 (388)
T ss_pred cceEEEEeecceeccCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEEEEEECCEEEcCCCc
Confidence 87777776666789888888999998899999999999999999999999953479999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeCCC
Q 027646 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGK 219 (220)
Q Consensus 161 ~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~~~ 219 (220)
.+||+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||+.+|+||++|+++++
T Consensus 292 ~~iL~GITR~sIl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~~~ 350 (388)
T PLN02259 292 GTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEK 350 (388)
T ss_pred CCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEEEEcCCcceEEEEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999998654
No 2
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=5.2e-50 Score=348.02 Aligned_cols=219 Identities=65% Similarity=1.043 Sum_probs=200.1
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccCC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (220)
+||.+||++|+||.++.++|.+.+.++++.|+.|+|+.+.+.+|||++++|+++.+|+.++..++++|++.|+++++..|
T Consensus 128 ~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~wvp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g 207 (384)
T PLN02883 128 MRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEG 207 (384)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccC
Confidence 49999999999998889999999999999999888876667899999998887778887777889999999998877778
Q ss_pred ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcCCCC
Q 027646 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIK 160 (220)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP~l~ 160 (220)
++++++.+...++|..+..++++|+++||+++++++++|+++|+||+||+|.+++|+|+|++++|||++++++|+||+++
T Consensus 208 ~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~lla~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l~TP~l~ 287 (384)
T PLN02883 208 TAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATS 287 (384)
T ss_pred cceEEEEECccccccCCCCCcccchhhhHHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCc
Confidence 77888877656678888889999999899999999999999999999999962247999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeCCC
Q 027646 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGK 219 (220)
Q Consensus 161 ~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~~~ 219 (220)
.+||+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+|+++++
T Consensus 288 ~~iLpGITR~svl~la~~~G~~V~Er~i~~~eL~~AdEvF~tgTa~~I~PV~~I~~~~~ 346 (384)
T PLN02883 288 GTILGGITRKSIIEIALDLGYKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNT 346 (384)
T ss_pred CCcCcCHHHHHHHHHHHHCCCeEEEEECCHHHHHhCCEeeeccChhheEEEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999997753
No 3
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=1.3e-49 Score=347.80 Aligned_cols=218 Identities=90% Similarity=1.395 Sum_probs=198.8
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccCC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (220)
+||.+||++|+|+.++.++|.+++.++++.|+.|+|+.+.+.+|||++++|+++.+|+.++.++++++++.|.+.++..|
T Consensus 146 ~RL~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~~~~g 225 (403)
T PLN02782 146 IRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 225 (403)
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECccccccC
Confidence 59999999999998889999999999999999888876667899999888877778887777788999999988777678
Q ss_pred ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcCCCC
Q 027646 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIK 160 (220)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP~l~ 160 (220)
++++++.+..+++|..|..++++|+++||+++++++++|+++|+||+||+|..++|+|+|++++|||++++++|+||+++
T Consensus 226 ~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~ 305 (403)
T PLN02782 226 VAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIK 305 (403)
T ss_pred CccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEcCCCc
Confidence 77888877666889988889999998899999999999999999999999942279999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeCC
Q 027646 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 161 ~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~~ 218 (220)
.+||+||||+.||++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+|++.+
T Consensus 306 ~~iLpGITR~svlela~~~Gi~V~Er~i~~~eL~~AdEvF~tgTa~~V~PV~~I~~~g 363 (403)
T PLN02782 306 GTILPGITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKG 363 (403)
T ss_pred CCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEccCcceEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999995443
No 4
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=7.3e-47 Score=327.05 Aligned_cols=217 Identities=64% Similarity=1.086 Sum_probs=186.7
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccCC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (220)
+||++||++|+|+.|+.++|.+.+.+++++|+.+++....+.+|+|++++|+++.+|+.+.+.+.+++++.|.+.++. .
T Consensus 96 ~RL~~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~-~ 174 (355)
T PLN03117 96 LRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHK-A 174 (355)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEecccccc-C
Confidence 599999999999988899999999999999986555444567899988877665667666556778888888754332 1
Q ss_pred ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcCCCC
Q 027646 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIK 160 (220)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP~l~ 160 (220)
.+++++.+.+.++|..++.++++|+++||+++++++++|+++|+||+||+|..++|+|+|++++|||+++|++|+||+++
T Consensus 175 ~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l~TP~l~ 254 (355)
T PLN03117 175 SSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTS 254 (355)
T ss_pred CCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCc
Confidence 24566665444677777788999997689999999999999999999999962136999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeCC
Q 027646 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 161 ~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~~ 218 (220)
.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||+.+|+||.+|++.+
T Consensus 255 ~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~eL~~AdEvFltnT~~~I~PV~~i~~~~ 312 (355)
T PLN03117 255 GTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHD 312 (355)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEccHHHHhhCCEEEEccCcceEEEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999998764
No 5
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=1.1e-46 Score=317.16 Aligned_cols=215 Identities=49% Similarity=0.846 Sum_probs=183.4
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccCC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (220)
+||.+||+.|+|+.++.+++.+.+.+++++|+.+.|+......|||++++++.+.+|+.++..+++++++.|+++++...
T Consensus 39 ~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 118 (279)
T cd01557 39 ERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGG 118 (279)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCEEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCC
Confidence 59999999999994489999999999999987654443345789998887665556776555678888888876544322
Q ss_pred ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCC-ceEEEcCceEEEEEECCEEEcCCC
Q 027646 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHK-RYLEEVSSCNIFVVKGNVISTPAI 159 (220)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~-g~v~E~~~sNif~~~~~~l~TP~l 159 (220)
..++++.+. +++|..+..++.+|++.||+.+++++++|+++|+||+||+|+ + |+|+|++++||||+++|+|+||++
T Consensus 119 ~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~g~de~l~ld~--~~g~v~E~~~sNlf~v~~~~l~TP~~ 195 (279)
T cd01557 119 EKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDG--AHGYVAEVGTMNIFFVKDGELITPPL 195 (279)
T ss_pred CCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHCCCCEEEEEcC--CCCEEEEeCcEEEEEEECCEEEcCCC
Confidence 234556554 467777755678997569999999999999999999999998 7 999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeCC
Q 027646 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~~ 218 (220)
+.++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++|+++.
T Consensus 196 ~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~ 254 (279)
T cd01557 196 DGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRG 254 (279)
T ss_pred cCCCCCchHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEcccc
Confidence 98999999999999999999999999999999999999999999999999999998853
No 6
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=2.2e-46 Score=324.48 Aligned_cols=217 Identities=46% Similarity=0.802 Sum_probs=185.1
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcC-CCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWI-PPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (220)
+||.+||+.|+|+.++.++|.+.+.+++++|+.+. +....+.+|+|++++++++.+|+.+...+++++++.|+++++..
T Consensus 92 ~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~ 171 (356)
T PRK13357 92 KRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKG 171 (356)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEechhhccc
Confidence 59999999999986689999999999999987422 11123578999888766555677655568888888887655544
Q ss_pred CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcCCC
Q 027646 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAI 159 (220)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP~l 159 (220)
+.+++++.+...+.|..++.++++||..||+.+++++++|+++|+||+||+|++++|+|+|++++||||+++++|+|||+
T Consensus 172 ~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~l~TPpl 251 (356)
T PRK13357 172 GVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPL 251 (356)
T ss_pred CCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEEECCEEEECCC
Confidence 55566666554567888877899999548999999999999999999999994127999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEecCHHH------HhccceeeeecCcceeEEeEEEeeC
Q 027646 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEE------LLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~e------L~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+.+||+||||+.|+++|+++|++|+|+.++++| |.+|||+|+|||+.||+||++|+++
T Consensus 252 ~~giL~GItR~~vlela~~~Gi~v~e~~i~~~el~~~~~L~~AdevFltnS~~gi~PV~~id~~ 315 (356)
T PRK13357 252 SGSILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYK 315 (356)
T ss_pred CCCCCcchHHHHHHHHHHHCCCeEEEEecCHHHhhhhhccCcceEEEEcccccEEEEEEEEEeC
Confidence 999999999999999999999999999999999 8999999999999999999999854
No 7
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=2.6e-46 Score=317.59 Aligned_cols=207 Identities=37% Similarity=0.550 Sum_probs=177.2
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCcccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (220)
+||.+||+.|+|+.| +.+++.+.+.+++++++. ...|||++++++.+.+|+.++ ..|++++++.|++.++
T Consensus 50 ~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~ 122 (298)
T TIGR01122 50 QRLYDSAKIYRMEIPYSKEELMEATRETLRKNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYL 122 (298)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEecccccc
Confidence 599999999999977 799999999999998863 357899888766556777653 3678888888765432
Q ss_pred cCC--ccceEEEeecceeecCCCCC-CCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEE
Q 027646 78 KEG--IAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVI 154 (220)
Q Consensus 78 ~~g--~~~~~l~~~~~~~r~~~~~l-~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l 154 (220)
... .+++++.+. +++|..+..+ +++||+|||+.++++.++|+++|+||+||+|+ +|+|+|+++|||||+++|+|
T Consensus 123 ~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K~~~~yl~~v~a~~~a~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l 199 (298)
T TIGR01122 123 GEEALEKGIDAKVS-SWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSGENIFIVKDGVL 199 (298)
T ss_pred CcccccCCeEEEEE-EEEcCCCCCcCccchhhhhhHHHHHHHHHHHHcCCCEEEEECC--CCCEEECCceEEEEEECCEE
Confidence 110 124556554 4567666555 89999866999999999999999999999998 89999999999999999999
Q ss_pred EcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 155 STPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 155 ~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+||+++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||++||++
T Consensus 200 ~TP~~~~~~L~GItR~~il~la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~id~~ 262 (298)
T TIGR01122 200 FTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREVDGR 262 (298)
T ss_pred ECCCCCCCcCcchHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECCE
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 8
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=7.7e-46 Score=316.67 Aligned_cols=213 Identities=47% Similarity=0.852 Sum_probs=181.4
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCC-CCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPP-SGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (220)
+||.+||++|+|+.++.++|.+.+.+++++|+.+.+. ...+.+|+|++++++++.+|+.+.+.+.+++++.|++.++..
