RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027647
(220 letters)
>gnl|CDD|177942 PLN02307, PLN02307, phosphoglucomutase.
Length = 579
Score = 400 bits (1031), Expect = e-139
Identities = 146/199 (73%), Positives = 165/199 (82%), Gaps = 6/199 (3%)
Query: 2 YQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDG 61
++VPTGWKFFGNLMDAG SICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNK+ L G
Sbjct: 366 FEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKDVLPG 425
Query: 62 GKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGIC 121
GKLVTVEDIVR+HWATYGR++Y+RYDYENVD+ AA ++M +L VN KGI
Sbjct: 426 GKLVTVEDIVREHWATYGRNFYSRYDYENVDSEAANKMMDHLRD------LVNKSKKGIK 479
Query: 122 SDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYE 181
V + AD+FEY DPVDGS+S QGIR+LF DGSR++FRLSGTGS GATIRLYIEQYE
Sbjct: 480 YGVYTLAFADDFEYTDPVDGSVSSKQGIRFLFTDGSRIIFRLSGTGSAGATIRLYIEQYE 539
Query: 182 KDPSKTGRDSQEALAPLVR 200
KDPSK GRD+QEAL PL+
Sbjct: 540 KDPSKHGRDAQEALKPLID 558
>gnl|CDD|100087 cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the
bidirectional interconversion of glucose-1-phosphate
(G-1-P) and glucose-6-phosphate (G-6-P) via a glucose
1,6-diphosphate intermediate, an important metabolic
step in prokaryotes and eukaryotes. In one direction,
G-1-P produced from sucrose catabolism is converted to
G-6-P, the first intermediate in glycolysis. In the
other direction, conversion of G-6-P to G-1-P generates
a substrate for synthesis of UDP-glucose which is
required for synthesis of a variety of cellular
constituents including cell wall polymers and
glycoproteins. The PGM1 family also includes a
non-enzymatic PGM-related protein (PGM-RP) thought to
play a structural role in eukaryotes, as well as
pp63/parafusin, a phosphoglycoprotein that plays an
important role in calcium-regulated exocytosis in
ciliated protozoans. PGM1 belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 548
Score = 362 bits (931), Expect = e-124
Identities = 128/199 (64%), Positives = 152/199 (76%), Gaps = 13/199 (6%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLD 60
+++ PTGWKFFGNLMDAG S+CGEESFGTGSDHIREKDG+WAVLAWLSILAH+N
Sbjct: 341 LFETPTGWKFFGNLMDAGKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAHRN----- 395
Query: 61 GGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGI 120
V+VEDIV++HW YGR++YTRYDYE VD+ AA ++M +L + S LP V
Sbjct: 396 ----VSVEDIVKEHWQKYGRNFYTRYDYEEVDSEAANKMMDHLRALVSDLPGVGKSG--- 448
Query: 121 CSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQY 180
KV AD+F Y DPVDGS+SK QG+R +FEDGSR++FRLSGTGS GATIRLYIE Y
Sbjct: 449 -DKGYKVAKADDFSYTDPVDGSVSKKQGLRIIFEDGSRIIFRLSGTGSSGATIRLYIESY 507
Query: 181 EKDPSKTGRDSQEALAPLV 199
EKDPSK G D+Q AL PL+
Sbjct: 508 EKDPSKYGLDAQVALKPLI 526
>gnl|CDD|223111 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and
metabolism].
Length = 524
Score = 194 bits (496), Expect = 2e-59
Identities = 62/201 (30%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLD 60
+Y+VP G+K+F + +DAG GEES G+ +REK G+WA +ILA E
Sbjct: 343 LYEVPVGFKWFVDGLDAGSFGFGGEES--AGASFLREKGGVWATDKDGNILALLAAEITA 400
Query: 61 GGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGI 120
I ++H+A GR++ R DYE VDA AA A L K+ ++V
Sbjct: 401 -----VTGKIPQEHYAELGRNFG-RPDYERVDAEAANAQKARLRKL------SPEMVSA- 447
Query: 121 CSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQY 180
+ + Y P G+ + G++ E+G R SGT AT ++Y E +
Sbjct: 448 ----TTLAGDPITAYLTPAPGNGAAIGGLKVTTENG-WFAARPSGT---EATYKIYAESF 499
Query: 181 EKDPSKTGRDSQEALAPLVRE 201
E D + Q+ A +V E
Sbjct: 500 EGDEH--LKQIQKEAAEIVSE 518
>gnl|CDD|236050 PRK07564, PRK07564, phosphoglucomutase; Validated.
