Query 027647
Match_columns 220
No_of_seqs 167 out of 1248
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 13:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02307 phosphoglucomutase 100.0 7.6E-39 1.6E-43 307.8 21.6 197 1-203 365-561 (579)
2 cd03085 PGM1 Phosphoglucomutas 100.0 2.7E-38 5.9E-43 302.5 19.8 187 1-204 341-531 (548)
3 KOG0625 Phosphoglucomutase [Ca 100.0 2.9E-38 6.3E-43 287.3 15.8 194 1-204 348-541 (558)
4 PTZ00150 phosphoglucomutase-2- 100.0 1.1E-34 2.3E-39 279.5 20.2 180 1-200 372-568 (584)
5 cd05801 PGM_like3 This bacteri 100.0 1.8E-29 3.9E-34 240.4 16.5 153 1-182 349-508 (522)
6 TIGR01132 pgm phosphoglucomuta 100.0 5.1E-29 1.1E-33 238.4 17.6 168 1-200 365-539 (543)
7 PRK07564 phosphoglucomutase; V 100.0 4.1E-29 8.9E-34 239.0 16.2 167 1-200 364-538 (543)
8 cd05800 PGM_like2 This PGM-lik 100.0 1.1E-28 2.4E-33 231.2 16.7 146 1-183 302-448 (461)
9 cd03089 PMM_PGM The phosphoman 100.0 2.4E-28 5.2E-33 228.0 13.1 138 1-184 292-431 (443)
10 cd05799 PGM2 This CD includes 100.0 1.5E-27 3.3E-32 225.0 17.9 145 1-196 330-483 (487)
11 cd05805 MPG1_transferase GTP-m 99.9 2.2E-27 4.8E-32 221.4 13.7 133 1-183 295-428 (441)
12 KOG1220 Phosphoglucomutase/pho 99.9 4.5E-27 9.7E-32 221.4 14.6 188 2-204 390-593 (607)
13 PRK09542 manB phosphomannomuta 99.9 5.4E-27 1.2E-31 219.4 14.6 136 1-183 293-429 (445)
14 cd05803 PGM_like4 This PGM-lik 99.9 7.7E-27 1.7E-31 218.1 13.9 134 1-183 301-435 (445)
15 COG0033 Pgm Phosphoglucomutase 99.9 4.7E-28 1E-32 222.3 4.9 180 1-205 343-522 (524)
16 PRK15414 phosphomannomutase Cp 99.9 1.1E-26 2.4E-31 218.0 13.8 133 1-180 304-437 (456)
17 COG1109 {ManB} Phosphomannomut 99.9 2.3E-26 4.9E-31 216.3 15.5 154 1-203 306-461 (464)
18 PRK14321 glmM phosphoglucosami 99.9 1.5E-26 3.3E-31 216.6 13.8 151 1-200 292-443 (449)
19 cd03088 ManB ManB is a bacteri 99.9 1.8E-26 4E-31 216.6 14.2 148 1-183 286-449 (459)
20 cd03087 PGM_like1 This archaea 99.9 5.7E-26 1.2E-30 211.7 14.3 135 1-183 291-426 (439)
21 PRK14324 glmM phosphoglucosami 99.9 6.7E-24 1.5E-28 198.7 13.2 140 1-202 303-443 (446)
22 PRK14317 glmM phosphoglucosami 99.9 1.8E-23 3.8E-28 196.7 11.1 139 1-200 316-461 (465)
23 PRK14323 glmM phosphoglucosami 99.9 2.5E-23 5.3E-28 194.3 11.0 141 1-200 295-436 (440)
24 PLN02371 phosphoglucosamine mu 99.9 1.3E-22 2.7E-27 195.9 15.8 147 1-185 393-555 (583)
25 PRK14315 glmM phosphoglucosami 99.9 1.4E-23 3E-28 196.5 8.6 126 1-183 304-430 (448)
26 PRK10887 glmM phosphoglucosami 99.9 4.1E-23 8.9E-28 193.1 10.4 129 1-184 298-427 (443)
27 TIGR01455 glmM phosphoglucosam 99.9 4E-23 8.6E-28 193.1 10.1 129 1-184 300-429 (443)
28 PRK14314 glmM phosphoglucosami 99.9 8E-23 1.7E-27 191.5 11.3 141 1-200 305-446 (450)
29 PRK14320 glmM phosphoglucosami 99.9 9.4E-23 2E-27 190.6 11.3 127 1-184 298-426 (443)
30 PRK14316 glmM phosphoglucosami 99.9 8.1E-23 1.8E-27 191.1 10.1 143 1-203 301-445 (448)
31 cd05802 GlmM GlmM is a bacteri 99.9 7.1E-23 1.5E-27 190.8 8.5 128 1-184 297-425 (434)
32 PRK14322 glmM phosphoglucosami 99.9 5.3E-22 1.2E-26 184.9 13.7 123 1-184 291-415 (429)
33 cd03086 PGM3 PGM3 (phosphogluc 99.9 4.6E-22 9.9E-27 189.5 10.7 135 1-183 333-500 (513)
34 PRK14318 glmM phosphoglucosami 99.9 9E-22 1.9E-26 184.3 11.6 66 1-75 303-369 (448)
35 PRK14319 glmM phosphoglucosami 99.9 1.7E-21 3.8E-26 181.5 12.5 135 1-200 288-423 (430)
36 cd03084 phosphohexomutase The 99.8 5.8E-21 1.3E-25 173.5 11.2 67 1-76 242-309 (355)
37 PTZ00302 N-acetylglucosamine-p 99.8 2.4E-18 5.1E-23 165.9 12.3 144 1-203 397-582 (585)
38 PF02880 PGM_PMM_III: Phosphog 99.8 1.1E-18 2.4E-23 135.0 6.6 69 1-78 44-113 (113)
39 PLN02895 phosphoacetylglucosam 99.7 8.4E-18 1.8E-22 161.3 11.6 144 1-204 365-556 (562)
40 PF00408 PGM_PMM_IV: Phosphogl 99.4 6.8E-14 1.5E-18 100.4 4.0 36 145-183 24-59 (73)
41 KOG2537 Phosphoglucomutase/pho 97.2 0.0012 2.5E-08 63.0 7.1 29 157-188 499-527 (539)
42 COG0033 Pgm Phosphoglucomutase 66.0 8 0.00017 37.1 4.0 49 33-90 381-429 (524)
43 COG0124 HisS Histidyl-tRNA syn 50.0 6.7 0.00015 37.3 0.7 31 146-179 64-94 (429)
44 PF08253 Leader_Erm: Erm Leade 48.2 10 0.00022 20.2 0.9 8 212-219 5-12 (19)
45 PF14085 DUF4265: Domain of un 46.2 1.1E+02 0.0024 23.5 6.9 36 143-182 26-64 (117)
46 cd00503 Frataxin Frataxin is a 35.8 60 0.0013 24.7 3.8 22 145-167 65-86 (105)
47 COG1965 CyaY Protein implicate 34.0 35 0.00077 26.3 2.3 23 144-167 64-86 (106)
48 PF15025 DUF4524: Domain of un 30.3 54 0.0012 26.8 2.9 23 146-168 7-29 (148)
49 PF00017 SH2: SH2 domain; Int 29.6 35 0.00075 23.5 1.5 14 154-168 20-33 (77)
50 cd04931 ACT_PAH ACT domain of 29.1 2E+02 0.0043 21.1 5.6 23 158-182 44-66 (90)
51 PRK00446 cyaY frataxin-like pr 28.2 94 0.002 23.7 3.8 18 190-207 85-102 (105)
52 cd04880 ACT_AAAH-PDT-like ACT 22.7 2.5E+02 0.0055 19.0 5.7 23 158-182 29-51 (75)
53 PF06799 DUF1230: Protein of u 22.7 42 0.00091 27.3 1.0 24 5-30 84-107 (144)
54 COG4254 Uncharacterized protei 22.6 66 0.0014 29.4 2.3 23 145-168 95-117 (339)
55 PF09960 DUF2194: Uncharacteri 21.7 2.5E+02 0.0053 28.0 6.2 37 28-79 478-516 (585)
56 PF01187 MIF: Macrophage migra 20.9 2.9E+02 0.0063 20.8 5.4 56 148-207 36-91 (114)
57 cd04905 ACT_CM-PDT C-terminal 20.2 3E+02 0.0066 18.9 5.9 23 158-182 31-53 (80)
No 1
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=7.6e-39 Score=307.80 Aligned_cols=197 Identities=73% Similarity=1.204 Sum_probs=156.6
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCccCCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhCC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGR 80 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG~ 80 (220)
+++|+||||||+++|.+++++||||||+||+++|++|||||+|+++++++++.++++...++|+|||.+.|++||++||+
T Consensus 365 ~~~t~vGfk~I~~~m~e~~~~~GgEeSgG~~~~~~~dkDGi~aallllel~a~~~~~~~~~~~~~tl~~~l~el~~~~G~ 444 (579)
T PLN02307 365 FFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKDVLPGGKLVTVEDIVREHWATYGR 444 (579)
T ss_pred EEEcCchHHHHHHHHHhCCcEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCcccccCcCCHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999988899999999999999999998876422235667999999999999999
Q ss_pred ceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEEE
Q 027647 81 HYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLV 160 (220)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv~ 160 (220)
|++.+.++++.+.+...++++.|+ ..+|. ...+.++..++|..++||.+.++.++.++++||++|.|+||+|++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~lr---~~~~~---~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~dglk~~~~dg~wi~ 518 (579)
T PLN02307 445 NFYSRYDYENVDSEAANKMMDHLR---DLVNK---SKKGIKYGVYTLAFADDFEYTDPVDGSVSSKQGIRFLFTDGSRII 518 (579)
T ss_pred CeeeecceecCCHHHHHHHHHHHh---ccccc---ccCCCEecceEEEEEeeceeecCCCCCCCccCeEEEEEcCCeEEE
Confidence 999999988755444455555554 33221 222333334678999999865566677889999999999999999
Q ss_pred EecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHHHHC
Q 027647 161 FRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELC 203 (220)
Q Consensus 161 iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~~~~ 203 (220)
+||||||..|||||+|+|++..+.++...++++....+++.++
T Consensus 519 ~RpSGTE~~~PkiK~Y~e~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (579)
T PLN02307 519 FRLSGTGSAGATIRLYIEQYEKDPSKHGRDAQEALKPLIDVAL 561 (579)
T ss_pred EEcCCCCCCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999333399999999877756666777777777766544
No 2
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=2.7e-38 Score=302.50 Aligned_cols=187 Identities=68% Similarity=1.188 Sum_probs=157.2
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCccCCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhCC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGR 80 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG~ 80 (220)
+++|+||||||+++|.+.+++||||||+|++++|+++||||+|+++++++++..++ ||++++++||++||+
T Consensus 341 v~~t~vG~k~I~~~m~~~~~~~GgEeSgg~~~~~~~~kDGi~aal~llella~~g~---------tLsell~~i~~~~G~ 411 (548)
T cd03085 341 LFETPTGWKFFGNLMDAGKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAHRNV---------SVEDIVKEHWQKYGR 411 (548)
T ss_pred EEEcCchHHHHHHHHhcCCceEEEeccCCccCCCccCCcHHHHHHHHHHHHHHHCc---------CHHHHHHHHHHHhCc
Confidence 47999999999999999889999999999988899999999999999999998665 999999999999998
Q ss_pred ceeeeeeEEecChhhHHHHHHHHHHhhcCCCccccc----ccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCC
Q 027647 81 HYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDI----VKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDG 156 (220)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~----i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg 156 (220)
+++.+.+...++.+.+.++|+.|.+.....| ++ ++| ++|.+++||.+.+++++.++++||++|.|+||
T Consensus 412 ~~~~~~~~~~~~~~~k~~im~~l~~~~~~~~---~~~~~~~~~-----~~v~~~~d~~~~~~~~~~~~~~dglk~~~~~g 483 (548)
T cd03085 412 NFYTRYDYEEVDSEAANKMMDHLRALVSDLP---GVGKSGDKG-----YKVAKADDFSYTDPVDGSVSKKQGLRIIFEDG 483 (548)
T ss_pred ceeecccccCCCHHHHHHHHHHHHhccccCc---cccccccCC-----ceEEEEecceeccCCCCCcChhceEEEEECCC
Confidence 8877776654565667778887754212333 24 566 67999999985444456688999999999999
Q ss_pred eEEEEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHHHHCC
Q 027647 157 SRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELCP 204 (220)
Q Consensus 157 ~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (220)
+|+++|||||||-|||||+|+|+.+++..+-..+++..++.+++.+++
T Consensus 484 ~wi~iRpSGTE~~~Pkir~Y~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (548)
T cd03085 484 SRIIFRLSGTGSSGATIRLYIESYEKDPSKYGLDAQVALKPLIEIALK 531 (548)
T ss_pred eEEEEECCCCCCCCceEEEEEEEecCChhhcccCHHHHHHHHHHHHHH
Confidence 999999999995555999999999999877778888999999887654
No 3
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-38 Score=287.33 Aligned_cols=194 Identities=68% Similarity=1.116 Sum_probs=172.6
