Query 027646
Match_columns 220
No_of_seqs 212 out of 1339
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 22:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dqn_A Putative branched-chain 100.0 1.4E-49 4.8E-54 341.8 24.9 217 1-218 84-303 (345)
2 3dth_A Branched-chain amino ac 100.0 3E-49 1E-53 341.8 25.6 218 1-218 104-332 (372)
3 3uzo_A Branched-chain-amino-ac 100.0 5.2E-48 1.8E-52 333.1 22.3 216 1-218 99-318 (358)
4 2a1h_A Branched chain aminotra 100.0 2.3E-47 7.9E-52 330.6 25.7 216 1-218 98-327 (365)
5 2coi_A Branched chain aminotra 100.0 7.7E-47 2.6E-51 329.0 26.1 216 1-218 118-347 (386)
6 3u0g_A Putative branched-chain 100.0 6.9E-47 2.4E-51 323.1 25.0 206 1-217 82-292 (328)
7 3lul_A 4-amino-4-deoxychorisma 100.0 8.3E-47 2.8E-51 315.5 24.0 201 1-217 48-251 (272)
8 1i2k_A 4-amino-4-deoxychorisma 100.0 8.5E-47 2.9E-51 315.1 23.5 204 1-217 44-250 (269)
9 1iye_A Branched-chain amino ac 100.0 1.8E-46 6.2E-51 318.9 24.7 207 1-217 59-271 (309)
10 2eiy_A ILVE, branched-chain am 100.0 4.2E-46 1.4E-50 316.5 26.2 206 1-217 58-269 (308)
11 3dtg_A Branched-chain amino ac 100.0 2.3E-46 7.9E-51 324.8 25.0 219 1-219 104-333 (372)
12 2xpf_A 4-amino-4-deoxychorisma 100.0 8E-46 2.8E-50 312.5 21.5 203 1-217 66-271 (292)
13 3daa_A D-amino acid aminotrans 100.0 2.9E-45 1E-49 306.8 23.8 199 1-217 49-254 (277)
14 3sno_A Hypothetical aminotrans 100.0 1.3E-44 4.5E-49 307.5 19.3 202 1-217 68-295 (315)
15 3csw_A BCAT, putative branched 100.0 1.1E-41 3.7E-46 286.4 20.0 191 1-217 61-253 (285)
16 2zgi_A Putative 4-amino-4-deox 100.0 1.3E-41 4.5E-46 280.3 14.7 188 1-217 43-231 (246)
17 3qqm_A MLR3007 protein; struct 100.0 1.1E-40 3.7E-45 270.6 17.2 183 1-214 38-221 (221)
18 3ceb_A D-aminoacid aminotransf 100.0 2.1E-35 7.3E-40 235.0 14.0 165 1-208 26-194 (194)
19 2kyr_A Fructose-like phosphotr 65.5 8.7 0.0003 26.8 4.3 44 162-205 17-70 (111)
20 2r48_A Phosphotransferase syst 54.6 14 0.00047 25.5 3.7 45 161-205 13-67 (106)
21 2r4q_A Phosphotransferase syst 51.7 14 0.00047 25.5 3.3 45 161-205 13-67 (106)
22 2m1z_A LMO0427 protein; homolo 46.7 15 0.00052 25.3 2.9 44 162-205 14-67 (106)
23 3mcb_B Transcription factor BT 44.5 28 0.00095 21.2 3.5 43 122-168 5-55 (58)
24 3lkx_A Transcription factor BT 43.4 30 0.001 21.6 3.7 44 123-170 6-57 (66)
25 2bmv_A Flavodoxin; electron tr 34.9 47 0.0016 23.8 4.3 45 165-210 12-61 (164)
26 2fz5_A Flavodoxin; alpha/beta 33.7 79 0.0027 21.4 5.2 42 165-206 10-57 (137)
27 2h8b_A Insulin-like 3; insulin 31.2 4 0.00014 20.3 -1.5 17 160-176 8-24 (26)
28 3bzy_B ESCU; auto cleavage pro 25.0 45 0.0015 21.7 2.3 30 165-194 25-54 (83)
29 3tql_A Arginine-binding protei 24.4 92 0.0031 22.5 4.4 34 161-194 21-54 (227)
30 2l09_A ASR4154 protein; proto- 24.4 23 0.00078 21.9 0.7 35 162-200 18-52 (62)
31 2qho_B E3 ubiquitin-protein li 24.2 25 0.00084 20.6 0.8 22 162-183 18-39 (53)
32 5nul_A Flavodoxin; electron tr 21.8 1.2E+02 0.0041 20.6 4.4 43 165-207 9-57 (138)
33 4gvo_A LMO2349 protein; struct 20.5 95 0.0032 23.3 3.8 35 160-194 27-62 (243)
34 4gud_A Imidazole glycerol phos 20.3 1.3E+02 0.0043 22.5 4.5 32 171-203 17-48 (211)
35 3h7m_A Sensor protein; histidi 20.3 84 0.0029 22.9 3.4 35 160-194 29-63 (234)
No 1
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=1.4e-49 Score=341.76 Aligned_cols=217 Identities=42% Similarity=0.709 Sum_probs=194.7
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCC-CccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (220)
+||.+||+.|+||.++.++|.+.+.+++++|+.|+|+.. .+.+|||++++|+++.+|+.|+..++++|++.|+++++..
T Consensus 84 ~RL~~Sa~~L~i~~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~ 163 (345)
T 4dqn_A 84 ERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKG 163 (345)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSCCCSEEEEEEEEEEECCSCTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCCCCCCeEEEEEEEECcccccc
Confidence 599999999999955999999999999999988777532 3589999998887777888776678899999998877765
Q ss_pred CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEE-ECCEEEcCC
Q 027646 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVV-KGNVISTPA 158 (220)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~-~~~~l~TP~ 158 (220)
+.+++++.+++++.|..|++++++||..||+++++++++|+++|+||+||+|..++|+|+|++++|||++ +||+|+|||
T Consensus 164 ~~~gv~l~~~~~~~R~~~~~~~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~g~l~TP~ 243 (345)
T 4dqn_A 164 GLAPTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITPL 243 (345)
T ss_dssp SCCCEEEEECTTCCSSCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSCEEEECTTTSCBEEEETTEEEEEEETTCEEEECC
T ss_pred CCCCEEEEEccceEecCCCccccccccccCHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEcCCceEEEEecCCEEEeCC
Confidence 6677888887657899998899999945999999999999999999999999622499999999999998 899999999
Q ss_pred CCCCCCCchHHHHHHHHHHh-CCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeCC
Q 027646 159 IKGTILPGITRKSIIDVAQS-QGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 159 l~~~~L~GitR~~ll~~a~~-~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~~ 218 (220)
+.++|+||||+.||++|++ +|++|+|+.++++||..|||+|+|||++||+||.+|++++
T Consensus 244 -~~~iL~GitR~~vl~la~~~~g~~v~e~~i~~~el~~adevf~t~t~~~i~PV~~Id~~~ 303 (345)
T 4dqn_A 244 -SPSILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGD 303 (345)
T ss_dssp -CTTSCCCHHHHHHHHHHHHTTCCEEEECCCBTTCGGGEEEEEEEETTTEEEEEEEEEETT
T ss_pred -CCCccHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHhhhHHhhhcchhHEEEEEEECccc
Confidence 8999999999999999999 9999999999999999999999999999999999999974
No 2
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=3e-49 Score=341.79 Aligned_cols=218 Identities=42% Similarity=0.803 Sum_probs=199.2
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCC-CCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS-GKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (220)
+||.+||++|+||.++.++|.+.+.++++.|+.|+|+. ..+.+|||++++++++.+|+.|+..++++|++.|.++++..