Length = 543
Score = 189 bits (482), Expect = 3e-57
Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 51/215 (23%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGT------GSDHIREKDGIWAVLAWLSILAHK 54
+Y+VP G+K+F N +D G GEES G GS +KDG+ AVL ILA
Sbjct: 364 LYEVPVGFKWFVNGLDDGSLGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAAEILAVT 423
Query: 55 NKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVN 114
K + +I R+ WA +GR YY+R+D A L K+ PE+
Sbjct: 424 GK---------SPSEIYRELWARFGRPYYSRHDAPATPEQKAA-----LRKL---SPEL- 465
Query: 115 DIVKGICSDVSKVVNADEFEYKDPVDGSISKHQ-------GIRYLFEDGSRLVFRLSGTG 167
V A E DP+D S+++ G++ + E+G R SGT
Sbjct: 466 -------------VGATELA-GDPIDASLTEAPGNGAAIGGLKVVTENG-WFAARPSGT- 509
Query: 168 SEGATIRLYIEQYEKDPSKTG--RDSQEALAPLVR 200
T ++Y E +E D +++QE +A L+
Sbjct: 510 --ETTYKIYAESFEGDEHLHQIQKEAQEIVADLIA 542
>gnl|CDD|217265 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain III.
Length = 112
Score = 74.4 bits (184), Expect = 2e-17
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGS--DHIREKDGIWAVLAWLSILAHKNKEN 58
+ + G K+ M G + GEES G D KDGI A L L ILA K
Sbjct: 43 LVRTKVGDKYVKEKMREGGAVLGGEES-GHIIFLDFATTKDGILAALLVLEILAETGK-- 99
Query: 59 LDGGKLVTVEDIVRKHWATY 78
++ +++ + Y
Sbjct: 100 -------SLSELLEELPERY 112
>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
of unknown function belongs to the
alpha-D-phosphohexomutase superfamily and is found in
both archaea and bacteria. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four structural domains (subdomains)
with a centrally located active site formed by four
loops, one from each subdomain. All four subdomains are
included in this alignment model.
Length = 461
Score = 69.5 bits (171), Expect = 6e-14
Identities = 51/195 (26%), Positives = 70/195 (35%), Gaps = 40/195 (20%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENL 59
+Y+ P G+K+ M I GEES G G HI E+DGI A L L +A K
Sbjct: 302 VYETPVGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGK--- 358
Query: 60 DGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKG 119
+ ++V + YG YY R D A L + +
Sbjct: 359 ------PLSELVAELEEEYGPSYYDRIDLRLTPAQKEAILE---------KLKNEPPLSI 403
Query: 120 ICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQ 179
V +V D G++ + EDGS L+ R SGT E +R+Y E
Sbjct: 404 AGGKVDEVNTID----------------GVKLVLEDGSWLLIRPSGT--E-PLLRIYAEA 444
Query: 180 YEKDPSKTGRDSQEA 194
P K
Sbjct: 445 --PSPEKVEALLDAG 457
>gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase
superfamily includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Members of this family
include the phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). These
enzymes play important and diverse roles in carbohydrate
metabolism in organisms from bacteria to humans. Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 355
Score = 68.9 bits (169), Expect = 8e-14
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 4 VPTGWKFFGNLMDAGLCSICGEESFGTGS-DHIREKDGIWAVLAWLSILAHKNKENLDGG 62
TG+K+ G M G + GEES G + +DGI A L L ILA+ K
Sbjct: 245 TKTGFKWVGEAMQEGDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILANLGK------ 298
Query: 63 KLVTVEDIVRKHWATYGRHYYTRYDYE 89
++ ++ R+YY R
Sbjct: 299 ---SLSELFS----ELPRYYYIRLKVR 318
>gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
is thought to be a phosphopentomutase that catalyzes the
conversion of the nucleoside breakdown products,
ribose-1-phosphate and deoxyribose-1-phosphate to the
corresponding 5-phosphopentoses. PGM2L1 is thought to
catalyze the 1,3-bisphosphoglycerate-dependent synthesis
of glucose 1,6-bisphosphate and other
aldose-bisphosphates that serve as cofactors for several
sugar phosphomutases and possibly also as regulators of
glycolytic enzymes. PGM2 and PGM2L1 belong to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 487
Score = 52.5 bits (127), Expect = 3e-08
Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 56/176 (31%)
Query: 1 MYQVPTGWKFFGNLMDAGLCS-----ICGEESFG-TGSDHIREKDGIWAVLAWLSILAHK 54
+ + TG+K+ GN ++ EES G +R+KDGI A + A+
Sbjct: 330 VEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEMAAYL 389
Query: 55 NKENLDGGKLVTVEDIVRKHWATYGRHY----YTRYDYENVDAGAAKELMANLVKMQSSL 110
+ T+ D + + + YG + ++ + K +M L
Sbjct: 390 KAQGK------TLLDRLDELYEKYGYYKEKTISITFEGKE-GPEKIKAIMDRL------- 435
Query: 111 PEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGT 166
+ + + EDGSR+ R SGT
Sbjct: 436 --------------------------------RNNPNVLTFYLEDGSRVTVRPSGT 459
>gnl|CDD|224034 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
metabolism].