T Consensus 51 ~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~ 130 (313)
T TIGR01123 51 ARLRRSARRLLMPELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKG 130 (313)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhccc
Confidence 5999999999998778999999999999998743221 113478999888776656777665567888888887655555
Q ss_pred CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCce--EEEcCceEEEEEEC-CEEEc
Q 027646 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRY--LEEVSSCNIFVVKG-NVIST 156 (220)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~--v~E~~~sNif~~~~-~~l~T 156 (220)
|+.++++.+...+.|..+..++++||..||+.+++++++|+++|+||+||+|+ +|+ |+|++++||||+++ |+|+|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~g~deal~ld~--~g~g~v~E~~~sNlf~v~~~g~l~T 208 (313)
T TIGR01123 131 GLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDP--VEHTYIEEVGAMNFFFITGDGELVT 208 (313)
T ss_pred cccceeEEecccceecCCCCCccceeccccHHHHHHHHHHHHCCCCEEEEEeC--CCCeEEEEcCcEeEEEEEcCCEEEe
Confidence 65555554434567777776899999558999999999999999999999998 655 99999999999985 79999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhcc----ceeeeecCcceeEEeEEEe
Q 027646 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDA----DEVFCTGTAVVVSPVGSIT 215 (220)
Q Consensus 157 P~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~a----de~f~tns~~gi~pV~~i~ 215 (220)
||++.++|+||||+.|+++|+++|++|+|++++++||.+| ||+|+|||++||+||++|+
T Consensus 209 p~l~~~~L~GItR~~vi~l~~~~Gi~v~e~~i~~~~l~~A~~~~devfltnS~~gi~PV~~i~ 271 (313)
T TIGR01123 209 PPLSGSILPGITRDSLLQLAKDLGMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQ 271 (313)
T ss_pred CCCCCCCCcchHHHHHHHHHHHcCCeEEEEecCHHHHHHHHhcCCEEEEccCceEEEEEEEEE
Confidence 9999999999999999999999999999999999999999 9999999999999999994
No 9
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=2.9e-45 Score=312.20 Aligned_cols=207 Identities=36% Similarity=0.548 Sum_probs=176.3
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC-CCeeEEEEEecCccccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA-PEYTFLIYVSPVGNYFK 78 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~-~~~~~~i~~~p~~~~~~ 78 (220)
+||.+||+.|+|+.| +.+++.+.+.+++++++. ...|+|++++++.+.+|+.+. ..+++++++.|++.++.
T Consensus 59 ~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~ 131 (306)
T PRK06606 59 KRLFNSAKILRMEIPYSVDELMEAQREVVRKNNL-------KSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLG 131 (306)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccC
Confidence 599999999999987 789999999999999863 367899888766555677654 35677788877654321
Q ss_pred -CCc-cceEEEeecceeecCCCC-CCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEE
Q 027646 79 -EGI-APINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS 155 (220)
Q Consensus 79 -~g~-~~~~l~~~~~~~r~~~~~-l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~ 155 (220)
.+. +++++.+. ++.|..+.. ++++|++.||+.+++++++|+++|+||+||+|+ +|+|+|++++||||+++|+|+
T Consensus 132 ~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~G~de~l~l~~--~g~v~E~~~sNlf~v~~~~l~ 208 (306)
T PRK06606 132 EEALEKGIRVKVS-SWTRHAPNSIPTRAKASGNYLNSILAKTEARRNGYDEALLLDV--EGYVSEGSGENIFIVRDGVLY 208 (306)
T ss_pred cccccCCeEEEEe-eEecCCCCCcCcchhhhhccHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEE
Confidence 111 24555554 456666555 478997669999999999999999999999998 999999999999999999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 156 TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
||+++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++||++
T Consensus 209 TP~~~~giL~GitR~~vl~~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~id~~ 270 (306)
T PRK06606 209 TPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREVDGR 270 (306)
T ss_pred CCCCcCCcCCCHHHHHHHHHHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECcE
Confidence 99999999999999999999999999999999999999999999999999999999999864
No 10
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=3.2e-45 Score=310.95 Aligned_cols=203 Identities=30% Similarity=0.428 Sum_probs=174.2
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCcc--
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGN-- 75 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~-- 75 (220)
+||++||+.|+|+.| +.+++.+.+.+++++++. ...|||++++++++.+|+.+. ..|++++++.|++.
T Consensus 52 ~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~ 124 (299)
T PRK12479 52 KRLYESAKSILLTIPLTVDEMEEAVLQTLQKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFP 124 (299)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCC
Confidence 599999999999887 799999999999998763 356888888765556777654 36788888887642
Q ss_pred --cccCCccceEEEeecceeecCCCCC-CCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECC
Q 027646 76 --YFKEGIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN 152 (220)
Q Consensus 76 --~~~~g~~~~~l~~~~~~~r~~~~~l-~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~ 152 (220)
++.+|++ +.+. .+.|..++.+ +++||. ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|
T Consensus 125 ~~~~~~gv~---~~~~-~~~r~~~~~~~~~~K~~-nyl~~vla~~ea~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~ 197 (299)
T PRK12479 125 QEFYDNGLS---VVSV-ASRRNTPDALDPRIKSM-NYLNNVLVKIEAAQAGVLEALMLNQ--QGYVCEGSGDNVFVVKDG 197 (299)
T ss_pred hhHHhCCeE---EEEE-eEeccCCCccCccchhh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECC
Confidence 2344543 3333 3566666555 689996 8999999999999999999999998 899999999999999999
Q ss_pred EEEcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 153 VISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 153 ~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+|+||+++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++||++
T Consensus 198 ~l~TP~l~~giL~GItR~~il~~~~~~g~~v~e~~i~~~~L~~adevfltnS~~gi~PV~~id~~ 262 (299)
T PRK12479 198 KVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPVVKVDSR 262 (299)
T ss_pred EEEeCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCeeeeecCcccEEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999863
No 11
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=1.1e-44 Score=301.23 Aligned_cols=207 Identities=44% Similarity=0.687 Sum_probs=173.4
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCC--CCCeeEEEEEecCcccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP--APEYTFLIYVSPVGNYF 77 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~--~~~~~~~i~~~p~~~~~ 77 (220)
+||.+||+.|+|+.+ +.+++.+.+.++++.++. ...++|++++++.+.+|+.+ ...|++++++.|++.+.
T Consensus 29 ~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (256)
T cd00449 29 DRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYA 101 (256)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEEEEEEecccccCCCCCCCCCcEEEEEEeeccccc
Confidence 599999999999954 899999999999998653 46788888876655566653 34678888888765420
Q ss_pred cCCccceEEEeecceeec-CCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEc
Q 027646 78 KEGIAPINLVVEHELHRA-TPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIST 156 (220)
Q Consensus 78 ~~g~~~~~l~~~~~~~r~-~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~T 156 (220)
.....++++.+... .|. .++.++++||+ +|+.+++++++|+++|+||+||+|+ +|+|+||+++||||+++|+|+|
T Consensus 102 ~~~~~g~~~~~~~~-~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g~de~llld~--~g~v~E~s~sNlf~~~~~~l~T 177 (256)
T cd00449 102 KGGEKGVRLITSPD-RRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAGADEALLLDD--NGYVTEGSASNVFIVKDGELVT 177 (256)
T ss_pred cccCCCeEEEEeee-EEeCCCCCCccchhh-CCHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCceEEEEEECCEEEe
Confidence 01113345555433 443 45568899997 7789999999999999999999997 8999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeCC
Q 027646 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 157 P~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~~ 218 (220)
|+++.|+|+||||+.++++|+++|++++|+.++++||.+|||+|+|||++||+||++|+++.
T Consensus 178 P~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~ 239 (256)
T cd00449 178 PPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRG 239 (256)
T ss_pred CCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCee
Confidence 99999999999999999999999999999999999999999999999999999999998763
No 12
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=8.9e-45 Score=306.54 Aligned_cols=205 Identities=28% Similarity=0.406 Sum_probs=168.5
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCcc-CCCCC-CCeeEEEEEecCcccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVL-GLAPA-PEYTFLIYVSPVGNYF 77 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~-g~~~~-~~~~~~i~~~p~~~~~ 77 (220)
+||.+||+.|+|+.| +.++|.+.+.+++++++. ....|||++++++.+.+ |+.++ ..+.+++...+.+...
T Consensus 55 ~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i~~~~~------~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (286)
T PRK13356 55 ARVNRSAEALGLKPTVSAEEIEALAREGLKRFDP------DTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPE 128 (286)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC------CCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCC
Confidence 599999999999866 899999999999998753 23578888776543323 34333 2344455554443222
Q ss_pred cCCccceEEEeecceeecCCCCC-CCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEc
Q 027646 78 KEGIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIST 156 (220)
Q Consensus 78 ~~g~~~~~l~~~~~~~r~~~~~l-~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~T 156 (220)
.. ++++.++ +++|..+..+ .++|+++||+.+++++++|+++|+||+||+|+ +|+|+|++++||||+++|+|+|
T Consensus 129 ~~---gv~l~~~-~~~r~~~~~~~~~~K~~~nyl~~vla~~ea~~~g~deal~ld~--~G~v~E~~~sNlf~v~~~~l~T 202 (286)
T PRK13356 129 PT---GFSLTLS-PFRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDM--LGNVAETATSNVFMVKDGVVFT 202 (286)
T ss_pred CC---cEEEEEe-eeecCCCCCCCccceeccchHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEEc
Confidence 23 4555554 4566655444 67898789999999999999999999999998 8999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 157 P~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
|+++.++|+||||+.|+++|++.|++|+|++++++||.+|||+|+|||++||+||++||++
T Consensus 203 P~~~~~~L~GItR~~vi~~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~id~~ 263 (286)
T PRK13356 203 PVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFDDR 263 (286)
T ss_pred CCCCCCcccCHHHHHHHHHHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 13
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=309.23 Aligned_cols=217 Identities=62% Similarity=0.993 Sum_probs=207.3
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccCC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (220)
+||.+||.++-||.|+.+++.+.+.+++..++.|+|+...+.+|+|+++.|++..+|..+.++++++++++|...|+..|
T Consensus 120 ~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~yf~~g 199 (379)
T KOG0975|consen 120 DRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPYFKSG 199 (379)
T ss_pred HHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchhcccc
Confidence 49999999999999999999999999999999999998889999999999998889988888999999999999999999
Q ss_pred ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCE--EEcCC
Q 027646 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV--ISTPA 158 (220)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~--l~TP~ 158 (220)
.+++.|.+.+.++|.+|....+.|+.+||+++++++.||+++|+.|+||||.+ +++|+|..+.|||++++|+ ++|||
T Consensus 200 ~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d-~~~ItEv~tmNiF~v~~n~~elvTPp 278 (379)
T KOG0975|consen 200 FKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGD-GGYITEVGTMNIFMVKKNEDELVTPP 278 (379)
T ss_pred ccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecC-CCceeeccceeEEEEEcCceeEecCC
Confidence 99999999888999999999999999999999999999999999999999972 3499999999999999998 99999
Q ss_pred CCCCCCCchHHHHHHHHHHhCC-CeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeCC
Q 027646 159 IKGTILPGITRKSIIDVAQSQG-FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 159 l~~~~L~GitR~~ll~~a~~~g-~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~~ 218 (220)
++.-|||||||+.++++|+++| ++|+||.++++|+.+|||+|.|+|...|.||..|.++|
T Consensus 279 ~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~e~~~A~Evf~tGTA~~v~pV~~i~~~~ 339 (379)
T KOG0975|consen 279 LDGTILPGVTRKSILELARDLGEFKVEERDVTVDELKTADEVFCTGTAAVVSPVGSILYKD 339 (379)
T ss_pred CCCcccCCccHHHHHHHHHHhCceEEEEEEEeHHHhhhhHhhhcccceeeeccccceeecc
Confidence 9999999999999999999999 99999999999999999999999999999999999987
No 14
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=7.2e-45 Score=307.94 Aligned_cols=206 Identities=34% Similarity=0.510 Sum_probs=171.6
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCC-CeeEEEEEecCccccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAP-EYTFLIYVSPVGNYFK 78 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~-~~~~~i~~~p~~~~~~ 78 (220)
+||++||+.|+|+.| +.+.+.+.+.++++.|+. ...+||++++++.+.+|+.++. .+.+++...+++.++.