T Consensus 104 ~RL~~Sa~~L~mp~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYiRp~~~~~~~~~G~~p~~~~~~~i~~~p~~~y~~~ 183 (372)
T 3dth_A 104 ARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKG 183 (372)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCSSCSCCSEEEEEEEEEEESCSSSC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEcCCCcCCcCCCCCeEEEEEEeeCchhhcc
Confidence 59999999999995589999999999999999888765 35789999988877767888877778899999999888877
Q ss_pred CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECC----EEE
Q 027646 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VIS 155 (220)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~----~l~ 155 (220)
|.+++++.+++++.|..|+.++++|+..||+++++++++|+++|+||+||+|..++|+|+|++++|||+++++ +|+
T Consensus 184 g~~~v~l~v~~~~~R~~p~g~~~~K~~gNY~~~~la~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~~~g~~l~ 263 (372)
T 3dth_A 184 GIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLV 263 (372)
T ss_dssp SSSCEEEEECSSCCSCCTTSSTTSCCHHHHHTTHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESCGGGCEEE
T ss_pred CCccEEEEEccceeccCCCcccchhhHhhhHHHHHHHHHHHHcCCCEEEEEcCCCCCEEEEcCceeEEEEECCCCceEEE
Confidence 8888988877668899998899999966999999999999999999999999534799999999999999998 999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhcc------ceeeeecCcceeEEeEEEeeCC
Q 027646 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 156 TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~a------de~f~tns~~gi~pV~~i~~~~ 218 (220)
|||++.++|+||||+.||++|+++|++|+|+.++++||.+| ||+|+|||+.+|+||.+|++++
T Consensus 264 TP~l~~~iL~GITR~~vl~la~~~G~~v~Er~i~~~eL~~a~~~g~~dEvf~tgTa~~i~PV~~Id~~~ 332 (372)
T 3dth_A 264 TPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHD 332 (372)
T ss_dssp ECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETT
T ss_pred ECCCCCCcCHHHHHHHHHHHHHHCCCeEEEEECCHHHHHhhhhcCCccEEEEecccceEEEEEEEccCC
Confidence 99999999999999999999999999999999999999999 9999999999999999999874
No 3
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=5.2e-48 Score=333.12 Aligned_cols=216 Identities=39% Similarity=0.691 Sum_probs=193.8
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCC-CccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (220)
+||.+||++|+||.++.++|.+.+.++++.|+.|+|..+ .+.+|||++++++++.+|+.|+..+.+++++.|.++++..
T Consensus 99 ~RL~~Sa~~L~ip~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~~~~~~i~~~P~~~~~~~ 178 (358)
T 3uzo_A 99 ARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKG 178 (358)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCSEEEEEEEEEEECCSSCS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccCCCCCeEEEEEEecChhhhhc
Confidence 599999999999955999999999999999988776532 3579999999888777888876678888999998888877
Q ss_pred CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEE-CCE-EEcC
Q 027646 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK-GNV-ISTP 157 (220)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~-~~~-l~TP 157 (220)
|.+++++.+++ ++|..|..++++|++.||+++++++++|+++|+||+||+|.+++|+|+|++++|||+++ ||+ |+||
T Consensus 179 g~~~v~l~~~~-~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld~~~~g~V~E~~~sNif~v~~dg~~l~TP 257 (358)
T 3uzo_A 179 GLTPTNFITSD-YDRAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTP 257 (358)
T ss_dssp SSCCEEEECCS-CCSSCTTSSTTSCBHHHHHHHHHHHHHHHHTTCSEECCBCTTTSCBBCBCSSSEEEEEETTSCEEEEE
T ss_pred CCccEEEEEEe-eeccCCCccccccchhhhHHHHHHHHHHHHcCCCEEEEEeCCCCCeEEEcCCeeEEEEECCCeEEEEC
Confidence 88888888764 78888888899996569999999999999999999999997223999999999999995 788 9999
Q ss_pred CCCCCCCCchHHHHHHHHHHh-CCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeCC
Q 027646 158 AIKGTILPGITRKSIIDVAQS-QGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 158 ~l~~~~L~GitR~~ll~~a~~-~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~~ 218 (220)
| +.++|+||||+.|+++|++ +|++|+|+.++++||..|||+|+|||++||+||.+|++++
T Consensus 258 ~-~~~iL~GItR~~vl~la~~~~g~~v~e~~i~~~eL~~adEvf~t~t~~~i~PV~~Id~~~ 318 (358)
T 3uzo_A 258 Q-SPSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGD 318 (358)
T ss_dssp C-CTTSCCCHHHHHHHHHHHHTTCCEEEEECCBTTCGGGEEEEEEECTTTSSEEEEEEEETT
T ss_pred C-cCCcccCHHHHHHHHHHHhhcCCeEEEEECCHHHHHhhcceeEEcCcceEEEEEEECccc
Confidence 9 8899999999999999999 9999999999999999999999999999999999999974
No 4
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=2.3e-47 Score=330.65 Aligned_cols=216 Identities=38% Similarity=0.672 Sum_probs=191.1
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccCC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (220)
+||.+||++|+|+.++.++|.+.+.++++.|+.|+|......+|||++++++++.+|+.|+..++++|++.|+++++..|
T Consensus 98 ~RL~~Sa~~l~~~~~~~~~l~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~g 177 (365)
T 2a1h_A 98 DRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGG 177 (365)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSSS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCcEEEEEEEECccccccc
Confidence 59999999999995489999999999999988666543234789999998776678887767888999999988877666
Q ss_pred -ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEe-ecCCCceEEEcCceEEEEEE---CCE--
Q 027646 81 -IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYL-DCVHKRYLEEVSSCNIFVVK---GNV-- 153 (220)
Q Consensus 81 -~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~l-d~~~~g~v~E~~~sNif~~~---~~~-- 153 (220)
.+++++.+.+.+.|..++.++++|+..||+.+++++++|+++|+||+||+ |+ +|+|+|++++|||+++ ||+
T Consensus 178 ~~~~v~l~~~~~~~R~~~~~~~~~Kt~~ny~~~~la~~eA~~~G~de~L~l~d~--~G~V~E~~~sNif~v~~~~dg~~~ 255 (365)
T 2a1h_A 178 SVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGP--DHQLTEVGTMNIFVYWTHEDGVLE 255 (365)
T ss_dssp SCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETT--TTEEEEETTEEEEEEEECTTSCEE
T ss_pred cccceEEEEccccccCCCCccchhchhhccHHHHHHHHHHHHcCCCeEEEEECC--CCeEEEcCceEEEEEEecCCCcEE
Confidence 67788887765678888888999995599999999999999999999999 76 8999999999999997 675
Q ss_pred EEcCCCCCCCCCchHHHHHHHHHHhC-CCeEEEEecCHHHHhcc------ceeeeecCcceeEEeEEEeeCC
Q 027646 154 ISTPAIKGTILPGITRKSIIDVAQSQ-GFQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 154 l~TP~l~~~~L~GitR~~ll~~a~~~-g~~v~e~~i~~~eL~~a------de~f~tns~~gi~pV~~i~~~~ 218 (220)
|+|||++.++|+||||+.||++|+++ |++|+|+.++++||..| ||+|+|||++||+||.+|++++
T Consensus 256 l~TP~l~~~iL~GITR~~vl~la~~~~G~~v~Er~i~~~eL~~A~~~g~~dEvf~tnt~~~i~PV~~i~~~~ 327 (365)
T 2a1h_A 256 LVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKD 327 (365)
T ss_dssp EEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEEEEETT
T ss_pred EEeCCCCCCccccHHHHHHHHHHHhcCCCceEEEeCCHHHHHHHHhcCCccEEEEcCCeeEEEEEEEEEeCC
Confidence 99999999999999999999999995 99999999999999999 9999999999999999999543
No 5
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=7.7e-47 Score=328.97 Aligned_cols=216 Identities=38% Similarity=0.649 Sum_probs=189.6
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccCC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (220)
+||.+||++|+||.++.++|.+.+.++++.|+.|+|....+.+|||++++|+++.+|+.|+..++++|++.|+++++..|
T Consensus 118 ~RL~~Sa~~l~~p~~~~e~~~~~i~~lv~~~~~~vp~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~y~~~~ 197 (386)
T 2coi_A 118 DRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSG 197 (386)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCSSSSCEEEEEEEEEECCCSCSCSCCSEEEEEEEEEEECCCC---
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEEECccccccc
Confidence 59999999999995489999999999999998777653345899999998777678888777889999999988877656
Q ss_pred -ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEee-cCCCceEEEcCceEEEEEE---CC--E
Q 027646 81 -IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLD-CVHKRYLEEVSSCNIFVVK---GN--V 153 (220)
Q Consensus 81 -~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld-~~~~g~v~E~~~sNif~~~---~~--~ 153 (220)
.+++++.+.+.+.|..|..+..+|+..||+.+++++++|+++|+||+||+| . +|+|+|++++|||+++ || +
T Consensus 198 ~~~~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~~G~de~L~ld~~--~g~V~E~~~sNiF~v~~~~~g~~~ 275 (386)
T 2coi_A 198 TFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGE--DHQITEVGTMNLFLYWINEDGEEE 275 (386)
T ss_dssp --CCEEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHTTTCSEEEEEETT--TTEEEEETTEEEEEEEECTTSCEE
T ss_pred ccccEEEEEcccccccCCCcccccccccChHHHHHHHHHHHHcCCCEEEEEECC--CCEEEEeCCceEEEEEEcCCCCEE
Confidence 677888777655677777778899855999999999999999999999999 6 8999999999999997 88 9
Q ss_pred EEcCCCCCCCCCchHHHHHHHHHHh-CCCeEEEEecCHHHHhcc------ceeeeecCcceeEEeEEEeeCC
Q 027646 154 ISTPAIKGTILPGITRKSIIDVAQS-QGFQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLG 218 (220)
Q Consensus 154 l~TP~l~~~~L~GitR~~ll~~a~~-~g~~v~e~~i~~~eL~~a------de~f~tns~~gi~pV~~i~~~~ 218 (220)
|+|||++.++|+||||+.||++|++ .|++|+|+.++++||.+| ||+|+|||+++|+||.+|++++
T Consensus 276 l~TP~l~~~iL~GITR~~vl~la~~~~G~~V~Er~i~~~eL~~A~~~g~~dEvF~tgTa~~i~PV~~I~~~~ 347 (386)
T 2coi_A 276 LATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKG 347 (386)
T ss_dssp EEECCCSSSSCCCHHHHHHHHHHHHHCSSEEEECCCBHHHHHHHHTTTCEEEEEEEETTTEEEEEEEEEESS
T ss_pred EEECCCCCCccHHHHHHHHHHHHHhccCCcEEEEECCHHHHHHHHhcCCccEEEEecceeEEEEEEEEeeCC
Confidence 9999999999999999999999999 899999999999999999 9999999999999999999554
No 6
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=6.9e-47 Score=323.15 Aligned_cols=206 Identities=31% Similarity=0.437 Sum_probs=178.4
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCC-CeeEEEEEecCccccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAP-EYTFLIYVSPVGNYFK 78 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~-~~~~~i~~~p~~~~~~ 78 (220)
+||.+||+.|+|+.| +.++|.+.+.+++++|+. .++|||++++++.+.+|+.|.. .+++++++.|++.++.
