RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027646
(220 letters)
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 340 bits (875), Expect = e-118
Identities = 91/230 (39%), Positives = 140/230 (60%), Gaps = 11/230 (4%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPS-GKGSLYIRPLLMGSGAVLGLAP 60
R+Q A R+ +P E F+E+++ + +++W+PP+ G+ SLY+RP ++ + LG+ P
Sbjct: 105 RLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRP 164
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
+ EY +L+ SP G YFK GI P+++ + HE RA+PGGTG K GNYAA L AQ+ A
Sbjct: 165 SNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAA 224
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKSIIDVA 176
G V++LD + +RY+EE+ N+F V G+ + TP + G++LPGITR S++ +A
Sbjct: 225 EMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLA 284
Query: 177 QSQGFQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGKR 220
GF VEER + V+E EVF GTA V++PV + +
Sbjct: 285 TDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGE 334
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 323 bits (829), Expect = e-111
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 14/232 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R+C+PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 99 RMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP 158
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
+ + PVG YF G + P++L+ + RA GG G K GNY + Q A
Sbjct: 159 RRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEAL 218
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNV-----ISTPAIKGTILPGITRKSIIDV 175
+G VL+L L EV + NIFV + + TP + G ILPG+ R+S++D+
Sbjct: 219 KRGCEQVLWLYGPD-HQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 277
Query: 176 AQSQG-FQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGKR 220
AQ+ G F+V ER +T+++LL A EVF +GTA V PV I Y +
Sbjct: 278 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRN 329
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 320 bits (823), Expect = e-110
Identities = 84/232 (36%), Positives = 122/232 (52%), Gaps = 14/232 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
RM A R +P E+ +E ++ V ++ W+P S SLYIRP +G+ LG+
Sbjct: 119 RMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKP 178
Query: 62 PEYTFLIYVSPVGNYFKEG-IAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
+ + +SPVG YF G P++L + RA GGTG K GNY + L AQ A
Sbjct: 179 TKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAV 238
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-----VISTPAIKGTILPGITRKSIIDV 175
G VL+L + EV + N+F+ N ++TP + G ILPG+TR+ I+D+
Sbjct: 239 DNGCQQVLWLYG-EDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDL 297
Query: 176 AQSQG-FQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGKR 220
A G F+V ER +T+++L A E+F +GTA VV PV I Y G+
Sbjct: 298 AHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGET 349
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 152 bits (385), Expect = 3e-45
Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 25/231 (10%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R + A + +P P +E + +A + + + W G L + GLA
Sbjct: 69 RFKASAALLGLPEPILEDWEKATQMGI---ESWYSHPNAGEASCTWTLSRGRSSTGLASG 125
Query: 62 P--------------EYTFLIYVSPVGNYFKEGIAPINLVVEHELHRAT----PGGTGGV 103
E+ + S G G+ I EL + P T G
Sbjct: 126 WLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGA 185
Query: 104 KTIGNYAAVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTI 163
KT+ YAA + A AK+ G+ DV++ D + E ++ + KG+ I TP+ G I
Sbjct: 186 KTL-AYAANMAALRYAKSNGFDDVIFTD---GDRVLEGATSTVVSFKGDKIRTPSPGGDI 241
Query: 164 LPGITRKSIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
LPG T+ ++ A +G++ +E+ +++++L AD V+ + V +
Sbjct: 242 LPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRL 292
