RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027646
(220 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 482 bits (1242), Expect = e-173
Identities = 199/220 (90%), Positives = 212/220 (96%)
Query: 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
+RM+ GAERMCMP+P+VEQFVEAVK TVLANKRW+PP GKGSLYIRPLLMGSGAVLGLAP
Sbjct: 146 IRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAP 205
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
APEYTFLIYVSPVGNYFKEG+APINL+VE+E HRATPGGTGGVKTIGNYAAVLKAQS AK
Sbjct: 206 APEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAK 265
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
AKGYSDVLYLDCVHK+YLEEVSSCNIF+VK NVISTPAIKGTILPGITRKSIIDVA+SQG
Sbjct: 266 AKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTILPGITRKSIIDVARSQG 325
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKR 220
FQVEER VTV+ELL+ADEVFCTGTAVVVSPVGSITY GKR
Sbjct: 326 FQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKR 365
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 332 bits (852), Expect = e-115
Identities = 158/220 (71%), Positives = 187/220 (85%)
Query: 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
+RM++GAERM MPSPSV+QFV AVK T LANKRW+PP+GKG+LYIRPLLMGSG +LGL P
Sbjct: 132 IRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGP 191
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
APEYTF++Y SPVGNYFKEG+A +NL VE E RA PGG GGVK+I NYA VLKA S AK
Sbjct: 192 APEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAK 251
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
++G+SDVLYLD V K+YLEE SSCN+FVVKG ISTPA GTIL GITRKS++++A QG
Sbjct: 252 SRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQG 311
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKR 220
+QV E+ V V+E++DADEVFCTGTAVVV+PVG+ITY KR
Sbjct: 312 YQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEKR 351
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 316 bits (811), Expect = e-109
Identities = 139/220 (63%), Positives = 180/220 (81%), Gaps = 1/220 (0%)
Query: 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
+RMQ GA+R+CM PS+EQFVEAVK TVLANK+W+PP GKG+LYIRPLL+GSGAVLG+AP
Sbjct: 96 LRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAP 155
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
APEYTFLIY SPVGNY K + +NL V+H+ RA GGTGGVK+ NY+ V+K+ AK
Sbjct: 156 APEYTFLIYASPVGNYHKAS-SGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAK 214
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
+ G+SDVL+LD + +EE+S+CNIF++KGN++STP GTILPG+TRKSI ++A+ G
Sbjct: 215 SSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTSGTILPGVTRKSISELARDIG 274
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKR 220
+QVEER V+V+ELL+A+EVFCTGTAVVV V ++T+ K+
Sbjct: 275 YQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKK 314
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 314 bits (808), Expect = e-108
Identities = 104/226 (46%), Positives = 138/226 (61%), Gaps = 7/226 (3%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG-SLYIRPLLMGSGAVLGLAP 60
R+Q A+R+ MP E F+EAVK V A++ W+PP G+G SLY+RP ++ + LG+ P
Sbjct: 93 RLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKP 152
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
A EY F + SPVG YFK G+ P+++ V E RA PGGTG K GNYAA L AQ+ AK
Sbjct: 153 AEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAK 212
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
KG VLYLD V Y+EEV N F + + TP + G+ILPGITR S++ +A+ G
Sbjct: 213 EKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGITRDSLLQLAEDLG 272
Query: 181 FQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGKR 220
VEER V+++E E F GTA V++P+G I Y K
Sbjct: 273 LTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKDKE 318
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 294 bits (754), Expect = e-101
Identities = 107/219 (48%), Positives = 140/219 (63%), Gaps = 2/219 (0%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R+ A R+ +P SVE+F++A+K V + W+P G SLYIRP + G+ LG++PA
Sbjct: 40 RLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPA 99
Query: 62 PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKA 121
EY F ++ SPVG YFK G ++ +V RA PGG G K GNYAA L AQ A