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCccCCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhCC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGR 80 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG~ 80 (220)
|+||||||||+++.|+++++.+|||||+|.+++|+|+|||+||.+.|+.+||+ .|++ .+.+++.++|++||+
T Consensus 348 ~yEvPTGWKfF~nLmDAgklsiCGEESFGTGSdHIREKDGiWAvlaWlsIlA~-~k~~-------~vedI~~~~W~~YGR 419 (558)
T KOG0625|consen 348 VYEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAH-NKQN-------VVEDIVKEHWAKYGR 419 (558)
T ss_pred eEEcCchHHHHHhhhcccceeecccccccCCccccccccchhhHHHHHHHHHh-cccc-------cHHHHHHHHHHHhCc
Confidence 68999999999999999999999999999999999999999999999999998 4422 399999999999999
Q ss_pred ceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEEE
Q 027647 81 HYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLV 160 (220)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv~ 160 (220)
++++|++|+.++.+++.+||+.|+++... +....++. ..-..++|...+||+|+||+||++++.|||++.|+||++++
T Consensus 420 ~fftRYDYE~~e~e~ank~m~~l~a~~~~-~~vg~~~~-~~~~~y~V~~ad~F~Y~DPvDGSvs~~QGlri~F~dGsR~V 497 (558)
T KOG0625|consen 420 NFFTRYDYEEVEAEGANKMMEDLEALVSD-SFVGKSFS-PGDEVYKVAKADDFEYTDPVDGSVSKKQGLRIVFEDGSRIV 497 (558)
T ss_pred cceeecchhhcChHhHHHHHHHHHHHhcc-cccccccc-CCCceEEEEecCCceecCCCCCcccccCceEEEEcCCcEEE
Confidence 99999999988999999999999987654 21111111 01124889999999999999999999999999999999999
Q ss_pred EecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHHHHCC
Q 027647 161 FRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELCP 204 (220)
Q Consensus 161 iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (220)
+|.|||-..|+.||+|+|.++++.++...+++++|++++..+++
T Consensus 498 fRLSGTGSsGATiRLYie~ye~d~s~~~~~aq~~LkPli~~alk 541 (558)
T KOG0625|consen 498 FRLSGTGSSGATIRLYIESYEKDVSKIDQDAQVALKPLIDIALK 541 (558)
T ss_pred EEeccCCCCCceEEEehhhhccchhhhCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999888889999999999997654
No 4
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=279.52 Aligned_cols=180 Identities=22% Similarity=0.336 Sum_probs=134.5
Q ss_pred CeEeccccHHHHHHHHc-----C-CcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHH
Q 027647 1 MYQVPTGWKFFGNLMDA-----G-LCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRK 73 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~-----~-~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~ 73 (220)
+++|+||||||+++|.+ + .++||||||+||+ ++|++|||||+|+++++++++.+..++. ||+++|++
T Consensus 372 v~~t~tGfk~I~~~m~~~~~~~~~~~~~ggEeSgG~~~~~~~~~kDgi~aal~ile~~~~l~~~g~------sL~e~l~~ 445 (584)
T PTZ00150 372 YDETLTGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVAEMALYLYERGK------TLVEHLES 445 (584)
T ss_pred EEECCCChHHHHHHHHHHHhcCCceEEEEEeccCcccCCCCCCCcHHHHHHHHHHHHHHHHHHcCC------CHHHHHHH
Confidence 47999999999999985 2 4899999999998 9999999999999999999765544444 99999999
Q ss_pred HHHhhCCceeeeeeEEecChhhHHHHHHHHHHhhc--CCCcccccccCcccccceeeeeccccc-cC--CCCC--Ccc--
Q 027647 74 HWATYGRHYYTRYDYENVDAGAAKELMANLVKMQS--SLPEVNDIVKGICSDVSKVVNADEFEY-KD--PVDG--SIS-- 144 (220)
Q Consensus 74 l~~~yG~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~p~~~~~i~g~~~~~~~V~~~~d~~~-~d--~~~~--~~~-- 144 (220)
||++||+|+..+.++...+.+...++++.| +. ++|. +++| ++|++++||.. .+ ..++ .+|
T Consensus 446 l~~~~G~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~---~~~g-----~~v~~~~d~~~~~~~~~~~~~~~lp~~ 514 (584)
T PTZ00150 446 LYKQYGYHFTNNSYYICYDPSRIVSIFNDI---RNNGSYPT---KLGG-----YPVTRIRDLTTGYDTATPDGKPLLPVS 514 (584)
T ss_pred HHHHHCCCccceeeEecCCHHHHHHHHHHH---hccCCcch---hhCC-----eeEEEEEecccccccccCCCcccCCCc
Confidence 999999665444444222444444555544 44 4454 7888 57999999852 11 2233 234
Q ss_pred -ccCeEEEEEcCCeEEEEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHH
Q 027647 145 -KHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVR 200 (220)
Q Consensus 145 -~~dgl~~~~~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~ 200 (220)
++|||+|.|+||+|+++||||||| |||+|+|+......+..+++.+.++.+.+
T Consensus 515 ~~~~~lk~~~~~g~~~~~RpSGTEP---kik~Y~e~~~~~~~~~~~~~~~~~~~~~~ 568 (584)
T PTZ00150 515 ASTQMITFYFENGAIITIRGSGTEP---KLKWYAELSGTKDEAVEKELAALVDEVVE 568 (584)
T ss_pred ccCCeEEEEEcCCeEEEEEcCCCCC---eEEEEEEecchhHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999 99999999544433333444444444444
No 5
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.96 E-value=1.8e-29 Score=240.41 Aligned_cols=153 Identities=24% Similarity=0.355 Sum_probs=118.6
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CC-----CCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHH
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SD-----HIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKH 74 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~-----~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l 74 (220)
+++|+||||||+++|.+..++||||||+|++ ++ |.++||||+|+++++++++..++ +|+++++++
T Consensus 349 ~~~t~vG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~~le~la~~~~---------~L~~~l~~l 419 (522)
T cd05801 349 LYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCLLAAEILAVTGK---------DPGQLYQEL 419 (522)
T ss_pred eeecCccHHHHHHHHhcCCeEEEEeccCceEeccCCCCCcccCchHHHHHHHHHHHHHHhCC---------CHHHHHHHH
Confidence 4799999999999999989999999999987 66 89999999999999999997665 999999999
Q ss_pred HHhhCCceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEc
Q 027647 75 WATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFE 154 (220)
Q Consensus 75 ~~~yG~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~ 154 (220)
|++||.+++.+.++.+ . ...+.++.++... ...+ ..+.+ .+|.++.||... .+...||+|+.|+
T Consensus 420 ~~~~g~~~~~~~~v~~-~-~~~k~~~~~~~~~-~~~~---~~~~~-----~~~~~~~~~~~~-----~~~~~DGvk~~~~ 483 (522)
T cd05801 420 TERFGEPYYARIDAPA-T-PEQKARLKKLSPE-QVTA---TELAG-----DPILAKLTRAPG-----NGASIGGLKVTTA 483 (522)
T ss_pred HHHHCcCeeeccCCCC-h-HHHHHHHHHHhcc-CCCc---hHhCC-----CceEEEEecccC-----CCccCceEEEEEc
Confidence 9999988888877764 2 2223333333211 0122 13555 345555565411 2347899999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEEEee-cC
Q 027647 155 DGSRLVFRLSGTGSEGATIRLYIEQY-EK 182 (220)
Q Consensus 155 dg~wv~iRpSGTEP~~pkiKiY~Ea~-~~ 182 (220)
|| |++|||||||| +||+|+|+. ++
T Consensus 484 ~g-WvliRpSgTEP---~iriy~Ea~~~~ 508 (522)
T cd05801 484 NG-WFAARPSGTED---VYKIYAESFLSE 508 (522)
T ss_pred Ce-EEEEEccCCCc---eEEEEEEecCCH
Confidence 87 99999999999 999999994 53
No 6
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=99.96 E-value=5.1e-29 Score=238.37 Aligned_cols=168 Identities=22% Similarity=0.309 Sum_probs=122.8
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CC-----CCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHH
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SD-----HIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKH 74 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~-----~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l 74 (220)
+++|+||||||+++|.+.+++||||||+|++ +. |.+++|||+|+++++++++..++ ||+++++++
T Consensus 365 v~~t~vG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~ile~la~~~~---------~L~~ll~~l 435 (543)
T TIGR01132 365 LVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGK---------NPQQHYNEL 435 (543)
T ss_pred eeecCccHHHHHHHHhcCCeEEEEeccCceEecccCCCCcccCcHHHHHHHHHHHHHHHhCC---------CHHHHHHHH
Confidence 4799999999999999989999999999987 44 89999999999999999997766 999999999
Q ss_pred HHhhCCceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEc
Q 027647 75 WATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFE 154 (220)
Q Consensus 75 ~~~yG~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~ 154 (220)
|++||.+++.+.++.+ +...+..++.|.+. ..+| ++++|. +|+.. +... ...+...||+|+.|+
T Consensus 436 p~~~~~~~~~~~~~~~--~~~~k~~~~~l~~~-~~~~---~~~~~~-----~~~~~--~~~~---~~~~~~~DGvki~~~ 499 (543)
T TIGR01132 436 AAKFGAPSYNRIQAPA--TSAQKARLKKLSPE-MVSA---TTLAGD-----PITAR--LTAA---PGNGAAIGGLKVTTD 499 (543)
T ss_pred HHHhCCceEEEEecCC--hHHHHHHHHHHhcc-CCCh---HHhCCc-----eeEEE--Eecc---CCCCccCCeEEEEEc
Confidence 9999987766666543 22223333555321 1233 367774 33321 1100 012446899999998
Q ss_pred CCeEEEEecCCCCCCCCeEEEEEEee-cCCcchhhhhHHHHHHHHHH
Q 027647 155 DGSRLVFRLSGTGSEGATIRLYIEQY-EKDPSKTGRDSQEALAPLVR 200 (220)
Q Consensus 155 dg~wv~iRpSGTEP~~pkiKiY~Ea~-~~~~~~~~~~~~~~~~~~~~ 200 (220)
|| |++|||||||| +||+|+|+. +.+ ..+++.+.+..+++
T Consensus 500 ~g-WvliRpSgTEP---~irvy~Ea~~~~~---~~~~l~~~~~~~v~ 539 (543)
T TIGR01132 500 NG-WFAARPSGTED---VYKIYCESFKGEE---HLKQIEKEAVEIVS 539 (543)
T ss_pred Cc-EEEEecCCCCc---eEEEEEEecCCHH---HHHHHHHHHHHHHH
Confidence 87 99999999999 999999994 543 33444444444444
No 7
>PRK07564 phosphoglucomutase; Validated
Probab=99.96 E-value=4.1e-29 Score=239.03 Aligned_cols=167 Identities=31% Similarity=0.462 Sum_probs=119.3
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-C-----CCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHH
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-S-----DHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKH 74 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~-----~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l 74 (220)
+++|+||||||+++|.+.+++||||||+|++ . .|+++|||++|+++++++++..++ +|+++++++
T Consensus 364 v~~t~vG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~ile~la~~~~---------~L~ell~~l 434 (543)
T PRK07564 364 LYEVPVGFKWFVNGLDDGSLGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAAEILAVTGK---------SPSEIYREL 434 (543)
T ss_pred eeecchHHHHHHHHHhcCceEEEecCcCCeeecccCCCCccccchHHHHHHHHHHHHHHhCC---------CHHHHHHHH
Confidence 4799999999999999989999999999984 2 389999999999999999997665 999999999
Q ss_pred HHhhCCceeeeeeEEecChhhHHHHHHHHHHhhcCC--CcccccccCcccccceeeeeccccccCCCCCCccccCeEEEE
Q 027647 75 WATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSL--PEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYL 152 (220)
Q Consensus 75 ~~~yG~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~ 152 (220)
|++||++++.+.++.+ ..+.+ ..++.|. ... |. .++|.+ |....+-. .++. +..|||||.
