RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027646
(220 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 125 bits (314), Expect = 4e-35
Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 12/231 (5%)
Query: 1 MRMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
RM A R+C+PS + +E ++ + +K W+P + SLY+RP+L+G+ LG++
Sbjct: 96 DRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQ 155
Query: 61 APEYTFLIYVSPVGNYFK-EGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAA 119
+ + PVG YF + P++L+ + RA GG G K GNY + Q A
Sbjct: 156 PRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEA 215
Query: 120 KAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGN----VISTPAIKGTILPGITRKSIIDV 175
+G VL+L + E + + TP + G ILPG+ R+S++D+
Sbjct: 216 LKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDM 275
Query: 176 AQSQG-FQVEERLVTVEELLDA------DEVFCTGTAVVVSPVGSITYLGK 219
AQ+ G F+V ER +T+++LL A EVF +GTA V PV I Y +
Sbjct: 276 AQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDR 326
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 111 bits (277), Expect = 4e-30
Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 12/217 (5%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R+ A+ P + A + I + S YIRPL+ +G+ P
Sbjct: 56 RLHDSAKIYRFPVSQSIDELME------ACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPP 109
Query: 62 PEYTF--LIYVSPVGNYFKEGIAPINL-VVEHELHRATPGGTGGVK-TIGNYAAVLKAQS 117
Y+ +I P G Y + + +RA P GNY + L S
Sbjct: 110 AGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGS 169
Query: 118 AAKAKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQ 177
A+ GY + + LD Y+ E + N+F VK V+ TP + LPGITR +II +A+
Sbjct: 170 EARRHGYQEGIALDVNG--YISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAK 227
Query: 178 SQGFQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
G +V E++++ E L ADEVF +GTA ++PV S+
Sbjct: 228 ELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV 264
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 82.7 bits (203), Expect = 9e-20
Identities = 46/214 (21%), Positives = 73/214 (34%), Gaps = 13/214 (6%)
Query: 2 RMQVGAERMCMPSPSVEQFVEA-VKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAP 60
R+ AE++ + P + + V N+ G +Y + S
Sbjct: 50 RLYASAEKIRITIPYTKDKFHQLLHELVEKNELNT-----GHIYFQVTRGTSPRAHQFPE 104
Query: 61 APEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAK 120
+I + E + E R + N + A+ A
Sbjct: 105 NTVKPVIIGYTKENPRPLENLEKGVKATFVEDIRWLRCDIKSL----NLLGAVLAKQEAH 160
Query: 121 AKGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQG 180
KG + + + E SS N+F +K ++ T IL GITR +I A
Sbjct: 161 EKGCYEAILHRN---NTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEIN 217
Query: 181 FQVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
V+E T E L DE+F T T ++PV I
Sbjct: 218 MPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI 251
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 77.4 bits (189), Expect = 8e-18
Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 10/213 (4%)
Query: 2 RMQVGAERMCMPSPSVEQFVEAVKATVLANKRWIPPSGKGSLYIRPLLMGSGAVLGLAPA 61
R+Q +R+ + Q + K G L + G +
Sbjct: 45 RLQDACQRLMISCDFWPQLEQE-------MKTLAAEQQNGVLKVVISRGSGGRGYSTLNS 97
Query: 62 PEYTFLIYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKA 121
T ++ V+ ++ + + G+K + VL +
Sbjct: 98 GPATRILSVTAYPAHYDRLRNEGITLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQT 157
Query: 122 KGYSDVLYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKGTILPGITRKSIIDVAQSQGF 181
L + ++ E + N+F KGNV+ TP + + GI R+ I + +
Sbjct: 158 NADE---ALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSY 214
Query: 182 QVEERLVTVEELLDADEVFCTGTAVVVSPVGSI 214
Q+ E ++EE L ADE+ + V PV +
Sbjct: 215 QLVEVQASLEESLQADEMVICNALMPVMPVCAC 247
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase
BA0424 {Bacillus anthracis [TaxId: 1392]}
Length = 235
Score = 29.8 bits (66), Expect = 0.22
Identities = 5/26 (19%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 172 IIDVAQSQGFQVEERLVTVEELLDAD 197
IID + +G+ ++++L+ ++
Sbjct: 214 IIDDLREKGY----HFKSLDDLVKSN 235
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE
homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId:
4081]}
Length = 364
Score = 25.3 bits (54), Expect = 6.3
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 9/94 (9%)
Query: 68 IYVSPVGNYFKEGIAPINLVVEHELHRATPGGTGGVKTIGNYAAVLKAQSAAKAKGYSDV 127
+ ++P+ G P + H R+T GG IG + + GY DV
Sbjct: 22 VVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGL----LIGEATVI-----SETGIGYKDV 72
Query: 128 LYLDCVHKRYLEEVSSCNIFVVKGNVISTPAIKG 161
+ + + + G G
Sbjct: 73 PGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVG 106
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1
domain-containing protein 1, Spred-1 {Western clawed
frog (Xenopus tropicalis) [TaxId: 8364]}
Length = 114
Score = 24.4 bits (53), Expect = 7.4
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 24 VKATVL----ANKRWIPPSGKG 41
V+A V+ ++ W+ G G
Sbjct: 5 VRAVVMTRDDSSGGWLQLGGGG 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.394
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 812,883
Number of extensions: 36755
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 8
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)