Sbjct: 100 LEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAE 158
Query: 122 KGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGF 181
KGY L+LD H Y+ EV + NIF VK + TP + G+ILPGITR SI+++A+ G
Sbjct: 159 KGYDQALWLDGAHG-YVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGI 217
Query: 182 QVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKR 220
+VEER +T +EL +ADEVF TGTA VV+PVG I Y GK
Sbjct: 218 KVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKE 256
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 284 bits (728), Expect = 5e-96
Identities = 144/220 (65%), Positives = 172/220 (78%)
Query: 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
MRM++GAERMCM SPSV QF+E VK TVLAN+RW+PP GKGSLY+RPLL GSGA LG+A
Sbjct: 128 MRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAA 187
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
APEYTFL++ SPV NYFKEG A +NL VE + RA GGTGGVK I NY VL+ AK
Sbjct: 188 APEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAK 247
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
++G+SDVLYLD + +EEVS+ NIF+VKGN+I TPA GTIL GITRKSII++A G
Sbjct: 248 SRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDLG 307
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGKR 220
++VEER V VEEL +A+EVFCTGTA V+ VGSIT+ R
Sbjct: 308 YKVEERRVPVEELKEAEEVFCTGTAAGVASVGSITFKNTR 347
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 240 bits (614), Expect = 1e-79
Identities = 107/224 (47%), Positives = 146/224 (65%), Gaps = 6/224 (2%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKG-SLYIRPLLMGSGAVLGLAP 60
R++ A R+ MP E F+EA++ V ANK W+PP G G SLY+RP ++G+ LG+ P
Sbjct: 52 RLRRSARRLLMPELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRP 111
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
APEY F ++ SPVG YFK G+AP+++ V E RA PGGTG VK GNYAA L AQ+ A
Sbjct: 112 APEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAA 171
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-ISTPAIKGTILPGITRKSIIDVAQSQ 179
+G V+YLD V Y+EEV + N F + G+ + TP + G+ILPGITR S++ +A+
Sbjct: 172 EQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDL 231
Query: 180 GFQVEERLVTVEELLDADE----VFCTGTAVVVSPVGSITYLGK 219
G +VEER + ++EL E VF GTA V++PVG I + GK
Sbjct: 232 GMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGK 275
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 223 bits (570), Expect = 1e-73
Identities = 93/221 (42%), Positives = 125/221 (56%), Gaps = 13/221 (5%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
R+ A+R+ +P P E+ EA+K V AN SLYIRPLL LG+AP
Sbjct: 30 RLNRSAKRLGLPIPYDREELREALKELVAANN-------GASLYIRPLLTRGVGGLGVAP 82
Query: 61 AP--EYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSA 118
P E TF+++ SPVG Y K G + L+ + RA PGGTG KT G + A+
Sbjct: 83 PPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAAPGGTGDAKT-GGNLNSVLAKQE 141
Query: 119 AKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQS 178
A G + L LD Y+ E S+ N+F+VK + TP + G ILPGITR S+I++A+
Sbjct: 142 AAEAGADEALLLDD--NGYVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKE 199
Query: 179 QGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSITYLGK 219
G +VEER ++++EL ADEVF TGTA V+PV I G
Sbjct: 200 LGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGI 240
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 190 bits (485), Expect = 2e-60
Identities = 89/216 (41%), Positives = 124/216 (57%), Gaps = 11/216 (5%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R++ A+R+ +P P E+ +E + +LA +P LYIRPL+ G G LG+ A
Sbjct: 51 RLKRSAKRLGLPRPESEEEIELLIQLLLAKNNLVPG-----LYIRPLVRGGGGGLGVRDA 105
Query: 62 PEYTFLIYVSPVGNYFKEGIA--PINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAA 119
E T ++ SPVG Y K G + LV+ R P G G K GNY + + A+ A
Sbjct: 106 TEPTLIVAASPVGAYLKGGRLEKGVVLVISSP-VRRAPPGPGAAKKTGNYLSSVLAKREA 164
Query: 120 KAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-VISTPAIKGTILPGITRKSIIDVAQS 178
KA G + L LD Y+ E + N+F VKG+ V+ TP + G ILPGITR S++++A+
Sbjct: 165 KAAGADEALLLD--EDGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKE 222
Query: 179 QGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
G VEER +T+E+L ADEVF T TA V+PVG I
Sbjct: 223 LGLTVEERPITLEDLKQADEVFLTNTAAGVTPVGLI 258