T Consensus 435 ~~~~g~~~~~~~~~~~-~~~~k-~~~~~l~---~~~~~~~---~~~~~~-----~~~~~~~~----~~~~-~~~DGlki~ 496 (543)
T PRK07564 435 WARFGRPYYSRHDAPA-TPEQK-AALRKLS---PELVGAT---ELAGDP-----IDASLTEA----PGNG-AAIGGLKVV 496 (543)
T ss_pred HHHhCCceEEEecCCc-cHHHH-HHHHHHh---ccCCCch---hhCCcc-----eEEEEecC----cCCc-ccCCeEEEE
Confidence 9999988777776653 22222 2344443 222 22 455532 22211100 0011 258999999
Q ss_pred EcCCeEEEEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHH
Q 027647 153 FEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVR 200 (220)
Q Consensus 153 ~~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~ 200 (220)
|+|| |++|||||||| +||+|+|+.+.+ +..+++.+.+..+++
T Consensus 497 ~~~g-WvlvRpSgTEP---~iriy~Ea~~~~--~~~~~l~~~~~~~~~ 538 (543)
T PRK07564 497 TENG-WFAARPSGTET---TYKIYAESFEGD--EHLHQIQKEAQEIVA 538 (543)
T ss_pred EcCC-EEEEEccCCCC---eEEEEEEecCCH--HHHHHHHHHHHHHHH
Confidence 9998 99999999999 999999995332 223444444444444
No 8
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=99.96 E-value=1.1e-28 Score=231.24 Aligned_cols=146 Identities=33% Similarity=0.532 Sum_probs=119.4
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||+|+|++ +++.+++||++|+++++++++..++ +|+++++++|++||
T Consensus 302 v~~t~~G~~~v~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ile~la~~~~---------~L~~l~~~l~~~~g 372 (461)
T cd05800 302 VYETPVGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGK---------PLSELVAELEEEYG 372 (461)
T ss_pred eeeCCCCHHHHHHHHhhCCeEEEEcCcCceeCCCCCCCchHHHHHHHHHHHHHhhCC---------CHHHHHHHHHHHhC
Confidence 4789999999999999999999999999998 9999999999999999999987655 99999999999999
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
++++.+.++++ +.+.+.++|+.|.+ ..+. ++++. ++. .+...||+|+.|+||+|+
T Consensus 373 ~~~~~~~~i~~-~~~~~~~v~~~l~~---~~~~---~~~~~-----~~~-------------~~~~~dGvrv~~~d~~wv 427 (461)
T cd05800 373 PSYYDRIDLRL-TPAQKEAILEKLKN---EPPL---SIAGG-----KVD-------------EVNTIDGVKLVLEDGSWL 427 (461)
T ss_pred CCceeecCeec-CHHHHHHHHHHHhc---cCch---hhCCc-----eeE-------------EEEecCeEEEEEcCCcEE
Confidence 88888888875 44455567776643 2221 22231 111 123578999999888899
Q ss_pred EEecCCCCCCCCeEEEEEEeecCC
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKD 183 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~ 183 (220)
+|||||||| ++|+|+|+.+++
T Consensus 428 lvRpS~tep---~iriy~Ea~~~~ 448 (461)
T cd05800 428 LIRPSGTEP---LLRIYAEAPSPE 448 (461)
T ss_pred EEEcCCCCc---eEEEEEecCCHH
Confidence 999999999 999999997654
No 9
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=99.95 E-value=2.4e-28 Score=228.02 Aligned_cols=138 Identities=22% Similarity=0.209 Sum_probs=109.2
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CC-CCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhh
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SD-HIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATY 78 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~-~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~y 78 (220)
+++|+||||||++.|.+.+++||||||+|++ ++ |.++|||++++++++++++..++ +|+++++++++ |
T Consensus 292 v~~t~vG~k~v~~~m~~~~~~~ggE~sgg~~~~~~~~~~~Dgi~a~l~ile~la~~~~---------~Lsel~~~~p~-~ 361 (443)
T cd03089 292 PIMWKTGHSFIKAKMKETGALLAGEMSGHIFFKDRWYGFDDGIYAALRLLELLSKSGK---------TLSELLADLPK-Y 361 (443)
T ss_pred EEEecCcHHHHHHHHHHhCCcEEEeccceEEEcCCcCCCccHHHHHHHHHHHHHhcCC---------CHHHHHHhccc-c
Confidence 4799999999999999999999999999998 98 99999999999999999997665 99999999875 2
Q ss_pred CCceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeE
Q 027647 79 GRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSR 158 (220)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~w 158 (220)
+...++++.+ +.+.+..+++.|.+. .+. .+. .+...||+|+.|+|| |
T Consensus 362 --~~~~~~~~~~-~~~~k~~~~~~l~~~---~~~---~~~-----------------------~~~~~DGiki~~~~~-W 408 (443)
T cd03089 362 --FSTPEIRIPV-TEEDKFAVIERLKEH---FEF---PGA-----------------------EIIDIDGVRVDFEDG-W 408 (443)
T ss_pred --CCCCceeccC-CchhHHHHHHHHHHH---hcc---ccC-----------------------CeeeecCEEEEECCe-e
Confidence 2334444553 333455677777541 110 000 133689999999976 9
Q ss_pred EEEecCCCCCCCCeEEEEEEeecCCc
Q 027647 159 LVFRLSGTGSEGATIRLYIEQYEKDP 184 (220)
Q Consensus 159 v~iRpSGTEP~~pkiKiY~Ea~~~~~ 184 (220)
++|||||||| ++|||+|+.+++.
T Consensus 409 vliRpSgtEP---~iriy~Ea~~~~~ 431 (443)
T cd03089 409 GLVRASNTEP---VLVLRFEADTEEG 431 (443)
T ss_pred EEEeecCCCC---EEEEEEEeCCHHH
Confidence 9999999999 9999999976653
No 10
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=99.95 E-value=1.5e-27 Score=225.03 Aligned_cols=145 Identities=27% Similarity=0.340 Sum_probs=114.6
Q ss_pred CeEeccccHHHHHHHHcC-----CcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHH
Q 027647 1 MYQVPTGWKFFGNLMDAG-----LCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKH 74 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~-----~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l 74 (220)
+++|+||||||.++|.+. +++||||||+|++ ++|.+++||++|+++++++++.+++++. +|+++++++
T Consensus 330 v~~t~~G~~~i~~~m~~~~~~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~la~~~~~~~------~Ls~l~~~l 403 (487)
T cd05799 330 VEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEMAAYLKAQGK------TLLDRLDEL 403 (487)
T ss_pred EEECCCCchHHHHHHHHHhccCceEEEEEeccceeeeCCCCCCchHHHHHHHHHHHHHHHHHcCC------CHHHHHHHH
Confidence 479999999999999863 7899999999998 9999999999999999999997543333 999999999
Q ss_pred HHhhCCceeeeeeEEecC---hhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEE
Q 027647 75 WATYGRHYYTRYDYENVD---AGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRY 151 (220)
Q Consensus 75 ~~~yG~~~~~~~~~~~~~---~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~ 151 (220)
|++||++++.+.++++.+ .....++++.|. . ..||+|+
T Consensus 404 ~~~y~~~~~~~~~i~~~~~~~~~~~~~v~~~l~--------------~-------------------------~~DGvki 444 (487)
T cd05799 404 YEKYGYYKEKTISITFEGKEGPEKIKAIMDRLR--------------N-------------------------NPNVLTF 444 (487)
T ss_pred HHHhCceEEeeeeEEEeCCCCHHHHHHHHHHHh--------------c-------------------------cCCEEEE
Confidence 999998887787787632 111133333221 1 0179999
Q ss_pred EEcCCeEEEEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHH
Q 027647 152 LFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALA 196 (220)
Q Consensus 152 ~~~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~ 196 (220)
.|+||+|++|||||||| ++|+|+|+.+.. .++.+++.++
T Consensus 445 ~~~dg~WvliRpS~teP---~~riy~Ea~~~~---~~~~~~~~~~ 483 (487)
T cd05799 445 YLEDGSRVTVRPSGTEP---KIKFYIEVVGKK---TLEEAEKKLD 483 (487)
T ss_pred EEcCCEEEEEEcCCCCc---eEEEEEEeeccc---cHHHHHHHHH
Confidence 99998899999999999 999999998842 2444444444
No 11
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=99.95 E-value=2.2e-27 Score=221.43 Aligned_cols=133 Identities=18% Similarity=0.186 Sum_probs=107.2
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||+++|.+ +++||||||||++ ++|.++|||++++++++++++..++ +|+++++++|+.|+
T Consensus 295 ~~~t~vG~~~i~~~m~~-~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~~~~---------~l~~l~~~l~~~~~ 364 (441)
T cd05805 295 VIRTKTSPQALMEAALE-NVVLAGDGDGGFIFPEFHPGFDAIAALVKILEMLARTNI---------SLSQIVDELPRFYV 364 (441)
T ss_pred EEEEeCChHHHHHHHHh-cccccccCCCcEEccccccCchHHHHHHHHHHHHHhcCC---------CHHHHHHhCchhhe
Confidence 46899999999999998 8999999999998 9999999999999999999997665 99999999987665
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
.+.++.+ +.+.+.++++.|.. ..+ .. ++...||+|+.|+|| |+
T Consensus 365 ----~~~~~~~-~~~~~~~~~~~l~~---~~~-------~~---------------------~~~~~DGvri~~~~g-W~ 407 (441)
T cd05805 365 ----LHKEVPC-PWEAKGRVMRRLIE---EAP-------DK---------------------SIELIDGVKIYEDDG-WV 407 (441)
T ss_pred ----eeeEEEC-ChHHhhHHHHHHHH---hcC-------CC---------------------CceecceeEEecCCC-EE
Confidence 3345554 33334456666643 111 10 123689999999987 99
Q ss_pred EEecCCCCCCCCeEEEEEEeecCC
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKD 183 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~ 183 (220)
+|||||||| +||+|+|+.+++
T Consensus 408 liRpS~TeP---~iri~~Ea~~~~ 428 (441)
T cd05805 408 LVLPDADEP---LCHIYAEGSDQE 428 (441)
T ss_pred EEecCCCCC---EEEEEEecCCHH
Confidence 999999999 999999997644
No 12
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.5e-27 Score=221.40 Aligned_cols=188 Identities=21% Similarity=0.291 Sum_probs=146.0
Q ss_pred eEeccccHHHHHHHHc----C-CcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHH
Q 027647 2 YQVPTGWKFFGNLMDA----G-LCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHW 75 (220)
Q Consensus 2 ~~t~tGfK~I~~~m~~----~-~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~ 75 (220)
.+|+||||||+++..+ + ..+||+|||+||+ +.+++||||++|++.++++++++...++ +||.+.|.++|
T Consensus 390 ~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~a~~~~~lr~~~~-----~sl~e~l~~l~ 464 (607)
T KOG1220|consen 390 EETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKFASMACRLRLAGN-----LSLSEVLEDLY 464 (607)
T ss_pred eeccccchhhhHHHHHHHhcCceeeeeehhhcCcccccCccCcchHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHH
Confidence 5899999999988653 4 4899999999999 9899999999999999999998854333 39999999999
Q ss_pred HhhCCceeeeeeEEecChhhHHHHHHHHHHhhcC--CCcccccccCcccccceeeeecccc-cc--CCCCCC-----ccc
Q 027647 76 ATYGRHYYTRYDYENVDAGAAKELMANLVKMQSS--LPEVNDIVKGICSDVSKVVNADEFE-YK--DPVDGS-----ISK 145 (220)
Q Consensus 76 ~~yG~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~p~~~~~i~g~~~~~~~V~~~~d~~-~~--d~~~~~-----~~~ 145 (220)
++||+|......+-+.+++....+.+.|+++... .|. .+++ +++|+.++|++ .. ++.|+. -+.
T Consensus 465 e~yg~~~~~~~y~l~~~pe~~~~lf~~lR~~~~~~~yp~---~ig~----e~ev~~~rdlT~g~d~s~~d~ka~lpv~~s 537 (607)
T KOG1220|consen 465 ERYGYHSTANSYRLCIDPEVIKALFDGLRNYDTGYIYPK---KIGE----EFEVVNVRDLTTGYDVSSPDHKAVLPVSTS 537 (607)
T ss_pred HhhCccceeeEEEEecCCchhHHHHHHHhhccccccccc---hhcc----cceeeeeeeceeeeecCCCCCccccccccc
Confidence 9999754433334344666778899999887552 232 4542 37899999997 22 233332 147
Q ss_pred cCeEEEEEcCCeEEEEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHHHHCC
Q 027647 146 HQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELCP 204 (220)
Q Consensus 146 ~dgl~~~~~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (220)
+++|.+.+.+|.|+++|.||||| |||+|+|++..+.+...+++...+..+.+++..
T Consensus 538 s~~vTf~~~~~~~~tlR~SgteP---kik~yie~c~~~~~~~~~~l~~~~~~~~~~v~~ 593 (607)
T KOG1220|consen 538 SQMVTFTFNNGGVVTLRTSGTEP---KIKLYIEACLPPDAKSWERLIKLANLTTSAVVE 593 (607)
T ss_pred cceeEEeccCcEEEEEecCCCCc---chhhhHHhhCCccccCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999 999999999998877766666555555554443
No 13
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=99.95 E-value=5.4e-27 Score=219.36 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=104.1
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||+++|.+.+++||||||+|++ +++.+++||++++++++++++..++ +|+++++++ ++|.