T Consensus 82 ~RL~~Sa~~l~i~~p~~~~~l~~~i~~lv~~n~~-------~~~~iR~~vtrg~~~~g~~p~~~~~~~~i~~~p~~~~~~ 154 (328)
T 3u0g_A 82 KRLLNSAKIFQMDVPFDQETLEAAQRDVVRENKL-------ESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLG 154 (328)
T ss_dssp HHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-------SSEEEEEEEEECSSCCSTTCCCCCEEEEEEEEECC----
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEEEcCCCCC
Confidence 599999999999987 999999999999999863 5689999887665567876543 5788888888765442
Q ss_pred CC--ccceEEEeecceeecCCCC-CCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEE
Q 027646 79 EG--IAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIS 155 (220)
Q Consensus 79 ~g--~~~~~l~~~~~~~r~~~~~-l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~ 155 (220)
.+ .+++++.++ ++.|..+++ ++++|++.||+++++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+
T Consensus 155 ~~~~~~gv~l~~~-~~~R~~~~~~~~~~K~t~nyl~~vla~~eA~~~G~~e~l~ld~--~g~v~E~~~sNif~v~~g~l~ 231 (328)
T 3u0g_A 155 EEGLAKGIRVKTS-SFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGENFFLVNRGKLY 231 (328)
T ss_dssp HHHHHHCEEEEEC-SSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECT--TSCEEEESSSEEEEEETTEEE
T ss_pred hhhhcCCEEEEEe-eeeecCCCCcccchhhhhhhHHHHHHHHHHHHCCCCEEEEECC--CCcEEEcCceeEEEEECCEEE
Confidence 11 134666665 467877776 799995469999999999999999999999998 899999999999999999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 156 TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
|||++. +|+||||+.++++|+++|++|+|+.++++||..|||+|+|||++||+||++||++
T Consensus 232 TP~~~~-iL~GitR~~vl~~a~~~g~~v~e~~i~~~eL~~adevf~tns~~~v~PV~~Id~~ 292 (328)
T 3u0g_A 232 TPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIRELDNR 292 (328)
T ss_dssp ECCSSS-SCCCHHHHHHHHHHHHTTCCEEECCCCHHHHHTCSEEEEEETTTEEEEEEEETTE
T ss_pred eCCccc-cchHHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCCEEEEEcchhhEEEEEEECCE
Confidence 999987 9999999999999999999999999999999999999999999999999999875
No 7
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=100.00 E-value=8.3e-47 Score=315.53 Aligned_cols=201 Identities=25% Similarity=0.354 Sum_probs=174.9
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCC--CeeEEEEEecCcccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAP--EYTFLIYVSPVGNYF 77 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~--~~~~~i~~~p~~~~~ 77 (220)
+||.+||+.|+|+.| +.+++.+.+.+++++|+. ...|||++++++.+.+|+.++. .|+++++ .|++..
T Consensus 48 ~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~~-------~~~~irl~v~rg~~~~g~~~~~~~~~~~~~~-~p~~~~- 118 (272)
T 3lul_A 48 ERLGNSARQLGIPFEISFDDWFEHLIQKIQKDNL-------YHGGIKAILSGGPASRGLAERGQVSQLIFQT-FNYSIQ- 118 (272)
T ss_dssp HHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHTTC-------SSEEEEEEEECCBCCSSTTCCCSSEEEEEEE-ECCCCC-
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEecCCccCcCCCCCCCcEEEEE-ECCCCc-
Confidence 599999999999998 999999999999998863 4567887776554557776543 4666666 555421
Q ss_pred cCCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcC
Q 027646 78 KEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (220)
Q Consensus 78 ~~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP 157 (220)
..++++.+. +++|..+++++++||+ ||+++++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||
T Consensus 119 ---~~~v~l~~~-~~~r~~~~~~~~~Kt~-nyl~~~la~~~A~~~G~de~L~ld~--~g~v~E~~~sNif~~~~g~l~TP 191 (272)
T 3lul_A 119 ---KHPVRLISI-NWLRDKANPLYQLKSV-NYLEAIIAQRQAIAVGADDALFFNT--ENHVTETTCANLFLIENNILYTP 191 (272)
T ss_dssp ---CSCEEEEEE-EEEECTTCGGGGSCBS-CCHHHHHHHHHHHHTTCSEEEEEET--TSBEEEESSCEEEEEETTEEEEC
T ss_pred ---cccEEEEEE-eEEecCCCcccchhhh-ccHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCCeEEEEEECCEEECC
Confidence 123566554 5788877788999996 9999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 158 ~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
|++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++||++
T Consensus 192 ~l~~~iL~GitR~~ll~la~~~g~~v~e~~i~~~el~~adevf~~ns~~~v~PV~~id~~ 251 (272)
T 3lul_A 192 RVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIEDADAVFLTNSLQGIRRVLSLDNI 251 (272)
T ss_dssp CGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBHHHHHTCSEEEEEETTTEEEEEEEETTE
T ss_pred CCccCcCcCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEEcCchhEEEEEEECCE
Confidence 999999999999999999999999999999999999999999999999999999999875
No 8
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=100.00 E-value=8.5e-47 Score=315.13 Aligned_cols=204 Identities=20% Similarity=0.270 Sum_probs=175.9
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCccccc
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYFK 78 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~ 78 (220)
+||.+||+.|+|+.|+.++|.+.+.++++.+. ..|+|++++++.+.+|+.|+ ..|++++.+.|++.++.