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 139 bits (352), Expect = 4e-41
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 11/214 (5%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R++ A+ + S+E + ++ + AN GS +R L+ GL+P
Sbjct: 9 RLRRSAKALIGLPLSIEDLRKIIQELLEANGP------AGSGRLRILVSRGDGGRGLSPP 62
Query: 62 PEYTFLIYVSPVGNYFK-EGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
+I + + P G KT VL A AA+
Sbjct: 63 EGAIPIIVSLIALASSAPPRLLITVKLRLSS--YPVPRPLAGHKTTNYLDNVLAALRAAE 120
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
G+ D L LD + E S+ NIF+VKG + TP ++ ILPGITR++++D+A+ G
Sbjct: 121 RAGFDDALLLDE--DGNVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQALLDLAKELG 178
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+VEER +T+ +L +ADE F T + V+PV SI
Sbjct: 179 IEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI 212
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 123 bits (311), Expect = 4e-34
Identities = 75/221 (33%), Positives = 110/221 (49%), Gaps = 31/221 (14%)
Query: 7 AERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLL-MGSGAVLGLAPAPEY 64
A+ + M P SV++ +EA + V N S YIRPL+ +G LG+ P
Sbjct: 65 AKILRMEIPYSVDELMEAQREVVRKNNL-------KSAYIRPLVFVGDEG-LGVRP-HGL 115
Query: 65 T--FLIYVSPVGNY-----FKEGIAPINLVV----EHELHRATPGGTGGVKTIGNYAAVL 113
I P G Y ++GI + V H + P K GNY +
Sbjct: 116 PTDVAIAAWPWGAYLGEEALEKGI---RVKVSSWTRHA-PNSIPTR---AKASGNYLNSI 168
Query: 114 KAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSII 173
A++ A+ GY + L LD + Y+ E S NIF+V+ V+ TP + +IL GITR ++I
Sbjct: 169 LAKTEARRNGYDEALLLD--VEGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVI 226
Query: 174 DVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+A+ G +V ER +T +EL ADEVF TGTA V+P+ +
Sbjct: 227 TLAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREV 267
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 115 bits (290), Expect = 3e-31
Identities = 76/217 (35%), Positives = 105/217 (48%), Gaps = 22/217 (10%)
Query: 7 AERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYT 65
A+ M P S E+ +EA + T+ N S YIRPL+ LGL P Y
Sbjct: 56 AKIYRMEIPYSKEELMEATRETLRKN-------NLRSAYIRPLVFRGDGDLGLNPRAGYK 108
Query: 66 --FLIYVSPVGNYFKE-----GIAPINLVVEHELHRATPGGT-GGVKTIGNYAAVLKAQS 117
+I P G Y E GI R P K GNY L A+S
Sbjct: 109 PDVIIAAWPWGAYLGEEALEKGIDAKVSSW----RRNAPNTIPTAAKAGGNYLNSLLAKS 164
Query: 118 AAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQ 177
A+ GY + + LD + Y+ E S NIF+VK V+ TP + +ILPGITR ++I +A+
Sbjct: 165 EARRHGYDEAILLD--VEGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAK 222
Query: 178 SQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
G +V E+ ++ EEL ADE F TGTA ++P+ +
Sbjct: 223 ELGIEVVEQPISREELYTADEAFFTGTAAEITPIREV 259
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 102 bits (256), Expect = 2e-26
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 22/219 (10%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
R+ A+ + + P + E+ E ++ V N+ G+G +YI+ + G G P
Sbjct: 47 RLYRSAKELRIDIPYTREELKELIRELVAKNE-----GGEGDVYIQ-VTRGVGPRGHDFP 100
Query: 61 APEYTFLIYVS-----PVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKA 115
++ ++ P ++G+ I + L +K++ VL
Sbjct: 101 KCVKPTVVIITQPLPLPPAELLEKGVRVITVPDIRWLRCD-------IKSLNLLNNVLAK 153
Query: 116 QSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDV 175
Q AK G + + LD + E SS N+F+VK V+ TP + ILPGITR ++I++
Sbjct: 154 Q-EAKEAGADEAILLD--ADGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIEL 210
Query: 176 AQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
A+ G VEER ++EEL ADEVF T T V PV I
Sbjct: 211 AKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVVEI 249
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 93.9 bits (234), Expect = 4e-23
Identities = 45/97 (46%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 118 AAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQ 177
AA+AKGY+D L LD ++ Y+ E + NIF VK VI TP L GITR+++I++A+
Sbjct: 171 AAEAKGYADALMLD--YRGYVAEATGANIFFVKDGVIHTP-TPDCFLDGITRQTVIELAK 227
Query: 178 SQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+G +V ER + EEL E F TGTA V+PV I
Sbjct: 228 RRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVSEI 264
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 88.1 bits (219), Expect = 3e-21