T Consensus 293 ~~~t~vG~~~i~~~m~~~~~~~ggE~sgg~~f~~~~~~~Dgi~a~~~lle~l~~~~~---------~l~~l~~~~-~~~~ 362 (445)
T PRK09542 293 PVRTRVGHSFIKALMAETGAIFGGEHSAHYYFRDFWGADSGMLAALHVLAALGEQDR---------PLSELMADY-QRYA 362 (445)
T ss_pred EEEecCcHHHHHHHHHHhCCcEEEeeeccEEecCcCCCCcHHHHHHHHHHHHHhcCC---------CHHHHHHhh-hhcC
Confidence 4799999999999999989999999999998 9999999999999999999997665 999988874 4443
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
...++.+.. . + ...+++.|.+. +.+. ++ .+...||+|+.|+||+|+
T Consensus 363 --~~~~~~~~~-~-~-~~~~~~~l~~~----------~~~~------~~-------------~~~~~DGvki~~~dg~Wv 408 (445)
T PRK09542 363 --ASGEINSTV-A-D-APARMEAVLKA----------FADR------IV-------------SVDHLDGVTVDLGDGSWF 408 (445)
T ss_pred --cccceeecC-C-C-HHHHHHHHHHH----------hhhc------cC-------------CceecceEEEEecCCcEE
Confidence 223333332 1 2 23355555321 1110 00 123679999999998999
Q ss_pred EEecCCCCCCCCeEEEEEEeecCC
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKD 183 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~ 183 (220)
+|||||||| ++|+|+|+.+++
T Consensus 409 liRpSgTEP---~lriy~Ea~~~e 429 (445)
T PRK09542 409 NLRASNTEP---LLRLNVEARTEE 429 (445)
T ss_pred EEEecCCCc---EEEEEEEeCCHH
Confidence 999999999 999999997655
No 14
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.94 E-value=7.7e-27 Score=218.12 Aligned_cols=134 Identities=22% Similarity=0.240 Sum_probs=109.8
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||||+|++ ++|.+++||++++++++++++..++ +|+++++++++ |
T Consensus 301 v~~t~vG~~~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~la~~~~---------~L~~l~~~~~~-~- 369 (445)
T cd05803 301 VFRSAVGEANVVEKMKEVDAVIGGEGNGGVILPDVHYGRDSLVGIALVLQLLAASGK---------PLSEIVDELPQ-Y- 369 (445)
T ss_pred EEEecccHHHHHHHHHhcCCeEEEeccCCeecCCccccccHHHHHHHHHHHHHhcCC---------CHHHHHHhchh-h-
Confidence 4799999999999999999999999999998 9999999999999999999997766 99999999875 2
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
++.+.++.+ +.+.+.++++.|.+ +.+ .. .++..||+|+.|+|| |+
T Consensus 370 --~~~~~~v~~-~~~~~~~i~~~l~~---~~~-------~~---------------------~v~~~DGik~~~~~~-W~ 414 (445)
T cd05803 370 --YISKTKVTI-AGEALERLLKKLEA---YFK-------DA---------------------EASTLDGLRLDSEDS-WV 414 (445)
T ss_pred --heeeeeeec-cHHhHHHHHHHHHH---hcc-------cC---------------------CcccCceEEEecCCe-EE
Confidence 455566765 43445567766643 211 10 134689999999986 99
Q ss_pred EEecCCCCCCCCeEEEEEEeecCC
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKD 183 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~ 183 (220)
++||||||| ++|+|+|+.+++
T Consensus 415 liRpS~teP---~~riy~Ea~s~e 435 (445)
T cd05803 415 HVRPSNTEP---IVRIIAEAPTQD 435 (445)
T ss_pred EEeccCCcc---EEEEEEecCCHH
Confidence 999999999 999999997654
No 15
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4.7e-28 Score=222.28 Aligned_cols=180 Identities=34% Similarity=0.489 Sum_probs=145.2
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCccCCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhCC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGR 80 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG~ 80 (220)
++||||||||+++.+..+.+-||||||- +.+|+|.|||+|+.+.++.+||.+.++.. -+..+.-.++|..||+
T Consensus 343 lyEvPvG~K~F~~~l~~g~~~~~GEESa--Ga~~lRek~g~Wa~~~~~~Ilall~aei~-----a~t~~~~~~~y~~~~r 415 (524)
T COG0033 343 LYEVPVGFKWFVDGLDAGSFGFGGEESA--GASFLREKGGVWATDKDGNILALLAAEIT-----AVTGKIPQEHYAELGR 415 (524)
T ss_pred eEEcCCcceeeeccccccceeecccccc--cccceecCCCceeeechhHHHHHHhhhch-----hhhccCHHHHHHHHHH
Confidence 6899999999999999999999999993 37899999999999999999988874432 2455556667777776
Q ss_pred ceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEEE
Q 027647 81 HYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLV 160 (220)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv~ 160 (220)
.|+ +.+|+-++.+...+..+.|+++..... +.++++|. .|+.+.|+++|+.+.++||++.|++| |+.
T Consensus 416 ~~~-~~~Yervda~aa~~~~a~L~~ls~~~v-~~t~l~g~----------~~~a~~~~~~Gn~s~~~GLkV~~~ng-~fa 482 (524)
T COG0033 416 NFG-RPDYERVDAEAANAQKARLRKLSPEMV-SATTLAGD----------PITAYLTPAPGNGAAIGGLKVTTENG-WFA 482 (524)
T ss_pred HhC-cccHHHhcCchhHHHHHHHHhhCcccC-CccccCCC----------cchhcccCCCCchhhcCceEEEeeCc-EEE
Confidence 555 666665566666778888887654221 12455553 36778889999999999999999999 999
Q ss_pred EecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHHHHCCC
Q 027647 161 FRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELCPH 205 (220)
Q Consensus 161 iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (220)
.||||||- .+|+|+|++..++ .+.++++.++++++.+++.
T Consensus 483 ~R~SGT~~---t~kiY~Esf~~~~--h~~~~q~~~~~iV~~~~~~ 522 (524)
T COG0033 483 ARPSGTEA---TYKIYAESFEGDE--HLKQIQKEAAEIVSEVLKI 522 (524)
T ss_pred EecCCcch---hhhhhhhhhCChH--HHHHHHHHHHHHHHHHHhh
Confidence 99999998 9999999998874 7888999999999988764
No 16
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=99.94 E-value=1.1e-26 Score=217.98 Aligned_cols=133 Identities=22% Similarity=0.229 Sum_probs=102.6
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||+++|.+.+++||||||+|++ ++|.+++||++|+++++++++..++ +|+++++++|++|+
T Consensus 304 ~~~t~vG~~~i~~~m~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ile~la~~~~---------~L~~l~~~~~~~~~ 374 (456)
T PRK15414 304 PVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKGK---------TLGELVRDRMAAFP 374 (456)
T ss_pred EEEecCcHHHHHHHHHhcCCeEEEcccceEEeCCCCCCccHHHHHHHHHHHHHccCC---------CHHHHHHHHHHhcC
Confidence 3689999999999999999999999999998 9999999999999999999996655 99999999999998
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
. +.+.+..+.++ ..++..+.+.... ... ++...||+|+.|+| +|+
T Consensus 375 ~--~~~~~~~~~~~---~~~~~~~~~~~~~------~~~-----------------------~~~~~DGvki~~~~-~~l 419 (456)
T PRK15414 375 A--SGEINSKLAQP---VEAINRVEQHFSR------EAL-----------------------AVDRTDGISMTFAD-WRF 419 (456)
T ss_pred C--CCccccCCCCH---HHHHHHHHHHhcc------ccC-----------------------cEEecceeEEEeCC-ceE
Confidence 4 32333332222 1123333221000 000 13368999999965 478
Q ss_pred EEecCCCCCCCCeEEEEEEee
Q 027647 160 VFRLSGTGSEGATIRLYIEQY 180 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~ 180 (220)
++||||||| ++|+|+|+.
T Consensus 420 llRpSgTEP---~iri~~Ea~ 437 (456)
T PRK15414 420 NLRSSNTEP---VVRLNVESR 437 (456)
T ss_pred EEecCCCce---EEEEEEecC
Confidence 999999999 999999997
No 17
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.3e-26 Score=216.33 Aligned_cols=154 Identities=27% Similarity=0.387 Sum_probs=114.1
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHH-HHHhh
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRK-HWATY 78 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~-l~~~y 78 (220)
+++|+||||||+++|.+.+++||||||+|++ ++|++++||++++++++++++.+++ +|++++.. +++.|
T Consensus 306 ~~~t~vG~~~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~aal~ilel~~~~~~---------~lsel~~~~~~~~~ 376 (464)
T COG1109 306 VVRTKVGDKYIAEKMRENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAESGK---------SLSELLAELLPKYP 376 (464)
T ss_pred EEEecCchHHHHHHHHhcCCeEEEcccCCEEECCCCcCCcHHHHHHHHHHHHHHhCC---------CHHHHHHhhccccC
Confidence 4799999999999999999999999999998 9999999999999999999998776 89999998 65544
Q ss_pred CCceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeE
Q 027647 79 GRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSR 158 (220)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~w 158 (220)
+ + .+.++++.+......+.+.+.+++.. . .+.+.||+++.++||+|
T Consensus 377 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---------------------~~~~idgv~~~~~~g~~ 422 (464)
T COG1109 377 Q--S-VEINVRVTDEGKAEVLEKLLEELREA----------K---------------------KVDTIDGVKVELEDGGR 422 (464)
T ss_pred C--c-ceEeEEEccchhhhHHHHHHHhCccc----------c---------------------eeeeeeeEEEEeCCCcE
Confidence 3 2 66666664333223333334332110 0 12256999999999843
Q ss_pred EEEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHHHHC
Q 027647 159 LVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELC 203 (220)
Q Consensus 159 v~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~~~~ 203 (220)
.++||||||| +||+|+|+.+++ ..+++.+.+..+++..+
T Consensus 423 ~lvRpSGTEP---~lrvy~Ea~~~~---~~~~~~~~~~~~v~~~~ 461 (464)
T COG1109 423 VLVRPSGTEP---LIRVYVEAKDEE---LAEELAEEIAELVREAL 461 (464)
T ss_pred EEEEeCCCce---EEEEEEEECCHH---HHHHHHHHHHHHHHhhh
Confidence 3999999999 999999998544 33444444555555443
No 18
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=99.94 E-value=1.5e-26 Score=216.60 Aligned_cols=151 Identities=18% Similarity=0.139 Sum_probs=112.6
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++|||||||||+ ++|.+++||++|+++++++++.. . +|++++++++
T Consensus 292 v~~t~vG~~~i~~~m~~~~~~~ggE~sGg~~~~~~~~~~Dgi~a~~~ile~la~~-~---------~Ls~l~~~~~---- 357 (449)
T PRK14321 292 VIRTRVGDVAVAEELAKHGGVFGGEPSGTWIIPQWNLTPDGIFAGALVLEMIDRL-G---------PISELAKEVP---- 357 (449)
T ss_pred EEEEecChHHHHHHHHhhCCEEEecCCCCEEeCCcCCCCCHHHHHHHHHHHHHcC-C---------CHHHHHHhcc----
Confidence 4799999999999999988999999999998 99999999999999999999853 2 6899887654
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
.+++.+.++++ +.+.+.++++.|.+. .+. .+.. .++...||+|+.++|| |+
T Consensus 358 ~~~~~~~~v~~-~~~~k~~~~~~l~~~---~~~---~~~~---------------------~~v~~~DGvkv~~~~~-Wv 408 (449)
T PRK14321 358 RYVTLRAKIPC-PNEKKAKAMEIIAKE---ALK---NFDY---------------------ERLIDIDGIRIENDDW-WI 408 (449)
T ss_pred ccccccccccC-chhhHHHHHHHHHHH---hhh---hccc---------------------CceeecceEEEecCCc-EE
Confidence 44566777775 434455666666331 110 1101 0234789999999876 99
Q ss_pred EEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHH
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVR 200 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~ 200 (220)
+|||||||| ++|+|+|+.+++.. +++.+.+.++++
T Consensus 409 liRpS~TeP---~~riy~Ea~s~e~~---~~l~~~~~~~i~ 443 (449)
T PRK14321 409 LFRPSGTEP---IMRITLEAHTEEKA---EELMEKAEKLVK 443 (449)
T ss_pred EEecCCCCc---eEEEEEecCCHHHH---HHHHHHHHHHHH
Confidence 999999999 99999999776533 333334444444
No 19
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=99.94 E-value=1.8e-26 Score=216.57 Aligned_cols=148 Identities=19% Similarity=0.236 Sum_probs=108.5
Q ss_pred CeEeccccHHHHHHHHc-----CCcEEEeccCCCcc-CC----------CCCCCcHHHHHHHHHHHHHHhcccCCCCCCc
Q 027647 1 MYQVPTGWKFFGNLMDA-----GLCSICGEESFGTG-SD----------HIREKDGIWAVLAWLSILAHKNKENLDGGKL 64 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~-----~~~~fg~EES~G~~-~~----------~~~dKDGi~aall~~e~la~~~k~~~~~~~~ 64 (220)
+++|+||||||+++|.+ ..++||+|||+|++ ++ |.++|||++++++++++++..++
T Consensus 286 ~~~t~vG~~~i~~~m~~~~~~~~~~~~g~E~sg~~~~~~~~~~~~~~~~~~~~~Dgi~a~l~ile~l~~~~~-------- 357 (459)
T cd03088 286 VVRTRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVLAAAKEAGI-------- 357 (459)
T ss_pred EEECCCccHHHHHHHHHHHhcCCceEEEEecccceeccchhhccccccccCCCccHHHHHHHHHHHHHhcCC--------
Confidence 47999999999999986 24899999999998 75 56799999999999999986655
Q ss_pred cCHHHHHHHHHHhhCCceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCcc
Q 027647 65 VTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSIS 144 (220)
Q Consensus 65 ~tL~~~l~~l~~~yG~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~ 144 (220)
+|+++++++|++|+ +..+ +..++.+.+..+|++|.+ +++ ...+. |...+.....++
T Consensus 358 -~Ls~ll~~l~~~~~--~~~~--i~~~~~~~~~~~m~~l~~---~~~----~~~~~------------~~~~~~~~~~v~ 413 (459)
T cd03088 358 -PLSELVASLPARFT--ASDR--LQNFPTEKSQALIARLSA---DPE----ARAAF------------FFALGGEVASID 413 (459)
T ss_pred -CHHHHHHHHhhcce--Ehhc--cccCCHHHHHHHHHHHHh---ChH----hhhhh------------hhccCCcccccC
Confidence 99999999999887 2333 331234445567776643 211 01000 000000011356
Q ss_pred ccCeEEEEEcCCeEEEEecCCCCCCCCeEEEEEEeecCC
Q 027647 145 KHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKD 183 (220)
Q Consensus 145 ~~dgl~~~~~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~ 183 (220)
.+||||+.|+||+|++|||||||| ++|+|+|+.+++
T Consensus 414 ~~DGvk~~~~dg~W~liRpSgTEP---~~riy~Ea~~~~ 449 (459)
T cd03088 414 TTDGLRMTFANGDIVHLRPSGNAP---ELRCYVEADSEE 449 (459)
T ss_pred CCCeEEEEECCCCEEEEECCCCCc---eEEEEEecCCHH
Confidence 799999999888999999999999 999999997655
No 20
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.93 E-value=5.7e-26 Score=211.73 Aligned_cols=135 Identities=24% Similarity=0.326 Sum_probs=108.7
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||||+|++ +++.+++||++|+++++++++.. + +|++++++++ +|
T Consensus 291 ~~~~~~G~k~i~~~m~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~l~~~-~---------~l~~~~~~~~-~~- 358 (439)
T cd03087 291 VIRTPVGDVHVAEEMIENGAVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLAEE-K---------PLSELLDELP-KY- 358 (439)
T ss_pred EEEEecChHHHHHHHHhcCCeEEecCCCCEecCCcCCcCCHHHHHHHHHHHHhcC-C---------CHHHHHHhcc-cc-
Confidence 4799999999999999889999999999998 99999999999999999999976 6 9999999874 23
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
++.+.++.+ +.+.+..++++|.+ +.+. . +. .+...||+|+.++|| |+
T Consensus 359 --~~~~~~v~~-~~~~~~~i~~~l~~---~~~~---~--~~---------------------~i~~~DG~k~~~~~~-Wv 405 (439)
T cd03087 359 --PLLREKVEC-PDEKKEEVMEAVEE---ELSD---A--DE---------------------DVDTIDGVRIEYEDG-WV 405 (439)
T ss_pred --ccccccccC-ChHhHHHHHHHHHH---hhhh---c--cC---------------------CeeecceEEEecCCc-EE
Confidence 455556665 33455667777754 1110 0 10 133689999999985 99
Q ss_pred EEecCCCCCCCCeEEEEEEeecCC
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKD 183 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~ 183 (220)
++||||||| ++|+|+|+.+++
T Consensus 406 liRpS~tep---~~rvy~Ea~~~~ 426 (439)
T cd03087 406 LIRPSGTEP---KIRITAEAKTEE 426 (439)
T ss_pred EEeccCCcc---EEEEEEeeCCHH
Confidence 999999999 999999997654
No 21
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=99.91 E-value=6.7e-24 Score=198.67 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=101.6
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||||+|++ ++|.+++||++|+++++++++..++ +|++++++++. |+
T Consensus 303 v~~t~vG~~~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~~~~---------~ls~l~~~~~~-~~ 372 (446)
T PRK14324 303 LKRCNVGDKYVLECMKENGINFGGEQSGHIIFSDYAKTGDGLVSALQVSALMLESKK---------KASEALNPFEL-YP 372 (446)
T ss_pred EEEeCChHHHHHHHHHhcCCEEEEcCcccEEecCcCCCCcHHHHHHHHHHHHHHcCC---------CHHHHHHhhhh-cC
Confidence 4789999999999999999999999999998 9999999999999999999997766 99999998753 54
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
+.+.++.+........ .+.+... . ...+ +||+|+
T Consensus 373 ---~~~~~~~~~~~~~~~~-~~~~~~~--------------------------~----------~~~~------~dg~~~ 406 (446)
T PRK14324 373 ---QLLVNLKVQEKKPLEK-IKGLKEL--------------------------L----------KELE------KLGIRH 406 (446)
T ss_pred ---ceeEEEeeCCcccccc-CHHHHHH--------------------------H----------HHHh------cCCcEE
Confidence 3444555421110000 0111000 0 0111 677899
Q ss_pred EEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHHHH
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVREL 202 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~~~ 202 (220)
+|||||||| +||+|+|+.+++ .++++.+.+..+++..