T Consensus 44 ~RL~~Sa~~l~~~~~~~~~l~~~i~~~~~~~~---------~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~ 114 (269)
T 1i2k_A 44 QRLQDACQRLMISCDFWPQLEQEMKTLAAEQQ---------NGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYD 114 (269)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHC---------SEEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCC---------CeEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcch
Confidence 59999999999998788999999999988642 45788777665455677654 47889999999876431
Q ss_pred C-CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcC
Q 027646 79 E-GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (220)
Q Consensus 79 ~-g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP 157 (220)
. ...++++.+.+ .+|..++.++++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||
T Consensus 115 ~~~~~g~~l~~~~-~~~~~~~~~~~~Kt~-n~~~~~~a~~~A~~~G~de~l~ld~--~G~v~E~s~sNif~v~~g~l~TP 190 (269)
T 1i2k_A 115 RLRNEGITLALSP-VRLGRNPHLAGIKHL-NRLEQVLIRSHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTP 190 (269)
T ss_dssp HHHHHCEEEEECS-CCBCCCTTTTBCCBS-CCHHHHHHHHHHTTSSCSEEEEEBT--TSBEEECSSSEEEEEETTEEEEE
T ss_pred hhhcCCeEEEEec-eecCCCCcccCcchh-hhHHHHHHHHHHHHCCCCEEEEECC--CCcEEEcCceEEEEEECCEEECC
Confidence 1 12345666653 566666678899996 8999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 158 ~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
|++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||.+|+++
T Consensus 191 ~~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfltns~~gv~pV~~id~~ 250 (269)
T 1i2k_A 191 RLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCACGDV 250 (269)
T ss_dssp CCSSSSBCCHHHHHHHHHHHHSSSEEEEECCBHHHHHTCSEEEEECSSSCEEEEEEETTE
T ss_pred CCccCccCCHHHHHHHHHHHHcCCeEEEEECCHHHHhhCCEEEEcCChhheEEEEEECCE
Confidence 999999999999999999999999999999999999999999999999999999999864
No 9
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=1.8e-46 Score=318.90 Aligned_cols=207 Identities=33% Similarity=0.533 Sum_probs=180.1
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCcccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (220)
+||.+||+.|+|+.| +.+++.+.+.++++.|+. +..|||++++++++.+|+.|+ ..+++++++.|++.++
T Consensus 59 ~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~-------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~ 131 (309)
T 1iye_A 59 QRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYL 131 (309)
T ss_dssp HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHTTC-------SSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCC-------CCEEEEEEEEeCCCccCCCCCCCCCcEEEEEEEEcCccC
Confidence 599999999999976 899999999999998862 568999888766556777654 3678888888877654
Q ss_pred cCC--ccceEEEeecceeecCCCC-CCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEE
Q 027646 78 KEG--IAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVI 154 (220)
Q Consensus 78 ~~g--~~~~~l~~~~~~~r~~~~~-l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l 154 (220)
..+ ..++++.+. ++.|..++. ++++|++.||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|
T Consensus 132 ~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K~~~ny~~~~la~~~A~~~G~de~l~ld~--~G~V~Egs~sNif~v~~g~l 208 (309)
T 1iye_A 132 GAEALEQGIDAMVS-SWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAGENLFEVKDGVL 208 (309)
T ss_dssp CTTHHHHCEEEEEC-SSCCCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECT--TSBEEEETTBEEEEEETTEE
T ss_pred CcccccCCeEEEEe-eeeccCCCCCCccccchhhhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCceEEEEEECCEE
Confidence 322 135666665 356777665 489998669999999999999999999999998 89999999999999999999
Q ss_pred EcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 155 STPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 155 ~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+|||++.++|+||||+.|+++|+++|++|+|+.++++||.+|||+|+|||++||+||++|+++
T Consensus 209 ~TP~l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~eL~~adevfltns~~gv~PV~~id~~ 271 (309)
T 1iye_A 209 FTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGI 271 (309)
T ss_dssp EECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCBTTHHHHCSEEEEEETTTEEEEEEEETTE
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHhhCcEEEEccCCCEEEEEEEECCE
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 10
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=4.2e-46 Score=316.49 Aligned_cols=206 Identities=33% Similarity=0.421 Sum_probs=176.0
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCcccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYF 77 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~ 77 (220)
+||.+||+.|+|+.| +.+++.+.+.++++.++. +..|||++++++++.+|+.|. ..+++++++.|++.++
T Consensus 58 ~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~~~~~-------~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~ 130 (308)
T 2eiy_A 58 KRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGY-------RSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYL 130 (308)
T ss_dssp HHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-------SSEEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC----
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CcEEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccC
Confidence 599999999999977 899999999999998862 468999888766556777654 4678888888877643
Q ss_pred cCC--ccceEEEeecceeecCCCC-CCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEE
Q 027646 78 KEG--IAPINLVVEHELHRATPGG-TGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVI 154 (220)
Q Consensus 78 ~~g--~~~~~l~~~~~~~r~~~~~-l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l 154 (220)
..+ .+++++.+++ +.|..++. ++++||++||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|
T Consensus 131 ~~~~~~~gv~l~~~~-~~r~~~~~~~~~~Kt~~ny~~~~la~~~A~~~G~de~l~ld~--~G~V~Egs~sNif~v~~g~l 207 (308)
T 2eiy_A 131 GEEAVRKGARLITSS-WARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGSGENLFFVRDGVI 207 (308)
T ss_dssp ----CCSCEEEEECS-SCBCCTTTSCTTSCBGGGHHHHHHHHHHHHHTTCSEEEEEBT--TSSEEEESSCEEEEEETTEE
T ss_pred CcccccCCeEEEEec-ceecCCCCcCcceehhhhHHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCceEEEEEECCEE
Confidence 222 2356666653 56766654 589999877999999999999999999999998 89999999999999999999
Q ss_pred EcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 155 STPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 155 ~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
+|||++. +|+||||+.|+++|+++|++|+|+.++++||..|||+|+|||++||+||.+|+++
T Consensus 208 ~TP~~~~-iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv~pV~~id~~ 269 (308)
T 2eiy_A 208 YALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWR 269 (308)
T ss_dssp EEECCTT-SCCCHHHHHHHHHHHHTTCCEEEECCCHHHHHTCSEEEEEETTTEEEEEEEETTE
T ss_pred EeCCcCC-CCchHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEccCcceEEEEEEEcCE
Confidence 9999988 9999999999999999999999999999999999999999999999999999864
No 11
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=2.3e-46 Score=324.85 Aligned_cols=219 Identities=41% Similarity=0.789 Sum_probs=195.0
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCC-CccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSG-KGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~-~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (220)
+||.+||+.|.||.++.+.+...+.++++.+..++|... ...+|||++++++++.+|+.|...+.+++++.|...++..
T Consensus 104 ~Rl~~Sa~~l~iP~~~~e~~~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~p~~~~~~~ii~~p~~~~~~~ 183 (372)
T 3dtg_A 104 ARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKG 183 (372)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSCSCCSEEEEEEEEEEESCSSTT
T ss_pred HHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCcCCCCCceeeeEeccccccccc
Confidence 499999999999987788899999999998887776543 3689999999888777888887788888899988877776
Q ss_pred CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEE----ECCEEE
Q 027646 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVV----KGNVIS 155 (220)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~----~~~~l~ 155 (220)
+..+..+.+...+.|..|......|.++||+++++++++|+++|+||+||+|..++|+|+|++++||||| |+|+|+
T Consensus 184 ~~~~~~~~~~~~~~R~~p~~~~~~K~~gNY~~~~la~~eA~~~G~deal~Ld~~~~g~V~E~~~sNiF~V~~~~kdg~li 263 (372)
T 3dtg_A 184 GIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLV 263 (372)
T ss_dssp SSSCEEEEECSSCCSCCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESCGGGCEEE
T ss_pred CcccceeecccceeecCcCCcchHHhcCCcchhhhHHHHHHhcCcchhhhhccccccceeecCceEEEEEEecCCCceEE
Confidence 7766666666667888888887888888999999999999999999999999544889999999999999 678999
Q ss_pred cCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhcc------ceeeeecCcceeEEeEEEeeCCC
Q 027646 156 TPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGK 219 (220)
Q Consensus 156 TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~a------de~f~tns~~gi~pV~~i~~~~~ 219 (220)
|||++.++|+||||+.||++|+++|++|+||.++++||..| ||+|+|||..+|+||.+|+++|+
T Consensus 264 TPpl~~~iL~GITR~sVi~LA~~~Gi~V~Er~it~~El~~A~~~~~~dEvF~tGTaa~I~PV~~Id~~~~ 333 (372)
T 3dtg_A 264 TPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDG 333 (372)
T ss_dssp ECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTE
T ss_pred eCCccccccccHHHHHHHHHHHHCCceEEEEeCCHHHHHHHhhcCCCcEEEECCCcceEEEEEEEecCCc
Confidence 99999999999999999999999999999999999999998 99999999999999999998853
No 12
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=100.00 E-value=8e-46 Score=312.47 Aligned_cols=203 Identities=20% Similarity=0.259 Sum_probs=173.1
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCC--CCeeEEEEEecCccccc
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA--PEYTFLIYVSPVGNYFK 78 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~--~~~~~~i~~~p~~~~~~ 78 (220)
+||.+||+.|+|+.| .++|.+.+.++++... ..|+|++++++.+.+|+.|+ ..|++++.+.|++.++.