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 146 bits (370), Expect = 4e-43
Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 18/220 (8%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLL-MGSGAVLGLA 59
R+ A+ P S+++ +EA + + N S YIRPL+ +G +G+
Sbjct: 60 RLHDSAKIYRFPVSQSIDELMEACRDVIRKN-------NLTSAYIRPLIFVGDVG-MGVN 111
Query: 60 PAPEYT--FLIYVSPVGNYFKEGI--APINLVVEHELHRATPGGT-GGVKTIGNYAAVLK 114
P Y+ +I P G Y I+ +V +RA P K GNY + L
Sbjct: 112 PPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS-SWNRAAPNTIPTAAKAGGNYLSSLL 170
Query: 115 AQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIID 174
S A+ GY + + LD Y+ E + N+F VK V+ TP + LPGITR +II
Sbjct: 171 VGSEARRHGYQEGIALD--VNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIK 228
Query: 175 VAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+A+ G +V E++++ E L ADEVF +GTA ++PV S+
Sbjct: 229 LAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV 268
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 143 bits (362), Expect = 2e-42
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLL-MGSGAVLGLA 59
R+ A ++ +P S + + E + + + I+ +L G + GLA
Sbjct: 49 RLGNSARQLGIPFEISFDDWFEHLIQKIQKDNL-------YHGGIKAILSGGPAS-RGLA 100
Query: 60 PAPEYT-FLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYA-AVLKAQS 117
+ + + K + ++ R +K+ NY A++ AQ
Sbjct: 101 ERGQVSQLIFQTFNYSIQ-KHPVR----LISINWLRDKANPLYQLKS-VNYLEAII-AQR 153
Query: 118 AAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQ 177
A A G D L+ + + ++ E + N+F+++ N++ TP ++ ILPGITR +I Q
Sbjct: 154 QAIAVGADDALFFN--TENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQ 211
Query: 178 SQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
V+E +T + + DAD VF T + + V S+
Sbjct: 212 QHKMSVQEISLTKKRIEDADAVFLTNSLQGIRRVLSL 248
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 141 bits (359), Expect = 2e-41
Identities = 74/222 (33%), Positives = 99/222 (44%), Gaps = 23/222 (10%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLL-MGSGAVLGLA 59
R A+ + M P + E+ EA+K V N G S YIRPL MG+ A LG+
Sbjct: 59 RFYNSAKVLRMEIPFAPEELEEAIKEVVRRN-------GYRSCYIRPLAWMGAKA-LGVN 110
Query: 60 PAPEY--TFLIYVSPVGNYFKEGI--APINLVV---EHELHRATPGGTGGVKTIGNYAAV 112
P P ++ G Y E L+ PG K GNY
Sbjct: 111 PLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGK---AKVGGNYVNS 167
Query: 113 LKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSI 172
A+ A A G + L LD + Y+ E S N+F V+ VI L GITR S+
Sbjct: 168 ALAKMEAVAAGADEALLLD--EEGYVAEGSGENLFFVRDGVIYALEHSV-NLEGITRDSV 224
Query: 173 IDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
I +A+ G++V+ T ++L ADEVF TGTA V+PV I
Sbjct: 225 IRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMI 266
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 138 bits (351), Expect = 4e-40
Identities = 65/219 (29%), Positives = 94/219 (42%), Gaps = 18/219 (8%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLL-MGSGAVLGLA 59
R+ A+ M P E A + V NK S Y+RP++ +GS LG++
Sbjct: 83 RLLNSAKIFQMDVPFDQETLEAAQRDVVRENKL-------ESCYLRPIIWIGSEK-LGVS 134
Query: 60 PAP-EYTFLIYVSPVGNYFKEGI--APINLVVEHELHRATPGGT-GGVKTIGNYAAVLKA 115
I P G Y E I + R + K G Y + A
Sbjct: 135 AKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTS-SFTRHHVNVSMVRAKASGWYVNSILA 193
Query: 116 QSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDV 175
A A GY + L LD Y+ E S N F+V + TP + L GITR ++I +
Sbjct: 194 NQEATADGYDEALLLD--VDGYVSEGSGENFFLVNRGKLYTPDLAS-CLDGITRDTVITL 250
Query: 176 AQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
A+ G +V E+ +T +E+ ADE F TGTA V+P+ +
Sbjct: 251 AKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIREL 289
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 135 bits (343), Expect = 2e-39
Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 20/218 (9%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLL-MGSGAVLGLAP 60
R+Q +R+ + Q + +K + + ++ ++ GSG G +
Sbjct: 45 RLQDACQRLMISCDFWPQLEQEMKTLAAEQQ---------NGVLKVVISRGSGG-RGYST 94
Query: 61 APEY--TFLIYVSPVGNYFKEGIA-PINLVVEHELHRATPGGTGGVKTIGNY-AAVLKAQ 116
T ++ V+ ++ I L + + G+K + N VL +
Sbjct: 95 LNSGPATRILSVTAYPAHYDRLRNEGITLALS-PVRLGRNPHLAGIKHL-NRLEQVL-IR 151
Query: 117 SAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVA 176
S + + L LD + ++ E + N+F KGNV+ TP + + GI R+ I +
Sbjct: 152 SHLEQTNADEALVLD--SEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLL 209
Query: 177 QSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+Q+ E ++EE L ADE+ + V PV +
Sbjct: 210 AQSSYQLVEVQASLEESLQADEMVICNALMPVMPVCAC 247
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 134 bits (339), Expect = 1e-38
Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLL-MGSGAVLGLA 59
R++ A+ +P S ++F + +KA K+ + I+ L SG VL
Sbjct: 62 RLKRSADFFNLPLSLSFDEFTKVLKAGADEFKQ--------EVRIKVYLFPDSGEVL--- 110
Query: 60 PAPEYTFLIYVSPVGNY-FKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSA 118
SP+ + G+ V +TP +K G VL
Sbjct: 111 --------FVFSPLNIPDLETGVEVKISNVRRIPDLSTPPA---LKITGRTDIVL----- 154
Query: 119 AK--AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVA 176
A+ DV+ L + E S N+F+VK + TP++ IL GITR+++I +A
Sbjct: 155 ARREIVDCYDVILLG--LNGQVCEGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLA 212
Query: 177 QSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+S VEER+V V EL +ADE+F T T+ V PV +
Sbjct: 213 KSLEIPVEERVVWVWELFEADEMFLTHTSAGVVPVRRL 250
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 132 bits (335), Expect = 4e-38
Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 21/218 (9%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLM-GSGAVLGLAP 60
R++ G R+ +P + + A + G + ++ G G G AP
Sbjct: 67 RLEEGCRRLAIP-LDTAALRQELLAFC---------AALGDGVAKLIVTRGEGL-RGYAP 115
Query: 61 A--PEYTFLIYVSPVGNYFKEGIA-PINLVVEHELHRATPGGTGGVKTIGNY-AAVLKAQ 116
++ SP Y + + L A G+K N VL A+
Sbjct: 116 PAEASPRRILSGSPRPAYPERHWQQGVRLFAC-RTRLAEQPLLAGLKH-LNRLEQVL-AR 172
Query: 117 SAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVA 176
+ G+++ L LD + E N+ +V + P ++ + G+ R +++ A
Sbjct: 173 AEWSDAGHAEGLMLDVHE--RVVEGVFSNLLLVLDGTLVAPDLRRCGVAGVMRAELLERA 230
Query: 177 QSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+ G + R V++ EL ADEVF + + PV ++
Sbjct: 231 EGIGVPLAIRDVSMAELATADEVFLCNSQFGIWPVRAL 268
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 122 bits (308), Expect = 1e-34
Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 30/214 (14%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R++ A + + P E F+E ++A + A + + +R V
Sbjct: 44 RLRRHALALGLSYPGDEAFLEDLEALLRAFPK--------APCLRLRFTVGEGVRLSEAR 95
Query: 62 PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYA-AVLKAQSAAK 120
P + P+ Y +EG+ + + +H KT GNY L A A+
Sbjct: 96 P----YAPL-PLSLY-REGVRVR--LTGYRVHPDLAR----YKT-GNYLPYRL-ALEEAR 141
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
+G + L LD ++ + S + + + + L GITR+ + + A+ G
Sbjct: 142 KEGAFEGLLLD--AFGHVVDGSRTSPLLFREGTLYLLE---GGLEGITREKVAEAARGLG 196
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+VE L E L + G+ V + PV
Sbjct: 197 LRVERGLFRPEGL--RGHLLLAGSGVGLLPVRPP 228
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 122 bits (308), Expect = 3e-34
Identities = 54/224 (24%), Positives = 87/224 (38%), Gaps = 33/224 (14%)
Query: 2 RMQVGAERMCMPSP-SVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLL-MGSGAVLGLA 59
R+ AE++ + P + ++F + + V N + +I + G+
Sbjct: 50 RLYASAEKIRITIPYTKDKFHQLLHELVEKN-------ELNTGHIYFQVTRGTSP-RAHQ 101
Query: 60 -PAPEYTFLIYVSPVGNYF-----KEGIAPINLVVEHE--LHRATPGGTGGVKTIGNY-A 110
P +I N ++G+ VE L +K++ N
Sbjct: 102 FPENTVKPVIIGYTKENPRPLENLEKGVKAT--FVEDIRWLRCD-------IKSL-NLLG 151