T Consensus 407 lvR~SgTEp---~irv~~Ea~~~~---~~~~l~~~~~~~~~~~ 443 (446)
T PRK14324 407 LIRYSGTEN---KLRILLEGKDEK---LLEKKMQELVEFFKKA 443 (446)
T ss_pred EEecCCCCc---eEEEEEEECCHH---HHHHHHHHHHHHHHHH
Confidence 999999999 999999997665 3455555555555543
No 22
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=99.90 E-value=1.8e-23 Score=196.71 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=100.7
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||||+|++ ++|.+++||++|+++++++++..++ +|+++++++|..|+
T Consensus 316 v~~t~vG~~~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~~~~---------~lsel~~~~~~~~p 386 (465)
T PRK14317 316 LERTAVGDQHVHAAMLETGAMLGGEQSGHILCHHHGLSGDGLLTALHLATLVHQSGV---------SLAELVDQSFQTYP 386 (465)
T ss_pred EEEcCCchHHHHHHHHHcCcEeeccccceEEEeccccCCcHHHHHHHHHHHHHHhCC---------CHHHHHHhHHHhCC
Confidence 4789999999999999999999999999998 9999999999999999999998766 99999999988887
Q ss_pred CceeeeeeEEecChhh------HHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEE
Q 027647 80 RHYYTRYDYENVDAGA------AKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLF 153 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~------~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~ 153 (220)
+ .+.++.+...+. +..++..+. ..+ +++.
T Consensus 387 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~----------------------------------------~~~-~~~~- 421 (465)
T PRK14317 387 Q---KLRNVRVEDRDRRLNWQECEPLQQAIA----------------------------------------QAE-AAMG- 421 (465)
T ss_pred c---eEEEeeccccchhhhhhcChhHHHHHH----------------------------------------HHH-Hhhc-
Confidence 2 333444322110 011111110 011 1111
Q ss_pred cCCeEEEEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHH
Q 027647 154 EDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVR 200 (220)
Q Consensus 154 ~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~ 200 (220)
+| +|++|||||||| .||+|+|+.+++.. +++...+.++++
T Consensus 422 ~~-gW~liRpS~TEP---~irv~~Ea~~~~~~---~~l~~~~~~~v~ 461 (465)
T PRK14317 422 DT-GRVLVRASGTEP---LIRVMVEAEDAELV---NHWTNHLVAVVQ 461 (465)
T ss_pred CC-ceEEEecCCCCC---EEEEEEEeCCHHHH---HHHHHHHHHHHH
Confidence 44 499999999999 99999999876643 334444444444
No 23
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=99.89 E-value=2.5e-23 Score=194.31 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=100.2
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||+|||++ ++|.+++||++|+++++++++..++ +|++++++++. |
T Consensus 295 v~~t~vG~~~i~~~m~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~~le~la~~~~---------~ls~l~~~~~~-~- 363 (440)
T PRK14323 295 FHRTAVGDRYVHEKLHAKGLTLGGEQSGHVLFLDHAPTGDGVLTALLTLAAMKALGT---------DLDAWYDALPM-Y- 363 (440)
T ss_pred EEEeCChHHHHHHHHHhcCCeEEEcCcccEEeCCCCCCCcHHHHHHHHHHHHHHhCC---------CHHHHHHhhhh-c-
Confidence 4689999999999999999999999999998 9999999999999999999997766 99999988653 2
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
++.+.++++.. +.++++.. .+ ..+. ...+ + .+++++|+
T Consensus 364 --~~~~~~v~~~~---k~~~~~~~-~~----------~~~i-----------------------~~~~-~--~~~~~gW~ 401 (440)
T PRK14323 364 --PQTLLNVRVSD---KAKVAADP-RV----------QEAV-----------------------REAE-A--RLGGRGRV 401 (440)
T ss_pred --CceeEEEEeCC---ccchhcCH-HH----------HHHH-----------------------HHHH-h--hcCCCeEE
Confidence 44555666522 12232211 10 0010 0111 2 22233599
Q ss_pred EEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHH
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVR 200 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~ 200 (220)
+|||||||| .||+|+|+.+++. .+++...+..+++
T Consensus 402 LvRpS~TEP---~irv~~Ea~s~~~---~~~l~~~~~~~v~ 436 (440)
T PRK14323 402 NLRPSGTEP---LVRVMVEGPDEAE---IEEVARELAGVVE 436 (440)
T ss_pred EEecCCCcc---EeEEEEeeCCHHH---HHHHHHHHHHHHH
Confidence 999999999 9999999987663 3344444444443
No 24
>PLN02371 phosphoglucosamine mutase family protein
Probab=99.89 E-value=1.3e-22 Score=195.90 Aligned_cols=147 Identities=14% Similarity=0.053 Sum_probs=105.4
Q ss_pred CeEeccccHHHHHHHHcC-----CcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhccc--CCCCCCccCHHHHHH
Q 027647 1 MYQVPTGWKFFGNLMDAG-----LCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKE--NLDGGKLVTVEDIVR 72 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~-----~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~--~~~~~~~~tL~~~l~ 72 (220)
+++|+||||||.++|.+. +++||||||||++ +++...+||++++++++++|+..... +. +|+++++
T Consensus 393 v~rt~vG~k~v~~~m~~~~~~~~~~~~ggEeSG~~~~~~~~~~dDg~~a~~~ile~la~~~~~~~~~------~Lsel~~ 466 (583)
T PLN02371 393 HHRFKRGYKNVIDKGVRLNSDGEETHLMIETSGHGALKENHFLDDGAYLAVKIIIELVRMRAAGAGG------GLGDLIE 466 (583)
T ss_pred EEEecCchHHHHHHHHHhhccCCceEEEEcccCeEEECCCCCCCcHHHHHHHHHHHHHHHHhccCCC------CHHHHHH
Confidence 479999999999999863 4899999999988 88999999999999999999976432 22 7999999
Q ss_pred HHHHhhCCceeeeeeEEecChh-hHH---HHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCe
Q 027647 73 KHWATYGRHYYTRYDYENVDAG-AAK---ELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQG 148 (220)
Q Consensus 73 ~l~~~yG~~~~~~~~~~~~~~~-~~~---~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dg 148 (220)
++++.|.. +..+..+.+ +.. -.. .+++.|.+ ..+ ..++.. + .+...||
T Consensus 467 ~lp~~~~~-~~~r~~v~~-~~~~~~~kg~~v~~~l~~---~~~----~~~~~~-----~--------------~~~~~DG 518 (583)
T PLN02371 467 DLEEPLEA-VELRLKILD-EGKDFKAYGEEVLEHLRN---SIE----SDGKLE-----G--------------APVNYEG 518 (583)
T ss_pred hchhccCC-ceeeecCCc-cchhHHHHHHHHHHHHHh---hhh----cccccc-----c--------------Cccccce
Confidence 98766653 222333322 210 111 35555543 211 122211 0 1236899
Q ss_pred EEEE----EcCCeEEEEecCCCCCCCCeEEEEEEeecCCcc
Q 027647 149 IRYL----FEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPS 185 (220)
Q Consensus 149 l~~~----~~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~ 185 (220)
+|+. ++|| |++|||||||| .||+|+|+.+++..
T Consensus 519 vkv~~~~~~~~g-WvLiRpS~TEP---~iri~~Ea~s~e~a 555 (583)
T PLN02371 519 VRVSDEGEGFGG-WFLLRQSLHDP---VIPLNIESSSPGGA 555 (583)
T ss_pred EEEEecccCCCc-eEEEEeCCCCc---eEEEEEeECCHHHH
Confidence 9999 7776 99999999999 99999999877643
No 25
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=99.89 E-value=1.4e-23 Score=196.50 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=93.4
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||||+|++ ++|.+++||++|+++++++++..++ +|++++++++. |
T Consensus 304 v~~t~vG~~~i~~~m~~~~~~~ggE~sg~~~f~~~~~~~Dgi~a~l~lle~la~~~~---------~L~~l~~~~~~-~- 372 (448)
T PRK14315 304 LERTAVGDRYVVEHMREGGFNLGGEQSGHIVLSDYATTGDGLVAALQVLAVVVRSGR---------PASEVCRRFEP-V- 372 (448)
T ss_pred EEEeCChHHHHHHHHHhCCCceeecccccEeecccCCCCcHHHHHHHHHHHHHHhCC---------CHHHHhhhcCc-C-
Confidence 4789999999999999989999999999998 9999999999999999999997766 99999998642 2
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
++...++++.. +.....+.+.. ..||+++.+++++|+
T Consensus 373 --~~~~~~~~~~~--~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~gWv 409 (448)
T PRK14315 373 --PQLLKNVRYSG--GKPLEDASVKS---------------------------------------AIADAEARLNGSGRL 409 (448)
T ss_pred --CeeeeEEecCC--cccCCCHHHHH---------------------------------------HHHHHHHHhcCCcEE
Confidence 33344555421 11000000000 123433444334599
Q ss_pred EEecCCCCCCCCeEEEEEEeecCC
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKD 183 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~ 183 (220)
+|||||||| .+|+|+|+.+++
T Consensus 410 LiRpS~teP---~iri~~Ea~s~~ 430 (448)
T PRK14315 410 LIRPSGTEP---LIRVMAEGDDRA 430 (448)
T ss_pred EEecCCCCc---EEEEEEeeCCHH
Confidence 999999999 999999997665
No 26
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=99.89 E-value=4.1e-23 Score=193.05 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=94.8
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||||+|++ ++|.+++||++++++++++|+..++ +|++++++++. |
T Consensus 298 v~~t~vG~~~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~~~~---------~Ls~l~~~~~~-~- 366 (443)
T PRK10887 298 FVRAKVGDRYVLEKLQEKGWRLGGENSGHILCLDKTTTGDGIVAALQVLAAMVRSGM---------SLADLCSGMKL-F- 366 (443)
T ss_pred EEEcCCchHHHHHHHHhcCcEEEEecccceeccCccccCcHHHHHHHHHHHHHHhCC---------CHHHHHhhccc-c-
Confidence 4689999999999999989999999999998 9999999999999999999997766 99999998753 3
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
++.+.++++..........+.|+.. +.. .+ +++. +| +|+
T Consensus 367 --~~~~~~v~~~~~~~~~~~~~~~~~~----------~~~--------------------------~~-~~~~-~d-gWv 405 (443)
T PRK10887 367 --PQVLINVRFKPGADDPLESEAVKAA----------LAE--------------------------VE-AELG-GR-GRV 405 (443)
T ss_pred --cceEEEEEeccccccccchHHHHHH----------HHH--------------------------HH-HHhC-CC-eEE
Confidence 4455566653211111111222221 000 00 1111 34 599
Q ss_pred EEecCCCCCCCCeEEEEEEeecCCc
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKDP 184 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~~ 184 (220)
+|||||||| .+|+|+|+.+++.