T Consensus 66 ~RL~~Sa~~l~~~~~-~~~l~~~i~~~v~~~~---------~~~iR~~v~rg~~~~g~~p~~~~~~~~~i~~~p~~~~~~ 135 (292)
T 2xpf_A 66 ARLEEGCRRLAIPLD-TAALRQELLAFCAALG---------DGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPE 135 (292)
T ss_dssp HHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHC---------SEEEEEEEECCBCCSSSSCCTTCCCEEEEEEECCCCCCH
T ss_pred HHHHHHHHhcCCCCC-HHHHHHHHHHHHHhCC---------CcEEEEEEEecCCCCCCCCCCCCCcEEEEEEEECCccch
Confidence 599999999999987 8889999999988742 35788777644445677654 36788999999876441
Q ss_pred C-CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcC
Q 027646 79 E-GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTP 157 (220)
Q Consensus 79 ~-g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP 157 (220)
. ...++++.+.+ .+|...+.+.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||
T Consensus 136 ~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~la~~~A~~~G~de~L~ld~--~G~V~Egs~sNif~v~~g~l~TP 211 (292)
T 2xpf_A 136 RHWQQGVRLFACR-TRLAEQPLLAGLKHL-NRLEQVLARAEWSDAGHAEGLMLDV--HERVVEGVFSNLLLVLDGTLVAP 211 (292)
T ss_dssp HHHHTCEEEEECC-CCBCCCTTTTBCCBS-CCHHHHHHHTTCCCTTCSEEEEEBT--TCCEEEESSSEEEEEETTEEEEE
T ss_pred hhccCCeEEEEee-eeccCCCCCCCcchh-hhHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEEeC
Confidence 1 11345566654 455555567899996 8999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 158 AIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 158 ~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
|++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++|+++
T Consensus 212 pl~~~iL~GitR~~vl~~a~~~G~~v~E~~i~~~eL~~adevfltns~~gv~PV~~id~~ 271 (292)
T 2xpf_A 212 DLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNSQFGIWPVRALDEH 271 (292)
T ss_dssp CCSSSSBCCHHHHHHHHHHHHTTCCEEEECBCHHHHHTCSEEEEEETTTEEEEEEEETTE
T ss_pred CCCCccCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHhCCEEEEEcCcccEEEEEEECCE
Confidence 999999999999999999999999999999999999999999999999999999999875
No 13
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=2.9e-45 Score=306.84 Aligned_cols=199 Identities=24% Similarity=0.338 Sum_probs=166.9
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCC-C--CCCeeEEEEEecCccc
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLA-P--APEYTFLIYVSPVGNY 76 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~-~--~~~~~~~i~~~p~~~~ 76 (220)
+||.+||+.|+|+.| +.++|.+.+.+++++|+. .++.+|+++ ++|.+ .+++. | ...|++++++.|++.+
T Consensus 49 ~RL~~Sa~~l~i~~~~~~~~l~~~i~~li~~n~~-----~~~~lri~v-trG~~-~r~~~~p~~~~~~~~~i~~~p~~~~ 121 (277)
T 3daa_A 49 DRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL-----NTGHIYFQV-TRGTS-PRAHQFPENTVKPVIIGYTKENPRP 121 (277)
T ss_dssp HHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTC-----CSEEEEEEE-ESCBC-SCCSSCCSSCCCCEEEEEEEECCCC
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC-----CcEEEEEEE-EecCC-CcCCCCCCCCCCcEEEEEEEECCCC
Confidence 599999999999987 899999999999999874 234445442 24444 34544 2 3478899999987632
Q ss_pred ---ccCCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCE
Q 027646 77 ---FKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV 153 (220)
Q Consensus 77 ---~~~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~ 153 (220)
+.+|+ ++.+.++ .| +.++++||+ ||+.+++++++|+++|+||+||+| +|+|+|++++|||+++||+
T Consensus 122 ~~~~~~gv---~~~~~~~-~r---~~~~~~Kt~-nyl~~~la~~eA~~~g~~e~l~l~---~g~v~E~~~sNif~~~~~~ 190 (277)
T 3daa_A 122 LENLEKGV---KATFVED-IR---WLRCDIKSL-NLLGAVLAKQEAHEKGCYEAILHR---NNTVTEGSSSNVFGIKDGI 190 (277)
T ss_dssp HHHHHHCE---EEEEEEC-CC---CSCTTSCBS-CCHHHHHHHHHHHHTTCSEEEEEE---TTEEEEETTBEEEEEETTE
T ss_pred hHHHhCCe---EEEEecC-cc---ccCCCcchh-hhHHHHHHHHHHHHCCCCEEEEEc---CCEEEEcCceEEEEEECCE
Confidence 23454 4444332 22 346899996 999999999999999999999996 7999999999999999999
Q ss_pred EEcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 154 ISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 154 l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
|+|||++.++|+||||+.++++|+++|++|+|+.++++||.+|||+|+|||++||+||++||++
T Consensus 191 l~TP~~~~~iL~GitR~~vl~~~~~~g~~v~e~~i~~~el~~adevf~~ns~~~i~pV~~id~~ 254 (277)
T 3daa_A 191 LYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEIDGK 254 (277)
T ss_dssp EEECCSSTTSCCCHHHHHHHHHHHHTTCCEECCCCBHHHHHTCSEEEEEETTTEEEEEEEETTE
T ss_pred EECCCCcCCCCccHHHHHHHHHHHHcCCeEEEEeCCHHHHHhcCeeeeecChhhEEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999999999875
No 14
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.3e-44 Score=307.46 Aligned_cols=202 Identities=24% Similarity=0.367 Sum_probs=137.9
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccc---
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYF--- 77 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~--- 77 (220)
+||.+||+.|+|+.|+.+++.+.+.++++.+.. ..+.++.|||++++++.+.+| .|++++++.|++.++
T Consensus 68 ~RL~~Sa~~L~i~~p~~~~l~~~i~~~v~~~~~---~n~~~~~~iRl~vtrG~~~~g-----~p~~~v~~~p~~~~~~~~ 139 (315)
T 3sno_A 68 ERFKASAALLGLPEPILEDWEKATQMGIESWYS---HPNAGEASCTWTLSRGRSSTG-----LASGWLTITPVSSDKLAQ 139 (315)
T ss_dssp HHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT---C--CCCEEEEEEEECCBTTTC-----CCEEEEEEEECCHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhcc---cCCCCCEEEEEEEEeCCCCCC-----CCEEEEEEEECCCcchhh
Confidence 599999999999998899999999999997321 001256789988875543333 367888888876432
Q ss_pred -cCCccceEEEeecc-e---------------------eecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCC
Q 027646 78 -KEGIAPINLVVEHE-L---------------------HRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVH 134 (220)
Q Consensus 78 -~~g~~~~~l~~~~~-~---------------------~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~ 134 (220)
.+|++ +.+.+. + .+..|+.++++||+ ||+++++++++|+++|+||+||+|+
T Consensus 140 ~~~gv~---~~~~~~~~~~~~~~~~~~~~~r~~~s~~~~~~~p~~l~~~Kt~-nyl~~vla~~~A~~~G~de~l~l~~-- 213 (315)
T 3sno_A 140 REHGVS---VMTSSRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTDG-- 213 (315)
T ss_dssp HHHCEE---EEEEEC------------------------------------------------------CEEEEEEET--
T ss_pred hcCCEE---EEEeccccccccccccccccccccccccccccCcccccCcchh-ccHHHHHHHHHHHHcCCCEEEEEeC--
Confidence 34543 333321 0 01234457899997 9999999999999999999999998
Q ss_pred CceEEEcCceEEEEEECCEEEcCCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEE
Q 027646 135 KRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214 (220)
Q Consensus 135 ~g~v~E~~~sNif~~~~~~l~TP~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i 214 (220)
+| |+|++++|||+++||+|+|||++.++|+||||+.++++|+++|++++|+.++++||.+|||+|+|||++||+||++|
T Consensus 214 ~G-v~E~s~sN~f~~~~g~l~TPp~~~~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfl~ns~~gv~pV~~i 292 (315)