Length = 464
Score = 49.3 bits (118), Expect = 4e-07
Identities = 41/176 (23%), Positives = 62/176 (35%), Gaps = 46/176 (26%)
Query: 4 VPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENLDGG 62
G K+ M GEES DH+R DG+ A L L +LA K
Sbjct: 309 TKVGDKYIAEKMRENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAESGK------ 362
Query: 63 KLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICS 122
++ +++ + Y + D G A+ L L + L E +
Sbjct: 363 ---SLSELLAELLPKY--PQSVEINVRVTDEGKAEVLEKLLEE----LREAKKV------ 407
Query: 123 DVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIE 178
D +D G++ EDG R++ R SGT IR+Y+E
Sbjct: 408 --------------DTID-------GVKVELEDGGRVLVRPSGTEPL---IRVYVE 439
>gnl|CDD|215905 pfam00408, PGM_PMM_IV, Phosphoglucomutase/phosphomannomutase,
C-terminal domain.
Length = 71
Score = 45.4 bits (108), Expect = 5e-07
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 145 KHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKD 183
+ ++ LFEDG R+ R SGT +R+Y+E ++
Sbjct: 22 FAEALKILFEDGRRVTVRPSGTEPV---LRVYVEADDEA 57
>gnl|CDD|240294 PTZ00150, PTZ00150, phosphoglucomutase-2-like protein; Provisional.
Length = 584
Score = 35.4 bits (82), Expect = 0.016
Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 51/230 (22%)
Query: 6 TGWKFFGN----LMDAGLCSI--CGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKEN 58
TG+K+ GN L + EE+ G +R+KDG+ A + + +
Sbjct: 377 TGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVAEMALYLYERG 436
Query: 59 LDGGKLVTVEDIVRKHWATYGRH-----YYTRYDYENVDAGAAKELMANLVKMQSSLPE- 112
T+ + + + YG H YY YD + + + N ++ S P
Sbjct: 437 K------TLVEHLESLYKQYGYHFTNNSYYICYDPSRIVS------IFNDIRNNGSYPTK 484
Query: 113 --------VNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLS 164
+ D+ G + D P+ + Q I + FE+G+ + R S
Sbjct: 485 LGGYPVTRIRDLTTGYDT-----ATPD----GKPLLPVSASTQMITFYFENGAIITIRGS 535
Query: 165 GTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELCPHPVTTKPSIF 214
GT + ++ Y E ++ LA LV E+ + +P +
Sbjct: 536 GTEPK---LKWYAELSGTKDE----AVEKELAALVDEVVEQLM--QPEKY 576
>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily.
The alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 522
Score = 34.5 bits (80), Expect = 0.031
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query: 2 YQVPTGWKFFGNLMDAGLCSICGEESFGT------GSDHIREKDGIWAVLAWLS--ILAH 53
Y+VP G+K+F + + G GEES G G+ +KDGI ++ L+ ILA
Sbjct: 350 YEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGI--IMCLLAAEILA- 406
Query: 54 KNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVK 105
D G+L +++ + +G YY R +DA A E A L K
Sbjct: 407 --VTGKDPGQLY--QELTER----FGEPYYAR-----IDAPATPEQKARLKK 445
>gnl|CDD|217953 pfam04190, DUF410, Protein of unknown function (DUF410). This
family of proteins is from Caenorhabditis elegans and
has no known function. The protein has some GO
references indicating that the protein has a positive
regulation of growth rate and is involved in nematode
larval development.
Length = 251
Score = 31.7 bits (72), Expect = 0.25
Identities = 16/61 (26%), Positives = 21/61 (34%)
Query: 144 SKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELC 203
K++ L G+ FR GS +E EK LA L+ EL
Sbjct: 4 KKYEDAIELLYSGALFFFREKQYGSAADLTTYLLEVLEKAEVADSDSKVARLAELINELD 63
Query: 204 P 204
P
Sbjct: 64 P 64
>gnl|CDD|184798 PRK14704, PRK14704, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 618
Score = 28.6 bits (64), Expect = 2.6
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 25 EESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDI-----VRKHWATYG 79
F TG H+R+ I + LA SI+ N+ GG+ + D+ VRK T
Sbjct: 97 ANGFHTGHGHMRQPQDIKSALALSSIIFQANQNMQHGGQSFALFDVDLAPYVRK---TVE 153
Query: 80 RH 81
RH
Sbjct: 154 RH 155
>gnl|CDD|188111 TIGR01132, pgm, phosphoglucomutase, alpha-D-glucose
phosphate-specific. This enzyme interconverts
alpha-D-glucose-1-P and alpha-D-glucose-6-P [Energy
metabolism, Sugars].