Query: 111 AVLKAQSAAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRK 170
AVL A+ A KG + + L + E SS N+F +K ++ T IL GITR
Sbjct: 152 AVL-AKQEAHEKGCYEAI-LH--RNNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRD 207
Query: 171 SIIDVAQSQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
+I A V+E T E L DE+F T T ++PV I
Sbjct: 208 VVIACANEINMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI 251
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 95.1 bits (237), Expect = 2e-24
Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 32/214 (14%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R+ A + ++ E + + + ++ R L + +
Sbjct: 39 RLYGSAAELGFA-CDPQRIAEVLSDALDGAR--------TAMRTR-LALARNGDATASAQ 88
Query: 62 PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKA 121
P Y L +A + KT A+S
Sbjct: 89 P-YEPLAADKVW----ILRLART--------RLDSQNTLLRHKTS-RRQLYTHARSEYLV 134
Query: 122 KGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN-VISTPAIKGTILPGITRKSIIDVAQSQG 180
+VL + + + E + N+F G+ V++TP + +LPG+ R ++D +
Sbjct: 135 TQADEVLLAN--ERGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEGR--- 189
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
EE + + ++L A +F + + P +
Sbjct: 190 --AEEAIYSYDDLKSAKALFVGNSLRGLIPAKLV 221
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 67.4 bits (165), Expect = 3e-14
Identities = 26/202 (12%), Positives = 55/202 (27%), Gaps = 39/202 (19%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R + + + + A A +G + R VL P
Sbjct: 27 RYEKSLLKFYPKMKLQPFDLAKIIAKHTALF----THREGLIRCRIDYNHHDYVLQCFPY 82
Query: 62 PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKA 121
+ + V + +K + +L K
Sbjct: 83 QQKVYR---------------TFKPVFCDHIDY-------SLKF--SDRTLLNN--LLKQ 116
Query: 122 KGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGF 181
K D + + + + + S N+ + N TP +L G R +++
Sbjct: 117 KEECDEIMII--RQGKVTDCSIGNLIFRQNNQWITP--DKPLLEGTQRAKLLEQ-----K 167
Query: 182 QVEERLVTVEELLDADEVFCTG 203
++ R + E+L +E+
Sbjct: 168 KIIAREIFFEDLAQYEEIRLIN 189
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2;
solution structure, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 126
Score = 30.0 bits (67), Expect = 0.25
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 15 PSVEQFVEAVKATVL----ANKRWIPPSGKG 41
P + ++ VKA V+ ++ W P G G
Sbjct: 9 PDDDSYIVRVKAVVMTRDDSSGGWFPQEGGG 39
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain,
human sprouty-related, EVH1 domain-containing PR
Q7Z699; 2.45A {Homo sapiens}
Length = 130
Score = 29.2 bits (65), Expect = 0.50
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 13 PSPSVEQFVEAVKATVL----ANKRWIPPSGKG 41
V+A V+ ++ W+P G G
Sbjct: 5 HHHHSHMSYARVRAVVMTRDDSSGGWLPLGGSG 37
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A
{Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Length = 118
Score = 29.2 bits (65), Expect = 0.51
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 18 EQFVEAVKATVL----ANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPV 73
+ V+A V+ ++ W+ G G + L + FL+
Sbjct: 3 DDSYARVRAVVMTRDDSSGGWLQLGGGGLSSV-----TVSKTLQPGDSGGTEFLV----H 53
Query: 74 GNYFKEGIAPINLVVEHEL--HRATP 97
G ++ + V+ +L ++ TP
Sbjct: 54 GERLRDKTVVLECVLRRDLVYNKVTP 79
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase,
bacterial cell WALL, carbohydrate esterase; 1.7A
{Bacillus anthracis} SCOP: c.6.2.3
Length = 247
Score = 29.6 bits (67), Expect = 0.62
Identities = 5/28 (17%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 171 SIIDVAQSQGFQVEERLVTVEELLDADE 198
IID + +G+ ++++L+ +++
Sbjct: 223 KIIDDLREKGYH----FKSLDDLVKSNQ 246
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Length = 240
Score = 29.6 bits (67), Expect = 0.63
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 171 SIIDVAQSQGFQVEERLVTVEELLDADEV 199