T Consensus 57 ~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~ 129 (292)
T PRK07544 57 ERLRRSAELLDFEIPYSVAEIDAAKKETLAANGL-------TDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFD 129 (292)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccC
Confidence 599999999999987 789999999999999863 3568888887665556765443 4556666655543221
Q ss_pred --CCccceEEEeecceeecCCCCC-CCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEE
Q 027646 79 --EGIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS 155 (220)
Q Consensus 79 --~g~~~~~l~~~~~~~r~~~~~l-~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~ 155 (220)
.+.+++++.+. .++|..+..+ ..+|+.++|+.+++++++|+++|+||+||+|+ +|+|+|++++||||++||+|+
T Consensus 130 ~~~~~~gv~l~~~-~~~r~~~~~~~~~~k~~~~yl~~vla~~~A~~~G~deal~ld~--~g~V~E~~~sNlf~v~~~~l~ 206 (292)
T PRK07544 130 PEAKMKGIRLDIA-KWRRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDY--RGYVAEATGANIFFVKDGVIH 206 (292)
T ss_pred ccccCCCEEEEEe-EEEcCCCCCcCHhhhhhcccHHHHHHHHHHHHcCCCeEEEECC--CCCEEEcCceEEEEEECCEEE
Confidence 22345666654 4566655544 46688778999999999999999999999998 899999999999999999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 156 TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
||+++ ++|+||||+.|+++|+++|++|+|++++++||.+|||+|+|||++||+||++|+++
T Consensus 207 TP~~~-~~L~GItR~~vl~~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~~i~~~ 267 (292)
T PRK07544 207 TPTPD-CFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEIGEY 267 (292)
T ss_pred CCCCc-ccccchhHHHHHHHHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEEEEeeE
Confidence 99986 59999999999999999999999999999999999999999999999999999874
No 15
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1e-44 Score=306.48 Aligned_cols=203 Identities=33% Similarity=0.495 Sum_probs=172.4
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCccc-
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNY- 76 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~- 76 (220)
+||.+||+.|+|+.| +.+++.+.+.+++++++. ...+||++++++.+.+|+.+. ..|.+++++.|++.+
T Consensus 51 ~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (288)
T PRK08320 51 DRLYDSAKAIMLEIPLSKEEMTEIVLETLRKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYP 123 (288)
T ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCC
Confidence 599999999999877 789999999999998763 456888888766556777654 356677777665422
Q ss_pred ---ccCCccceEEEeecceeecCCCCC-CCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECC
Q 027646 77 ---FKEGIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN 152 (220)
Q Consensus 77 ---~~~g~~~~~l~~~~~~~r~~~~~l-~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~ 152 (220)
+.+|++ +... .+.|..++.+ +++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++||||+++|
T Consensus 124 ~~~~~~g~~---~~~~-~~~r~~~~~~~~~~K~~-nyl~~v~a~~~A~~~g~de~L~ld~--~g~v~E~s~sNlf~~~~~ 196 (288)
T PRK08320 124 GELYEKGLK---VITV-STRRNRPDALSPQVKSL-NYLNNILAKIEANLAGVDEAIMLND--EGYVAEGTGDNIFIVKNG 196 (288)
T ss_pred hhHHhcCeE---EEEE-eeeccCCCCcCccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCcEEEEEEECC
Confidence 334544 3333 3456655544 789997 8999999999999999999999998 899999999999999999
Q ss_pred EEEcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 153 VISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 153 ~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+|+|||++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++|+++
T Consensus 197 ~l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~e~~l~~~dL~~ade~f~~ns~~gv~pV~~i~~~ 261 (288)
T PRK08320 197 KLITPPTYAGALEGITRNAVIEIAKELGIPVREELFTLHDLYTADEVFLTGTAAEVIPVVKVDGR 261 (288)
T ss_pred EEECCCCcCCCCcCHHHHHHHHHHHHcCCeEEEEECCHHHHHhCCEEEEecChhhEEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 16
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=1.3e-44 Score=300.04 Aligned_cols=203 Identities=29% Similarity=0.478 Sum_probs=172.8
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCC--CCCeeEEEEEecCcc-cc
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP--APEYTFLIYVSPVGN-YF 77 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~--~~~~~~~i~~~p~~~-~~ 77 (220)
+||++||+.|+|+.++.+++++.+.++++.++. ...+||++++++++.+|+.+ ...|.+++++.|++. .+
T Consensus 29 ~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 101 (249)
T cd01559 29 ARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRLILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWR 101 (249)
T ss_pred HHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCHHHH
Confidence 599999999999944899999999999998763 35678877764444456543 346778888887653 22
Q ss_pred cCCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcC
Q 027646 78 KEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (220)
Q Consensus 78 ~~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP 157 (220)
.+| +++.+. ++.|..++.++++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+|+||
T Consensus 102 ~~g---v~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~de~l~l~~--~g~v~E~~~~Nif~~~~~~~~TP 174 (249)
T cd01559 102 QDG---VRLITC-PVRLGEQPLLAGLKHL-NYLENVLAKREARDRGADEALFLDT--DGRVIEGTASNLFFVKDGELVTP 174 (249)
T ss_pred hCC---cEEEEc-ccccCCCCCCCCcchh-hhHHHHHHHHHHHhcCCCEEEEEcC--CCCEEEecceEEEEEECCEEECC
Confidence 334 445554 3466566778999996 8999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 158 ~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+++.|+|+||||+.++++|+++|++++|+.++++||.+|||+|+|||++||+||++||+.
T Consensus 175 ~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~el~~ade~~~~ns~~gi~pV~~id~~ 234 (249)
T cd01559 175 SLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAIDDH 234 (249)
T ss_pred CcccCccccHHHHHHHHHHHHcCceEEEEecCHHHHhhCCEEEEecCccceeEEEEECCc
Confidence 999999999999999999999999999999999999999999999999999999999864
No 17
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=2.4e-44 Score=303.52 Aligned_cols=203 Identities=26% Similarity=0.365 Sum_probs=172.1
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCcccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (220)
+||++||+.|+|+.+ +.+++.+.+.+++++++. ...+||++++++.+.+++.+. ..|+++++..|+++..
T Consensus 48 ~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~ 120 (283)
T PRK07650 48 DRLNDALDTLQIEWTMTKDEVLLILKNLLEKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPG 120 (283)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCC
Confidence 599999999999986 789999999999988753 457888888665445566543 3678888888764321
Q ss_pred -cCCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEc
Q 027646 78 -KEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIST 156 (220)
Q Consensus 78 -~~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~T 156 (220)
......+.+ .++|..++.++++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+|+|
T Consensus 121 ~~~~~~~~~~----~~~~~~~~~~~~~Kt~-~y~~~v~a~~~a~~~g~de~llln~--~G~v~E~s~sNif~v~~g~l~T 193 (283)
T PRK07650 121 LPAEKEGVVL----KQRRNTPEGAFRLKSH-HYLNNILGKREIGNDPNKEGIFLTE--EGYVAEGIVSNLFWVKGDIVYT 193 (283)
T ss_pred hhhcCeEEEE----EEEecCCCCCcchhHH-hHHHHHHHHHHHHHcCCCeEEEECC--CCeEEEcCceEEEEEECCEEEc
Confidence 111122222 2456666678899996 9999999999999999999999998 9999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 157 P~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
||++.|+|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++|++||++|+++
T Consensus 194 P~l~~g~L~GitR~~li~~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i~~~ 254 (283)
T PRK07650 194 PSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRIEER 254 (283)
T ss_pred CCCcCCCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 18
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=5.3e-44 Score=298.17 Aligned_cols=204 Identities=25% Similarity=0.335 Sum_probs=167.5
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCccccc
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYFK 78 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~ 78 (220)
+||.+||+.|+|+.|+.+++.+.+.++++.+. ..++|+.++++.+.+|+.++ ..+.+++++.|++.++.
T Consensus 42 ~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~~~---------~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 112 (261)
T TIGR03461 42 ERLQDAAARLGIPLPDWDALREEMAQLAAGYS---------LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYS 112 (261)
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCC---------CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccCh
Confidence 59999999999999889999999999988652 34566656443333455432 35677788777653321
Q ss_pred CC-ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcC
Q 027646 79 EG-IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (220)
Q Consensus 79 ~g-~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP 157 (220)
.. ..++++.+++ .++..++.+.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||
T Consensus 113 ~~~~~g~~~~~~~-~~~~~~~~~~~~Kt~-~y~~~~~a~~~A~~~g~de~llln~--~g~v~E~s~sNif~~~~~~l~TP 188 (261)
T TIGR03461 113 AWQQQGIRLGVSP-VRLGRNPLLAGIKHL-NRLEQVLIKAELENSEADEALVLDT--DGNVVECTAANIFWRKGNQVFTP 188 (261)
T ss_pred hHhcCCEEEEEec-cccCCCCCCcCcccc-ccHHHHHHHHHhhhcCCCEEEEECC--CCCEEEeccEEEEEEECCEEECC
Confidence 11 1234455543 344444456899997 8999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 158 ~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+++.|+|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||++||++
T Consensus 189 ~~~~~~L~GItR~~il~~~~~~g~~v~E~~i~~~eL~~ade~f~~ns~~gi~pV~~id~~ 248 (261)
T TIGR03461 189 DLSYCGVAGVMRQHVLALLPALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAIGET 248 (261)
T ss_pred CccccCcccHHHHHHHHHHHHcCCeEEEEecCHHHHhhCCEEEEeCCccceEEEEEECCE
Confidence 999899999999999999999999999999999999999999999999999999999875
No 19
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=1.2e-43 Score=297.22 Aligned_cols=204 Identities=24% Similarity=0.328 Sum_probs=164.7
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCccccc
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYFK 78 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~ 78 (220)
+||++||+.|+|+.+..+++.+.+.+++... ...++|+.++++.+.+|+.++ ..|.+++++.|++.+..