T 3sno_A 214 DR-VLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRL 292 (315)
T ss_dssp TE-EEEESSSEEEEEETTEEEEECCC------HHHHHHHHHHHHTTCEEEEECCBHHHHHHSSEEEEEETTTEEEEEEEE
T ss_pred CC-cEEcCCeeEEEEECCEEEcCCCCCCcChhHHHHHHHHHHHHcCCEEEEEECCHHHHHhCCeeEEEcCcccEEEEEEE
Confidence 89 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q 027646 215 TYL 217 (220)
Q Consensus 215 ~~~ 217 (220)
|++
T Consensus 293 d~~ 295 (315)
T 3sno_A 293 DGH 295 (315)
T ss_dssp SSS
T ss_pred CCE
Confidence 986
No 15
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.1e-41 Score=286.36 Aligned_cols=191 Identities=28% Similarity=0.343 Sum_probs=160.3
Q ss_pred ChHHhHHhhcCCCCC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccC
Q 027646 1 MRMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (220)
+||.+||+.|+|+.| +.+++.+.+.++++.++ +..|+|+++. +. + .++++++.|++.++
T Consensus 61 ~RL~~Sa~~l~~~~p~~~~~l~~~i~~~~~~~~--------~~~~iR~~v~-~~---~------~~~~i~~~p~~~~~-- 120 (285)
T 3csw_A 61 TRLKRSADFFNLPLSLSFDEFTKVLKAGADEFK--------QEVRIKVYLF-PD---S------GEVLFVFSPLNIPD-- 120 (285)
T ss_dssp HHHHHHHHTTTCCCSSCHHHHHHHHHHHHTTCS--------SCEEEEEEEC-TT---T------CCEEEEEEECCCCC--
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhC--------CCeEEEEEEE-cC---C------CEEEEEEEeCCCcc--
Confidence 599999999999877 89999999999998663 3578997762 11 1 15778888877543
Q ss_pred CccceEEEeecceeecCCC-CCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcCC
Q 027646 80 GIAPINLVVEHELHRATPG-GTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPA 158 (220)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~-~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP~ 158 (220)
...++++.+.+ .++.... .+.++||+ +|+++++++++|++ +||+||+|+ +|+|+||+++|||+++||+|+|||
T Consensus 121 ~~~~~~l~~~~-~~~~~~~~~~~~~Kt~-~~l~~~la~~~A~~--~de~L~ld~--~G~V~Egs~sNif~v~~g~l~TP~ 194 (285)
T 3csw_A 121 LETGVEVKISN-VRRIPDLSTPPALKIT-GRTDIVLARREIVD--CYDVILLGL--NGQVCEGSFSNVFLVKEGKLITPS 194 (285)
T ss_dssp CTTCEEEEECS-SCCCCTTTSCTTCCBT-TCHHHHHHHTTCSS--SSEEEEECT--TSBEEEESSSEEEEEETTEEEEEC
T ss_pred ccCCeEEEEEe-EEecCCCCCCCccchh-ccHHHHHHHHHHHh--CCeEEEECC--CCcEEEcCceEEEEEECCEEEeCC
Confidence 12345565543 3443332 34799997 59999999888766 999999998 899999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 159 IKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 159 l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
++.++|+||||+.++++|+++|++++|+.++++||.+|||+|+|||++||+||++|+++
T Consensus 195 l~~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~adevfltns~~gv~PV~~id~~ 253 (285)
T 3csw_A 195 LDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAGVVPVRRLNEH 253 (285)
T ss_dssp GGGTCCCCHHHHHHHHHHHHTTCCEEEECCBHHHHHTCSEEEEEETTTEEEEEEEETTE
T ss_pred CCCCccCCHHHHHHHHHHHHCCCeEEEEeCCHHHHhhCCEEEEecCcceEEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999875
No 16
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-41 Score=280.33 Aligned_cols=188 Identities=23% Similarity=0.251 Sum_probs=155.5
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHc-cCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLAN-KRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKE 79 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~ 79 (220)
+||.+||+.|+++.|..+++.+.+.++++.| + .+..|+|++++++++.+++.|.+ .+...++..
T Consensus 43 ~RL~~Sa~~l~~~~p~~~~l~~~i~~~~~~~~~-------~~~~~vR~~v~~g~~~~~~~p~~--------~~~~~~~~~ 107 (246)
T 2zgi_A 43 ARLRRHALALGLSYPGDEAFLEDLEALLRAFPK-------APCLRLRFTVGEGVRLSEARPYA--------PLPLSLYRE 107 (246)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHTTSCTT-------CSEEEEEEEEETTEEEEEEEECC--------CCCTHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCC-------CCCEEEEEEEECCCCccCcCcCC--------CCchhHhhc
Confidence 5999999999999873388999999988776 3 25789998887554334432110 001122334
Q ss_pred CccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEcCCC
Q 027646 80 GIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAI 159 (220)
Q Consensus 80 g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~TP~l 159 (220)
|+ ++.+.+ . |..|+ +.++||+ ||+.+++++++|+++|+||+||+|+ +|+|+|++++|||+++||+|+||
T Consensus 108 g~---~l~~~~-~-r~~~~-~~~~Kt~-n~~~~~~a~~~A~~~g~de~l~ld~--~G~v~Egs~sNif~v~~g~l~TP-- 176 (246)
T 2zgi_A 108 GV---RVRLTG-Y-RVHPD-LARYKTG-NYLPYRLALEEARKEGAFEGLLLDA--FGHVVDGSRTSPLLFREGTLYLL-- 176 (246)
T ss_dssp CB---CEEEEE-E-ECCTT-TTTSCBS-CCHHHHHHHHHHHTTTCSEEEEECT--TSCEEEESSSEEEEEETTEEEEE--
T ss_pred Ce---EEEEec-c-cCCCC-Cccchhh-hhHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEECC--
Confidence 44 444543 3 66776 8899997 8999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEEeeC
Q 027646 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYL 217 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i~~~ 217 (220)
.++|+||||+.++++|+++|++++|+.++++||.+ |+|+|||++||+||++||++
T Consensus 177 -~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~dL~~--evfltns~~gi~pV~~id~~ 231 (246)
T 2zgi_A 177 -EGGLEGITREKVAEAARGLGLRVERGLFRPEGLRG--HLLLAGSGVGLLPVRPPPPE 231 (246)
T ss_dssp -CSSCCCHHHHHHHHHHHHTTCEEEEECCCGGGCCS--EEEEEETTTEEEEBSSCCGG
T ss_pred -CCccCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHh--hHeeecChhheEEEEEEChH
Confidence 68999999999999999999999999999999998 99999999999999999875
No 17
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=100.00 E-value=1.1e-40 Score=270.60 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=156.3
Q ss_pred ChHHhHHhhcCCCCCCHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCcccccCC
Q 027646 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEG 80 (220)
Q Consensus 1 ~RL~~sa~~l~i~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~~~~g 80 (220)
+||.+||+.|+++. +.+++.+.+.++++ ++ .+.+|+|+++.+++ .+.+.+.|+++++.
T Consensus 38 ~RL~~Sa~~l~~~~-~~~~l~~~i~~~~~-~~-------~~~~~iR~~~~~~g-----------~~~i~~~p~~~~~~-- 95 (221)
T 3qqm_A 38 ARLYGSAAELGFAC-DPQRIAEVLSDALD-GA-------RTAMRTRLALARNG-----------DATASAQPYEPLAA-- 95 (221)
T ss_dssp HHHHHHHHHHTCCC-CHHHHHHHHHHHHT-TC-------CSCEEEEEEEETTS-----------CEEEEEEECCCCCT--
T ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cC-------CCCEEEEEEEEcCC-----------CEEEEEEcCCCCCC--
Confidence 59999999999997 68899999999886 43 35789998776432 25677788775442
Q ss_pred ccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEEC-CEEEcCCC
Q 027646 81 IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKG-NVISTPAI 159 (220)
Q Consensus 81 ~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~-~~l~TP~l 159 (220)
.+++++.+.+ .++..++.+.++||+ ||+.+.+++++|+++|+||+||+|+ +|+|+|++++|||++++ |+|+|||+
T Consensus 96 ~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~~~a~~~a~~~g~~e~l~l~~--~g~v~E~s~sNif~~~~~~~l~TP~~ 171 (221)