T Consensus 406 LiRpS~tEP---~iri~~Ea~s~e~ 427 (443)
T PRK10887 406 LLRKSGTEP---LIRVMVEGEDEAQ 427 (443)
T ss_pred EEecCCCCe---EEEEEEeeCCHHH
Confidence 999999999 9999999987663
No 27
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=99.89 E-value=4e-23 Score=193.06 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=93.2
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||||+|++ ++|.+++||++|+++++++|+..++ +|++++++++.
T Consensus 300 v~~t~vG~~~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~~~~---------~l~~l~~~~~~--- 367 (443)
T TIGR01455 300 LIRTAVGDRYVLEEMRESGYNLGGEQSGHIILLDYSTTGDGIVSALQVLTIMKKSGS---------TLSELAAEFVP--- 367 (443)
T ss_pred EEEeCChHHHHHHHHHhcCCEEEEcCcceEEecCCCcCCcHHHHHHHHHHHHHHhCC---------CHHHHHhhccc---
Confidence 4789999999999999989999999999998 9999999999999999999997765 99999988642
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
+++.+.+.++.....+...++.|+.. + . ..+ .++. +| +|+
T Consensus 368 -~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----------~----------------~~~-~~~~-~~-gW~ 407 (443)
T TIGR01455 368 -YPQTLVNVRVADRKLAAAEAPAVKAA----------I----------E----------------DAE-AELG-GT-GRI 407 (443)
T ss_pred -cCeeeeeEEecccccccccCHHHHHH----------H----------H----------------HHH-HHhC-CC-cEE
Confidence 23445555542211111111222110 0 0 001 1121 34 599
Q ss_pred EEecCCCCCCCCeEEEEEEeecCCc
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKDP 184 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~~ 184 (220)
+|||||||| .||+|+|+.+++.
T Consensus 408 LiRpS~teP---~irv~~Ea~~~e~ 429 (443)
T TIGR01455 408 LLRPSGTEP---LIRVMVEAADEEL 429 (443)
T ss_pred EEecCCCCc---eEEEEEEECCHHH
Confidence 999999999 9999999987653
No 28
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=99.88 E-value=8e-23 Score=191.46 Aligned_cols=141 Identities=20% Similarity=0.282 Sum_probs=98.1
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||||+|++ ++|.+++||++++++++++++..++ +|+++++++. .|.
T Consensus 305 v~~t~vG~~~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~le~la~~~~---------~Ls~l~~~~~-~~p 374 (450)
T PRK14314 305 VLRTPVGDRYVVEEMRRGGANLGGEQSGHLIFLDHNTTGDGILSALQVLRIMIESGK---------PLSELAGLLE-PFP 374 (450)
T ss_pred EEEeCChHHHHHHHHHhcCCEEEEeCcccEEEeCCCCCCcHHHHHHHHHHHHHHhCC---------CHHHHHhhhh-hcC
Confidence 4799999999999999999999999999998 9999999999999999999998766 9999998753 444
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
+ ...+.++......+. ++.+.. ..+++++.+++++|+
T Consensus 375 ~---~~~~~~~~~k~~~~~-~~~~~~---------------------------------------~i~~v~~~~~~~gWv 411 (450)
T PRK14314 375 Q---ALINVRVKEKIPLET-LPEVAK---------------------------------------AIKDVEEALGDSGRV 411 (450)
T ss_pred c---cceEeEeCCcCcccc-HHHHHH---------------------------------------HHHHHHhhhCCCcEE
Confidence 2 222333312111111 111111 012222333233599
Q ss_pred EEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHH
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVR 200 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~ 200 (220)
+|||||||| .+|+|+|+.+++.+ +.+.+.+..+++
T Consensus 412 LiRpS~tEP---~iri~~Ea~~~~~a---~~l~~~~~~~v~ 446 (450)
T PRK14314 412 LLRYSGTEN---LCRVMVEGEDKHQV---DSLAKEIADVVE 446 (450)
T ss_pred EEecCCCCc---EEEEEEeeCCHHHH---HHHHHHHHHHHH
Confidence 999999999 99999999876633 333434444444
No 29
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=99.88 E-value=9.4e-23 Score=190.65 Aligned_cols=127 Identities=18% Similarity=0.181 Sum_probs=93.9
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||+|||++ ++|.+++||++|+++++++++..++ +|++++.. +.
T Consensus 298 ~~~t~vG~~~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~~~lle~la~~~~---------~ls~l~~~----~~ 364 (443)
T PRK14320 298 FIRSKVGDRYVLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADK---------PVSEFKLQ----GE 364 (443)
T ss_pred EEEecCchHHHHHHHHhCCCcEeecCCccEEccCCCCcCCHHHHHHHHHHHHHHcCC---------CHHHHhcc----cc
Confidence 4689999999999999999999999999998 9999999999999999999997665 99999854 22
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEE-cCCeE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLF-EDGSR 158 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~-~dg~w 158 (220)
++++.+.+.+....... +.++.+... .+++++.+ +|| |
T Consensus 365 ~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------------------------------~~~~~~~~~~~g-W 403 (443)
T PRK14320 365 LMQQTLINVPLTKKVAR-EDLQKVASD---------------------------------------VNDVEKRLGNRG-R 403 (443)
T ss_pred cCceEEEEEEecCCCCc-chhHHHHHH---------------------------------------HHHHHhhhCCCc-e
Confidence 23455666554222111 122222110 11222223 454 9
Q ss_pred EEEecCCCCCCCCeEEEEEEeecCCc
Q 027647 159 LVFRLSGTGSEGATIRLYIEQYEKDP 184 (220)
Q Consensus 159 v~iRpSGTEP~~pkiKiY~Ea~~~~~ 184 (220)
++|||||||| .+|+|+|+.+++.
T Consensus 404 ~LiRpS~teP---~~rv~~Ea~s~e~ 426 (443)
T PRK14320 404 VLLRPSGTEP---VLRVMVEADDKSL 426 (443)
T ss_pred EEEecCCCCc---eEEEEEecCCHHH
Confidence 9999999999 9999999987653
No 30
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=99.88 E-value=8.1e-23 Score=191.10 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=99.6
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||+|+|++ ++|.+++||++++++++++++..++ +|+++++++. .|.
T Consensus 301 v~~~~vG~~~i~~~m~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~ile~l~~~~~---------~ls~l~~~~~-~~p 370 (448)
T PRK14316 301 SVKTKVGDRYVVEEMRKGGYNLGGEQSGHIIFLDYNTTGDGLLTALQLAKVMKETGK---------KLSELAAEMK-KYP 370 (448)
T ss_pred EEEeCChHHHHHHHHHhcCCeEEEcCcccEEecccCCCCcHHHHHHHHHHHHHHhCC---------CHHHHHhhhh-hcC
Confidence 4789999999999999989999999999998 9999999999999999999987766 9999998763 333
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEE-cCCeE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLF-EDGSR 158 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~-~dg~w 158 (220)
. ...+.++.. +.+++.. . .+.. ..+++++.+ +|| |
T Consensus 371 ~---~~~~~~v~~---k~~~~~~-~-----------~~~~-------------------------~i~~i~~~~~~~g-w 406 (448)
T PRK14316 371 Q---KLVNVRVTD---KKKAMEN-P-----------EIKE-------------------------IIEKVEEEMAGNG-R 406 (448)
T ss_pred c---ceEEeEeCC---ccccccC-H-----------HHHH-------------------------HHHHHHHHhCCCc-e
Confidence 2 122333311 1112110 0 0000 011222222 455 9
Q ss_pred EEEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHHHHC
Q 027647 159 LVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELC 203 (220)
Q Consensus 159 v~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~~~~ 203 (220)
++|||||||| ++|+|+|+.+++ ..+++.+.+..++...+
T Consensus 407 ~liRpS~TEP---~irvy~Ea~~~e---~~~~l~~~~~~~i~~~~ 445 (448)
T PRK14316 407 VLVRPSGTEP---LVRVMAEAPTQE---EVDKYVDRIADVVEAEM 445 (448)
T ss_pred EEEecCCCCc---EEEEEEEeCCHH---HHHHHHHHHHHHHHHHh
Confidence 9999999999 999999998765 33444555555555544
No 31
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.88 E-value=7.1e-23 Score=190.81 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=94.8
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||||+|++ ++|.+++||++++++++++|+..++ +|+++++++ +.|.
T Consensus 297 v~~~~~G~~~i~~~~~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~lle~la~~~~---------~ls~l~~~l-~~~~ 366 (434)
T cd05802 297 LVRTKVGDRYVLEEMLKHGANLGGEQSGHIIFLDHSTTGDGLLTALQLLAIMKRSGK---------SLSELASDM-KLYP 366 (434)
T ss_pred EEEEcChHHHHHHHHHhcCCEEEEecCCCEEecCcCCCCcHHHHHHHHHHHHHHhCC---------CHHHHHhhc-cccC
Confidence 4789999999999999999999999999998 9999999999999999999987766 999999987 4453
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
+.+.++++... ......+.+.. ..+++++.+++++|+
T Consensus 367 ---~~~~~v~~~~~-~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~gW~ 403 (434)
T cd05802 367 ---QVLVNVRVKDK-KALLENPRVQA---------------------------------------AIAEAEKELGGEGRV 403 (434)
T ss_pred ---eeeEEEEeCCc-cccccCHHHHH---------------------------------------HHHHHHHhhCCCeEE
Confidence 44445554221 11000011111 112233334233599
Q ss_pred EEecCCCCCCCCeEEEEEEeecCCc
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKDP 184 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~~ 184 (220)
+|||||||| .+|+|+|+.+++.
T Consensus 404 liRpS~tep---~irv~~Ea~s~~~ 425 (434)
T cd05802 404 LVRPSGTEP---LIRVMVEGEDEEL 425 (434)
T ss_pred EEecCCCCc---EEEEEEeeCCHHH
Confidence 999999999 9999999987653
No 32
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=99.88 E-value=5.3e-22 Score=184.89 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=93.3
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||+|+|++ +++.+++||++++++++++|+..++ +|++++++++ .|
T Consensus 291 v~~t~vG~~~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~~~~---------~Ls~l~~~lp-~~- 359 (429)
T PRK14322 291 LLRTKVGDKYVLEKMLESGANLGGERSGHIIILDRSTTGDGLITALELMRVLKRSGR---------NLSDFAKEIP-DY- 359 (429)
T ss_pred EEEeCCccHHHHHHHhhcCcceeccCCceEEecCCCCCCcHHHHHHHHHHHHHHhCC---------CHHHHHhhch-hc-
Confidence 4789999999999999989999999999998 9999999999999999999997766 9999999875 23
Q ss_pred CceeeeeeEEecCh-hhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeE
Q 027647 80 RHYYTRYDYENVDA-GAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSR 158 (220)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~w 158 (220)
++.+.++++... +.+. +.|+++. . ..+ +||+|
T Consensus 360 --~~~~~~v~~~~~~~~~~---~~~~~~~-----------~-------------------------~~~------~~g~w 392 (429)
T PRK14322 360 --PQITKNVRRTERMSLEN---ENLRKIV-----------E-------------------------EST------SRGYR 392 (429)
T ss_pred --CeeeeEeeeccccccch---HHHHHHH-----------H-------------------------Hhc------CCCcE
Confidence 333445554221 1111 2222210 0 000 34679
Q ss_pred EEEecCCCCCCCCeEEEEEEeecCCc
Q 027647 159 LVFRLSGTGSEGATIRLYIEQYEKDP 184 (220)
Q Consensus 159 v~iRpSGTEP~~pkiKiY~Ea~~~~~ 184 (220)
++|||||||| .+|+|+|+.+++.
T Consensus 393 ~lvRpS~teP---~irv~~Ea~~~~~ 415 (429)
T PRK14322 393 VVIRPSGTEP---VVRITVEGKDREE 415 (429)
T ss_pred EEEccCCCCc---EEEEEEEECCHHH
Confidence 9999999999 9999999987653
No 33
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.87 E-value=4.6e-22 Score=189.48 Aligned_cols=135 Identities=21% Similarity=0.181 Sum_probs=99.3
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCC--cc-CCC------------------------------CCCCcHHHHHHHH
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFG--TG-SDH------------------------------IREKDGIWAVLAW 47 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G--~~-~~~------------------------------~~dKDGi~aall~ 47 (220)
+++|+||||||.++|.+.++.+|||.||| ++ +++ ...+||+++++++
T Consensus 333 ~~~t~vG~k~v~~~m~e~~~~~ggE~sGHgtvif~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~gDgi~~al~v 412 (513)
T cd03086 333 VVCTPTGVKHLHHAAEEFDIGVYFEANGHGTVLFSESALAKIEENSSLSDEQEKAAKTLLAFSRLINQTVGDAISDMLAV 412 (513)
T ss_pred EEEeCCcHHHHHHHHHHhCcceEEeccCCEEEEECchHHhhhhhhccccchhhhHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 46899999999999999899999999999 88 888 5589999999999
Q ss_pred HHHHHHhcccCCCCCCccCHHHHHHHHHHhhCCceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCccccccee
Q 027647 48 LSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKV 127 (220)
Q Consensus 48 ~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V 127 (220)
+++++..++ +|+++++. |+.|+ ....++++.+ ..+..+.+..... -.|. +
T Consensus 413 l~~l~~~~~---------~lsel~~~-y~~~p---~~~~~v~v~~-~~~~~~~~~e~~~--~~p~------~-------- 462 (513)
T cd03086 413 ELILAALGW---------SPQDWDNL-YTDLP---NRQLKVKVPD-RSVIKTTDAERRL--VEPK------G-------- 462 (513)
T ss_pred HHHHHHhCC---------CHHHHHhh-chhcC---eeeeEEEecC-ccchhhhhHHhhc--cccH------H--------
Confidence 999987766 99998886 34443 3344444422 1111222221100 0010 0
Q ss_pred eeeccccccCCCCCCccccCeEEEEEcCCeEEEEecCCCCCCCCeEEEEEEeecCC
Q 027647 128 VNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKD 183 (220)
Q Consensus 128 ~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~ 183 (220)
-+.+.||+++.++|| |++|||||||| +||+|+|+.+.+
T Consensus 463 --------------l~~~iDG~~~~~~~g-r~lVRpSGTEp---~iRvyaEA~t~~ 500 (513)
T cd03086 463 --------------LQDKIDAIVAKYNNG-RAFVRPSGTED---VVRVYAEAATQE 500 (513)
T ss_pred --------------HHHHHHHHHhcCCCe-eEEEecCCCCc---EEEEEEEeCCHH
Confidence 023678999999986 99999999999 999999997654
No 34
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=99.86 E-value=9e-22 Score=184.29 Aligned_cols=66 Identities=24% Similarity=0.290 Sum_probs=61.1
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHH
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHW 75 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~ 75 (220)
+++|+||||||.++|.+.+++||||+|+|++ ++|.+++||++++++++++|+..++ +|+++++++.