T Consensus 44 ~RL~~Sa~~l~~~~~~~~~~~~~l~~~~~~~---------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 114 (268)
T PRK06092 44 QRLQDACERLAIPLDDWAQLEQEMKQLAAEL---------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYS 114 (268)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhhC---------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccCh
Confidence 5999999999999887777877777766321 234566556544334566543 35678888887653321
Q ss_pred C-CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcC
Q 027646 79 E-GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (220)
Q Consensus 79 ~-g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP 157 (220)
. ...++++.+++ .++..++.+.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||
T Consensus 115 ~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~~a~~~A~~~g~de~l~l~~--~g~v~E~s~sNif~v~~~~~~TP 190 (268)
T PRK06092 115 RWREQGITLALCP-TRLGRNPLLAGIKHL-NRLEQVLIRAELEQTEADEALVLDS--EGWVIECCAANLFWRKGGVVYTP 190 (268)
T ss_pred hHhhCCEEEEEec-cccCCCCCccCcchh-hhHHHHHHHHHHHhcCCCEEEEECC--CCCEEEccceEEEEEECCEEECC
Confidence 0 01234455543 344444456889996 8999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 158 ~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++||++
T Consensus 191 ~~~~~~L~GitR~~vl~~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~ 250 (268)
T PRK06092 191 DLDQCGVAGVMRQFILELLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGET 250 (268)
T ss_pred CccccCcccHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCE
Confidence 998899999999999999999999999999999999999999999999999999999865
No 20
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=2.3e-43 Score=295.68 Aligned_cols=200 Identities=33% Similarity=0.471 Sum_probs=167.1
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCcc--
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGN-- 75 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~-- 75 (220)
+||.+||+.|+|+.| +.+++++.+.++++.++. ..+.+|+++ ++|.+ .+|+.++ ..+.+++++.|++.
T Consensus 46 ~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~-----~~~~~~~~~-t~g~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 118 (270)
T cd01558 46 DRLYRSAKELRIDIPYTREELKELIRELVAKNEG-----GEGDVYIQV-TRGVG-PRGHDFPKCVKPTVVIITQPLPLPP 118 (270)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-----CCceEEEEE-EeCCC-ccCCCCCCCCCCEEEEEEEecCCCC
Confidence 599999999999876 789999999999998763 345677775 45544 3555442 35677777777652
Q ss_pred --cccCCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCE
Q 027646 76 --YFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV 153 (220)
Q Consensus 76 --~~~~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~ 153 (220)
++.+|+ ++.+.+ ..|. ..+++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||++++|+
T Consensus 119 ~~~~~~gv---~~~~~~-~~~~---~~~~~K~~-ny~~~~~a~~~a~~~g~de~l~ld~--~g~v~E~~~sNif~~~~~~ 188 (270)
T cd01558 119 AELLEKGV---RVITVP-DIRW---LRCDIKSL-NLLNNVLAKQEAKEAGADEAILLDA--DGLVTEGSSSNVFIVKNGV 188 (270)
T ss_pred hhhhhcCe---EEEEec-cccc---CCCCchhh-ccHHHHHHHHHHHHcCCCEEEEEcC--CCEEEEcCcEEEEEEECCE
Confidence 233443 444432 2332 34689997 8999999999999999999999998 9999999999999999999
Q ss_pred EEcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 154 ISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 154 l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
|+||+++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++|+++
T Consensus 189 l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~gv~PV~~i~~~ 252 (270)
T cd01558 189 LVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEIDGR 252 (270)
T ss_pred EECCCCcCCCCCChHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEecCcccEEEEEEECCe
Confidence 9999999999999999999999999999999999999999999999999999999999999865
No 21
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=2.4e-43 Score=298.37 Aligned_cols=200 Identities=21% Similarity=0.291 Sum_probs=162.3
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCcc--
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGN-- 75 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~-- 75 (220)
+||.+||+.|+|+.| +.+++.+.+.+++++++. ....+||+.+.++++.+++.++ ..|+++++..+.+.
T Consensus 55 ~RL~~Sa~~L~i~~p~~~~~l~~~l~~~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (290)
T PRK12400 55 TRLYRSMEEIELTLPFSKAELITLLYKLIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPA 128 (290)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCch
Confidence 599999999999987 788999999999998862 1234566666544334555433 35667766654321
Q ss_pred -cccCCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEE
Q 027646 76 -YFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVI 154 (220)
Q Consensus 76 -~~~~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l 154 (220)
++.+|+ ++...+ ..++.++++||+ ||+.+++++++|+++|+||+||+| +|+|+||+++||||++||+|
T Consensus 129 ~~~~~g~---~~~~~~----~~~~~~~~~Kt~-nyl~~vla~~ea~~~g~deaL~l~---~g~v~E~t~sNif~v~~~~l 197 (290)
T PRK12400 129 LWIEYGV---RAISEP----DTRWLRCDIKSL-NLLPNILAATKAERKGCKEALFVR---NGTVTEGSHSNFFLIKNGTL 197 (290)
T ss_pred hHHhcCc---EEEECC----CCCccCCCCccc-ccHHHHHHHHHHHHcCCCEEEEEc---CCEEEEcCceEEEEEECCEE
Confidence 123343 332221 223345789996 899999999999999999999995 79999999999999999999
Q ss_pred EcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 155 STPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 155 ~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+|||++.|+|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++||++
T Consensus 198 ~TPpl~~g~L~GItR~~llela~~~gi~v~E~~i~~~eL~~Adevfltns~~gv~PV~~i~~~ 260 (290)
T PRK12400 198 YTHPANHLILNGIIRQYVLSLAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMTHLDGT 260 (290)
T ss_pred EeCCCCCCcCcCHHHHHHHHHHHHcCCcEEEEeCCHHHHHhCCeeeEccCcceEEEEEEECCE
Confidence 999999999999999999999999999999999999999999999999999999999999865
No 22
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=8.6e-43 Score=295.03 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=165.2
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCccc----
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNY---- 76 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~---- 76 (220)
+||.+||+.|+|+.|+.+++.+++.++++++.. .....+||+++..+.+.. ..|++++++.|++..
T Consensus 60 ~RL~~Sa~~l~i~~~~~~~l~~~i~~~v~~~~~-----~~~~~~iRl~v~~g~~~~-----~~~~~~i~~~p~~~~~~~~ 129 (292)
T PRK07849 60 ERLARSAALLDLPEPDLDRWRRAVELAIEEWRA-----PEDEAALRLVYSRGRESG-----GAPTAWVTVSPVPERVARA 129 (292)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcC-----CCCCeEEEEEEeCCCCCC-----CCCeEEEEEeecCccchhh
Confidence 599999999999998888999999999988731 013567887665432222 246677888876532
Q ss_pred ccCCccceEEEeecc-----eeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEEC
Q 027646 77 FKEGIAPINLVVEHE-----LHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKG 151 (220)
Q Consensus 77 ~~~g~~~~~l~~~~~-----~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~ 151 (220)
+.+| +++.+.+. ..+..|..++++||+ ||+.++++.++|+++|+||+||+|+ +|+|+||+++||||++|
T Consensus 130 ~~~g---v~l~~~~~~~~~~~~~~~p~~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~--~G~v~E~s~~Nif~~~~ 203 (292)
T PRK07849 130 RREG---VSVITLDRGYPSDAAERAPWLLAGAKTL-SYAVNMAALRYAARRGADDVIFTST--DGYVLEGPTSTVVIATD 203 (292)
T ss_pred ccCC---eEEEEEeccccCcccccCcccccccchh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEEC
Confidence 2234 34444321 112234456889996 8999999999999999999999998 89999999999999999
Q ss_pred CEEEcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 152 NVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 152 ~~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
|+|+||+++.|+|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||++||++
T Consensus 204 g~l~TP~~~~giL~GItR~~vie~~~~~g~~v~er~i~~~eL~~Adevfltns~~gi~pV~~id~~ 269 (292)
T PRK07849 204 DRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTLDGR 269 (292)
T ss_pred CEEECCCCcCCCCccHHHHHHHHHHHHcCCceEEEECCHHHHhhCCEEEEecCcceEEEEEEECCE
Confidence 999999999999999999999999999999999999999999999999999999999999999865
No 23
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=1.8e-42 Score=297.87 Aligned_cols=203 Identities=23% Similarity=0.282 Sum_probs=165.3
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCcccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (220)
+||++||+.|+|+.| +.+++.+.+.+++++++. ...++|++++++.+.+++.+. ..|++++++.|.+...
T Consensus 89 ~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~ 161 (336)
T PLN02845 89 DRFLRSAAKAKIPLPFDRATLRRILLQTVAASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQ 161 (336)
T ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEccccccc
Confidence 599999999999887 889999999999998863 345677666544334555432 4677777776643211
Q ss_pred cCCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEE-CCEEEc
Q 027646 78 KEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK-GNVIST 156 (220)
Q Consensus 78 ~~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~-~~~l~T 156 (220)
. ...++++.+. ++++. ++.++++||+ ||+.+++++++|+++|+||+||+|+ +|+|+||+++||||++ ||+|+|
T Consensus 162 ~-~~~gv~l~~~-~~~~~-~~~~~~~Kt~-nyl~~vla~~eA~~~G~deaLlln~--~G~V~Egt~sNiF~v~~~~~l~T 235 (336)
T PLN02845 162 D-RPEGVKVVTS-SVPIK-PPQFATVKSV-NYLPNALSQMEAEERGAFAGIWLDE--EGFVAEGPNMNVAFLTNDGELVL 235 (336)
T ss_pred c-ccCCeEEEEe-eeeec-CCccccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCcceEEEEEECCEEEe
Confidence 1 0123444444 33443 3346799996 8999999999999999999999998 8999999999999885 999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhC---C--CeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 157 PAIKGTILPGITRKSIIDVAQSQ---G--FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 157 P~l~~~~L~GitR~~ll~~a~~~---g--~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
||++ ++|+||||+.|+++|+++ | ++|+|+.++++||.+|||+|+|||++||+||++||++
T Consensus 236 P~l~-~iL~GItR~~vlela~~~~~~G~~i~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~id~~ 300 (336)
T PLN02845 236 PPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQ 300 (336)
T ss_pred CCCC-CcCccHHHHHHHHHHHhhhccCCceEEEEEecCHHHHhcCCEEEEecCcccEEEEEEECCE
Confidence 9997 599999999999999986 8 8999999999999999999999999999999999975
No 24
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2e-42 Score=291.84 Aligned_cols=208 Identities=41% Similarity=0.629 Sum_probs=178.1
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccC
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (220)
+||++||+.|+|+.| +.+++......+++.++. ...+|+|+++++.++.+|+.+...+.+.+++.|+++++..