T 3qqm_A 96 DKVWILRLAR-TRLDSQNTLLRHKTS-RRQLYTHARSEYLVTQADEVLLANE--RGEICEGTITNVFADFGDGVLATPRL 171 (221)
T ss_dssp TCCEEEEECS-CCBCTTCGGGGSCBS-CCHHHHHHHHTSCTTTCSEEEEEBT--TSCEEEESSCEEEEECSSSCEEEECG
T ss_pred CCCEEEEEee-eEecCCCcchhchhc-chHHHHHHHHHHHhcCCcEEEEECC--CCeEEEcCceeEEEEeCCCEEECCCC
Confidence 1345666654 566667778999996 8999999999999999999999998 89999999999999998 99999999
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCcceeEEeEEE
Q 027646 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi~pV~~i 214 (220)
+.++|+||||+.+++.+ +++|+.++++||..|||+|+|||++||+||+-+
T Consensus 172 ~~~~L~GitR~~ll~~~-----~v~e~~i~~~~L~~adevf~~ns~~gi~pV~l~ 221 (221)
T 3qqm_A 172 DCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 221 (221)
T ss_dssp GGTCCCCHHHHHHHHTT-----SEEEECCCHHHHTTCSEEEEEETTTEEEEEEEC
T ss_pred ccCcchHHHHHHHHhhC-----cEEEEeCCHHHHHhCCEEEEEecceeEEEEEEC
Confidence 99999999999999874 799999999999999999999999999999853
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=100.00 E-value=2.1e-35 Score=235.03 Aligned_cols=165 Identities=12% Similarity=0.134 Sum_probs=131.3
Q ss_pred ChHHhHH-hhcCCC--CC-CHHHHHHHHHHHHHHccCcCCCCCCccEEEEEEEEecCCccCCCCCCCeeEEEEEecCccc
Q 027646 1 MRMQVGA-ERMCMP--SP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNY 76 (220)
Q Consensus 1 ~RL~~sa-~~l~i~--~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~~ 76 (220)
+||.+|| +.|+|+ .| +.+++.+.+. ++++++ .+.+|+|+++.++. . .+...|+++
T Consensus 26 ~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~~iR~~~~~g~--~----------~~~~~p~~~- 84 (194)
T 3ceb_A 26 QRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHR-------EGLIRCRIDYNHHD--Y----------VLQCFPYQQ- 84 (194)
T ss_dssp HHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCS-------SSEEEEEEEECSSC--E----------EEEEEEECC-
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCC-------CCCEEEEEEEeCCc--c----------EEEEecCCC-
Confidence 5999999 999999 55 8898998888 777664 36789998775321 1 122233321
Q ss_pred ccCCccceEEEeecceeecCCCCCCCcccccchHHHHHHHHHHHHCCCCeEEEeecCCCceEEEcCceEEEEEECCEEEc
Q 027646 77 FKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVIST 156 (220)
Q Consensus 77 ~~~g~~~~~l~~~~~~~r~~~~~l~~~Kt~~~~~~~~~a~~~a~~~g~de~l~ld~~~~g~v~E~~~sNif~~~~~~l~T 156 (220)
.++.... ....++.++++||+ ||+ ++++.+|+++|+||+||+ + +|+|+|++++||||++||+|+|
T Consensus 85 --~~~~~~~-------~~~~~~~~~~~Kt~-n~~--~~~~~~A~~~g~de~l~l-~--~G~v~E~s~sNif~~~~g~l~T 149 (194)
T 3ceb_A 85 --KVYRTFK-------PVFCDHIDYSLKFS-DRT--LLNNLLKQKEECDEIMII-R--QGKVTDCSIGNLIFRQNNQWIT 149 (194)
T ss_dssp --CCCCCEE-------EEECSSCCCSSCBS-CCH--HHHHHHGGGTTSSEEEEE-E--TTEECCCSSSEEEEEETTEEEE
T ss_pred --CcEEEEE-------EecCCCcchhhccc-CHH--HHHHHHHhhCCCCEEEEE-e--CCEEEEeccEEEEEEECCEEEC
Confidence 1221111 12234567899996 787 568888999999999999 7 8999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceeeeecCccee
Q 027646 157 PAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVV 208 (220)
Q Consensus 157 P~l~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tns~~gi 208 (220)
|| .++|+||||+.+++ +++++|+.++++||.+|||+|+|||++|+
T Consensus 150 P~--~~~L~GitR~~ll~-----~~~v~e~~i~~~eL~~adevfl~ns~~gi 194 (194)
T 3ceb_A 150 PD--KPLLEGTQRAKLLE-----QKKIIAREIFFEDLAQYEEIRLINAMNGL 194 (194)
T ss_dssp ES--SCSSCCHHHHHHHH-----TTSSEEECCBGGGGGGCSCEEEEBTTBCC
T ss_pred CC--CCCcChHHHHHHHc-----CCCEEEecCCHHHHhhccEEEEEecccCC
Confidence 99 69999999999998 47999999999999999999999999986
No 19
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=65.50 E-value=8.7 Score=26.76 Aligned_cols=44 Identities=11% Similarity=0.233 Sum_probs=31.7
Q ss_pred CCCCchHHH-HHHHHHHhCCCeEEE---------EecCHHHHhccceeeeecCc
Q 027646 162 TILPGITRK-SIIDVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 205 (220)
Q Consensus 162 ~~L~GitR~-~ll~~a~~~g~~v~e---------~~i~~~eL~~ade~f~tns~ 205 (220)
|+-...+-. .|-+.|+++|+.+.. -.++.+|+..||-+++.+..
T Consensus 17 GiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 17 GLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 444444433 344568889987654 47999999999999998764
No 20
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=54.61 E-value=14 Score=25.51 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=32.6
Q ss_pred CCCCCchHHHHHH-HHHHhCCCeEEE---------EecCHHHHhccceeeeecCc
Q 027646 161 GTILPGITRKSII-DVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 205 (220)
Q Consensus 161 ~~~L~GitR~~ll-~~a~~~g~~v~e---------~~i~~~eL~~ade~f~tns~ 205 (220)
.|+-...|-...| ..|+++|+.+.. -.++.+|+..||-+++.+..
T Consensus 13 tGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r48_A 13 NGIAHTYMAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADR 67 (106)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 3555555655445 467888986554 35999999999999998764
No 21
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=51.70 E-value=14 Score=25.51 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=32.4
Q ss_pred CCCCCchHHHHHH-HHHHhCCCeEEE---------EecCHHHHhccceeeeecCc
Q 027646 161 GTILPGITRKSII-DVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 205 (220)
Q Consensus 161 ~~~L~GitR~~ll-~~a~~~g~~v~e---------~~i~~~eL~~ade~f~tns~ 205 (220)
.|+-...|-...| ..|+++|+.+.. -.++.+|+..||-+++.+..
T Consensus 13 tGiAhTymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 67 (106)
T 2r4q_A 13 TGIAHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADK 67 (106)
T ss_dssp CC--CHHHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESS
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC
Confidence 4677777766555 467888976553 35999999999999998764
No 22
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=46.65 E-value=15 Score=25.28 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=31.9
Q ss_pred CCCCchH-HHHHHHHHHhCCCeEEE---------EecCHHHHhccceeeeecCc
Q 027646 162 TILPGIT-RKSIIDVAQSQGFQVEE---------RLVTVEELLDADEVFCTGTA 205 (220)
Q Consensus 162 ~~L~Git-R~~ll~~a~~~g~~v~e---------~~i~~~eL~~ade~f~tns~ 205 (220)
|+=...+ -+.|-+.|+++|+.+.. -.++.+|+..||-+++....
T Consensus 14 GiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~ 67 (106)
T 2m1z_A 14 GVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDT 67 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESS
T ss_pred cHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccc
Confidence 5555555 45556678889986552 35788999999999998764
No 23
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=44.45 E-value=28 Score=21.18 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCCCeEEEeecCCCceEEEc--------CceEEEEEECCEEEcCCCCCCCCCchH
Q 027646 122 KGYSDVLYLDCVHKRYLEEV--------SSCNIFVVKGNVISTPAIKGTILPGIT 168 (220)
Q Consensus 122 ~g~de~l~ld~~~~g~v~E~--------~~sNif~~~~~~l~TP~l~~~~L~Git 168 (220)
.|.+|+-|+-+ ||.|... ..+|-|.+.|.-=.- ++ ..+||||.