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 15/215 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R++ A R+ +P P + + A+++ + AN G IR +L G AP+
Sbjct: 30 RLERSARRLGIPEPDLPRLRAALESLLAAND---IDEG----RIRLILSRGPGGRGYAPS 82
Query: 62 --PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAA 119
P + V P ++ + G+K + NY + A+ A
Sbjct: 83 VCPGPALYVSVIP---LPPAWRQDGVRLITCPVRLGEQPLLAGLKHL-NYLENVLAKREA 138
Query: 120 KAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQ 179
+ +G + L+LD + E ++ N+F VK + TP++ L GITR+ +I++A ++
Sbjct: 139 RDRGADEALFLDT--DGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAK 196
Query: 180 GFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
G+ V+ER + +E+LL ADE F T + + V+PV +I
Sbjct: 197 GYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAI 231
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 88.0 bits (219), Expect = 5e-21
Identities = 64/204 (31%), Positives = 92/204 (45%), Gaps = 23/204 (11%)
Query: 16 SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP--APEYTFLIYVSPV 73
S E+ E V T+ N YIR ++ LGL P P+ T + P+
Sbjct: 67 SKEEMTEIVLETLRKN-------NLRDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPI 119
Query: 74 GNYFKE----GIAPINLVVEHELHRATPGGT--GGVKTIGNYAAVLKAQSAAKAKGYSDV 127
G Y E G+ I + R VK++ NY + A+ A G +
Sbjct: 120 GLYPGELYEKGLKVITVST-----RRNRPDALSPQVKSL-NYLNNILAKIEANLAGVDEA 173
Query: 128 LYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERL 187
+ L+ + Y+ E + NIF+VK + TP L GITR ++I++A+ G V E L
Sbjct: 174 IMLN--DEGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVREEL 231
Query: 188 VTVEELLDADEVFCTGTAVVVSPV 211
T+ +L ADEVF TGTA V PV
Sbjct: 232 FTLHDLYTADEVFLTGTAAEVIPV 255
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 86.2 bits (214), Expect = 3e-20
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 24/213 (11%)
Query: 7 AERMCM-PSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMG-SGAVLGLAPAPEY 64
AE + + P+ S E+ + + KR+ +LYIRP+ G G+AP PE
Sbjct: 61 AEALGLKPTVSAEEIEALAREGL---KRF---DPDTALYIRPMYWAEDGFASGVAPDPES 114
Query: 65 T---FLIYVSPVGNY--FKEGIAPINLVVEHELHRATPG-GTGGVKTIGNYAAVLKAQSA 118
T + +P+ F ++P R T K Y +A
Sbjct: 115 TRFALCLEEAPMPEPTGFSLTLSP--------FRRPTLEMAPTDAKAGCLYPNNARALRE 166
Query: 119 AKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQS 178
A+++G+ + L LD + + E ++ N+F+VK V+ TP GT L GITR+ +I + +
Sbjct: 167 ARSRGFDNALVLDMLGN--VAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLRE 224
Query: 179 QGFQVEERLVTVEELLDADEVFCTGTAVVVSPV 211
G V E +T E+ L+ADEVF TG V PV
Sbjct: 225 DGVTVVETTLTYEDFLEADEVFSTGNYSKVVPV 257
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 81.1 bits (201), Expect = 2e-18
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 103 VKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK--GNVISTPAIK 160
+K++G VL A+ AAK G + +D ++ E +S N ++V G +++ PA
Sbjct: 148 IKSVGLLPNVL-AKQAAKEAGAQEAWMVD---DGFVTEGASSNAWIVTKDGKLVTRPADN 203
Query: 161 GTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
ILPGITR ++ID+A+ G +VEER T++E A E F T + V PV I
Sbjct: 204 F-ILPGITRHTLIDLAKELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQI 256
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 77.7 bits (192), Expect = 3e-17
Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 25/222 (11%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSL---YIRPLLMGSGAVLGL 58
R+ A + +P P ++++ AV+ + + W P + +L Y R G
Sbjct: 61 RLARSAALLDLPEPDLDRWRRAVELAI---EEWRAPEDEAALRLVYSR----------GR 107
Query: 59 APAPEYTFLIYVSPVGNYFK----EGIAPINLV--VEHELHRATPGGTGGVKTIGNYAAV 112
T + VSPV EG++ I L + P G KT+ +YA
Sbjct: 108 ESGGAPTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPWLLAGAKTL-SYAVN 166
Query: 113 LKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSI 172
+ A A +G DV++ LE +S + + + + TP ILPG T+ ++
Sbjct: 167 MAALRYAARRGADDVIFTS-TDGYVLEGPTS-TVVIATDDRLLTPPPWYGILPGTTQAAL 224
Query: 173 IDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+VA+ +G+ E R + +L AD V+ + + + V ++
Sbjct: 225 FEVAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVHTL 266
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 76.7 bits (189), Expect = 7e-17
