RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027647
(220 letters)
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase,
phosphotransferase; HET: SEP; 2.40A {Oryctolagus
cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Length = 561
Score = 244 bits (624), Expect = 2e-78
Identities = 114/199 (57%), Positives = 142/199 (71%), Gaps = 10/199 (5%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLD 60
+Y+ PTGWKFFGNLMDA S+CGEESFGTGSDHIREKDG+WAVLAWLSILA + +
Sbjct: 351 LYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---- 406
Query: 61 GGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGI 120
+VEDI++ HW +GR+++TRYDYE V+A A ++M +L + V
Sbjct: 407 -----SVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSAN 461
Query: 121 CSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQY 180
V V AD FEY DPVDGS+SK+QG+R +F DGSR++FRLSGTGS GATIRLYI+ Y
Sbjct: 462 -DKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSY 520
Query: 181 EKDPSKTGRDSQEALAPLV 199
EKD +K +D Q LAPL+
Sbjct: 521 EKDNAKINQDPQVMLAPLI 539
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Length = 572
Score = 234 bits (599), Expect = 1e-74
Identities = 107/199 (53%), Positives = 144/199 (72%), Gaps = 16/199 (8%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLD 60
+++ PTGWKFFGNLMDAGL ++CGEESFGTGS+HIREKDGIWAVLAWL+ILAHKNK +
Sbjct: 368 LFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNK---N 424
Query: 61 GGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGI 120
VTVE+IV ++W +GR+YY+RYDYE VD+ A ++M +L ++ K
Sbjct: 425 TDHFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQLKQGNK-- 482
Query: 121 CSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQY 180
AD ++Y DPVD S+SK+QG+R++F DGSR++FRLSGTGS GATIR+Y EQ+
Sbjct: 483 ---------ADIYDYVDPVDQSVSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQF 533
Query: 181 EKDPSKTGRDSQEALAPLV 199
E+ + ++ ALA ++
Sbjct: 534 EQQQIQ--HETATALANII 550
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 196 bits (500), Expect = 5e-60
Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 37/208 (17%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGT------GSDHIREKDGIWAVLAWLSILAHK 54
+ +VP G+K+F + + G GEES G G+ +KDGI L I A
Sbjct: 390 LVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVT 449
Query: 55 NKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVN 114
K ++ + A +G Y R A K ++ L S +
Sbjct: 450 GK---------NPQEHYNELAARFGAPSYNRLQASATSAQ--KAALSKLSPEMVSASTLA 498
Query: 115 DIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIR 174
G+ + G++ + D R SGT +
Sbjct: 499 G--------------DPITARLTAAPGNGASIGGLKVMT-DNGWFAARPSGTED---AYK 540
Query: 175 LYIEQYEKDPSKTG--RDSQEALAPLVR 200
+Y E + + + +++ E ++ +++
Sbjct: 541 IYCESFLGEEHRKQIEKEAVEIVSEVLK 568
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 164 bits (417), Expect = 3e-48
Identities = 42/208 (20%), Positives = 68/208 (32%), Gaps = 36/208 (17%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGT------GSDHIREKDGIWAVLAWLSILAHK 54
+Y+ P G+K F + G GEES G G +KDGI L ++A +
Sbjct: 346 VYETPVGFKHFVAGLLEGWLGFAGEESAGASFLRFDGRPFSTDKDGILMGLLAAELMAKR 405
Query: 55 NKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVN 114
+ + + GR YY R D A+ + + P
Sbjct: 406 GQ---------APDALYEALAEKLGRPYYARKDLPVSPEAKARLARLSA---KEVHPS-- 451
Query: 115 DIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIR 174
+ + D G+ GI+ + + R SGT +
Sbjct: 452 -----------TLAGEPVLQVLDRATGNGEPLGGIKVVA-ANAWFAVRPSGT---EDVAK 496
Query: 175 LYIEQYEKDPSKTGRDSQEALAPLVREL 202
+Y E + + R +EA A L + L
Sbjct: 497 VYAESFL-GEAHLERVLEEATALLHKAL 523
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 55.7 bits (135), Expect = 2e-09
Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTG-SDHIREKDGIWAVLAWLSILAHKNKENL 59
+ P G+K+ G C I GEES G G +H+ E+DGI L L +A K
Sbjct: 308 VTTTPVGFKWIKEEFLKGDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAATGK--- 364
Query: 60 DGGKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKG 119
+ + ++ A G + Y+ +D L + L +
Sbjct: 365 ------DLAEQFKEVEALTGLTHA----YDRLDLPLKAPLDLTPFREPRPLAGL------ 408
Query: 120 ICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIE 178
D + G+++L+E+ ++FR SGT E +R+Y+E
Sbjct: 409 ------TPKGVDTLD-------------GVKWLYEEA-WVLFRASGT--E-PVVRIYVE 444
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 6e-05
Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 27/122 (22%)
Query: 112 EVNDIVKGICSDVSKVVNA---------DEFEYKDPVDGSISKHQGIRYLFEDGSR--LV 160
E+ +KG +V A + F + S + I LF G R
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESF-FV-------SVRKAITVLFFIGVRCYEA 313
Query: 161 FRLSGTGSEGATIRLYIEQYEKDPSK----TGRDSQEALAPLVRELCPH-PVTTKPSIFL 215
