RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027647
(220 letters)
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 141
Score = 190 bits (484), Expect = 7e-63
Identities = 63/120 (52%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPV 139
R+++TRYDYE V+A A ++M +L + V V V AD FEY DPV
Sbjct: 1 RNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSAN-DKVYTVEKADNFEYHDPV 59
Query: 140 DGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLV 199
DGS+SK+QG+R +F DGSR++FRLSGTGS GATIRLYI+ YEKD +K +D Q LAPL+
Sbjct: 60 DGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLI 119
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 129
Score = 169 bits (431), Expect = 5e-55
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 13/120 (10%)
Query: 80 RHYYTRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPV 139
R+YY+RYDYE VD+ A ++M +L ++ + AD ++Y DPV
Sbjct: 1 RNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQL-----------KQGNKADIYDYVDPV 49
Query: 140 DGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLV 199
D S+SK+QG+R++F DGSR++FRLSGTGS GATIR+Y EQ+E+ + ++ ALA ++
Sbjct: 50 DQSVSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQ--HETATALANII 107
>d1kfia3 c.84.1.1 (A:324-443) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 120
Score = 68.5 bits (167), Expect = 9e-16
Identities = 55/79 (69%), Positives = 67/79 (84%), Gaps = 3/79 (3%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLD 60
+++ PTGWKFFGNLMDAGL ++CGEESFGTGS+HIREKDGIWAVLAWL+ILAHKNK +
Sbjct: 45 LFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNK---N 101
Query: 61 GGKLVTVEDIVRKHWATYG 79
VTVE+IV ++W +G
Sbjct: 102 TDHFVTVEEIVTQYWQQFG 120
>d3pmga3 c.84.1.1 (A:304-420) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 117
Score = 55.4 bits (133), Expect = 7e-11
Identities = 51/79 (64%), Positives = 61/79 (77%), Gaps = 9/79 (11%)
Query: 1 MYQVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKENLD 60
+Y+ PTGWKFFGNLMDA S+CGEESFGTGSDHIREKDG+WAVLAWLSILA + +
Sbjct: 48 LYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQ---- 103
Query: 61 GGKLVTVEDIVRKHWATYG 79
+VEDI++ HW +G
Sbjct: 104 -----SVEDILKDHWHKFG 117
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 84
Score = 27.3 bits (60), Expect = 0.52
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 103 LVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQ 147
++ +S LP +I+ V + + + + +
Sbjct: 1 MIYSRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSE 45
>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 26.2 bits (57), Expect = 2.6
Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 14/93 (15%)
Query: 98 ELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQGIRYLFEDGS 157
+ + + PE+++I + + + I++ Q L
Sbjct: 65 PVYKSFLMSLCPRPEIDEIFTSYHAKAKPYMTKEHLTK------FINQKQRDSRLNSLLF 118
Query: 158 RLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRD 190
++ I++YE R
Sbjct: 119 PPARP--------DQVQGLIDKYEPSGINAQRG 143
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 56
Score = 24.1 bits (52), Expect = 3.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 10 FFGNLMDAGLCSIC 23
++GN G CS C
Sbjct: 8 YYGNPAWQGFCSKC 21
>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal
domain (domain IV) {Rat (Rattus norvegicus), mu-type
[TaxId: 10116]}
Length = 188
Score = 25.4 bits (55), Expect = 4.7
Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 62 GKLVTVEDIVRKHWATYGRHYYTRYDYENVDAGAAKELMANLVKMQSSLP-EVNDIVKGI 120
GKL VE + + + ++D + + +A E+ + LP +++ ++
Sbjct: 78 GKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVAR 137
Query: 121 CSDVSKVVNADEF 133
+D +++ D F
Sbjct: 138 FADDELIIDFDNF 150
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 87
Score = 24.2 bits (52), Expect = 6.6
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 111 PEVNDIVKGICSDVSKVVNADEFEYKDPVDGSISKHQ 147
P++NDIV G+ DV + K P +
Sbjct: 5 PKINDIVIGLVEDVEI--YGWVVDIKAPYKAYLPASN 39
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
coli [TaxId: 562]}
Length = 431
Score = 25.0 bits (54), Expect = 9.3
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 84 TRYDYENVDAGAAKELMANLVKMQSSLPEVNDIVKGICSDVSKVVNADE--FEY 135
T D+ + A ++L+ S+ + V I +V DE EY
Sbjct: 2 TIIDWNSCTAEQQRQLLMR--PAISASESITRTVNDILDNVKA--RGDEALREY 51
>d1uvqa2 d.19.1.1 (A:2-84) Class II MHC alpha chain, N-terminal
domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
Length = 83
Score = 23.4 bits (51), Expect = 9.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 69 DIVRKHWATYGRHYYTRYD 87
DIV H A+ G + Y Y
Sbjct: 1 DIVADHVASCGVNLYQFYG 19
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 858,588
Number of extensions: 39576
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 19
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)