T Consensus 5 ~gIeEVnmfk~--dg~vihF~nPkVqaS~~aNTfvv~G~~e~K-~l-~e~lP~Il 55 (58)
T 3mcb_B 5 SGIEEVNMFTN--QGTVIHFNNPKVQASLAANTFTITGHAETK-QL-TEMLPSIL 55 (58)
T ss_dssp CCCCEEEEEET--TSEEEEEESCEEEEETTTTEEEEESCEEEE-EG-GGGTTGGG
T ss_pred CCeeEEEEEec--CCEEEEecCcceEEeeccceEEEecCCeee-EH-HHHChhhh
Confidence 36778777765 7776654 558999998753222 34 35788875
No 24
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=43.43 E-value=30 Score=21.63 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=27.6
Q ss_pred CCCeEEEeecCCCceEEEc--------CceEEEEEECCEEEcCCCCCCCCCchHHH
Q 027646 123 GYSDVLYLDCVHKRYLEEV--------SSCNIFVVKGNVISTPAIKGTILPGITRK 170 (220)
Q Consensus 123 g~de~l~ld~~~~g~v~E~--------~~sNif~~~~~~l~TP~l~~~~L~GitR~ 170 (220)
|.+|+-|+-+ ||.|... ..+|-|++.|.-=.- ++ ..+||||.-|
T Consensus 6 gIeEVnmfk~--dg~vihF~nPkVqaS~~aNT~vv~G~~e~K-~l-~ellP~Il~q 57 (66)
T 3lkx_A 6 GIEEVNMFTN--QGTVIHFNNPKVQASLAANTFTITGHAETK-QL-TEMLPSILNQ 57 (66)
T ss_dssp CEEEEEEEET--TSEEEEEESCEEEEECC-CEEEEESCEEEE-EG-GGGTTGGGGG
T ss_pred CeeEEEEEec--CCEEEEecCcceEEeeccCeeEecCCCEEe-EH-HHHChhhhhc
Confidence 5667766665 6766654 568999998753332 34 3678888643
No 25
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=34.86 E-value=47 Score=23.84 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHHhCCCeEEEEec---CHHHHhccceeeeecCcc--eeEE
Q 027646 165 PGITRKSIIDVAQSQGFQVEERLV---TVEELLDADEVFCTGTAV--VVSP 210 (220)
Q Consensus 165 ~GitR~~ll~~a~~~g~~v~e~~i---~~~eL~~ade~f~tns~~--gi~p 210 (220)
-|.|++..-.+++.+|. ++..++ ..++|..+|-+++..++. |..|
T Consensus 12 tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~~~d~ii~g~pt~~~g~~p 61 (164)
T 2bmv_A 12 SGNAEAIAEKISKAIGN-AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQ 61 (164)
T ss_dssp SSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHTTCSEEEEEEEEETTTEEC
T ss_pred CchHHHHHHHHHHHcCC-cEEEecccCCHhHHhhCCEEEEEECCcCCCcCc
Confidence 49999999888888886 555554 467888899888877664 4555
No 26
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=33.67 E-value=79 Score=21.42 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHH---hCCCeEEEEecC---HHHHhccceeeeecCcc
Q 027646 165 PGITRKSIIDVAQ---SQGFQVEERLVT---VEELLDADEVFCTGTAV 206 (220)
Q Consensus 165 ~GitR~~ll~~a~---~~g~~v~e~~i~---~~eL~~ade~f~tns~~ 206 (220)
-|-|++..-.+++ +.|.+++.-.+. ++++.++|-+++.+.+.
T Consensus 10 tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y 57 (137)
T 2fz5_A 10 TGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAM 57 (137)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCB
T ss_pred CChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEcccc
Confidence 4888877655544 457777665554 67899999999987764
No 27
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=31.22 E-value=4 Score=20.31 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=13.3
Q ss_pred CCCCCCchHHHHHHHHH
Q 027646 160 KGTILPGITRKSIIDVA 176 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a 176 (220)
...+|.|.|||-++.++
T Consensus 8 ~~CClsGCt~QDLL~lC 24 (26)
T 2h8b_A 8 RYCCLSGCTQQDLLTLC 24 (26)
T ss_dssp HHHHHTCBCHHHHHTTC
T ss_pred HHHHhcCCcHHHHHhhC
Confidence 45689999999988654
No 28
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=24.98 E-value=45 Score=21.74 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=23.7
Q ss_pred CchHHHHHHHHHHhCCCeEEEEecCHHHHh
Q 027646 165 PGITRKSIIDVAQSQGFQVEERLVTVEELL 194 (220)
Q Consensus 165 ~GitR~~ll~~a~~~g~~v~e~~i~~~eL~ 194 (220)
.|-.-..+++.|+++|+++.|-+--...|.
T Consensus 25 ~~~~A~~I~~~A~e~~VPi~e~~~LAr~L~ 54 (83)
T 3bzy_B 25 KDAKALQIIKLAELYDIPVIEDIPLARSLD 54 (83)
T ss_dssp ETHHHHHHHHHHHHTTCCEEECHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 366778899999999999998775555555
No 29
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=24.39 E-value=92 Score=22.52 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=29.4
Q ss_pred CCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHh
Q 027646 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELL 194 (220)
Q Consensus 161 ~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~ 194 (220)
.|-..|+.-+.+-+++++.|++++-...+..++.
T Consensus 21 ~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~ 54 (227)
T 3tql_A 21 SGQVEGFGADIVKAVCKQMQAVCTISNQPWDSLI 54 (227)
T ss_dssp -CCEESHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred CCCcccchHHHHHHHHHHhCCeEEEEeCCHHHHH
Confidence 5678899999999999999999999998887764
No 30
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=24.39 E-value=23 Score=21.89 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=27.5
Q ss_pred CCCCchHHHHHHHHHHhCCCeEEEEecCHHHHhccceee
Q 027646 162 TILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVF 200 (220)
Q Consensus 162 ~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~ade~f 200 (220)
+.+.|-.|+.+-+.|++.|+. .||++.+..|.+-|
T Consensus 18 ~FVR~kvrr~tE~~Are~G~~----~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 18 FFARSQAKARIEQLARQAEQD----IVTPELVEQARLEF 52 (62)
T ss_dssp GGGHHHHHHHHHHHHHHTTCS----EECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCC----eEcHHHHHHHHHHH
Confidence 346677778888899999974 68999999887755
No 31
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=24.24 E-value=25 Score=20.58 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=17.8
Q ss_pred CCCCchHHHHHHHHHHhCCCeE
Q 027646 162 TILPGITRKSIIDVAQSQGFQV 183 (220)
Q Consensus 162 ~~L~GitR~~ll~~a~~~g~~v 183 (220)
.+|+|.+|+.|+..++.-++.|
T Consensus 18 ~VLqgksR~vIirELqrTnLdV 39 (53)
T 2qho_B 18 VVLQGKSRSVIIRELQRTNLDV 39 (53)
T ss_dssp HHSTTCCHHHHHHHHHHTTTCH
T ss_pred HHhcCCcHHHHHHHHHHhCccH
Confidence 4799999999998887766543
No 32
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.76 E-value=1.2e+02 Score=20.65 Aligned_cols=43 Identities=28% Similarity=0.291 Sum_probs=29.8
Q ss_pred CchHHHHHHHHH---HhCCCeEEEEec---CHHHHhccceeeeecCcce
Q 027646 165 PGITRKSIIDVA---QSQGFQVEERLV---TVEELLDADEVFCTGTAVV 207 (220)
Q Consensus 165 ~GitR~~ll~~a---~~~g~~v~e~~i---~~~eL~~ade~f~tns~~g 207 (220)
-|-|++..-.++ ++.|+.++...+ ..++|..+|-+++.+++.+
T Consensus 9 tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~ 57 (138)
T 5nul_A 9 TGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMT 57 (138)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBT
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccC
Confidence 477877665554 445777666555 4578999999888877654
No 33
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=20.47 E-value=95 Score=23.32 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCCCCCchHHHHHHHHHHhC-CCeEEEEecCHHHHh
Q 027646 160 KGTILPGITRKSIIDVAQSQ-GFQVEERLVTVEELL 194 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a~~~-g~~v~e~~i~~~eL~ 194 (220)
+.|-+.|+.-+.+-++|+++ |++++-...+.+.+.
T Consensus 27 ~~G~~~G~~vdl~~~ia~~l~g~~~~~~~~~~~~~~ 62 (243)
T 4gvo_A 27 ENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLL 62 (243)
T ss_dssp TTSCEESHHHHHHHHHHHTCTTEEEEEEECCGGGHH
T ss_pred CCCcEEEhHHHHHHHHHHhccCCeEEEEECCHHHHH
Confidence 35778999999998999996 999998888876653
No 34
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=20.28 E-value=1.3e+02 Score=22.47 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCeEEEEecCHHHHhccceeeeec
Q 027646 171 SIIDVAQSQGFQVEERLVTVEELLDADEVFCTG 203 (220)
Q Consensus 171 ~ll~~a~~~g~~v~e~~i~~~eL~~ade~f~tn 203 (220)
.+...++++|..++... ++++|..+|.+++.+
T Consensus 17 si~~al~~~G~~~~v~~-~~~~l~~~D~lilPG 48 (211)
T 4gud_A 17 SVKFAIERLGYAVTISR-DPQVVLAADKLFLPG 48 (211)
T ss_dssp HHHHHHHHTTCCEEEEC-CHHHHHHCSEEEECC
T ss_pred HHHHHHHHCCCEEEEEC-CHHHHhCCCEEEECC
Confidence 45556678898877543 689999999999976
No 35
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=20.26 E-value=84 Score=22.94 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEecCHHHHh
Q 027646 160 KGTILPGITRKSIIDVAQSQGFQVEERLVTVEELL 194 (220)
Q Consensus 160 ~~~~L~GitR~~ll~~a~~~g~~v~e~~i~~~eL~ 194 (220)
..|-..|+.-+.+-.+++++|++++-...+.+++.
T Consensus 29 ~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~ 63 (234)
T 3h7m_A 29 QNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMF 63 (234)
T ss_dssp TTSCEESHHHHHHHHHHHHHTCCEEEEEECGGGHH
T ss_pred CCCCEeeeEHHHHHHHHHHcCCceEEEeCCHHHHH
Confidence 45778999999999999999999988888776654
Done!