T Consensus 50 ~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 123 (284)
T COG0115 50 ARLKRSAKRLGLPRPESEEEIELLIQLLLAKNNL------VPGLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKG 123 (284)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhCC------CCceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCc
Confidence 599999999999998 788888888888877764 1238999999988777777775578899999999887654
Q ss_pred Cc--cceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEE-CCEEEc
Q 027646 80 GI--APINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK-GNVIST 156 (220)
Q Consensus 80 g~--~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~-~~~l~T 156 (220)
+. .++.+.+.+.+++..+++...+|++ ||+.+++++++|+++|+||+|++|. +|+|+|++++|+|+++ ||+|+|
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~k~~-~y~~~~~a~~~A~~~G~~eal~~~~--~G~V~Eg~~sNvf~v~~dg~~~T 200 (284)
T COG0115 124 GRLEKGVVLVISSPVRRAPPGPGAAKKTG-NYLSSVLAKREAKAAGADEALLLDE--DGYVTEGAGSNVFFVKGDGVLVT 200 (284)
T ss_pred ccccCCeEEEEeehhhccCCCcchhhhhc-ccHHHHHHHHHHHHCCCCEEEEecC--CCeEEEcCcceEEEEEECCEEEC
Confidence 42 3433334334555544445678885 9999999999999999999999998 8999999999999999 889999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 157 P~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
|+++.++|+||||+.+|++|+++|++++|++++.+||.+|||+|+|||+.||+||.+|+++
T Consensus 201 P~~~~~iL~GitR~~li~la~~~G~~v~E~~i~~~~l~~adevf~t~t~~~v~PV~~i~~~ 261 (284)
T COG0115 201 PPLSGGILPGITRDSLLELAKELGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLIDGR 261 (284)
T ss_pred CCCCCCccccHHHHHHHHHHHHcCceEEEeecCHHHHhhCCEEEEEccceEEEEEEEECCc
Confidence 9999999999999999999999999999999999999999999999999999999999765
No 25
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=4.1e-42 Score=290.30 Aligned_cols=199 Identities=25% Similarity=0.360 Sum_probs=163.9
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCC-C--CCCeeEEEEEecCccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLA-P--APEYTFLIYVSPVGNY 76 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~-~--~~~~~~~i~~~p~~~~ 76 (220)
+||.+||+.|+|+.| +.+++.+.+.+++++|+. .++ ++|++++++.+.+++. + ...|++++++.|++.+
T Consensus 51 ~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~~~~~~-----~~~--~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~ 123 (286)
T PRK06680 51 ARLFRSLGEIRIAPPMTRAELVEVLRELIRRNRV-----REG--LVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFA 123 (286)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC-----Cce--EEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEecccc
Confidence 599999999999977 889999999999998864 234 4554454333334544 3 2467888888876531
Q ss_pred -----ccCCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEE-E
Q 027646 77 -----FKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVV-K 150 (220)
Q Consensus 77 -----~~~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~-~ 150 (220)
+.+|+ ++.+.+. . ++..+++||+ ||+.+++++++|+++|+||+||+| +|+|+|++++|+|++ +
T Consensus 124 ~~~~~~~~gv---~~~~~~~-~---~~~~~~~Ks~-nyl~~vla~~eA~~~g~dd~l~ld---~g~v~E~~~sN~f~~~~ 192 (286)
T PRK06680 124 RPAAAAETGI---KVITVPD-N---RWKRCDIKSV-GLLPNVLAKQAAKEAGAQEAWMVD---DGFVTEGASSNAWIVTK 192 (286)
T ss_pred CChhHHhCCe---EEEEecC-C---CCCCCCcchh-ccHHHHHHHHHHHHCCCCEEEEec---CCEEEEcCcEEEEEEEE
Confidence 23343 3333321 1 2345689997 899999999999999999999998 589999999999999 9
Q ss_pred CCEEEcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 151 GNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 151 ~~~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+|+|+|||++.++|+||||+.++++|++.|++|+|+.++++||.+|||+|+|||++||+||++|+++
T Consensus 193 ~~~l~TP~~~~~iL~Gitr~~il~~a~~~g~~v~e~~i~~~el~~ade~f~~ns~~gi~pV~~id~~ 259 (286)
T PRK06680 193 DGKLVTRPADNFILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQIDGK 259 (286)
T ss_pred CCEEEeCCCCCCCCcCHHHHHHHHHHHHcCCeEEEEcCCHHHHhcCcEEEEecCcccEEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
No 26
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=4.3e-42 Score=288.82 Aligned_cols=199 Identities=26% Similarity=0.306 Sum_probs=160.6
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCC-C--CCeeEEEEEecCcc-
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP-A--PEYTFLIYVSPVGN- 75 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~-~--~~~~~~i~~~p~~~- 75 (220)
+||++||+.|+|+.| +.+++.+.+.+++++++. .++ ++|+.+.++.+.+++.. . ..+.++++..|++.
T Consensus 48 ~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~~~~~~-----~~~--~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (276)
T TIGR01121 48 DRLYASAAKIRIDIPYTKEELHQLLHELVEKNNL-----NTG--HVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRP 120 (276)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-----Cce--EEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCC
Confidence 599999999999976 799999999999998864 234 45544433322344432 2 24566677666542
Q ss_pred --cccCCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCE
Q 027646 76 --YFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV 153 (220)
Q Consensus 76 --~~~~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~ 153 (220)
.+.+|++ +..... .| +..+++|++ ||+.+++++++|+++|+||+||++ +|+|+||+++|||++++|+
T Consensus 121 ~~~~~~gv~---~~~~~~-~~---~~~~~~K~~-nyl~~vla~~eA~~~g~de~l~~~---~g~v~E~~~sNif~v~~~~ 189 (276)
T TIGR01121 121 EENLEKGVK---AITVED-IR---WLRCDIKSL-NLLGNVLAKQEAHEKGAYEAILHR---GGTVTEGSSSNVYGIKDGV 189 (276)
T ss_pred hhHHhcCeE---EEEecC-CC---ccCCCcchh-hhHHHHHHHHHHHHcCCCEEEEec---CCeEEecCceeEEEEECCE
Confidence 1234443 322221 22 234689996 899999999999999999999995 6899999999999999999
Q ss_pred EEcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 154 ISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 154 l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
|+|||++.|+|+||||+.++++|+++|++++|+.++++||.+|||+|+|||++||+||++||++
T Consensus 190 ~~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~~id~~ 253 (276)
T TIGR01121 190 LYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEIDGQ 253 (276)
T ss_pred EEeCCCcCCCCcCHHHHHHHHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999999999865
No 27
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=281.92 Aligned_cols=196 Identities=17% Similarity=0.184 Sum_probs=160.3
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC-CCeeEEEEEecCcccccC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA-PEYTFLIYVSPVGNYFKE 79 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~-~~~~~~i~~~p~~~~~~~ 79 (220)
+||.+||+.|++..++.+++.+.+.++++. + ....+||++++++++.+|+.+. ..+++++++.|++....+
T Consensus 46 ~RL~~sa~~l~~~~~~~~~l~~~l~~~~~~-~-------~~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 117 (266)
T PRK09266 46 QRLRRASRELFGAALDDDRVRAQLRAALAA-G-------PADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGPAG 117 (266)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-C-------CCcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCCCC
Confidence 599999999865434789999999998843 3 1457888877654445565332 367777777776543334
Q ss_pred CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcCCC
Q 027646 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAI 159 (220)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP~l 159 (220)
|+ ++.+. ++.|. ++++||. +|+.+++++++|+++|+||+||+|+ +|+|+||+++|||++++|+|+||+.
T Consensus 118 ~v---~l~~~-~~~r~----~~~~K~~-~~l~~vla~~~a~~~g~de~l~ln~--~g~v~E~~~sNlf~v~~~~l~TP~~ 186 (266)
T PRK09266 118 PL---RLQSV-PYERE----LPHIKHV-GTFGQLHLRRLAQRAGFDDALFVDP--DGRVSEGATWNLGFWDGGAVVWPQA 186 (266)
T ss_pred Ce---EEEEE-Eeccc----CCCCCCC-CcHHHHHHHHHHHHcCCCeEEEEcC--CCcEEEcCceEEEEEECCEEECCCC
Confidence 43 34443 23443 4579997 7788899999999999999999998 8999999999999999999999994
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
++|+||||+.++++++++|++++|+.++++||.+|||+|+|||++||+||.+||++
T Consensus 187 --~~L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~ 242 (266)
T PRK09266 187 --PALPGVTMALLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDV 242 (266)
T ss_pred --CccchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999999999864
No 28
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=100.00 E-value=2.3e-41 Score=277.04 Aligned_cols=205 Identities=31% Similarity=0.392 Sum_probs=151.7
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCccccc-
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFK- 78 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~- 78 (220)
+||.+||+.+ +..+ +.+++.+.+.++++.++. .+..|+|++++++++..+..++..+..............
T Consensus 8 ~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (231)
T PF01063_consen 8 ERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPENSAPPPFSIAPPRRPPP 80 (231)
T ss_dssp HHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECSEEEEEEEEEETCHHHHE
T ss_pred HHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCccccccccccccccccCCc
Confidence 5999999999 5443 789999999999998861 245589988877655555544332211111111111100
Q ss_pred --CCccceEEEeecceeecCCCCCCCcccccchHHHHH-HHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEE
Q 027646 79 --EGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLK-AQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS 155 (220)
Q Consensus 79 --~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~-a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~ 155 (220)
.....+. +... ....+++++++||+ +|+.+.+ +.++|+++|+||+||+|+ +|+|+|++++|||+++||+|+
T Consensus 81 ~~~~~~~~~--~~~~-~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~--~G~v~E~~~sNif~~~~~~~~ 154 (231)
T PF01063_consen 81 PLVGSVGVR--RASP-PLPRPNPLPRHKTT-NRLANVLAALRAAREKGADEALLLDE--DGNVTEGSTSNIFFVKDGTLY 154 (231)
T ss_dssp EEEEECSEE--CETT-TSE-TTTSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEET--TSBEEEESSSEEEEEETTEEE
T ss_pred ceeeeeeEE--eccc-cccccCCCCCeeEC-CcchhhHHHHHHHHhcCcchhheecC--CCCcCCCCCcccccccCCEEE
Confidence 0011111 1111 11112247899997 6666666 777788999999999998 999999999999999999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeCC
Q 027646 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 156 TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~~ 218 (220)
||+++.|+|+||||+.++++++++|++++|+.++++||.+|||+|+|||++||+||++|+++.
T Consensus 155 TP~~~~giL~Gitr~~ll~~~~~~g~~v~e~~i~~~~L~~ade~fl~ns~~gi~pV~~i~~~~ 217 (231)
T PF01063_consen 155 TPPLDSGILPGITRQLLLELAKELGIPVEERPITLDDLQQADEVFLTNSLRGIRPVKSIDGRS 217 (231)
T ss_dssp EESGSSSSB--HHHHHHHHHHHHTTSEEEEE-BBHHHHHTHSEEEEEETTTEEEEEEEETTEE
T ss_pred cCChhhhhccHHHHHHHHHHHHhCCCCcEEEEeCHHHhhhhhheEEecchhhEEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999999999999999999863
No 29
>PRK07546 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=260.11 Aligned_cols=183 Identities=19% Similarity=0.262 Sum_probs=149.3
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccCC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (220)
+||++||+.|+++.+ .+++.+.+.++++++. +.+++|+++.+++ .+++...|+++....