T Consensus 303 v~~t~vG~~~i~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~~~~---------~ls~l~~~~~ 369 (448)
T PRK14318 303 VVTTAVGDRYVLEEMRAGGYSLGGEQSGHIVMPDHATTGDGILTGLRLMARMAQTGK---------SLAELASAMT 369 (448)
T ss_pred EEEeCChHHHHHHHHHhcCcEEEEcCcCcEEecCCCCCCCHHHHHHHHHHHHHHhCC---------CHHHHHhhhh
Confidence 4689999999999999989999999999998 9999999999999999999997766 9999998753
No 35
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=99.86 E-value=1.7e-21 Score=181.50 Aligned_cols=135 Identities=19% Similarity=0.199 Sum_probs=97.8
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
+++|+||||||.++|.+.+++||||+|||++ ++|.+++||+++++.++++|+..++ +|++++++++. |
T Consensus 288 v~~t~~G~~~i~~~m~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~lle~l~~~~~---------~ls~l~~~~p~-~- 356 (430)
T PRK14319 288 VVRTKVGDRYVLEEMLKLNATLGGERSGHIIYLDKSTTGDGLITALETLSVMVKSGK---------KLSDLSNEIPD-Y- 356 (430)
T ss_pred EEEeCCchHHHHHHHHHcCCEEEEcccceEEEhhccCCCcHHHHHHHHHHHHHHhCC---------CHHHHHhhccc-c-
Confidence 4789999999999999999999999999998 9999999999999999999998776 99999998642 3
Q ss_pred CceeeeeeEEecChhhHHHHHHHHHHhhcCCCcccccccCcccccceeeeeccccccCCCCCCccccCeEEEEEcCCeEE
Q 027647 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRL 159 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~p~~~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~~dg~wv 159 (220)
++.+.++.+.+. . +.+ .. .+.. ..+|+ +|| |+
T Consensus 357 --~~~~~~v~~k~~--~--~~~-~~-----------~~~~-------------------------~~~~~----~~g-w~ 388 (430)
T PRK14319 357 --PQVMINVKVKNK--E--VYK-HK-----------EVFK-------------------------LIKSI----KDY-RV 388 (430)
T ss_pred --ceeeEEEEeCCc--c--ccc-cH-----------HHHH-------------------------HHhCC----CCe-EE
Confidence 344444443221 1 110 00 0100 12332 465 99
Q ss_pred EEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHH
Q 027647 160 VFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVR 200 (220)
Q Consensus 160 ~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~ 200 (220)
+|||||||| .+|+|+|+.+++. .+++...+..+++
T Consensus 389 LiRpS~TeP---~irv~~Ea~~~~~---a~~l~~~~~~~v~ 423 (430)
T PRK14319 389 IVRPSGTEP---VVRVLVEGPDEEY---ITNIANDIAGLIK 423 (430)
T ss_pred EEecCCCcc---EEEEEEEeCCHHH---HHHHHHHHHHHHH
Confidence 999999999 9999999987653 3344444444443
No 36
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.85 E-value=5.8e-21 Score=173.53 Aligned_cols=67 Identities=31% Similarity=0.431 Sum_probs=62.3
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHH
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWA 76 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~ 76 (220)
+++|+||||||.++|.+.+++||||||+|++ +++.+++||++++++++++++..++ +|+++++++++
T Consensus 242 v~~t~~G~~~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~le~la~~~~---------~Ls~l~~~~p~ 309 (355)
T cd03084 242 VIRTKTGFKWVGEAMQEGDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILANLGK---------SLSELFSELPR 309 (355)
T ss_pred EEEecCcHHHHHHHHHhcCceEEecCcCCEEECCcCCCCCHHHHHHHHHHHHHHhCC---------CHHHHHHHhhH
Confidence 4799999999999999999999999999998 9999999999999999999998765 99999998763
No 37
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=99.77 E-value=2.4e-18 Score=165.95 Aligned_cols=144 Identities=21% Similarity=0.195 Sum_probs=99.0
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCC--cc-CC------------------------------CCCCCcHHHHHHHH
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFG--TG-SD------------------------------HIREKDGIWAVLAW 47 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G--~~-~~------------------------------~~~dKDGi~aall~ 47 (220)
+++||||.||+.++|.+.++.+|||.||| ++ ++ +....|||++++++
T Consensus 397 v~~t~tGvk~l~~~a~e~di~iyfEaNGHGTvif~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~l~n~~vGDai~~~L~v 476 (585)
T PTZ00302 397 VYCAPTGVKNLHPKAHKYDIGIYFEANGHGTVLFNEKALAEWAKFLAKQNALNSACRQLEKFLRLFNQTIGDAISDLLAV 476 (585)
T ss_pred EEEEeCchHHHHHHHHhcCCeEEEccCCCEEEEECcHHHhhhhhhccccchhhhHHHHHHHhHhhhcCCCccHHHHHHHH
Confidence 47899999999999999999999999999 77 77 67789999999999
Q ss_pred HHHHHHhcccCCCCCCccCHHHHHHHHHHhhCCceeeeeeEEecCh-----hhHHH-HH--HHHHHhhcCCCcccccccC
Q 027647 48 LSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDA-----GAAKE-LM--ANLVKMQSSLPEVNDIVKG 119 (220)
Q Consensus 48 ~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG~~~~~~~~~~~~~~-----~~~~~-i~--~~l~~~~~~~p~~~~~i~g 119 (220)
+++|++.+. +++++++. |..++ +....+.+.+. .+.++ +. +.|++
T Consensus 477 ~~iL~~~~~---------sl~e~~~~-y~dlP---~~~~kv~v~~r~~i~t~d~e~~~v~P~~Lq~-------------- 529 (585)
T PTZ00302 477 ELALAFLGL---------SFQDWLNL-YTDLP---SRQDKVTVKDRTLITNTEDETRLLEPKGLQD-------------- 529 (585)
T ss_pred HHHHHhhCC---------CHHHHHhh-cccCC---ceeeeeEeccCcccccchHhhhcccHHHHHH--------------
Confidence 999988765 99998874 44454 23333333121 11111 11 11211
Q ss_pred cccccceeeeeccccccCCCCCCccccCeEEEEE-cCCeEEEEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHH
Q 027647 120 ICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLF-EDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPL 198 (220)
Q Consensus 120 ~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~~~-~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~ 198 (220)
.+|++...+ ++| |++|||||||| .||||+|+.+.+ ..+++...+..+
T Consensus 530 -------------------------~id~~~~~~~~~g-r~lvRpSGTEp---~vRvyaEA~t~~---~a~~l~~~v~~~ 577 (585)
T PTZ00302 530 -------------------------KIDAIVSKYDNAA-RAFIRPSGTEP---VVRVYAEAPTLE---QADELANEVKGL 577 (585)
T ss_pred -------------------------HHHHHHhhccCCc-eEEEEcCCCCc---EEEEEEEECCHH---HHHHHHHHHHHH
Confidence 122332355 565 99999999999 999999997665 344455555555
Q ss_pred HHHHC
Q 027647 199 VRELC 203 (220)
Q Consensus 199 ~~~~~ 203 (220)
+...+
T Consensus 578 v~~~~ 582 (585)
T PTZ00302 578 VLRYC 582 (585)
T ss_pred HHHHh
Confidence 54433
No 38
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=99.76 E-value=1.1e-18 Score=134.99 Aligned_cols=69 Identities=30% Similarity=0.412 Sum_probs=63.6
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCCcc-CCCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhh
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATY 78 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G~~-~~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~y 78 (220)
+++|+||||||+++|.+.+++||||||+|++ +++.++|||++++++++++++..++ ||+++++++|++|
T Consensus 44 ~~~t~vG~~~i~~~~~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~~l~~l~~~~~---------~ls~ll~~l~~~Y 113 (113)
T PF02880_consen 44 VIRTKVGFKNIAEKMREENAVFGGEESGGFIFPDFSYDKDGIYAALLLLELLAEEGK---------TLSELLDELPKKY 113 (113)
T ss_dssp EEEESSSHHHHHHHHHHTTESEEEETTSEEEETTTESSE-HHHHHHHHHHHHHHHTS----------HHHHHHHHHHHH
T ss_pred EEEecCCcHHHHHHHhhhceeEEecccCeEEecCCCCCCcHHHHHHHHHHHHHHhCC---------CHHHHHHHHhccC
Confidence 4699999999999999999999999999998 9999999999999999999997776 9999999999987
No 39
>PLN02895 phosphoacetylglucosamine mutase
Probab=99.74 E-value=8.4e-18 Score=161.34 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=99.7
Q ss_pred CeEeccccHHHHHHHHcCCcEEEeccCCC--cc-CCCCC------------------------------------CCcHH
Q 027647 1 MYQVPTGWKFFGNLMDAGLCSICGEESFG--TG-SDHIR------------------------------------EKDGI 41 (220)
Q Consensus 1 ~~~t~tGfK~I~~~m~~~~~~fg~EES~G--~~-~~~~~------------------------------------dKDGi 41 (220)
+++|+||.||+.++|.+.++.++||.||| ++ +++.. ..|||
T Consensus 365 v~~t~tGvk~l~~~a~e~digvyfEaNGHGTviFs~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~linq~vGDai 444 (562)
T PLN02895 365 VVCTPTGVKYLHEAAAEFDIGVYFEANGHGTVLFSERFLDWLEAAAAELSSKAKGSEAHKAARRLLAVSRLINQAVGDAL 444 (562)
T ss_pred EEEEeCchHHHHHHHHhcCceEEEccCCCeEEEEChHHHHHHhhhhhccccccccchhhHHHHHHHHHHHhhcCCccHHH
Confidence 46899999999999999999999999999 76 77655 68999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhCCceeeeeeEEecCh-----hhHHH-HH--HHHHHhhcCCCcc
Q 027647 42 WAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDA-----GAAKE-LM--ANLVKMQSSLPEV 113 (220)
Q Consensus 42 ~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG~~~~~~~~~~~~~~-----~~~~~-i~--~~l~~~~~~~p~~ 113 (220)
+++++++.+|++.+. +++++++. |..++ ....++.+.+. ...++ ++ +.|+
T Consensus 445 ~~~L~vl~iL~~~~~---------sl~e~~~~-y~dlP---~~~~kv~V~dr~~~~t~~~e~~~v~P~~Lq--------- 502 (562)
T PLN02895 445 SGLLLVEAILQYRGW---------SLAEWNAL-YQDLP---SRQLKVKVADRTAITTTDAETVVVRPAGLQ--------- 502 (562)
T ss_pred HHHHHHHHHHHHhCC---------CHHHHHhh-CccCC---ceeEeeEEccCccccccchhhhcccHHHHH---------
Confidence 999999999988765 99998874 44454 22333333111 01111 11 1110
Q ss_pred cccccCcccccceeeeeccccccCCCCCCccccCeEEE-EEcCCeEEEEecCCCCCCCCeEEEEEEeecCCcchhhhhHH
Q 027647 114 NDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRY-LFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQ 192 (220)
Q Consensus 114 ~~~i~g~~~~~~~V~~~~d~~~~d~~~~~~~~~dgl~~-~~~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~ 192 (220)
..+| .++ .+++| |++|||||||| .||+|+|+.+.+ ..+++.