+ T + + +E E PS + +QE + V + H P + I L
Sbjct: 314 Y--PNTSLPPSILEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 216 IN 217
+N
Sbjct: 371 VN 372
Score = 35.8 bits (82), Expect = 0.009
Identities = 36/225 (16%), Positives = 66/225 (29%), Gaps = 95/225 (42%)
Query: 33 DHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRK-------HWATYG----RH 81
+H ++ G SIL DIV H+ R
Sbjct: 1651 NHFKDTYGF-------SIL-----------------DIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 82 YYTRYDYENVDAG--AAKELMANLVKMQSSLPEVNDIVKGICSD----------VSKVVN 129
Y+ +E + G +++ + + +S ++ KG+ S + K
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQPALTLMEKAAF 1744
Query: 130 AD-EFEYKDPVD------------------GSISKHQGIRYLFEDGSRLVF-RLSGTGSE 169
D + + P D +S E +VF R
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMS--------IESLVEVVFYR------- 1789
Query: 170 GATIRLYIEQYEK----------DPSKTGRD-SQEALAPLVRELC 203
G T+++ + + E +P + SQEAL +V +
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Score = 28.5 bits (63), Expect = 2.1
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 40/132 (30%)
Query: 79 GRHYYTRYDYENVDAGAAKEL--MANLVKMQSSLPEVNDIVKGICSDVSKVV-------- 128
G Y AA+++ A+ + + DIV + V+ +
Sbjct: 1632 GMDLYKTSK-------AAQDVWNRADNHFKDTYGFSILDIVIN--NPVNLTIHFGGEKGK 1682
Query: 129 ----NADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDP 184
N ++ VDG + + + + E + FR +G L Q+
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR----SEKGL---LSATQF---- 1731
Query: 185 SKTGRDSQEALA 196
T Q AL
Sbjct: 1732 --T----QPALT 1737
Score = 26.9 bits (59), Expect = 5.9
Identities = 7/61 (11%), Positives = 15/61 (24%), Gaps = 4/61 (6%)
Query: 151 YLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVRELCPHPVTTK 210
L + L + I Y+ + G D + + + +
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYD---TFDGSDLRVLSGSISERIVDC-IIRL 486
Query: 211 P 211
P
Sbjct: 487 P 487
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.0
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 11/26 (42%)
Query: 171 ATIRLYIEQYEKDPSKTGRDSQEALA 196
A+++LY DS ALA
Sbjct: 27 ASLKLY------AD-----DSAPALA 41
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase,
exonuclease, phosphorolytic, exoribonuclease, RNA
degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus}
SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I*
3l7z_C
Length = 251
Score = 27.0 bits (59), Expect = 4.2
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 110 LPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSE 169
P++NDIV G+ DV + K P + + G L L
Sbjct: 71 YPKINDIVIGLVEDVEI--YGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYL----DV 124
Query: 170 GATIRLYIEQYEKDPS 185
G + IE +++
Sbjct: 125 GDYVIARIENFDRSID 140
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 26.5 bits (59), Expect = 7.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 147 QGIRYLFEDGSRLVFRLSGTGSEG 170
G+RY+F+ +R +SG+ G
Sbjct: 58 DGLRYIFQTENRATMCVSGSAHAG 81
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 26.5 bits (59), Expect = 8.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 147 QGIRYLFEDGSRLVFRLSGTGSEG 170
+ +R LF+ +R + + GT G
Sbjct: 51 EMLRELFQTKNRWAYPIDGTSRAG 74
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 26.3 bits (57), Expect = 9.4
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 30 TGSDHIREKDGIWAVLAWLSILAHKNKENLDGGKLVTVEDIVRKHWATYGRHYYTRYDYE 89
+ H E G W +L +L L + L + + G R++
Sbjct: 72 SSGFHGEEAAGPWGMLHFLRGLQ---PALFERVNLSLLPLV-----NPTGFKAGHRFNRF 123
Query: 90 NVD 92
+
Sbjct: 124 GEN 126
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 25.8 bits (56), Expect = 9.4
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 173 IRLYIEQYEK-DPSKTGRDSQEALAPLVRELCPHPVTTKPSIFLINRLD 220
++ E +EK DP T L+ L KP+ + +D
Sbjct: 19 FDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQISLINMD 67
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class
II, diabetes, narcolepsy, autoimmune disease,
structural proteomics in europe, spine, structural
genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP:
b.1.1.2 d.19.1.1 PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A
1jk8_A*
Length = 197
Score = 26.0 bits (57), Expect = 9.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 68 EDIVRKHWATYGRHYYTRYDY 88
EDIV H A+ G + Y Y
Sbjct: 1 EDIVADHVASCGVNLYQFYGP 21
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,512,726
Number of extensions: 210734
Number of successful extensions: 514
Number of sequences better than 10.0: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 22
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)