T Consensus 26 ~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g-----------~~~i~~~p~~~~~~~- 84 (209)
T PRK07546 26 ARLERSARALGFPCD-PAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG-----------RLTVETAPLPPLPPD- 84 (209)
T ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHhhccC--------CCeEEEEEEcCCC-----------CEEEEEecCCCCCCC-
Confidence 599999999999985 6788888988887532 4578887654322 245666666432211
Q ss_pred ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEE-cCCC
Q 027646 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS-TPAI 159 (220)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~-TP~l 159 (220)
.+.++.+.. ..+..++++.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+||+++||||+++|+|+ |||+
T Consensus 85 -~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~--~G~v~E~s~~Ni~~~~~~~~~~TP~~ 159 (209)
T PRK07546 85 -TVWRVAIAR-TRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNE--RGEVCEGTITNVFLDRGGGMLTTPPL 159 (209)
T ss_pred -CcEEEEEcC-cccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECC--CCcEEEcCceeEEEEECCEEEECCCC
Confidence 122333332 344555567899996 8999999999999999999999998 999999999999999999999 9999
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEE
Q 027646 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i 214 (220)
+.|+|+||||+.+++. .+++|+.++++||.+|||+|+|||++||+||..|
T Consensus 160 ~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~~L~~adevfl~NSl~gv~pV~~~ 209 (209)
T PRK07546 160 SCGLLPGVLRAELLDA-----GRAREAVLTVDDLKSARAIWVGNSLRGLIRAELI 209 (209)
T ss_pred cCCCCccHHHHHHHhh-----CCeEEEEcCHHHHhhCCEEEEEccceeEEEEEEC
Confidence 9999999999999985 5899999999999999999999999999999875
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.96 E-value=6.7e-29 Score=197.25 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=117.9
Q ss_pred ChHHhHHhhcCCCC-C-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCccccc
Q 027646 1 MRMQVGAERMCMPS-P-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFK 78 (220)
Q Consensus 1 ~RL~~sa~~l~i~~-~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~ 78 (220)
+||.+||+.|++.. | +.+++.+.+.++. ++.+|+|++. +.+ .+ -+...|+++...
T Consensus 24 ~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~r~rl~~-~~g-~~----------~~~~~~~~~~~~ 80 (187)
T PRK07101 24 QRYERTLAEFYGKEAPFDLAEIIQPPTELQ-----------EGLVRCRIDY-NAE-IY----------QVQYFPYQRRPI 80 (187)
T ss_pred HHHHHHHHHHcccCCcccHHHHhhchhhhc-----------CCCEEEEEEe-cCC-cE----------EEEEEcCCCCCc
Confidence 59999999999854 4 6777777775441 2467888644 443 11 122333332111
Q ss_pred CCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcCC
Q 027646 79 EGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPA 158 (220)
Q Consensus 79 ~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP~ 158 (220)
.+ +++... ++...++||++ +. .+....|++.|+||+||+| +|+|+||+++|||+++||+|+|||
T Consensus 81 ~~---~~~~~~-------~~~~~~~Kt~~-r~--~~~~~~a~~~g~de~l~~~---~G~v~E~~~sNi~~~~~~~~~TP~ 144 (187)
T PRK07101 81 RS---FQPVYC-------DDIDYSLKYTD-RS--ALNELFAQKGECDEIIIIK---NGLVTDTSIGNLAFFDGKQWFTPK 144 (187)
T ss_pred Cc---eEEEec-------CCcccccccCC-HH--HHHHHHHHhCCCCEEEEEc---CCEEEEccceEEEEEECCEEEcCC
Confidence 22 333222 22344899974 31 2333445678999999997 799999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCccee
Q 027646 159 IKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVV 208 (220)
Q Consensus 159 l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi 208 (220)
.|+|+||||+.+++. | +++|+.++++||.+|||+|+|||++|+
T Consensus 145 --~~~L~Gi~R~~ll~~----~-~v~e~~i~~~~L~~ad~~~~~nsl~G~ 187 (187)
T PRK07101 145 --KPLLKGTQRARLLDE----G-KIKEKDITVEDLLQYEEIRLINAMNGF 187 (187)
T ss_pred --CCCccHHHHHHHHcc----C-CEEEEecCHHHHhcCCEEEEEecccCC
Confidence 489999999999974 5 899999999999999999999999984
No 31
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=67.49 E-value=12 Score=25.65 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=26.5
Q ss_pred HHHHhCCCeEE---------EEecCHHHHhccceeeeecCc
Q 027646 174 DVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 205 (220)
Q Consensus 174 ~~a~~~g~~v~---------e~~i~~~eL~~ade~f~tns~ 205 (220)
+.|++.|+.+. +..++.+++..||-+++.+..
T Consensus 22 ~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 22 KAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 46777898777 567888999999999998775
No 32
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=65.96 E-value=13 Score=25.95 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCeEE---------EEecCHHHHhccceeeeecCc
Q 027646 171 SIIDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 205 (220)
Q Consensus 171 ~ll~~a~~~g~~v~---------e~~i~~~eL~~ade~f~tns~ 205 (220)
.+-+.|+++|+.+. +..++.+++..||-+++++..
T Consensus 20 ~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 20 ALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADV 63 (96)
T ss_pred HHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCC
Confidence 34467888998777 556778999999999998875
No 33
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=63.92 E-value=14 Score=25.32 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCeEE---------EEecCHHHHhccceeeeecCc
Q 027646 170 KSIIDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 205 (220)
Q Consensus 170 ~~ll~~a~~~g~~v~---------e~~i~~~eL~~ade~f~tns~ 205 (220)
+.+-+.|++.|+.+. +..++.+++..||-+++.+..
T Consensus 4 eaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 4 EALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 445567888998776 456888999999999998875
No 34
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=53.37 E-value=27 Score=25.69 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCeEE---------EEecCHHHHhccceeeeecC
Q 027646 170 KSIIDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGT 204 (220)
Q Consensus 170 ~~ll~~a~~~g~~v~---------e~~i~~~eL~~ade~f~tns 204 (220)
+.|-..|+++|+.|. +-.++.+|+..||-+++..-
T Consensus 22 eaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~AaD 65 (122)
T COG1445 22 EALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAAD 65 (122)
T ss_pred HHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEec
Confidence 344557888887654 45799999999999998754
No 35
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=51.60 E-value=13 Score=23.37 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=27.0
Q ss_pred ceEEEEEECCEEEcCCCCCCCCCchHHHHHHHHHHhCC
Q 027646 143 SCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180 (220)
Q Consensus 143 ~sNif~~~~~~l~TP~l~~~~L~GitR~~ll~~a~~~g 180 (220)
-++++++.|++.+--.+..=+|-|+--...-++|.++|
T Consensus 31 ~~~f~ivi~~q~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 31 ESHFAIVIGEQSIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred CCcEEEEECCeEEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 35667777777766666667778888777777877654
No 36
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=49.17 E-value=33 Score=24.83 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.4
Q ss_pred HHHHHhCCCeEE---------EEecCHHHHhccceeeeecCc
Q 027646 173 IDVAQSQGFQVE---------ERLVTVEELLDADEVFCTGTA 205 (220)
Q Consensus 173 l~~a~~~g~~v~---------e~~i~~~eL~~ade~f~tns~ 205 (220)
-+.|++.|+.+. +..++.+++..||-+++.+..
T Consensus 26 ~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~ 67 (114)
T PRK10427 26 EKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDI 67 (114)
T ss_pred HHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecC
Confidence 346777898776 456888999999999998765
No 37
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.15 E-value=45 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=32.1
Q ss_pred HHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEE
Q 027646 3 MQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIR 46 (220)
Q Consensus 3 L~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir 46 (220)
|+.+.+.|++..| +++++.+--+.+.+-|... ..|.+||+
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdks----kGGSFYLQ 98 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDKS----KGGSFYLQ 98 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcc----cCcceeeh
Confidence 6788999999877 8999999999999888642 24677775
No 38
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=43.04 E-value=18 Score=25.07 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=26.7
Q ss_pred CchHHHHHHHHHHhCCCeEEEEecCHHHHhcc
Q 027646 165 PGITRKSIIDVAQSQGFQVEERLVTVEELLDA 196 (220)
Q Consensus 165 ~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~a 196 (220)
.|=.-+.+++.|+++|++++|.+.-.+.|.+-
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~l 61 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPLLVELLLKL 61 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHHHHHHHHhc
Confidence 56677899999999999999998877777554
No 39
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=37.87 E-value=43 Score=27.16 Aligned_cols=26 Identities=27% Similarity=0.630 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCeEEEEecCHHHHhc
Q 027646 170 KSIIDVAQSQGFQVEERLVTVEELLD 195 (220)
Q Consensus 170 ~~ll~~a~~~g~~v~e~~i~~~eL~~ 195 (220)
+.+++.|++.|+.|+++.++.+||..
T Consensus 93 ~~lF~~A~~~gi~V~~rsvs~~ei~~ 118 (212)
T PF09778_consen 93 NRLFQKAKAAGINVEKRSVSIQEIIE 118 (212)
T ss_pred HHHHHHHHHcCCceEEeeccHHHHHH
Confidence 46778899999999999999999854
No 40
>PRK06683 hypothetical protein; Provisional
Probab=37.76 E-value=51 Score=22.30 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhCCCeEEEEecCHHHHhccceee
Q 027646 167 ITRKSIIDVAQSQGFQVEERLVTVEELLDADEVF 200 (220)
Q Consensus 167 itR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f 200 (220)
-+++.+.+.|++.++++..-. +..||..|=..=
T Consensus 40 ~~~~~i~~~~~~~~Vpv~~~~-t~~eLG~A~G~~ 72 (82)
T PRK06683 40 RLTHVIIRTALQHNIPITKVE-SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHHHHHHHhcCCCEEEEC-CHHHHHHHhCCc
Confidence 388899999999999998877 999998875443
No 41
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=37.18 E-value=56 Score=22.04 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhCCCeEEEEecCHHHHhccc
Q 027646 167 ITRKSIIDVAQSQGFQVEERLVTVEELLDAD 197 (220)
Q Consensus 167 itR~~ll~~a~~~g~~v~e~~i~~~eL~~ad 197 (220)
-+++.+.++|++.++++.+-. +..||..|-
T Consensus 40 ~~~~~i~~~c~~~~Vp~~~~~-s~~eLG~a~ 69 (82)
T PRK13602 40 RLTEKVEALANEKGVPVSKVD-SMKKLGKAC 69 (82)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CHHHHHHHH
Confidence 489999999999999998777 889998764
No 42
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=36.55 E-value=38 Score=24.62 Aligned_cols=43 Identities=35% Similarity=0.482 Sum_probs=28.5
Q ss_pred CCCchHHHHHHHHHHhCCC-eEEEEe----cCHHHHhccceeeeecCcc
Q 027646 163 ILPGITRKSIIDVAQSQGF-QVEERL----VTVEELLDADEVFCTGTAV 206 (220)
Q Consensus 163 ~L~GitR~~ll~~a~~~g~-~v~e~~----i~~~eL~~ade~f~tns~~ 206 (220)
.|-||+|..+-++.+ +++ .++.|. .+..-|..-|-+|+|++..