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 103 VKTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGT 162
+K++ VL Q A + Y +L+ + E SS N++ +K V+ T
Sbjct: 143 IKSLNLLGNVLAKQEAHEKGAYEAILHRGGT----VTEGSSSNVYGIKDGVLYTHPANNL 198
Query: 163 ILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
IL GITR I+ A+ G V+E T EELL+ADEVF + T ++PV I
Sbjct: 199 ILNGITRMVILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEI 250
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 72.7 bits (179), Expect = 2e-15
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 145 NIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGT 204
N+F VKG+++ TP+++ IL GITR +I V + G +V+E T EELL ADEVF T +
Sbjct: 182 NLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSADEVFVTNS 241
Query: 205 A---VVVSPVGSITYLGKR 220
V ++ + + GK
Sbjct: 242 IQEIVPLTRIEERDFPGKV 260
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 66.8 bits (164), Expect = 2e-13
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 123 GYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ 182
+ L LD + E ++ NIF KGN + TP + + G+ R+ ++ + + G++
Sbjct: 156 EADEALVLDTDGN--VVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALGYE 213
Query: 183 VEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+EE +EELL ADEVF T + + V PV +I
Sbjct: 214 IEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 63.7 bits (156), Expect = 3e-12
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 123 GYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ 182
+ L LD +E ++ N+F KG V+ TP + + G+ R+ I+++ G+
Sbjct: 158 EADEALVLD-SEGWVIECCAA-NLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYP 215
Query: 183 VEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
V E ++EELL ADEVF + + V PV +I
Sbjct: 216 VVEVDASLEELLQADEVFICNSLMPVWPVRAI 247
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 63.0 bits (153), Expect = 7e-12
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 24/219 (10%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANK------RWIPPSGKGSLYIRPLLMGSGA 54
R+ A+ + + P +V++ EAV T+ N+ R I GKG L + P +
Sbjct: 53 RLYESAKSILLTIPLTVDEMEEAVLQTLQKNEYADAYIRLIVSRGKGDLGLDPRSCVKPS 112
Query: 55 VLGLAPAPEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTG-GVKTIGNYAAVL 113
V+ +A + + P ++ G++ VV R TP +K++ VL
Sbjct: 113 VIIIAEQ------LKLFP-QEFYDNGLS----VVSVASRRNTPDALDPRIKSMNYLNNVL 161
Query: 114 KAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVK-GNVISTPAIKGTILPGITRKSI 172
AA+A G + L L+ + Y+ E S N+FVVK G V++ P+ G L GITR S+
Sbjct: 162 VKIEAAQA-GVLEALMLN--QQGYVCEGSGDNVFVVKDGKVLTPPSYLGA-LEGITRNSV 217
Query: 173 IDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPV 211
I++ + EER T ++ ADEVF TGTA + PV
Sbjct: 218 IELCERLSIPCEERPFTRHDVYVADEVFLTGTAAELIPV 256
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 50.0 bits (119), Expect = 2e-07
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 115 AQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIID 174
A + A+ KG + L+ V + E S N F++K + T IL GI R+ ++
Sbjct: 161 AATKAERKGCKEALF---VRNGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLS 217
Query: 175 VAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPV 211
+A++ V+E L +V ++ ADE F TGT + + P+
Sbjct: 218 LAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPM 254
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 36.5 bits (85), Expect = 0.007
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 147 FVVKGNVISTPAIKGTILPGITRKSIIDVAQ---SQGF--QVEERLVTVEELLDADEVFC 201
F+ + P IL G T + ++++A S G V++R ++VEE ADE+
Sbjct: 226 FLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMML 284
Query: 202 TGTAVVVSPV 211
G+ V V P+
Sbjct: 285 IGSGVPVLPI 294
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 33.0 bits (76), Expect = 0.070
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 140 EVSSCNIFV-VKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDADE 198
E + N+F+ G +++TP + +LPG+ R ++D G + E ++TV++L A
Sbjct: 139 EGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLD----AG-RAREAVLTVDDLKSARA 193
Query: 199 VFC 201
++
Sbjct: 194 IWV 196
>gnl|CDD|205395 pfam13214, DUF4022, Protein of unknown function (DUF4022). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 73 and 85 amino
acids in length.