Length = 544
Score = 28.3 bits (63), Expect = 3.5
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 28/116 (24%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGT------GSDHIREKDGIWAVLAWLSILAHK 54
+ +VP G+K+F + + G GEES G G+ +KDGI L I A
Sbjct: 366 LVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVT 425
Query: 55 NKENLDGGKLVTVEDIVRKHW----ATYGRHYYTRYDYENVDAGAAKELMANLVKM 106
K ++H+ A +G Y R + A A A L K+
Sbjct: 426 GKNP-------------QQHYNELAAKFGAPSYNR-----IQAPATSAQKARLKKL 463
>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed.
Length = 679
Score = 27.9 bits (63), Expect = 4.3
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 75 WATYGR-----HYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDV 124
W TYG HY NV+A K L+ +L++ + + ++ V + D+
Sbjct: 491 WCTYGVGDHMSHY-------NVNASVPKTLIQHLIRWVIASGQFDEAVSEVLLDI 538
>gnl|CDD|237573 PRK13963, PRK13963, unkown domain/putative metalloprotease fusion
protein; Provisional.
Length = 258
Score = 27.4 bits (61), Expect = 5.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 144 SKHQGIRYLFEDGSRLVFRLSGTGSEGA 171
Q +R F DG L+F LSG+ + A
Sbjct: 34 VDAQALRIDFADGRSLMFDLSGSSGDAA 61
>gnl|CDD|235143 PRK03629, tolB, translocation protein TolB; Provisional.
Length = 429
Score = 27.8 bits (62), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 142 SISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYI 177
S +H G DGS+L F LS TGS + LY+
Sbjct: 240 SFPRHNGAPAFSPDGSKLAFALSKTGS----LNLYV 271
>gnl|CDD|218228 pfam04720, DUF506, Protein of unknown function (DUF506). Family of
uncharacterized plant proteins.
Length = 218
Score = 27.0 bits (60), Expect = 6.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 119 GICS---DVSKVVNADEFEYKDPVDGSISKHQGIRYLFE 154
IC + S V A E+EY D VDG SK Q +R + +
Sbjct: 105 AICKSKWESSGKVPAGEYEYIDVVDGGESKKQEVRLIVD 143
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 27.3 bits (61), Expect = 6.3
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 148 GIRYLFEDGSRLVFRLSGTGSEG--ATIRLYIEQYEK 182
G+RY+F+ + L F LSG+G+ A + +E +K
Sbjct: 40 GLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDK 76
>gnl|CDD|227114 COG4773, FhuE, Outer membrane receptor for ferric coprogen and
ferric-rhodotorulic acid [Inorganic ion transport and
metabolism].
Length = 719
Score = 27.4 bits (61), Expect = 7.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 78 YGRHYYTRYDYENVDAGAAKELMANL 103
+ + YYT N GA + + A L
Sbjct: 690 FDKTYYTNIGNYNNSYGAPRNVSATL 715
>gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain. The S1 domain occurs in a
wide range of RNA associated proteins. It is
structurally similar to cold shock protein which binds
nucleic acids. The S1 domain has an OB-fold structure.
Length = 74
Score = 25.7 bits (57), Expect = 7.4
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 110 LPEVNDIVKGICSDVSK---VVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGT 166
PE D+VKG + V+K V+ V+G I + ED ++
Sbjct: 1 KPEEGDVVKGTVTRVTKGGAFVDLGN-----GVEGFIPISEISDDRVEDPDEVL------ 49
Query: 167 GSEGATIRLYIEQYEKD 183
G + + + + +K+
Sbjct: 50 -KVGDEVEVKVLKVDKE 65
>gnl|CDD|221268 pfam11853, DUF3373, Protein of unknown function (DUF3373). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 472 to 574 amino acids in
length.
Length = 485
Score = 27.1 bits (60), Expect = 7.7
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 75 WATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDI 116
T+G + R D N A +LM + + + +
Sbjct: 65 RLTFGGDFRFRVDSLNYKTAALGQLMGFNPMVPGQKYKNDAL 106
>gnl|CDD|185102 PRK15180, PRK15180, Vi polysaccharide biosynthesis protein TviD;
Provisional.
Length = 831
Score = 27.0 bits (59), Expect = 9.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 71 VRKHWATYGRHYYTRYDYENVDAGA 95
V+ W R Y R DYEN+ AGA
Sbjct: 579 VKMAWRDKLREMYEREDYENILAGA 603
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0665 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,462,446
Number of extensions: 1071583
Number of successful extensions: 984
Number of sequences better than 10.0: 1
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 32
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)