T Consensus 5 ~LtGIs~~vie~l~~-~~~rTieiRsa~N~~tv~rl~~GDlVFlT~~~~ 52 (122)
T COG1935 5 ALTGISRRVIESLLR-NPIRTIEIRSARNLLTVLRLHEGDLVFLTSTSL 52 (122)
T ss_pred EEechhHHHHHHHHh-CCceEEEEEcccchHHhhcCCCCCEEEEehhHh
Confidence 578999998776654 455 333333 3444556679999998754
No 43
>PRK03972 ribosomal biogenesis protein; Validated
Probab=35.21 E-value=2.4e+02 Score=22.79 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=49.2
Q ss_pred HHHHHCCCCeEEEeecCCCceEEEcC-----------c-----eEEEEEECC-------------EEEcCCCCCCCCCch
Q 027646 117 SAAKAKGYSDVLYLDCVHKRYLEEVS-----------S-----CNIFVVKGN-------------VISTPAIKGTILPGI 167 (220)
Q Consensus 117 ~~a~~~g~de~l~ld~~~~g~v~E~~-----------~-----sNif~~~~~-------------~l~TP~l~~~~L~Gi 167 (220)
..|.+.|+.+.|++++. +|+...-. + +|+...++= .++|-..... +|
T Consensus 43 ~~A~~~g~TdLIVV~E~-rg~P~~L~i~hLP~gP~GPTa~FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~kt~--~g- 118 (208)
T PRK03972 43 MEAYDRGYERLLIINVW-KGNPLKMTFIKVGPEDWGYLGYLYLHGIKLQREMGFRNLRPIREDMPLVITTAKRVG--LD- 118 (208)
T ss_pred HHHHHCCCCeEEEEecC-CCcCCeEEEEcCCCCCCCceEEEEEccEEEHHHcccCCCCCccccccEEEEcCCCCC--HH-
Confidence 46788999999999983 45332221 2 232222221 2333222211 22
Q ss_pred HHHHHHHHHHhCCCeEEEE-ecCHHHH---hccceee-eecCccee
Q 027646 168 TRKSIIDVAQSQGFQVEER-LVTVEEL---LDADEVF-CTGTAVVV 208 (220)
Q Consensus 168 tR~~ll~~a~~~g~~v~e~-~i~~~eL---~~ade~f-~tns~~gi 208 (220)
.++..-++|.++|++..+| ..++++| ..+|.++ +..--+|+
T Consensus 119 ~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLVV~~~~~~~ 164 (208)
T PRK03972 119 HMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGVIERHPRGM 164 (208)
T ss_pred HHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEEEecCCCce
Confidence 2445566788899987765 5788998 3346666 44445554
No 44
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=31.85 E-value=73 Score=24.42 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=42.2
Q ss_pred HHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEE---EECCEEEcCCCCCCCCCchHHHHHHHHHHhCCCeEEEE
Q 027646 114 KAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFV---VKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEER 186 (220)
Q Consensus 114 ~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~---~~~~~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~ 186 (220)
.+...|++.|++-++.=.. .+-..+....|+.- ..+-.+++|-+ +++++-+.++++++|++.--+
T Consensus 94 ~~~~~A~~~g~~~I~~G~~--~~D~~~~~~~~l~~~~~~~~~~i~rPl~------~~~K~eI~~~a~~~gl~~~~~ 161 (177)
T cd01712 94 IAEKLAEELGADAIVTGES--LGQVASQTLENLLVISSGTDLPILRPLI------GFDKEEIIGIARRIGTYDISI 161 (177)
T ss_pred HHHHHHHHcCCCEEEEccC--cccchHHHHHhhhhcccCCCCeEECCCC------CCCHHHHHHHHHHcCCcceec
Confidence 3556778889875443221 23345555556543 24567888853 889999999999999765433
No 45
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=31.21 E-value=82 Score=21.36 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHhCCCeEEEEecCHHHHhccc
Q 027646 166 GITRKSIIDVAQSQGFQVEERLVTVEELLDAD 197 (220)
Q Consensus 166 GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ad 197 (220)
-=|++.+.+.|+..++++ ....+..||-.|=
T Consensus 36 ~~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~ 66 (82)
T PRK13601 36 EHVTKKIKELCEEKSIKI-VYIDTMKELGVMC 66 (82)
T ss_pred HHHHHHHHHHHHhCCCCE-EEeCCHHHHHHHH
Confidence 367889999999999999 5777999998774
No 46
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=30.90 E-value=39 Score=22.41 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCCchHHHHHHHHHHhCCCeEEEEecCHHHHh
Q 027646 163 ILPGITRKSIIDVAQSQGFQVEERLVTVEELL 194 (220)
Q Consensus 163 ~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~ 194 (220)
-+.|++|...++.+.+.|++ ..++.+||.
T Consensus 42 elag~s~~eF~~~L~~~gI~---~~~~~eel~ 70 (76)
T PF03683_consen 42 ELAGMSRWEFLELLKERGIP---INYDEEELE 70 (76)
T ss_pred HHhCCCHHHHHHHHHHCCCC---CCCCHHHHH
Confidence 36899999999999999987 347888875
No 47
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=28.03 E-value=86 Score=20.79 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=23.5
Q ss_pred EEEcCCCCCCCCCchHHHHHHHHHHhCCCeEE
Q 027646 153 VISTPAIKGTILPGITRKSIIDVAQSQGFQVE 184 (220)
Q Consensus 153 ~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~ 184 (220)
+.+-|.+..-++.+..-+.+++.|++.|++|.
T Consensus 28 T~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 28 TEVPPELRGQGIAKKLVEAALDYARENGLKVV 59 (78)
T ss_dssp EEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEECccccCCcHHHHHHHHHHHHHHHCCCEEE
Confidence 45556666667888888888999999998875
No 48
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=27.56 E-value=45 Score=19.90 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=15.9
Q ss_pred CCCCchHHHHHHHHHHhCCC
Q 027646 162 TILPGITRKSIIDVAQSQGF 181 (220)
Q Consensus 162 ~~L~GitR~~ll~~a~~~g~ 181 (220)
+.+.-=||+.|++.++++|+
T Consensus 24 ~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 24 PRVSEETRERILEAAEELGY 43 (46)
T ss_dssp SSSTHHHHHHHHHHHHHHTB
T ss_pred CCCCHHHHHHHHHHHHHHCC
Confidence 34566789999999999886
No 49
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=27.38 E-value=94 Score=28.51 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=25.3
Q ss_pred HHHHhCCCeEE---------EEecCHHHHhccceeeeecC
Q 027646 174 DVAQSQGFQVE---------ERLVTVEELLDADEVFCTGT 204 (220)
Q Consensus 174 ~~a~~~g~~v~---------e~~i~~~eL~~ade~f~tns 204 (220)
+.|++.|+++. +..++.+|+.+||-+++...
T Consensus 28 ~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d 67 (482)
T PRK11404 28 QKARSLGHTIKVETQGSSGVENRLSSEEIAAADYVILATG 67 (482)
T ss_pred HHHHHCCCeEEEEecCCccCCCCCCHHHHHhCCEEEEeec
Confidence 46777898777 56788899999999999854
No 50
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=27.35 E-value=1e+02 Score=21.59 Aligned_cols=34 Identities=24% Similarity=0.064 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHHhCCCeEEEEecCHHHHhccce
Q 027646 165 PGITRKSIIDVAQSQGFQVEERLVTVEELLDADE 198 (220)
Q Consensus 165 ~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade 198 (220)
+--+++.+.++|++.++++..-..+-+||..|=.
T Consensus 43 ~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~G 76 (99)
T PRK01018 43 PKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCG 76 (99)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhC
Confidence 4468899999999999998776679999988743
No 51
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=26.38 E-value=1e+02 Score=22.04 Aligned_cols=35 Identities=23% Similarity=0.038 Sum_probs=29.6
Q ss_pred CCchHHHHHHHHHHhCCCeEEEEecCHHHHhccce
Q 027646 164 LPGITRKSIIDVAQSQGFQVEERLVTVEELLDADE 198 (220)
Q Consensus 164 L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade 198 (220)
.+.-|++.+.+.|+..++|+..-..+-+||..|=.
T Consensus 51 ~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~G 85 (108)
T PTZ00106 51 CPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACG 85 (108)
T ss_pred CCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhC
Confidence 36778999999999999999877789999988743
No 52
>PF04322 DUF473: Protein of unknown function (DUF473); InterPro: IPR007417 This is a family of uncharacterised archaeal proteins.
Probab=26.35 E-value=65 Score=23.62 Aligned_cols=43 Identities=30% Similarity=0.494 Sum_probs=29.4
Q ss_pred CCCchHHHHHHHHHHhCCC-eEEEEe----cCHHHHhccceeeeecCcc
Q 027646 163 ILPGITRKSIIDVAQSQGF-QVEERL----VTVEELLDADEVFCTGTAV 206 (220)
Q Consensus 163 ~L~GitR~~ll~~a~~~g~-~v~e~~----i~~~eL~~ade~f~tns~~ 206 (220)
.|-||.|+.+-++.+. .+ .++-|. +++..+.--|-+|+|++..