T Consensus 503 ------------------------------~~ID-~~v~~~~~G-r~lvRpSGTEp---~vRv~~Ea~t~~---~~~~l~ 544 (562)
T PLN02895 503 ------------------------------DAID-AEVAKYPRG-RAFVRPSGTED---VVRVYAEASTQE---AADSLA 544 (562)
T ss_pred ------------------------------HHHH-HHhcccCCc-eEEEEcCCCCc---EEEEEEEECCHH---HHHHHH
Confidence 1234 333 56776 99999999999 999999997654 345555
Q ss_pred HHHHHHHHHHCC
Q 027647 193 EALAPLVRELCP 204 (220)
Q Consensus 193 ~~~~~~~~~~~~ 204 (220)
..+..++...++
T Consensus 545 ~~v~~~v~~~~~ 556 (562)
T PLN02895 545 REVARLVYDLLG 556 (562)
T ss_pred HHHHHHHHHHhc
Confidence 555666654443
No 40
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=99.45 E-value=6.8e-14 Score=100.38 Aligned_cols=36 Identities=47% Similarity=0.799 Sum_probs=32.4
Q ss_pred ccCeEEEEEcCCeEEEEecCCCCCCCCeEEEEEEeecCC
Q 027647 145 KHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKD 183 (220)
Q Consensus 145 ~~dgl~~~~~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~ 183 (220)
..||+++.++||+|++|||||||| +||+|+|+.+.+
T Consensus 24 ~~~~~~~~~~dG~~l~vR~SgTEP---~iRv~~Ea~~~~ 59 (73)
T PF00408_consen 24 TIDGIKILFEDGWRLLVRPSGTEP---KIRVYVEAPDEE 59 (73)
T ss_dssp HHHCEEEEETTEEEEEEEEESSSS---EEEEEEEESSHH
T ss_pred ccceEEEECCCceEEEEECCCCCc---eEEEEEEeCCHH
Confidence 578999999999888899999999 999999998543
No 41
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.0012 Score=62.99 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=24.6
Q ss_pred eEEEEecCCCCCCCCeEEEEEEeecCCcchhh
Q 027647 157 SRLVFRLSGTGSEGATIRLYIEQYEKDPSKTG 188 (220)
Q Consensus 157 ~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~ 188 (220)
++-.+||||||- .+|+|+|+.+.+.++.+
T Consensus 499 gRaFvR~SGTEd---vVRVYAEa~t~~~~d~l 527 (539)
T KOG2537|consen 499 GRSFVRPSGTED---VVRVYAEASTKEDADQL 527 (539)
T ss_pred CceEEeccCccc---eEEEEEecCchhhHHHH
Confidence 388999999999 99999999988754443
No 42
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=66.04 E-value=8 Score=37.14 Aligned_cols=49 Identities=27% Similarity=0.238 Sum_probs=44.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhCCceeeeeeEEe
Q 027647 33 DHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYEN 90 (220)
Q Consensus 33 ~~~~dKDGi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG~~~~~~~~~~~ 90 (220)
-|.-+|||+.-|++-+++.+..++ ...+..+++=++||+|.|.|++-+.
T Consensus 381 ~Wa~~~~~~Ilall~aei~a~t~~---------~~~~~y~~~~r~~~~~~Yervda~a 429 (524)
T COG0033 381 VWATDKDGNILALLAAEITAVTGK---------IPQEHYAELGRNFGRPDYERVDAEA 429 (524)
T ss_pred ceeeechhHHHHHHhhhchhhhcc---------CHHHHHHHHHHHhCcccHHHhcCch
Confidence 467899999999999999998888 8999999999999999999987664
No 43
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.01 E-value=6.7 Score=37.31 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=25.0
Q ss_pred cCeEEEEEcCCeEEEEecCCCCCCCCeEEEEEEe
Q 027647 146 HQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQ 179 (220)
Q Consensus 146 ~dgl~~~~~dg~wv~iRpSGTEP~~pkiKiY~Ea 179 (220)
-.+..|.-.+|.|+.+||=||-| .+|.|+|-
T Consensus 64 kemY~F~Dkggr~laLRpe~Tap---v~R~~~en 94 (429)
T COG0124 64 KEMYTFKDKGGRSLALRPELTAP---VARAVAEN 94 (429)
T ss_pred cceEEEEeCCCCEEEecccCcHH---HHHHHHhc
Confidence 45666766678999999999999 88888765
No 44
>PF08253 Leader_Erm: Erm Leader peptide ; InterPro: IPR013204 These short proteins are leader peptides (15-19 amino acids) of erm genes that code for resistance determinants in Staphylococcus aureus [].
Probab=48.24 E-value=10 Score=20.22 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=6.8
Q ss_pred ceEEeecC
Q 027647 212 SIFLINRL 219 (220)
Q Consensus 212 ~~~~~~~~ 219 (220)
|||+||+.
T Consensus 5 SiFVI~~v 12 (19)
T PF08253_consen 5 SIFVINTV 12 (19)
T ss_pred EEEEEEee
Confidence 89999974
No 45
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=46.21 E-value=1.1e+02 Score=23.52 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=27.5
Q ss_pred ccccCeEEEEEcCCeEEE---EecCCCCCCCCeEEEEEEeecC
Q 027647 143 ISKHQGIRYLFEDGSRLV---FRLSGTGSEGATIRLYIEQYEK 182 (220)
Q Consensus 143 ~~~~dgl~~~~~dg~wv~---iRpSGTEP~~pkiKiY~Ea~~~ 182 (220)
+..-|.+++..++|.... +++||.- .||+|+.....
T Consensus 26 lA~gDvV~~~~~~g~~~~~~~v~~sGns----TiRv~~~~~~~ 64 (117)
T PF14085_consen 26 LALGDVVRAEPDDGELWFQKVVESSGNS----TIRVIFDDPGP 64 (117)
T ss_pred CCCCCEEEEEeCCCeEEEEEEEecCCCE----EEEEEEcCCcc
Confidence 456789999988875444 5669999 89999976544
No 46
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=35.81 E-value=60 Score=24.74 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=14.9
Q ss_pred ccCeEEEEEcCCeEEEEecCCCC
Q 027647 145 KHQGIRYLFEDGSRLVFRLSGTG 167 (220)
Q Consensus 145 ~~dgl~~~~~dg~wv~iRpSGTE 167 (220)
++.|.+|.+.+|.|+--| +|.|
T Consensus 65 p~G~~hf~~~~~~W~~~r-~g~~ 86 (105)
T cd00503 65 KVGGYHFDYKNGKWICTR-SGEE 86 (105)
T ss_pred CCCCccceecCCEEEECC-CCCh
Confidence 446777777777777666 5544
No 47
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=33.96 E-value=35 Score=26.35 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=18.9
Q ss_pred cccCeEEEEEcCCeEEEEecCCCC
Q 027647 144 SKHQGIRYLFEDGSRLVFRLSGTG 167 (220)
Q Consensus 144 ~~~dgl~~~~~dg~wv~iRpSGTE 167 (220)
++..|-.|.+.+|.|+--| ||++
T Consensus 64 s~~gG~HF~y~~g~W~~~r-sg~~ 86 (106)
T COG1965 64 SKVGGYHFDYKNGEWISTR-SGEE 86 (106)
T ss_pred ccCCCceeEeeCCEEEECC-CCCc
Confidence 4778889999999888766 8877
No 48
>PF15025 DUF4524: Domain of unknown function (DUF4524)
Probab=30.29 E-value=54 Score=26.79 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred cCeEEEEEcCCeEEEEecCCCCC
Q 027647 146 HQGIRYLFEDGSRLVFRLSGTGS 168 (220)
Q Consensus 146 ~dgl~~~~~dg~wv~iRpSGTEP 168 (220)
.|-+...|.||+.+.+.|+|.|=
T Consensus 7 Ddsv~v~f~Dgs~l~LspcGs~f 29 (148)
T PF15025_consen 7 DDSVEVRFSDGSRLQLSPCGSEF 29 (148)
T ss_pred CCeEEEEEcCCCEEEEcCCCccE
Confidence 36788999999999999999994
No 49
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=29.61 E-value=35 Score=23.51 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=10.4
Q ss_pred cCCeEEEEecCCCCC
Q 027647 154 EDGSRLVFRLSGTGS 168 (220)
Q Consensus 154 ~dg~wv~iRpSGTEP 168 (220)
.+| .++||+|.+.|
T Consensus 20 ~~G-~FLvR~s~~~~ 33 (77)
T PF00017_consen 20 PDG-TFLVRPSSSKP 33 (77)
T ss_dssp STT-EEEEEEESSST
T ss_pred CCC-eEEEEeccccc
Confidence 356 78888888865
No 50
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.05 E-value=2e+02 Score=21.13 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=18.1
Q ss_pred EEEEecCCCCCCCCeEEEEEEeecC
Q 027647 158 RLVFRLSGTGSEGATIRLYIEQYEK 182 (220)
Q Consensus 158 wv~iRpSGTEP~~pkiKiY~Ea~~~ 182 (220)
+|-=|||.+.+ ....+|+|....
T Consensus 44 ~IeSRP~~~~~--~~Y~FfVDieg~ 66 (90)
T cd04931 44 HIESRPSRLNK--DEYEFFINLDKK 66 (90)
T ss_pred EEEeccCCCCC--ceEEEEEEEEcC
Confidence 55569999887 579999998754
No 51
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=28.22 E-value=94 Score=23.74 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHCCCCC
Q 027647 190 DSQEALAPLVRELCPHPV 207 (220)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~ 207 (220)
.+-+.|.+.++...++++
T Consensus 85 ~L~~~L~~~~~~~~g~~v 102 (105)
T PRK00446 85 EFWALLEEAATQQAGEPV 102 (105)
T ss_pred HHHHHHHHHHHHHcCCce
Confidence 355666777777766654
No 52
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=22.70 E-value=2.5e+02 Score=18.96 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=17.4
Q ss_pred EEEEecCCCCCCCCeEEEEEEeecC
Q 027647 158 RLVFRLSGTGSEGATIRLYIEQYEK 182 (220)
Q Consensus 158 wv~iRpSGTEP~~pkiKiY~Ea~~~ 182 (220)
++.=||+..++ +...+|++....
T Consensus 29 ~I~Srp~~~~~--~~~~f~id~~~~ 51 (75)
T cd04880 29 KIESRPSRKGL--WEYEFFVDFEGH 51 (75)
T ss_pred EEEeeecCCCC--ceEEEEEEEECC
Confidence 34458988865 589999998764
No 53
>PF06799 DUF1230: Protein of unknown function (DUF1230); InterPro: IPR009631 This family represents Ycf36, which is found in plants, encoded in the genomes of algal chloroplasts and in cyanobacteria. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=22.66 E-value=42 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.3
Q ss_pred ccccHHHHHHHHcCCcEEEeccCCCc
Q 027647 5 PTGWKFFGNLMDAGLCSICGEESFGT 30 (220)
Q Consensus 5 ~tGfK~I~~~m~~~~~~fg~EES~G~ 30 (220)
-.|+.||++++.. ..+-+||||=|
T Consensus 84 yLGW~YV~~RL~s--~tV~YEESGWY 107 (144)
T PF06799_consen 84 YLGWSYVGDRLLS--ATVEYEESGWY 107 (144)
T ss_pred HhChHHHHhhhcc--CcccccccCcc
Confidence 3599999999864 45779999876
No 54
>COG4254 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.58 E-value=66 Score=29.44 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=18.6
Q ss_pred ccCeEEEEEcCCeEEEEecCCCCC
Q 027647 145 KHQGIRYLFEDGSRLVFRLSGTGS 168 (220)
Q Consensus 145 ~~dgl~~~~~dg~wv~iRpSGTEP 168 (220)
..--+.|.|+||++|++ |||++=
T Consensus 95 p~gf~tf~f~DgSRvtv-psgSrV 117 (339)
T COG4254 95 PSGFGTFVFRDGSRVTV-PSGSRV 117 (339)
T ss_pred CCceEEEEecCCceEec-CCCCeE
Confidence 45556899999999876 899985
No 55
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=21.70 E-value=2.5e+02 Score=28.01 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=24.6
Q ss_pred CCcc-CCCCCCCc-HHHHHHHHHHHHHHhcccCCCCCCccCHHHHHHHHHHhhC
Q 027647 28 FGTG-SDHIREKD-GIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYG 79 (220)
Q Consensus 28 ~G~~-~~~~~dKD-Gi~aall~~e~la~~~k~~~~~~~~~tL~~~l~~l~~~yG 79 (220)
-||+ ||-+.|+| | +..-|-+| .+ +|.+.+..++++|+
T Consensus 478 sHFiHPDDvld~dR~--~~~~W~~l----~~---------~l~~~~~~i~~~~P 516 (585)
T PF09960_consen 478 SHFIHPDDVLDEDRN--AGKGWEEL----YK---------SLDKFMSWIKESYP 516 (585)
T ss_pred ecccCCccccccccC--CCCCHHHH----HH---------HHHHHHHHHHHhCC
Confidence 4667 77777776 5 55555443 23 67788888888776
No 56
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=20.90 E-value=2.9e+02 Score=20.75 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=32.1
Q ss_pred eEEEEEcCCeEEEEecCCCCCCCCeEEEEEEeecCCcchhhhhHHHHHHHHHHHHCCCCC
Q 027647 148 GIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELCPHPV 207 (220)
Q Consensus 148 gl~~~~~dg~wv~iRpSGTEP~~pkiKiY~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (220)
-+-+.+.+|.++....| ++| -.-+-+.+-..-..+.-++....+.++++..++.+-
T Consensus 36 ~i~V~v~~~~~m~fgGs-~~P---~a~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~ 91 (114)
T PF01187_consen 36 YIMVTVEDGQRMSFGGS-DDP---AAFVELKSIGGLDPEQNKKYSAAITEFLEEELGIPP 91 (114)
T ss_dssp GEEEEEEESTEEEETTB--SS----EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--G
T ss_pred hEEEEeeCCceEEECCC-CCC---EEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455566656655443 566 666666555543344456777888888888877663
No 57
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=20.19 E-value=3e+02 Score=18.91 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=16.4
Q ss_pred EEEEecCCCCCCCCeEEEEEEeecC
Q 027647 158 RLVFRLSGTGSEGATIRLYIEQYEK 182 (220)
Q Consensus 158 wv~iRpSGTEP~~pkiKiY~Ea~~~ 182 (220)
++..||+..++ ..+.+|++....
T Consensus 31 ~i~s~p~~~~~--~~~~f~vd~~~~ 53 (80)
T cd04905 31 KIESRPSKGGL--WEYVFFIDFEGH 53 (80)
T ss_pred EEEEEEcCCCC--ceEEEEEEEECC
Confidence 44578987654 378999987754
Done!