I + QG+ ++++L+ E+
Sbjct: 211 DAITDLKKQGYT----FKSIDDLMFEKEM 235
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 29.3 bits (66), Expect = 0.86
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 172 IIDVAQSQGFQVEERLVTVEELL 194
+ID +S+G+ R VTV E L
Sbjct: 220 LIDTLKSKGY----RAVTVGECL 238
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Length = 230
Score = 29.2 bits (66), Expect = 0.93
Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 4/23 (17%)
Query: 172 IIDVAQSQGFQVEERLVTVEELL 194
++ ++G TV + L
Sbjct: 203 MLQEVNARGL----IATTVGDCL 221
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native
protein, microsporidian, chitin deacetylase, hydrolase,
inactive; 1.50A {Encephalitozoon cuniculi}
Length = 254
Score = 28.9 bits (65), Expect = 1.1
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 172 IIDVAQSQGFQVEERLVTVEELLDADE 198
++ + + +G+ R V ++E L +
Sbjct: 198 MVKIGKDKGY----RFVNMDECLQGYK 220
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.4
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 135 KRYLEEVSSCNIFVVKGNVISTPA--IKGTI 163
K+ L+ +S ++ S PA IK T+
Sbjct: 23 KK-LQ--ASLKLYADD----SAPALAIKATM 46
Score = 25.7 bits (55), Expect = 8.8
Identities = 6/29 (20%), Positives = 16/29 (55%), Gaps = 8/29 (27%)
Query: 2 RMQVGAERMCMP--SPSVEQFVEAVKATV 28
++Q + ++ +P++ A+KAT+
Sbjct: 24 KLQ-ASLKLYADDSAPAL-----AIKATM 46
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 28.8 bits (64), Expect = 1.5
Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 172 IIDVAQSQGFQVEERLVTVEELLDA 196
+I+ ++QG+ VT+ E+L+
Sbjct: 398 VIEYLKNQGYT----FVTIPEMLNT 418
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme,
dockerin type I\:polysaccharide...; acetyl-xylan,
esterases, metal-ION; 1.05A {Clostridium thermocellum}
SCOP: c.6.2.3 PDB: 2c79_A
Length = 216
Score = 28.4 bits (64), Expect = 1.6
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 172 IIDVAQSQGFQVEERLVTVEELLDADEV 199
II +S+G++ VT+ EL V
Sbjct: 171 IIPTLKSRGYE----FVTLTELFTLKGV 194
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase;
HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Length = 336
Score = 27.2 bits (61), Expect = 4.9
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 9/32 (28%)
Query: 14 SPSVEQFVEAVKATVLANKRWIPPSGKGSLYI 45
P + ++A++ SGKG I
Sbjct: 78 PPKSKNILKAIRQV---------NSGKGVFVI 100
>1un8_A Dihydroxyacetone kinase; transferase; HET: MYY; 2.5A {Citrobacter
freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A*
Length = 552
Score = 27.2 bits (61), Expect = 5.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 14 SPSVEQFVEAVKATVLANKRWIPPSGKGSLYI 45
SPSV+ + A++A G L I
Sbjct: 85 SPSVDAVLTAIQAV---------TGEAGCLLI 107
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A
{Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A*
1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Length = 366
Score = 26.5 bits (59), Expect = 7.1
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 9/32 (28%)
Query: 14 SPSVEQFVEAVKATVLANKRWIPPSGKGSLYI 45
SP+ ++ E G+G L I
Sbjct: 90 SPTPDKIFECAMQV---------DGGEGVLLI 112
>3ct4_A PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding
subunit DHAK; dihydroxyacetone kinase subunit,
tranferase; 2.50A {Lactococcus lactis subsp}
Length = 332
Score = 26.4 bits (59), Expect = 8.0
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 9/32 (28%)
Query: 14 SPSVEQFVEAVKATVLANKRWIPPSGKGSLYI 45
SP+ +Q EA+K+ G G L I
Sbjct: 82 SPTPDQIYEAIKSA---------DEGAGVLLI 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.394
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,444,073
Number of extensions: 211499
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 35
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)