T Consensus 5 aLTGIs~~vi~eL~~~-~~RTiEirSa~N~~~~~~~~~Gd~VFlT~~~~ 52 (119)
T PF04322_consen 5 ALTGISRRVIDELKKN-HIRTIEIRSAHNVIALESLDPGDRVFLTSVSL 52 (119)
T ss_pred EEeccCHHHHHHHHhC-CceEEEEEcchheeeeecCCCCCEEEEecCCH
Confidence 5889999998877554 33 344343 4455666679999998754
No 53
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=25.25 E-value=64 Score=25.23 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.8
Q ss_pred HCCCCeEEEeecCCCceEEEcCceEEEEEE
Q 027646 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVK 150 (220)
Q Consensus 121 ~~g~de~l~ld~~~~g~v~E~~~sNif~~~ 150 (220)
..|+.|..++|+ +=.|.-+..+|+|+.+
T Consensus 171 ~~g~l~~tYLDe--dlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 171 PKGWLDTTYLDE--DLRISRGNKGSLFVLK 198 (198)
T ss_pred CceEEEEEEECC--CeEEEEcCCCCEEEeC
Confidence 577889999998 7899999999999874
No 54
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=25.06 E-value=40 Score=27.92 Aligned_cols=38 Identities=29% Similarity=0.394 Sum_probs=25.6
Q ss_pred CEEEcCCCCCCCCCchH----HHHHHHHHHhCCCeEEEEecCHHHH
Q 027646 152 NVISTPAIKGTILPGIT----RKSIIDVAQSQGFQVEERLVTVEEL 193 (220)
Q Consensus 152 ~~l~TP~l~~~~L~Git----R~~ll~~a~~~g~~v~e~~i~~~eL 193 (220)
.+.+||| ..|.||+=| |.+++.+.++ ..+|..++.+|+
T Consensus 30 ~TYitPP-G~GFlP~~TA~HHr~~il~Lv~~---al~ea~v~~~di 71 (336)
T KOG2708|consen 30 HTYITPP-GEGFLPRDTARHHRAWILGLVKQ---ALEEAGVTSDDI 71 (336)
T ss_pred ccccCCC-CCCCCcchhHHHHHHHHHHHHHH---HHHHcCCChhhC
Confidence 4567888 689999988 4556665443 245666776665
No 55
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=24.99 E-value=1.8e+02 Score=20.03 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=27.3
Q ss_pred CchHHHHHHHHHHhCCCeEEEEecCHHHH----hccceeeee
Q 027646 165 PGITRKSIIDVAQSQGFQVEERLVTVEEL----LDADEVFCT 202 (220)
Q Consensus 165 ~GitR~~ll~~a~~~g~~v~e~~i~~~eL----~~ade~f~t 202 (220)
.++.-+.+-+.+++.|++++-...+..++ .++|-++++
T Consensus 16 SS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~ 57 (95)
T TIGR00853 16 TSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLA 57 (95)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEEC
Confidence 34455677788999999998888888776 445644444
No 56
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=24.91 E-value=1.6e+02 Score=18.41 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=20.8
Q ss_pred HHHHHHHHHHCCCCeEEEeecCCCceEEEc
Q 027646 112 VLKAQSAAKAKGYSDVLYLDCVHKRYLEEV 141 (220)
Q Consensus 112 ~~~a~~~a~~~g~de~l~ld~~~~g~v~E~ 141 (220)
.-.|+..|++.+--+.++.+. ||.|-|-
T Consensus 32 i~~Ar~~a~~~~~~el~Ih~~--dG~i~~~ 59 (62)
T PF09954_consen 32 IEAARELAKNQGGGELIIHGR--DGKIREE 59 (62)
T ss_pred HHHHHHHHHhCCCcEEEEECC--CCeEEEe
Confidence 345667777776778888887 8998774
No 57
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=24.68 E-value=1.7e+02 Score=22.96 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=27.3
Q ss_pred chHHHHHHHH---HHh-CCCeEEEEecC-----------------------HHHHhccceeeeecCc
Q 027646 166 GITRKSIIDV---AQS-QGFQVEERLVT-----------------------VEELLDADEVFCTGTA 205 (220)
Q Consensus 166 GitR~~ll~~---a~~-~g~~v~e~~i~-----------------------~~eL~~ade~f~tns~ 205 (220)
|-|++..-.+ +++ .|.+++...+. .++|..||.+++.+.+
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPt 79 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPT 79 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecc
Confidence 7777765544 444 67777766653 6888999988877654
No 58
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=24.22 E-value=82 Score=21.38 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=23.6
Q ss_pred CchHHHHHHHHHHhCCCeEEEEecCHHHHh
Q 027646 165 PGITRKSIIDVAQSQGFQVEERLVTVEELL 194 (220)
Q Consensus 165 ~GitR~~ll~~a~~~g~~v~e~~i~~~eL~ 194 (220)
.|-.-+.+++.|+++|+++.+-+-....|.
T Consensus 25 ~g~~A~~I~~~A~e~~VPi~~~~~LAr~L~ 54 (82)
T TIGR00789 25 VGEVAERIIEIAKKHGIPIVEDPDLVDVLL 54 (82)
T ss_pred CCHHHHHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 567778999999999999988765555554
No 59
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=24.11 E-value=88 Score=20.68 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=29.7
Q ss_pred EEEcCCCCCCC-CCchHHH-HHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEee
Q 027646 153 VISTPAIKGTI-LPGITRK-SIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITY 216 (220)
Q Consensus 153 ~l~TP~l~~~~-L~GitR~-~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~ 216 (220)
.+|+|+.++-+ +++-.+. .+.-++++.|++.+-..+... + + .+-.|-+|+-.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~kv~~~L~elglpye~~~~~~~-----~--~--~~P~GkVP~L~~dg 58 (74)
T cd03079 2 ALYQPYEEEQILLPDNASCLAVQTFLKMCNLPFNVRCRANA-----E--F--MSPSGKVPFIRVGN 58 (74)
T ss_pred ccccCCccCeeecCCCCCHHHHHHHHHHcCCCcEEEecCCc-----c--c--cCCCCcccEEEECC
Confidence 36777765333 3344443 334457788988765533211 1 1 12238888876655
No 60
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=24.02 E-value=46 Score=20.20 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=16.1
Q ss_pred CCCCchHHHHHHHHHHhCCCeE
Q 027646 162 TILPGITRKSIIDVAQSQGFQV 183 (220)
Q Consensus 162 ~~L~GitR~~ll~~a~~~g~~v 183 (220)
.+|.|-+|+.++..++.-++.|
T Consensus 18 ~VLqgksR~vIirELqrTnLdV 39 (53)
T PF11547_consen 18 VVLQGKSRNVIIRELQRTNLDV 39 (53)
T ss_dssp HHSTTS-HHHHHHHHHHTTT-H
T ss_pred HHHcCCcHHHHHHHHHHhcccH
Confidence 4799999999998877766543
No 61
>PRK03430 hypothetical protein; Validated
Probab=23.16 E-value=46 Score=25.62 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=23.2
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHh
Q 027646 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELL 194 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~ 194 (220)
..|+|...+|+.||+-+-++ ....+++++|+
T Consensus 94 q~gvL~~~~RE~VIdR~MaL----~~~~i~Ld~lK 124 (157)
T PRK03430 94 QIQVLNLETREMVIDRVMAL----DTAEFDLEDLK 124 (157)
T ss_pred HcCCCCHHHHHHHHHHHHcC----CCCCCCHhHhh
Confidence 56899999999999876443 35577777764
No 62
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=22.87 E-value=2.2e+02 Score=19.58 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=28.4
Q ss_pred CCCCchHHHHHHHHHHhCCCeEEEEecCHHHH----hccceeeee
Q 027646 162 TILPGITRKSIIDVAQSQGFQVEERLVTVEEL----LDADEVFCT 202 (220)
Q Consensus 162 ~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL----~~ade~f~t 202 (220)
|+=.+++-+.+-+.++++|++++-...+..++ .++|=++++
T Consensus 9 G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~ 53 (96)
T cd05564 9 GMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLG 53 (96)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEC
Confidence 33345566677788999999888888888777 345644443
No 63
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=22.58 E-value=56 Score=25.07 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=24.5
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHh
Q 027646 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELL 194 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~ 194 (220)
..|+|+..+|+.||+-+-.. ....+++++++
T Consensus 92 q~gvL~~~~RE~VIdr~mal----~~~~i~Ld~lK 122 (155)
T PF04361_consen 92 QAGVLDPEQREMVIDRAMAL----DSDEISLDDLK 122 (155)
T ss_pred HcCCCCHHHHHHHHHHHHhC----CCCCCCHHHHH
Confidence 46899999999999877543 45778888875
No 64
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=22.17 E-value=1.4e+02 Score=23.08 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=29.1
Q ss_pred CCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcc
Q 027646 164 LPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAV 206 (220)
Q Consensus 164 L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~ 206 (220)
+.|.-.+.+ +.+++.|..+..-.. .+++..+|.++++++-.
T Consensus 6 ~qg~~~e~~-~~l~~~g~~v~~v~~-~~~l~~~dgiii~Gg~~ 46 (183)
T cd01749 6 LQGDFREHI-RALERLGVEVIEVRT-PEDLEGIDGLIIPGGES 46 (183)
T ss_pred ecCCcHHHH-HHHHHCCCeEEEECC-HHHhccCCEEEECCchH
Confidence 344444554 677888888777665 46788999999998643
No 65
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=21.00 E-value=2.2e+02 Score=19.17 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=18.7
Q ss_pred EEECCEEEcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCH
Q 027646 148 VVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTV 190 (220)
Q Consensus 148 ~~~~~~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~ 190 (220)
++.++++++|. + ..+.++++++|+.+++....+
T Consensus 30 ~i~~~~l~v~~-d---------~~l~~~L~~lg~~~~~~~~~f 62 (87)
T PF05194_consen 30 FIEEDELYVPY-D---------HVLEELLRKLGLEVEKVERPF 62 (87)
T ss_dssp EEETTEEEEE------------HHHHHHHHHTT-EEEEEEEE-
T ss_pred EEcCCEEEecC-c---------HHHHHHHHHCCCccEEeeecc
Confidence 45666899983 1 244566777888766554433
No 66
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.37 E-value=1.7e+02 Score=16.08 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=16.8
Q ss_pred HHhHHhhcCCCCC-CHHHHHHHHHH
Q 027646 3 MQVGAERMCMPSP-SVEQFVEAVKA 26 (220)
Q Consensus 3 L~~sa~~l~i~~~-~~~~l~~~i~~ 26 (220)
|+.-|+.+|++.. +.+++.+.+.+
T Consensus 9 Lk~~l~~~gL~~~G~K~~Li~Rl~~ 33 (35)
T PF02037_consen 9 LKEELKERGLSTSGKKAELIERLKE 33 (35)
T ss_dssp HHHHHHHTTS-STSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 6677888899876 67777666654
No 67
>PRK08349 hypothetical protein; Validated
Probab=20.28 E-value=92 Score=24.49 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEE---CCEEEcCCCCCCCCCchHHHHHHHHHHhCCC
Q 027646 114 KAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK---GNVISTPAIKGTILPGITRKSIIDVAQSQGF 181 (220)
Q Consensus 114 ~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~---~~~l~TP~l~~~~L~GitR~~ll~~a~~~g~ 181 (220)
++...|.+.|++-.+.=+. -|...+....|+.... +-.++.|- -+++++-++++++++|.
T Consensus 96 ~a~~~A~~~g~~~I~tG~~--~~d~a~~~l~nl~~~~~~~~i~i~rPL------~~~~K~eI~~~a~~~g~ 158 (198)
T PRK08349 96 KAERIAHEIGASAIITGDS--LGQVASQTLDNLMVISTATDLPVLRPL------IGLDKEEIVKIAKEIGT 158 (198)
T ss_pred HHHHHHHHcCCCEEEEecC--CchHHHHHHHHHhccccccCCeEEcCC------CCCCHHHHHHHHHHcCC
Confidence 3556788899976555433 4556777777876542 22577764 47899999999999994
Done!