Length = 83
Score = 26.8 bits (59), Expect = 3.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 34 WIPPSG-KGSLYIRPLLMGSGAVLGLAPAPEYTFL 67
W +G K S + LL+G+ ++LGL AP Y F+
Sbjct: 44 WKKSNGIKYSCLLLSLLLGTASILGLLAAPAYFFI 78
>gnl|CDD|179012 PRK00414, gmhA, phosphoheptose isomerase; Reviewed.
Length = 192
Score = 27.0 bits (60), Expect = 6.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 102 GVKTIGNYAAVLKAQSAAKAKG 123
G+ T GN ++KA AA+AKG
Sbjct: 117 GISTSGNSGNIIKAIEAARAKG 138
>gnl|CDD|183086 PRK11320, prpB, 2-methylisocitrate lyase; Provisional.
Length = 292
Score = 27.2 bits (61), Expect = 6.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 19 QFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
+F +AVK +LAN I G L+ L +G + L P
Sbjct: 196 RFADAVKVPILAN---ITEFGATPLFTTEELASAGVAMVLYP 234
>gnl|CDD|147018 pfam04656, Pox_E6, Pox virus E6 protein. Family of pox virus E6
proteins.
Length = 566
Score = 27.3 bits (61), Expect = 7.4
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 134 HKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQ--VEERLVTVE 191
H + +E+V++ F N P+I TIL II FQ + E L VE
Sbjct: 487 HLKCVEDVTTFVRFATCKNSSILPSIIRTILANFNVSIII------LFQKFLRENLYYVE 540
Query: 192 ELLD 195
E LD
Sbjct: 541 EFLD 544
>gnl|CDD|183158 PRK11480, tauA, taurine transporter substrate binding subunit;
Provisional.
Length = 320
Score = 27.3 bits (60), Expect = 7.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 148 VVKGNVISTPAIKGTILPGITRKSIIDVAQ 177
+VKGN TP + L G K+IID AQ
Sbjct: 266 LVKGNTYLTPQQQTAELTGPVNKAIIDTAQ 295
>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit
APPBP1. APPBP1 is part of the heterodimeric activating
enzyme (E1), specific for the Rub family of
ubiquitin-like proteins (Ubls). E1 enzymes are part of a
conjugation cascade to attach Ub or Ubls, covalently to
substrate proteins consisting of activating (E1),
conjugating (E2), and/or ligating (E3) enzymes. E1
activates ubiquitin(-like) by C-terminal adenylation,
and subsequently forms a highly reactive thioester bond
between its catalytic cysteine and Ubls C-terminus. E1
also associates with E2 and promotes ubiquitin transfer
to the E2's catalytic cysteine. Post-translational
modification by Rub family of ubiquitin-like proteins
(Ublps) activates SCF ubiquitin ligases and is involved
in cell cycle control, signaling and embryogenesis.
ABPP1 contains part of the adenylation domain.
Length = 425
Score = 27.3 bits (61), Expect = 8.1
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 138 LEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGFQVEERLVTVEELLDAD 197
LE C ++ T +K +LPGI +I+D G +V+E + LDA
Sbjct: 18 LESAHVC---LLNATATGTEILKNLVLPGIGSFTIVD-----GSKVDEEDLGNNFFLDAS 69
Query: 198 EV 199
+
Sbjct: 70 SL 71
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 26.9 bits (60), Expect = 8.8
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 69 YVSP-VGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDV 127
VS + F+ ++V+ +G +IG Y L A+ A A+ ++
Sbjct: 110 LVSSELHERFRVRETVRDVVL-----------SGFFASIGIYQEDLTAEDLAAAQWLLEL 158
Query: 128 LYLDCVHKRYLEEVS 142
L + R +S
Sbjct: 159 LGAKHLADRPFGSLS 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.394
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,369,998
Number of extensions: 1089776
Number of successful extensions: 990
Number of sequences better than 10.0: 1
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 41
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)